RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11251
(190 letters)
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 116 bits (291), Expect = 3e-34
Identities = 73/103 (70%), Positives = 83/103 (80%)
Query: 3 CPTQAEKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDN 62
+KSG+PE+LVSC+DCGRSGHPTCLQFT NM +VK Y+WQCIECK C +CGTS+N
Sbjct: 10 GSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEN 69
Query: 63 DDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRK 105
DDQLLFCDDCDRGYHMYCL PP+ PPEGSWSC LC + K
Sbjct: 70 DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112
Score = 34.6 bits (79), Expect = 0.005
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 48 CIEC-KCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPI---QTPPEGSWSCQLC 98
C C ++ S ++L+ C DC R H CL + + W C C
Sbjct: 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 105 bits (264), Expect = 4e-30
Identities = 51/98 (52%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 2 LCPTQAEKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCG-TS 60
L + + +PE+L+SC+DCG SGHP+CL+F+ + V VK RWQCIECK CS C
Sbjct: 12 LGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQG 71
Query: 61 DNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
N D +LFCD CDRG+HM C PP+ P+G W CQ+C
Sbjct: 72 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 42.4 bits (99), Expect = 7e-06
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 48 CIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQ---TPPEGSWSCQLC 98
C C ++L+ C DC H CL + W C C
Sbjct: 8 CSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC 61
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 99.3 bits (247), Expect = 1e-27
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 8 EKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLL 67
+ G D C+ CG+ H CL +K+ WQC ECK C C S D ++L
Sbjct: 14 DSPGDLLDQFFCTTCGQHYHGMCLDIAVTP---LKRAGWQCPECKVCQNCKQSGEDSKML 70
Query: 68 FCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLK 100
CD CD+GYH +CL P +++ P W C+ C
Sbjct: 71 VCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
Score = 57.7 bits (139), Expect = 1e-11
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 46 WQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSC 95
C+VC + + FC C + YH CL + W C
Sbjct: 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQC 51
Score = 35.7 bits (82), Expect = 0.002
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 9 KSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTS 60
+SG+ ++ C C + H CL + SV W+C C+ C +S
Sbjct: 62 QSGEDSKMLVCDTCDKGYHTFCL---QPVMKSVPTNGWKCKNCRICISGPSS 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 96.7 bits (240), Expect = 3e-25
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 8 EKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLL 67
E+ G+ +V R P+C ++ C C C +CG + D+ L
Sbjct: 140 ERPGEGSPMVDNPMR-RKSGPSCKHCKDD-------VNRLCRVCACH-LCGGRQDPDKQL 190
Query: 68 FCDDCDRGYHMYCLVPPIQT-PPEGSWSCQLCLKE 101
CD+CD +H+YCL PP+ + P E W C C +
Sbjct: 191 MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 86.5 bits (214), Expect = 8e-23
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 40 SVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCL 99
S Q I+ C VC D DD+LLFCD CD YH++CL+PP+ P G W C C+
Sbjct: 5 SSGHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64
Score = 25.7 bits (56), Expect = 4.2
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 9 KSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSD 61
+ + + L+ C C + H CL + + W+C +C +
Sbjct: 24 RGDEDDKLLFCDGCDDNYHIFCL---LPPLPEIPRGIWRCPKCILAECKQPPE 73
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 83.0 bits (205), Expect = 1e-21
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 19 CSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHM 78
P+C ++ C C C +CG + D+ L CD+CD +H+
Sbjct: 2 PLGSPEFSGPSCKHCKDD-------VNRLCRVCACH-LCGGRQDPDKQLMCDECDMAFHI 53
Query: 79 YCLVPPIQT-PPEGSWSCQLCLKE 101
YCL PP+ + P E W C C +
Sbjct: 54 YCLDPPLSSVPSEDEWYCPECRND 77
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 74.1 bits (182), Expect = 3e-18
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 27 HPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQ 86
P+C ++ C C C +CG + D+ L CD+CD +H+YCL PP+
Sbjct: 2 GPSCKHCKDD-------VNRLCRVCACH-LCGGRQDPDKQLMCDECDMAFHIYCLDPPLS 53
Query: 87 T-PPEGSWSCQLCLKE 101
+ P E W C C +
