RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11252
(146 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 74.7 bits (183), Expect = 4e-17
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 48 SYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 107
+ ++ FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E K
Sbjct: 384 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKK 443
Query: 108 PNGLLCVLDDQAKRKFG 124
P GL+ +LD+
Sbjct: 444 PIGLISLLDEACLIAKS 460
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 72.8 bits (178), Expect = 2e-16
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 51 HHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 110
+ FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G
Sbjct: 423 FNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMG 482
Query: 111 LLCVLDDQAKRKFG 124
+ +L+++
Sbjct: 483 IFSILEEECMFPKA 496
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 72.1 bits (176), Expect = 3e-16
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 48 SYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 107
+ + FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + K
Sbjct: 418 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK 477
Query: 108 PNGLLCVLDDQAKR 121
P G+L +L+++
Sbjct: 478 PMGILSILEEECMF 491
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 70.9 bits (173), Expect = 9e-16
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 26 SSLGFTEKPHEHHLSVY-VPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNK 84
+L T++ L + + + + FEQLCINY NE LQ FN +F EQEEY +
Sbjct: 369 KALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQR 428
Query: 85 EGIRWRHIEFS-DNTLCLQLVEG--KPNGLLCVLDDQAKRKFG 124
EGI W I+F D C++L+E P G+L +LD++
Sbjct: 429 EGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKA 471
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 69.0 bits (168), Expect = 4e-15
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 26 SSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 85
+L T K H + + ++ + FEQ CINYANE LQ FN HVF+ EQEEY KE
Sbjct: 359 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKE 418
Query: 86 GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQ 118
I W I+F DN C+ L+E K G+L +LD++
Sbjct: 419 QIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 65.5 bits (159), Expect = 5e-14
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 48 SYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG 106
+ + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G
Sbjct: 413 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDG 472
Query: 107 -KPNGLLCVLDDQ 118
+P G+L +LD+Q
Sbjct: 473 RQPPGILALLDEQ 485
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.7 bits (63), Expect = 0.24
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 32 EKPHEHHLSVYVPTTYSY------FHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 85
V P + ++L + + K
Sbjct: 204 LAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKA 263
Query: 86 GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGV 128
G +I + L+ + K L V+ ++ +FG TGV
Sbjct: 264 G-FIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGV 305
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase
small subunit, catalytic domain {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 307
Score = 25.0 bits (53), Expect = 4.7
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 28 LGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGI 87
+ F EKP L T + + Y ++ V ++
Sbjct: 184 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVM----LNLLRDKF 239
Query: 88 RWRHIEFSDNTLCLQLVEGKP 108
+ +F + G
Sbjct: 240 PGAN-DFGSEVIPGATSLGMR 259
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 24.5 bits (52), Expect = 6.1
Identities = 8/65 (12%), Positives = 16/65 (24%)
Query: 30 FTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 89
+ + V S + + E L + + GI
Sbjct: 98 SKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYA 157
Query: 90 RHIEF 94
+H+E
Sbjct: 158 KHLEH 162
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 24.5 bits (53), Expect = 6.1
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 59 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 97
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d2i6ca1 d.108.1.1 (A:1001-1160) Putative acetyltransferase PA4794
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 160
Score = 23.9 bits (50), Expect = 7.9
Identities = 11/63 (17%), Positives = 13/63 (20%)
Query: 29 GFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR 88
P L V + EQ + Y Q Y I
Sbjct: 80 NMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIA 139
Query: 89 WRH 91
RH
Sbjct: 140 ERH 142
>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
(Limulus polyphemus) [TaxId: 6850]}
Length = 270
Score = 23.9 bits (52), Expect = 9.3
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 33 KPHEHHLSVYVPTTYSYFHHCFEQLCINYA------NEHLQYYFNQHVFQYEQEEYNKEG 86
+P + V + E + Y N H ++ + + + + K+
Sbjct: 26 RPEFDESPILVDVQDTGNILDPEYR-LAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKK 84
Query: 87 IR 88
R
Sbjct: 85 DR 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.447
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,813
Number of extensions: 27388
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 19
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)