RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11251
(190 letters)
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 58.1 bits (140), Expect = 9e-13
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
C VC DD+L+ CD+C++ +H++CL P + P+G W C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
Score = 28.0 bits (62), Expect = 0.10
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 9 KSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCS 55
K G+ + L+ C +C ++ H CL+ V WQC C+ +
Sbjct: 8 KKGEDDKLILCDECNKAFHLFCLRPALY---EVPDGEWQCPACQPAT 51
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 53.9 bits (129), Expect = 6e-11
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
++C L+ C+ C+ +H+ C +P +Q P WSC LC
Sbjct: 7 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 54
Score = 30.0 bits (67), Expect = 0.030
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQ 65
+P DLV C+ C H C V W C C D D Q
Sbjct: 14 QKPGDLVMCNQCEFCFHLDCH---LPALQDVPGEEWSCSLCHVLPDLKEEDVDLQ 65
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 51.8 bits (123), Expect = 6e-10
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 54 CSVCG--TSDNDDQLLFCDDCDRGYHMYCLVPPIQTPP----EGSWSCQLCLKEFHRKIE 107
C VC T + +QL+ C +C YH C P + W C C ++ R +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78
Query: 108 QGRT 111
+ +
Sbjct: 79 KNQK 82
Score = 25.2 bits (54), Expect = 2.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 10 SGQPEDLVSCSDCGRSGHPTCLQFTNNMKV-SVKQYRWQCIECK 52
LV C +C H C + K + + W C C
Sbjct: 27 VASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 50.0 bits (119), Expect = 2e-09
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 48 CIECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLK 100
++CKC + D+ +++L CD C +H C+ + C C++
Sbjct: 16 KVDCKCGTK---DDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
Score = 23.5 bits (50), Expect = 8.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 14 EDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECK 52
E +++C CG H C+ N + K + C C
Sbjct: 29 ERMLACDGCGVWHHTRCIGINNADALPSK---FLCFRCI 64
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 48.0 bits (114), Expect = 6e-09
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 54 CSVCGTSDNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLC 98
C + +LL CD C YH++CL PP+ P G W C C
Sbjct: 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
Score = 29.1 bits (65), Expect = 0.049
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 11 GQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCG 58
+L+ C C S H CL N + W C C C ++ G
Sbjct: 16 KDGGELLCCDTCPSSYHIHCL---NPPLPEIPNGEWLCPRCTCPALKG 60
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 45.4 bits (107), Expect = 8e-08
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 54 CSVCGTSDNDD-QLLFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEF 102
C CG S D + CD C+ +H C+ + P + + C C +
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59
Score = 24.6 bits (53), Expect = 2.7
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 3 CPTQAEKSGQPEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKC 53
C E E + C C H C++ T +KQ ++C C
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQ--YKCPSCSN 57
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 44.7 bits (105), Expect = 2e-07
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 50 ECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCL-----VPPIQTPPEGSWSCQLC 98
C +C N+ ++ CD C+ +H C+ + + C C
Sbjct: 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
Score = 24.7 bits (53), Expect = 2.8
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 9 KSGQPEDLVSCSDCGRSGHPTCLQFTNNM--KVSVKQYRWQCIECK 52
+ ++ C C H C+ + + + C C
Sbjct: 23 QPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 36.6 bits (84), Expect = 2e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 54 CSVCGTSDNDD-QLLFCDDCDRGYHMYCL-VPPIQTPPEGSWSCQLCLKEFHRKIEQGR 110
+C N + ++ C C +H C+ + + C C F I +
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNW 72
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 32.6 bits (74), Expect = 0.003
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 56 VCGTSDNDDQLL--FCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
+C + + D +H C+ + T P G W C C +E
Sbjct: 6 LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 51
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 29.6 bits (66), Expect = 0.042
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 54 CSVCGTSDNDDQLLFCDD--CDRGYHMYCLVPPIQTPPEGSWSCQLCLKE 101
