Query psy11252
Match_columns 146
No_of_seqs 114 out of 1058
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 3.9E-39 1.3E-43 291.1 4.9 112 2-145 367-478 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 2.1E-38 7.3E-43 289.2 7.0 111 2-145 434-544 (784)
3 1w7j_A Myosin VA; motor protei 100.0 2.2E-38 7.4E-43 289.5 5.2 111 2-145 418-528 (795)
4 4db1_A Myosin-7; S1DC, cardiac 100.0 2.6E-38 8.8E-43 288.5 4.2 110 2-144 442-552 (783)
5 1w9i_A Myosin II heavy chain; 100.0 7.5E-38 2.6E-42 285.0 5.2 110 2-144 436-547 (770)
6 4anj_A Unconventional myosin-V 100.0 1.8E-37 6.1E-42 289.7 7.0 110 2-144 438-547 (1052)
7 1kk8_A Myosin heavy chain, str 100.0 8.1E-38 2.8E-42 286.9 4.2 110 2-144 441-551 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.8E-37 6.2E-42 290.6 4.6 111 2-145 418-528 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 4.1E-37 1.4E-41 286.4 5.1 111 2-144 413-527 (995)
10 1i84_S Smooth muscle myosin he 100.0 1.6E-36 5.6E-41 285.6 6.0 111 2-145 444-559 (1184)
11 1g8x_A Myosin II heavy chain f 100.0 1.5E-36 5E-41 283.0 5.3 111 2-145 436-548 (1010)
12 2zvk_U DNA polymerase ETA, pro 34.7 17 0.00058 18.9 1.2 14 131-144 6-19 (26)
13 1y4m_A HERV-FRD_6P24.1 proviru 27.3 17 0.00058 22.2 0.5 26 96-121 25-50 (53)
14 1mof_A Moloney murine leukemia 22.1 22 0.00075 21.9 0.3 26 96-121 27-52 (55)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=3.9e-39 Score=291.09 Aligned_cols=112 Identities=32% Similarity=0.519 Sum_probs=107.2
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+......+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 367 ~IN~~l~~~~~~~~~IGvLDI~GFE~f~~---------------------NsFEQlcINy~NEkLQq~F~~~~f~~Eqee 425 (697)
T 1lkx_A 367 KINTIINCTTEKGPVIGILDIYGFEVFQN---------------------NSFEQLNINFCNEKLQQLFIELTLKSEQEE 425 (697)
T ss_dssp HHHHHHCCCSCCCCEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHhhcCCCCCCceeEEeeccccccccCc---------------------CCHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 78999988877889999999999999996 999999999999999999999999999999
Q ss_pred hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
|.+|||+|.+++|.||++|+|||++||.|||+||||||++|++ ||++|++|+.
T Consensus 426 Y~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~-----------tD~~f~~kl~ 478 (697)
T 1lkx_A 426 YVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKS-----------TDQTFLDSIC 478 (697)
T ss_dssp HHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTC-----------CHHHHHHHHH
T ss_pred HHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCC-----------ChHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 8999999873
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.1e-38 Score=289.22 Aligned_cols=111 Identities=30% Similarity=0.541 Sum_probs=104.7
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++... ....+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 434 ~IN~~l~~~-~~~~~IGvLDI~GFE~f~~---------------------NsFEQlcINyaNEkLQq~F~~~~f~~Eqee 491 (784)
T 2v26_A 434 RVNQCFPFE-TSSYFIGVLDIAGFEYFEH---------------------NSFEQFCINYCNEKLQQFFNERILKEEQEL 491 (784)
T ss_dssp HHHTTSCCS-CCSEEEEEEECCCCCCCSS---------------------CCHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhcCcc-cccceeeecccCCcccCCc---------------------CCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 799999754 4578999999999999995 999999999999999999999999999999
Q ss_pred hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
|.+|||+|.+++|.||++|+|||++||.|||+||||||++|++ ||++|++||.
T Consensus 492 Y~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~-----------tD~~f~~kl~ 544 (784)
T 2v26_A 492 YQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP-----------SDQHFTSAVH 544 (784)
T ss_dssp HHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC-----------CHHHHHHHHH
T ss_pred HHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCC-----------ChHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 8999998863
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.2e-38 Score=289.47 Aligned_cols=111 Identities=40% Similarity=0.683 Sum_probs=106.3
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+......+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 418 ~IN~~l~~~~~~~~~IGvLDI~GFE~f~~---------------------NsFEQlcINyaNEkLQq~Fn~~~F~~Eqee 476 (795)
T 1w7j_A 418 HVNKALHSTVKQHSFIGVLDIYGFETFEI---------------------NSFEQFCINYANEKLQQQFNMHVFKLEQEE 476 (795)
T ss_dssp HHHHHHCCSSCCSEEEEEEECCCCCCCSS---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccccceEEeeccCcccccCc---------------------CCHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 78999998888889999999999999995 999999999999999999999999999999
Q ss_pred hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
|.+|||+|.+++|.||++|+|||++| .|||+||||||++|+| ||++|++||.