Sbjct: 54 SVPSEDEWYCPECRND 69
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 73.5 bits (181), Expect = 3e-18
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCL 99
C VC DD+L+ CD+C++ +H++CL P + P+G W C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 72.9 bits (179), Expect = 9e-18
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 45 RWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGS-WSCQLCLKE 101
+C C C VCG + L CD+C+ YH+YCL PP+ PE W C C +
Sbjct: 21 EKKCHSCSC-RVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 70.5 bits (173), Expect = 6e-17
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 47 QCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKI 106
I CSVC QLL CD C R YH+ CL PP++T P+G W C C + +K
Sbjct: 1 HMIHEDFCSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57
Query: 107 E 107
E
Sbjct: 58 E 58
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 64.7 bits (158), Expect = 8e-15
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 45 RWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
++ C VC +++ CD C R YHM CL P ++ PEG WSC C KE
Sbjct: 5 SYETDHQDYCEVCQ---QGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58
Score = 24.3 bits (53), Expect = 8.0
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSV 56
Q +++ C C R+ H CL + + +W C C+ +
Sbjct: 18 QQGGEIILCDTCPRAYHMVCL---DPDMEKAPEGKWSCPHCEKEGI 60
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 63.9 bits (156), Expect = 2e-14
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
CSVC QLL CD C R YH+ CL PP++T P+G W C C +
Sbjct: 12 CSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 64.6 bits (157), Expect = 2e-14
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 40 SVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
+ ++ C VC L+ C+ C+ +H+ C +P +Q P WSC LC
Sbjct: 14 IIDEFGTLDDSATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
Score = 28.7 bits (64), Expect = 0.39
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQ 65
+P DLV C+ C H C V W C C D D Q
Sbjct: 32 QKPGDLVMCNQCEFCFHLDCHLPALQ---DVPGEEWSCSLCHVLPDLKEEDVDLQ 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 62.1 bits (151), Expect = 9e-14
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIE 107
C+VC + +L+ CD C R +H+ CL PP++ P G+W C CL+ ++++
Sbjct: 11 CAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61
Score = 24.3 bits (53), Expect = 9.9
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTS 60
+L+ C C R+ H CL + + W+C C +V
Sbjct: 15 RDGGELICCDGCPRAFHLACL---SPPLREIPSGTWRCSSCLQATVQEVQ 61
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 61.2 bits (149), Expect = 2e-13
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 51 CKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
+ C VC + +LL CD C YH++CL PP+ P G W C C
Sbjct: 9 MEFCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 62.0 bits (150), Expect = 2e-13
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 54 CSVC--GTSDNDDQLLFCDDCDRGYHMYCLVPPIQTP----PEGSWSCQLCLKEFHRKIE 107
C VC T + +QL+ C +C YH C P + P W C C ++ R +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78
Query: 108 QGRTVLKIGG 117
+ + G
Sbjct: 79 KNQKSGPSSG 88
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 59.5 bits (144), Expect = 1e-12
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 54 CSVC--GTSDNDDQLLFCDDCDRGYHMYCLVPPIQT---PPEGSWSCQLCLKEFHRK 105
C++C S+ ++++ CD C +GYH C P I + + W C+ C+ K
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65
Score = 26.8 bits (59), Expect = 1.1
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 10 SGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIEC 51
S P ++V C CG+ H C + V +W C +C
Sbjct: 17 SEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 59.1 bits (143), Expect = 2e-12
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 50 ECKCCSVC--GTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHR 104
E CS+C G S N + +LFCD C+ H C P PEG W C+ CL+ R
Sbjct: 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSRAR 69
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 59.9 bits (144), Expect = 1e-11
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 51 CKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHR 104
C VC L+ C+ C+ +H+ C +P +Q P WSC LC
Sbjct: 2 ATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 52
Score = 29.5 bits (65), Expect = 0.52
Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 3/94 (3%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCD 70
+P DLV C+ C H C V W C C D L D
Sbjct: 9 QKPGDLVMCNQCEFCFHLDCHLPALQ---DVPGEEWSCSLCHVLPDLKEEDGSLSLDGAD 65
Query: 71 DCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHR 104
+ + C + H+
Sbjct: 66 STGVVAKLSPANQRKCERVLLALFCHEPCRPLHQ 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 55.0 bits (132), Expect = 1e-10
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 50 ECKCCSVC--GTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRK 105
E CS+C G S N + +LFCD C+ H C P PEG W C+ CL+ R
Sbjct: 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSRARP 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 54.5 bits (131), Expect = 1e-10
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 53 CCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIEQ 108
C C D+ ++ CDDCD YH C+ P E W C C + + +
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKKH 75
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 46.9 bits (111), Expect = 5e-07
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 52 KCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFH 103
C+VC N +LL C+ C + +H+ C VP + P G W C C
Sbjct: 5 DWCAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 47.5 bits (112), Expect = 6e-07
Identities = 9/70 (12%), Positives = 25/70 (35%)
Query: 121 AETLEKLRKVEGRIACDEDLKLSDTLRYYMRDSDAAKRLLYRRLRCLADYENANRNLERA 180
T E + ++ ++ ++ DTL Y +++ + A + + R +
Sbjct: 259 GRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEG 318
Query: 181 RTKNKDVHAL 190
R + +
Sbjct: 319 RMVQDEADGI 328
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 46.7 bits (110), Expect = 1e-06
Identities = 5/70 (7%), Positives = 23/70 (32%)
Query: 121 AETLEKLRKVEGRIACDEDLKLSDTLRYYMRDSDAAKRLLYRRLRCLADYENANRNLERA 180
+T E++ + + L + Y ++ + + +++ + +
Sbjct: 239 GKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATS 298
Query: 181 RTKNKDVHAL 190
+ +D +
Sbjct: 299 KITLQDKQNM 308
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 45.6 bits (108), Expect = 1e-06
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 53 CCSVCGTSDNDDQLLFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHRKIEQGRT 111
C D + CD C YH C+ + + + C C
Sbjct: 10 YCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPL 69
Query: 112 VLK 114
K
Sbjct: 70 TEK 72
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 42.2 bits (98), Expect = 3e-05
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
C+VC N LL C+ C + +H+ C VP + + P G W C C
Sbjct: 10 CAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 40.9 bits (95), Expect = 4e-05
Identities = 16/105 (15%), Positives = 26/105 (24%), Gaps = 18/105 (17%)
Query: 15 DLVSCSDCGRSGHPTCLQ-----------FTNNMKVSVKQYRWQCIECKCCSVCGTSDND 63
+VSC+ CG+ + N C
Sbjct: 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG 66
Query: 64 DQLLFCDDCDRGYHMYCLVPPIQTP-------PEGSWSCQLCLKE 101
L+ CD C + C++ + W C +C E
Sbjct: 67 GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 40.5 bits (93), Expect = 2e-04
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 12 QPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDD 71
P++ C CG+ H K+ + ND Q + CD
Sbjct: 8 TPKESDRCGGCGKFTHED----DLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGCDS 63
Query: 72 CDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHR 104
C YH C + + + C C+
Sbjct: 64 CQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGH 97
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 38.3 bits (88), Expect = 4e-04
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 30/109 (27%)
Query: 14 EDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKC-----------------CSV 56
+VSC+ CG+ + +++ C C C
Sbjct: 12 HGIVSCTACGQQVNHFQK---DSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRW 68
Query: 57 CGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTP-------PEGSWSCQLC 98
C L+ CD C + C++ + W C +C
Sbjct: 69 CA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 39/159 (24%)
Query: 41 VKQYRWQCIECKCCSVCGTSDNDDQLLFCDD----CDRGYHMYCLVPPIQTPPEGSWSC- 95
V Y T D+DD + D G+H+ +
Sbjct: 450 VDHYNIPK----------TFDSDDLIPPYLDQYFYSHIGHHLK------NIEHPERMTLF 493
Query: 96 -QLCLKEFH---RKIEQGRTVLKIGGFLPAETLEKLRKVEGRIACDEDLKLSDTLRYYMR 151
+ L +F +KI T G + TL++L+ + I CD D K + +
Sbjct: 494 RMVFL-DFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYKPYI-CDNDPKYERLVNAILD 550
Query: 152 DSDAAKRLLYR-RLRCL----------ADYENANRNLER 179
