RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11252
(146 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 128 bits (324), Expect = 1e-35
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 114 VLDDQAKR 121
+LD++ +
Sbjct: 524 ILDEENRL 531
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 126 bits (318), Expect = 1e-34
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 114 VLDDQ 118
+LD+
Sbjct: 458 LLDEA 462
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 125 bits (315), Expect = 2e-34
Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 114 VLDDQAKR 121
+LD++ K
Sbjct: 508 LLDEECKM 515
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 122 bits (308), Expect = 2e-33
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 114 VLDDQ 118
+LD++
Sbjct: 508 LLDEE 512
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 118 bits (298), Expect = 4e-32
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 110
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 111 LLCVLDDQAKR 121
LL +LD++
Sbjct: 505 LLALLDEECWF 515
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 118 bits (297), Expect = 7e-32
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 111
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 112 LCVLDDQ 118
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 116 bits (294), Expect = 2e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 111
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 112 LCVLDDQ 118
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 116 bits (292), Expect = 3e-31
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 110
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 111 LLCVLDDQAKR 121
+L +LD++
Sbjct: 536 VLALLDEECWF 546
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 116 bits (292), Expect = 3e-31
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 51 HHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPN 109
+ FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP
Sbjct: 469 FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPM 527
Query: 110 GLLCVLDDQAKR 121
G+L +L+++
Sbjct: 528 GILSILEEECMF 539
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 115 bits (291), Expect = 4e-31
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 112
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 113 CVLDDQ 118
+L+++
Sbjct: 532 SILEEE 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.027
Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 37/121 (30%)
Query: 6 GCGK-----DQREDKKLPPEDVFGFS----SLGFTEKPHEHHLSVYVPTTYSYFHHCFEQ 56
G GK D K+ + F +L P E
Sbjct: 160 GSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPET----------------VLEM 201
Query: 57 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 116
L + L Y + + + I+ R L + N LL VL
Sbjct: 202 L------QKLLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLL 251
Query: 117 D 117
+
Sbjct: 252 N 252
Score = 29.8 bits (66), Expect = 0.29
Identities = 19/128 (14%), Positives = 30/128 (23%), Gaps = 31/128 (24%)
Query: 15 KKLPPEDVFGFSSLGFTEKPH-----EHH---LSVYVPTTYSYFHHCFEQLCINYANEHL 66
+K P E S+ K H + Y Y H+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 67 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK----------PNGLLCVLD 116
+ H+ E E R F L + +E K +L L
Sbjct: 478 GH----HLKNIEHPE--------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 117 DQAK-RKF 123
+ +
Sbjct: 526 QLKFYKPY 533
Score = 26.4 bits (57), Expect = 5.4
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 9 KDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQY 68
+D P D + +S +G HHL F +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIG-------HHLKNIEHPERMTL---FRMV----------- 496
Query: 69 YFNQHVFQYEQEEYNKEGIRWRHIEFSDNTL 99
+ + F++ +++ + W NTL
Sbjct: 497 FLD---FRFLEQKIRHDSTAWNASGSILNTL 524
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 27.0 bits (59), Expect = 2.0
Identities = 13/88 (14%), Positives = 17/88 (19%), Gaps = 13/88 (14%)
Query: 17 LPPEDVFGFSSLGFTEKPHEHHLSVY------VPTTYSYFHHCFEQLCINYANEHLQYYF 70
L V LG P V S C +
Sbjct: 32 LSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVP- 90
Query: 71 NQHVFQYEQEEYNKEGIRWRHIEFSDNT 98
+ Y + GI H +D
Sbjct: 91 ------NLLDLYQQCGIITHHHPIADGG 112
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 4.1
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 63 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 96
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 25.9 bits (58), Expect = 6.0
Identities = 5/30 (16%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 17 LPPEDVFG-FSSLGFTEKPHEHHLSVYVPT 45
P + LG + V P+
Sbjct: 419 YPEAEQIAILKRLGCRVEGEGPTYRVTPPS 448
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 25.5 bits (57), Expect = 8.3
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 15 KKLPPEDVFG-FSSLGFTEKPHEHHLSVYVPT 45
+ E V LG + P+
Sbjct: 419 HHIADEQVTDILRRLGCEVTEGKDEWQAVAPS 450
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.447
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,386,786
Number of extensions: 132330
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 24
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)