T Consensus 477 Y~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~-----------tD~~f~~kl~ 528 (795)
T 1w7j_A 477 YMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG-----------SDDTWAQKLY 528 (795)
T ss_dssp HHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTC-----------CHHHHHHHHH
T ss_pred HHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCC-----------ChHHHHHHHH
Confidence 99999999999999999999999987 8999999999999987 9999999873
No 4
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2.6e-38 Score=288.52 Aligned_cols=110 Identities=38% Similarity=0.712 Sum_probs=104.2
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+......+||||||||||+|+. |+|||||||||||+||++|++|+|+.||+|
T Consensus 442 ~IN~~l~~~~~~~~~IGvLDI~GFE~f~~---------------------NsFEQlCINyaNEkLQq~Fn~~~F~~Eqee 500 (783)
T 4db1_A 442 RINATLETKQPRQYFIGVLDIAGFEIFDF---------------------NSFEQLCINFTNEKLQQFFNHHMFVLEQEE 500 (783)
T ss_dssp HHHHHHCCSCCCSEEEEEEECCCCCCCSS---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCceEEEecccccccccc---------------------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 79999998888889999999999999996 999999999999999999999999999999
Q ss_pred hhhcCceeeeccc-CChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252 82 YNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI 144 (146)
Q Consensus 82 y~~EgI~~~~i~~-~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~ 144 (146)
|.+|||+|..++| .||++|+|||++ |.|||+||||||++|++ ||++|++||
T Consensus 501 Y~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~-----------tD~tf~~kl 552 (783)
T 4db1_A 501 YKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKA-----------TDMTFKAKL 552 (783)
T ss_dssp HHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTC-----------CHHHHHHHH
T ss_pred hhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCC-----------CHHHHHHHH
Confidence 9999999999999 599999999995 89999999999999987 999999987
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=7.5e-38 Score=284.98 Aligned_cols=110 Identities=39% Similarity=0.727 Sum_probs=104.2
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+.++ ..+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 436 ~IN~~l~~~~~-~~~IGvLDI~GFE~F~~---------------------NsFEQlCINyaNEkLQq~Fn~~~f~~Eqee 493 (770)
T 1w9i_A 436 KINNVLCQERK-AYFIGVLDIYGFEIFKV---------------------NSFEQLCINYTNEKLQQFFNHHMFKLEQEE 493 (770)
T ss_dssp HHHHHHCCSCC-SEEEEEEECCCCCCCSS---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-CCeeeeccCcccccccc---------------------CCHHHHHHHhhHHHHHHHHHhhhhHHHHHH
Confidence 78999987766 88999999999999996 999999999999999999999999999999
Q ss_pred hhhcCceeeeccc-CChHHHHHHHhc-CCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252 82 YNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI 144 (146)
Q Consensus 82 y~~EgI~~~~i~~-~dn~~~ldLi~~-kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~ 144 (146)
|.+|||+|..++| .||++|+|||++ +|.|||+||||||++|++ ||++|++||
T Consensus 494 Y~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~-----------tD~~f~~kL 547 (770)
T 1w9i_A 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNA-----------TDNTLITKL 547 (770)
T ss_dssp HHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSC-----------CHHHHHHHH
T ss_pred hhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCC-----------ChHHHHHHH
Confidence 9999999999999 599999999998 499999999999999987 999999985
No 6
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.8e-37 Score=289.70 Aligned_cols=110 Identities=30% Similarity=0.544 Sum_probs=104.5
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++..+ ....+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 438 ~IN~~l~~~-~~~~~IGILDI~GFE~f~~---------------------NsFEQLCINyaNEkLQq~Fn~~vF~~Eqee 495 (1052)
T 4anj_A 438 RVNQCFPFE-TSSYFIGVLDIAGFEYFEH---------------------NSFEQFCINYCNEKLQQFFNERILKEEQEL 495 (1052)
T ss_dssp HHHTTSCCS-CCSEEEEEEECCCCCCCSS---------------------CCHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhcccccc-cccceEEEEecCCCccccc---------------------CcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 799999765 4567999999999999996 999999999999999999999999999999
Q ss_pred hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252 82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI 144 (146)
Q Consensus 82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~ 144 (146)
|.+|||+|.+|+|.||++|+|||++||.|||+||||||++|++ ||++|++||
T Consensus 496 Y~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~-----------tD~~f~~kl 547 (1052)
T 4anj_A 496 YQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP-----------SDQHFTSAV 547 (1052)
T ss_dssp HHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC-----------CHHHHHHHH
T ss_pred HHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCC-----------cHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 899999887
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=8.1e-38 Score=286.92 Aligned_cols=110 Identities=39% Similarity=0.727 Sum_probs=104.9
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+......+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 441 ~IN~~l~~~~~~~~~IGvLDI~GFE~f~~---------------------NsFEQlcINyaNEkLQq~Fn~~~f~~Eqee 499 (837)
T 1kk8_A 441 RVNKTLDTKAKRNYYIGVLDIAGFEIFDF---------------------NSFEQLCINYTNERLQQFFNHHMFILEQEE 499 (837)