+ L + L A +E A++ ++R
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 31.0 bits (69), Expect = 0.27
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 120 PAETLEKLRKVEGRIACDEDLKLSDTLRYYMRDSDAAKRLLYRRLRCLADYENA 173
P LE L+K+ +I + + + +R L RRL YEN
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENC 246
Score = 27.1 bits (59), Expect = 4.0
Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 28/93 (30%)
Query: 100 KEFHRKIEQGRTVLKIGGFLPAETLEKLRKVEG-------RIACD--------------E 138
H ++ P E L K R +
Sbjct: 285 TTTHISLDHHS-----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 139 DLKLSDTLRYYMRDSDAAKRLLYRRLRCLADYE 171
L D ++ + D ++ L L E
Sbjct: 340 GLATWDNWKHV--NCDKLTTIIESSLNVLEPAE 370
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 33.7 bits (77), Expect = 0.003
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 54 CSVCGTSDNDDQL-LFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKE 101
C CG S D+ + CD C+ +H C+ + P + + C C +
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.007
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 28/56 (50%)
Query: 125 EK--LRKVEGRIACDEDLKLSDTLRYYMRDSDAAKRLLYRRLRCLADYENANRNLE 178
EK L+K++ LKL Y DS A LA +E
Sbjct: 18 EKQALKKLQAS------LKL------YADDSAPA----------LA----IKATME 47
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 32.9 bits (75), Expect = 0.009
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 54 CSVCGTSDNDDQLLFCDDCD---RGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIEQGR 110
+C + ++ CD+ D +H C+ + P+G W C C R+ + +
Sbjct: 8 YCICNQVSYGE-MVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAAMKRRGSRHK 64
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 34.9 bits (79), Expect = 0.011
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 54 CSVCGTSDNDDQLLFCD--DCDRGYHMYCLVPPI------QTPPEGSWSCQLCLKEFHRK 105
CS+C + + LL C DC R Y C+ + + +W C LCL
Sbjct: 96 CSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSG 152
Query: 106 IEQGR 110
+ Q R
Sbjct: 153 LLQRR 157
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 32.2 bits (73), Expect = 0.014
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 50 ECKCCSVCGTSDNDDQL-LFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHRKI 106
VC + + + CD C +H C+ V + P + C C K +
Sbjct: 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 32.4 bits (73), Expect = 0.038
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 51 CKCCSVCGTSDNDDQLLFC--DDCDRGYHMYCLVPPI------QTPPEGSWSCQLCLKEF 102
C++C +L C ++C R + + C+ + E W+C +C +
Sbjct: 79 QSYCTICCGGRE---VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135
Query: 103 HRKIEQGRT 111
+ + R
Sbjct: 136 TYGLLRRRE 144
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 31.0 bits (70), Expect = 0.049
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 53 CCSVCGTSDNDDQLLFCDDCDRGYHMYCL-----VPPIQTPPEGSWSCQLC 98
C +C N+ ++ CD C+ +H C+ + + C C
Sbjct: 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 31.4 bits (70), Expect = 0.060
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 51 CKCCSVCGTSDNDDQLLFCDD-CDRGYHMYCL------VPPIQTPPEGSWSCQLCLKE 101
C + ++D + C+ C + +H C + T W+C LCLK
Sbjct: 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 30.0 bits (68), Expect = 0.064
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 46 WQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
W + C C ++ C++C H+ C PE + CQ C
Sbjct: 2 WDLVTC----FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 49
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 29.5 bits (66), Expect = 0.17
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 50 ECKCCSVCGTSDNDDQL-LFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHRKIE 107
C +C N + + C C +H C+ + + C C F I
Sbjct: 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIM 69
Query: 108 Q 108
+
Sbjct: 70 K 70
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 28.6 bits (64), Expect = 0.23
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 56 VCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
C ++ C++C H+ C PE + CQ C
Sbjct: 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 64
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 28.7 bits (64), Expect = 0.25
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 53 CCSVCGTSDNDDQLLFCDDCDRG-YHMYCLVPPIQTPPEGSWSCQLCLKE 101
C S + + C +H C+ + P+G W C C +
Sbjct: 13 YCLCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 60
