RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11249
(105 letters)
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative
protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 129 bits (325), Expect = 8e-41
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV FL+ L+ R+ +L+ F L E L + + +HWFPE P++G GYRC
Sbjct: 2 MLPEIAAAVGFLSSLL-RTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRC 60
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N K D I+ A +G+S + LP ELTLWVDP+EV R
Sbjct: 61 IRINH--KMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 105
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 127 bits (321), Expect = 3e-40
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
MQ +I A+ F+ + ++ F +L LL ++ HW+PE P +G G+RC
Sbjct: 1 MQLEIQVALNFIISYL---YNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRC 57
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
I + + K D ++E A+K G+ +D+R LP +L++W+DP EV +
Sbjct: 58 IHIGE--KVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQ 102
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 30.7 bits (69), Expect = 0.025
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 12 LAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLN 64
+ + ++ S + A+L+ND + F + + IRLN
Sbjct: 330 VQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLN 382
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Azospirillum irakense [TaxId: 34011]}
Length = 408
Score = 28.8 bits (64), Expect = 0.11
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 3 DQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFAN-HWFPEAPNRGQGYRCI 61
D + FLA+++ + A +A + LL +F N W P G + I
Sbjct: 149 DATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAI 208
Query: 62 RLNKNVKKDTI--LENAAKAVGM 82
N + L + A
Sbjct: 209 TYNDDALVHVAELLSDIAAGRDG 231
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
2287]}
Length = 91
Score = 25.4 bits (56), Expect = 0.88
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 59 RCIRLNKNVKK-DTILENAAKAVGMSYEDM 87
+ K +++ D ILE ++ + +S +D
Sbjct: 8 KKNLQWKKIQRLDKILELVSQKLKLSEKDA 37
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 25.7 bits (55), Expect = 1.3
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 44 ANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSYEDMRLPVELTLWVDPHEVC 103
+ A G+ I+ VK ++ A+ + +D + T + +
Sbjct: 221 DKTYLAAALGTGK--VTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLF 278
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 24.8 bits (54), Expect = 1.6
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 3 DQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLND 41
DQ++ A + +K +E++ S D + ++L
Sbjct: 1 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILAT 39
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 339
Score = 24.7 bits (53), Expect = 2.5
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 11 FLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANH----WFPEAPNRGQGYRCIRLNKN 66
F+ +ER+ + +L+ D F N+ +F + R+ +
Sbjct: 38 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 97
Query: 67 VKKDTILENAAKAVGMSYEDMRLPVELTL 95
V + + + + E + + +
Sbjct: 98 VLSLALQMYGCRVIQKALEFIPSDQQNEM 126
>d2idga1 a.184.1.1 (A:1-160) Hypothetical protein AF0160
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 160
Score = 23.8 bits (51), Expect = 5.4
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 3 DQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANH---WFPE 50
D I+ + F++KL+ER + + E K+ + H
Sbjct: 89 DHIAVELAFMSKLVEREISLAQQMKEEELY-KIRAAQHRFIKAHLQPLVKN 138
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 23.4 bits (50), Expect = 6.9
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 12 LAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNK 65
+ + + S + AELL DR A + +G+ ++LN+
Sbjct: 329 VQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQ 382
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 68
Score = 22.3 bits (48), Expect = 7.7
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 50 EAPNRGQGYRCIRLNKNVKKDTIL 73
E P + + + +K++KK +L
Sbjct: 1 EKPTKDFAFASVVADKDIKKGELL 24
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 22.4 bits (48), Expect = 7.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 23 CDADQLEAFKTKLAELLNDR 42
A ++ F KLA+
Sbjct: 43 LPAAKVAEFSAKLADFSRGS 62
>d1n1ca_ a.184.1.1 (A:) TorA specific chaperone TorD {Shewanella
massilia [TaxId: 76854]}
Length = 207
Score = 23.1 bits (49), Expect = 9.6
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 3 DQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANH 46
D ++ + ++A L S S L+ +
Sbjct: 131 DHLAVMLAYMAHLCCHSENSVQLSFLQTCVNSWLAKFINHLTQC 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 381,299
Number of extensions: 14616
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 18
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)