T ss_dssp HHHHHHCCCCCCCEEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCcceEEEEecCCcccccc---------------------ccHHHHHHHHhhHHHHHHHHHhhhHHHHHH
Confidence 78999998778889999999999999995 999999999999999999999999999999
Q ss_pred hhhcCceeeeccc-CChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252 82 YNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI 144 (146)
Q Consensus 82 y~~EgI~~~~i~~-~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~ 144 (146)
|.+|||+|.+++| .||++|+|||++ |.|||+||||||++|++ ||++|++||
T Consensus 500 Y~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~-----------tD~tf~~kl 551 (837)
T 1kk8_A 500 YKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKA-----------DDKSFQDKL 551 (837)
T ss_dssp HHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTC-----------CHHHHHHHH
T ss_pred hhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCC-----------ChHHHHHHH
Confidence 9999999999999 599999999996 89999999999999987 999999985
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.8e-37 Score=290.60 Aligned_cols=111 Identities=40% Similarity=0.683 Sum_probs=106.1
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+......+||||||||||+|+. |+|||||||||||+||++|++|+|+.||++
T Consensus 418 ~iN~~l~~~~~~~~~IgvLDI~GFE~f~~---------------------NsFEQlcINy~NEkLQq~F~~~~f~~Eqee 476 (1080)
T 2dfs_A 418 HVNKALHSTVKQHSFIGVLDIYGFETFEI---------------------NSFEQFCINYANEKLQQQFNMHVFKLEQEE 476 (1080)
T ss_dssp HHHHHHCCSSCCCEEEEEEEECCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCceEEeeccCCccccCc---------------------CCHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 78999998888889999999999999996 999999999999999999999999999999
Q ss_pred hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
|.+|||+|.+++|.||++|+|||++| .|||+||||||++|+| ||++|++||.
T Consensus 477 Y~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~-----------tD~~f~~kl~ 528 (1080)
T 2dfs_A 477 YMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG-----------SDDTWAQKLY 528 (1080)
T ss_dssp HHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTC-----------CHHHHHHHHH
T ss_pred HhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCC-----------ChHHHHHHHH
Confidence 99999999999999999999999986 8999999999999987 8999999873
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=4.1e-37 Score=286.41 Aligned_cols=111 Identities=41% Similarity=0.695 Sum_probs=105.0
Q ss_pred CcCCCCCCCCC-CCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHh
Q psy11252 2 RLGSGCGKDQR-EDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQE 80 (146)
Q Consensus 2 ~in~~~~~~~~-~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~e 80 (146)
|||+++.+.++ ...+||||||||||+|+. |+|||||||||||+||++|++++|+.||+
T Consensus 413 ~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~---------------------NsfEQlcINy~NEkLQq~F~~~~f~~Eqe 471 (995)
T 2ycu_A 413 RLNRALDRSPRQGASFLGILDIAGFEIFQL---------------------NSFEQLCINYTNEKLQQLFNHTMFVLEQE 471 (995)
T ss_dssp HHHHHHCCCSCCCSEEEEEEECCCBCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhcCCCCCccceEEEecccccccccc---------------------chHHHHHHHhhHHHHHHHHHHhhhHHHHH
Confidence 78999987766 789999999999999995 99999999999999999999999999999
Q ss_pred hhhhcCceeeeccc-CChHHHHHHHhc--CCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252 81 EYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI 144 (146)
Q Consensus 81 ey~~EgI~~~~i~~-~dn~~~ldLi~~--kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~ 144 (146)
||.+|||+|.+|+| .||++|+|||++ +|.|||+||||||++|+| ||++|++||
T Consensus 472 eY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~-----------tD~~f~~kl 527 (995)
T 2ycu_A 472 EYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKA-----------TDKSFVEKV 527 (995)
T ss_dssp HHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTC-----------CHHHHHHHH
T ss_pred HHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCC-----------chHHHHHHH
Confidence 99999999999999 699999999997 489999999999999987 999999986
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.6e-36 Score=285.58 Aligned_cols=111 Identities=40% Similarity=0.684 Sum_probs=100.6
Q ss_pred CcCCCCCCC-CCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHh
Q psy11252 2 RLGSGCGKD-QREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQE 80 (146)
Q Consensus 2 ~in~~~~~~-~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~e 80 (146)
|||+++.+. .....+||||||||||+|+. |+|||||||||||+||++|++|+|+.+|+
T Consensus 444 ~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~---------------------NsfeQlciNy~nEkLq~~f~~~~f~~eq~ 502 (1184)
T 1i84_S 444 RVNKALDKTKRQGASFLGILDIAGFEIFEI---------------------NSFEQLCINYTNEKLQQLFNHTMFILEQE 502 (1184)
T ss_dssp HHTTTCC------CEEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhhCCCccCCcceEEEeecCCcCCCCc---------------------chHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 799999886 56788999999999999996 99999999999999999999999999999
Q ss_pred hhhhcCceeeeccc-CChHHHHHHHhcCCC---cccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 81 EYNKEGIRWRHIEF-SDNTLCLQLVEGKPN---GLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 81 ey~~EgI~~~~i~~-~dn~~~ldLi~~kp~---GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
+|.+|||+|.+|+| .||++|+|||++ |. |||+||||||++|+| ||++|++||.