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 28.7 bits (64), Expect = 0.33
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 56 VCGTSDNDDQLLF-CDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLK 100
CGT D+D + + CD C +H C+ + C C++
Sbjct: 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 27.9 bits (62), Expect = 0.37
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 52 KCCSVCGTSDNDDQLLFCDD---CDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
+C + ++ CD+ +H C+ + T P+G W C C++E
Sbjct: 9 PTYCLCHQVSYGE-MIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQE 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.54
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 30/107 (28%)
Query: 89 PEGSWSCQLCLKEFHRKIEQGRTVLKIGGFLPAETLEKLRKVEGRIACDE-----DLKLS 143
P S+ L+E KI LP T EG A DE +L +
Sbjct: 23 PTASFFIASQLQEQFNKI------------LPEPT-------EGFAADDEPTTPAEL-VG 62
Query: 144 DTLRYYMRDSDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAL 190
L Y + +K + ++ L E + D+HAL
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQV--L---NLCLTEFENCYLEGNDIHAL 104
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 27.6 bits (61), Expect = 0.59
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 51 CKCCSVCGTSDNDDQLLFCDD---CDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRK 105
C C V + +++ CD+ +H C+ + T P G W C C +E
Sbjct: 19 CLCHQV-----SYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 69
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 29.6 bits (65), Expect = 0.67
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 53 CCSVCGTSDNDDQL-LFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHR 104
C VC + ++ + CD C +H C+ V + C C
Sbjct: 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 29.2 bits (64), Expect = 0.70
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 54 CSVCGT----SDNDDQLLFCDDCDRGYHMYCLVPPI-------QTPPEGSWSCQLCLKEF 102
C +C D + +++ C CDR H C P +++C C +
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64
Query: 103 HRKIEQGRTVLKIGGF 118
+
Sbjct: 65 PAEWRLALEKELQISL 80
Score = 26.5 bits (57), Expect = 4.7
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 5/113 (4%)
Query: 2 LCPTQAEKSGQPEDLVSCSDCGRSGHPTCLQFTN----NMKVSVKQYRWQCIECKCCSVC 57
LC + ++ C C R H C ++ + + + C+ C
Sbjct: 7 LCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC-TERHP 65
Query: 58 GTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIEQGR 110
+ + L L+ RK++QG
Sbjct: 66 AEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGN 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 27.8 bits (61), Expect = 0.76
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 51 CKCCSVCGTSDNDDQLLFCDD---CDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRK 105
C C V + +++ CD+ +H C+ + T P G W C C +E
Sbjct: 39 CLCHQV-----SYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 89
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 29.2 bits (64), Expect = 0.80
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 51 CKCCSVCGTSDNDDQL-LFCDDCDRGYHMYCL 81
+C + + + CD C +H C+
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCV 35
Score = 28.4 bits (62), Expect = 1.6
Identities = 9/97 (9%), Positives = 18/97 (18%), Gaps = 4/97 (4%)
Query: 11 GQPED----LVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQL 66
P D ++ C C H +C+ + Y E
Sbjct: 11 RLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSK 70
Query: 67 LFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFH 103
+ + S + +
Sbjct: 71 GHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPT 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 27.0 bits (59), Expect = 1.1
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 54 CSVCGTS-DNDDQLLFCD-DCDRGYHMYC------LVPPIQTPPEGSWSCQLCL 99
C +C ++D + C+ C + +H C + W C C+
Sbjct: 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 28.8 bits (63), Expect = 1.1
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 3 CPTQAEKSGQPEDLVSCSDCGRSGHPTC--LQFTNNMKVSVKQYRWQCIECKCCSVCGTS 60
+Q C C S P C Q S ++ Q I +
Sbjct: 440 EVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPN 499
Query: 61 DNDDQLLFCDDCDRGYHMYCLVPPIQTP-PEGSWSCQ-LCLKEFHRKIEQGRTVLKI 115
D+ Y L P+++ SW + + + +L I
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCILFI 556
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 27.6 bits (60), Expect = 1.4