+C + + ++ +H C+ + P+G W C C +
Sbjct: 18 YCLCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 65
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 31.3 bits (69), Expect = 0.047
Identities = 12/110 (10%), Positives = 22/110 (20%), Gaps = 1/110 (0%)
Query: 19 CSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDCDRGYHM 78
+ + K + ++ E +
Sbjct: 115 LPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSK 174
Query: 79 YCLVPPIQTPPEGSWSCQLCLKEFHRKIEQ-GRTVLKIGGFLPAETLEKL 127
+ + Q LK+FH K I P L K+
Sbjct: 175 FSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKM 224
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 27.9 bits (61), Expect = 0.69
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 3/77 (3%)
Query: 61 DNDDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQL-CLKEFHRKIEQ-GRTVLKI-GG 117
D +L P+ + KEFHR+ + G
Sbjct: 169 SQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGD 228
Query: 118 FLPAETLEKLRKVEGRI 134
P L L +
Sbjct: 229 DDPVHRLRVLSEYLDMF 245
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 26.6 bits (58), Expect = 0.70
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 56 VCGTSDNDDQLLFCD--DCDRGYHMYCLVPPIQT-----PPEGSWSCQLC 98
VCG S D ++ C+ C H+ C++ P + P S+ C++C
Sbjct: 20 VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.0 bits (59), Expect = 0.90
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 52 KCCSVCGTSDN--DDQLLFCDDCDRGYHMYCLVPPIQTPPEGSWSCQLCLKEFHRKIEQG 109
C +CG + C+DC + C V P W C++CL++ G
Sbjct: 49 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSG 108
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 106
Score = 25.7 bits (56), Expect = 1.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 137 DEDLKLSDTLRYYMRDSDAAKRLLYRRLR 165
+E L + + L Y+R D + R+LR
Sbjct: 78 NERLNIGEPLLVYLRRQDLPEITAQRQLR 106
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 26.0 bits (57), Expect = 2.4
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 50 ECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLV 82
+ C +C + ++ C D R C+V
Sbjct: 53 DLHVCPICFNITDAEKCDVCADPSRDQRTICVV 85
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis
[TaxId: 1423]}
Length = 324
Score = 26.2 bits (57), Expect = 2.9
Identities = 7/67 (10%), Positives = 18/67 (26%)
Query: 13 PEDLVSCSDCGRSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDDC 72
E+ +DC + P S + IE + + ++ + +
Sbjct: 159 GEEQYVFADCAINIAPDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKV 218
Query: 73 DRGYHMY 79
+
Sbjct: 219 ADAVKIA 225
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 24.9 bits (54), Expect = 3.4
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 50 ECKCCSVCGTSDNDDQLLFCDDCDRGYHMYCLVPP 84
+ C C + CD+CD H C +
Sbjct: 46 QVYTCDKCEE-EGTIWSYHCDECDFDLHAKCALNE 79
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal,
substrate-binding domain {Garden pea (Pisum sativum)
[TaxId: 3888]}
Length = 176
Score = 25.2 bits (55), Expect = 4.3
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 94 SCQLCLKEFHRKIEQGRTVLKIGGFLPAETLEKLRKVEGRIACDEDLKLSDTLRYYMRDS 153
+C+ L +H IEQ R + + +R+ E + L + +
Sbjct: 93 ACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMV-------LQQIDGIFEQKE 145
Query: 154 DAAKRLLY---RRLRCL 167
+L Y RRL+ L
Sbjct: 146 LELDQLEYYQERRLKDL 162
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.3 bits (52), Expect = 5.3
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 13 PEDLVSCSDCG-RSGHPTCLQFTNNMKVSVKQYRWQCIECKCCSVCGTSDNDDQLLFCDD 71
E + + + C Q+ + + C + C +N+ + + +
Sbjct: 17 VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE 76
Query: 72 CDRGYHMYCL 81
+ Y
Sbjct: 77 IMQRYKKLQF 86
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of
primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Length = 54
Score = 23.3 bits (50), Expect = 6.5
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 54 CSVCGTSD----NDDQLLFCDDCDRGYHMYCLVPPIQTP 88
C CG+SD D FC C++ +
Sbjct: 8 CDNCGSSDGNSLFSDGHTFCYVCEKWTAGNEDTKERASK 46
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 97
Score = 24.2 bits (52), Expect = 6.9
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 46 WQCIECKCCSVCGTSDNDDQLLFCDDC-DRGYHMYCLVPP-----IQTPPE 90
C C G+ + DDQ DD D G+ + C P I+T +
Sbjct: 42 GSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKK 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.447
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,853
Number of extensions: 38510
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 76
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)