T Consensus 503 ey~~Egi~~~~i~~~~dn~~~~~lie~-~~~~~Gil~lLdee~~~p~~-----------td~~~~~kl~ 559 (1184)
T 1i84_S 503 EYQREGIEWNFIDFGLDLQPCIELIER-PTNPPGVLALLDEECWFPKA-----------TDTSFVEKLI 559 (1184)
T ss_dssp HHHHHTCSCCCCCCCCCCHHHHHTTSC-CSSSCCHHHHHHHTTSCTTC-----------CHHHHHHHHH
T ss_pred HHHhcCCCccccccCCCcHHHHHHHhC-CCCCCCchhhhhhhhCCCCC-----------ChHHHHHHHH
Confidence 99999999999999 699999999996 55 999999999999987 8999999873
No 11
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1.5e-36 Score=283.00 Aligned_cols=111 Identities=39% Similarity=0.687 Sum_probs=104.5
Q ss_pred CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252 2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE 81 (146)
Q Consensus 2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee 81 (146)
|||+++.+.+ ...+||||||||||+|+. |+|||||||||||+||++|++++|+.||+|
T Consensus 436 ~IN~~l~~~~-~~~~IgvLDI~GFE~f~~---------------------NsfEQlcINy~NEkLQq~F~~~~f~~Eqee 493 (1010)
T 1g8x_A 436 KINNVLCSER-KAYFIGVLDISGFEIFKV---------------------NSFEQLCINYTNEKLQQFFNHHMFKVEQEE 493 (1010)
T ss_dssp HHHHHHCCSS-CSEEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-cCceeeeccCcccccCCc---------------------CcHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 7899888766 778999999999999995 999999999999999999999999999999
Q ss_pred hhhcCceeeeccc-CChHHHHHHHhc-CCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252 82 YNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK 145 (146)
Q Consensus 82 y~~EgI~~~~i~~-~dn~~~ldLi~~-kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~ 145 (146)
|.+|||+|.+++| .||++|+|||++ +|.|||+||||||++|+| ||++|++|+.
T Consensus 494 Y~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~-----------td~~f~~kl~ 548 (1010)
T 1g8x_A 494 YLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNA-----------TDNTLITKLH 548 (1010)
T ss_dssp HHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSC-----------CHHHHHHHHH
T ss_pred hhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCC-----------ChHHHHHHHH
Confidence 9999999999999 599999999998 499999999999999987 9999999863
No 12
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=34.71 E-value=17 Score=18.93 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=10.4
Q ss_pred CCCcccHHHHHHhh
Q psy11252 131 NPGVFTVASLILKI 144 (146)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (146)
..|-.|.++|+.+|
T Consensus 6 ~~g~~TLesFFK~L 19 (26)
T 2zvk_U 6 PEGMQTLESFFKPL 19 (26)
T ss_pred ccccccHHHHhccC
Confidence 34556999999876
No 13
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=27.31 E-value=17 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.0
Q ss_pred ChHHHHHHHhcCCCcccccchhhhcc
Q psy11252 96 DNTLCLQLVEGKPNGLLCVLDDQAKR 121 (146)
Q Consensus 96 dn~~~ldLi~~kp~GlL~lLDee~~~ 121 (146)
.|...+|++..+..|+=..|.|+|.|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57889999988889999999999986
No 14
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=22.13 E-value=22 Score=21.88 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.8
Q ss_pred ChHHHHHHHhcCCCcccccchhhhcc
Q psy11252 96 DNTLCLQLVEGKPNGLLCVLDDQAKR 121 (146)
Q Consensus 96 dn~~~ldLi~~kp~GlL~lLDee~~~ 121 (146)
.|...+|++..+..|+=..|.|+|.|
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 57889999888889999999999986
Done!