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 52 KCCSVCGTSDN--DDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIEQG 109
C +CG + C+DC + C V P W C++CL++ G
Sbjct: 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSG 115
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 28.2 bits (62), Expect = 1.6
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 50 ECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKI 106
K C++C + Q C+ C H+ C+ Q+ C C + +I
Sbjct: 179 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEI 231
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 27.6 bits (60), Expect = 1.7
Identities = 12/80 (15%), Positives = 17/80 (21%), Gaps = 5/80 (6%)
Query: 32 QFTNNMKVSVKQYRWQCIECKCCSVCGTSDN--DDQLLFCDDCDRGYHMYCLVPPIQTPP 89
+ + C+ C + C +C C P
Sbjct: 49 KIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECS---LFVCKSCSHAHPE 105
Query: 90 EGSWSCQLCLKEFHRKIEQG 109
E W C C KI
Sbjct: 106 EQGWLCDPCHLARVVKIGSL 125
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/74 (18%), Positives = 20/74 (27%)
Query: 4 PTQAEKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDND 63
PT E S + SD L + + ++RW DN
Sbjct: 472 PTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNV 531
Query: 64 DQLLFCDDCDRGYH 77
C D G+
Sbjct: 532 YIGDGCLDMCSGHG 545
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 27.0 bits (59), Expect = 1.7
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 50 ECKCCSVCGTSDNDDQLLFCDD---CDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKI 106
E C C ++ CD+ +H C+ ++ P+G W C KE +
Sbjct: 25 EEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKEIANQR 80
Query: 107 EQGR 110
+ +
Sbjct: 81 SKSK 84
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 26.0 bits (57), Expect = 1.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 51 CKCCSVCGTSDNDDQLLFCD-DCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
C + + + CD CD +H C+ + + C C
Sbjct: 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.3
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 20/69 (28%)
Query: 125 EKLRK-VEGRIACDEDLKLSDTLRYYMRDSDAAKRLLYRRLRCLAD------YENANRNL 177
E +RK E + + L+ D+ + + R A + + +
Sbjct: 85 ESIRKWREEQ---RKRLQ--------ELDAASKVME--QEWREKAKKDLEEWNQRQSEQV 131
Query: 178 ERARTKNKD 186
E+ + N+
Sbjct: 132 EKNKINNRI 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 25.6 bits (56), Expect = 2.6
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 51 CKCCSVCGTSDNDDQLLFCDD---CDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
C C V + +++ CD+ +H C+ + T P G W C C +E
Sbjct: 13 CLCHQV-----SYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 59
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Length = 128
Score = 26.2 bits (57), Expect = 4.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 137 DEDLKLSDTLRYYMRDSDAAKRLLYRRLR 165
+E L + + L Y+R D + R+LR
Sbjct: 100 NERLNIGEPLLVYLRRQDLPEITAQRQLR 128
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding
protein, retrovirus, viral protein; NMR {Mason-pfizer
monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Length = 60
Score = 24.9 bits (54), Expect = 5.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 3 CPTQAEKSGQPEDLVSCSDCGRSGH 27
C A + +P+ C C R H
Sbjct: 17 CHEHAHNNAEPKVPGLCPRCKRGKH 41
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 26.3 bits (59), Expect = 6.3
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 3/26 (11%)
Query: 115 IGGFLPAETLEKLRKVEGR---IACD 137
G A+ ++ L + D
Sbjct: 246 PDGLTYAQGMKILAAAAANNTVVGLD 271
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 26.0 bits (57), Expect = 8.4
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 102 FHRKIEQGRTVLKIGGFLPAETLEKLRKVEGRIACDEDLKLSDT-----LRYYMRDSDAA 156
FH+ V++I E L+KL E + L+L+D L +
Sbjct: 222 FHK-------VVRILSIHLVEFLKKLISQEDFTDINNFLRLNDAFVISELFKRKAFREDF 274
Query: 157 KRLLYRRL-RCLADYENANRNLERAR 181
+R+ R+ + L EN + E
Sbjct: 275 ERIFQRKHFKTLLSTENYEKFSETKE 300
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 26.0 bits (58), Expect = 9.3
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 115 IGGFLPAETLEKLRKVEGR--IACD 137
GG L E L LR V + D
Sbjct: 252 PGGLLSREVLALLRCVGDLKPVGFD 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.447
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,952,875
Number of extensions: 172883
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 214
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)