BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11253
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 106/125 (84%)
Query: 33 ETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDIT 92
+ ++GPRY+VG R +D++KLK G RV LD+TTLTIMR LPRE DPLVYNM+ + G+IT
Sbjct: 120 KASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEIT 179
Query: 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152
+ IGGL+EQIRELREVIELPL NPE+FQRVGI PPKG LLYGPPGTGKTLLA+AVA+ +
Sbjct: 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239
Query: 153 DANFL 157
ANF+
Sbjct: 240 GANFI 244
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 77/95 (81%), Gaps = 2/95 (2%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T+L + IG I A IVDKYIGESAR+IREMF YA++H+PCIIFMDE+DA
Sbjct: 226 TGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA 285
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515
IGGRRFSEGTSADREIQRTLMELL QMDGFD+LGQ
Sbjct: 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 85/122 (69%)
Query: 39 RYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGG 98
++VVG ++ ++ G RV +D + I LP +DP V M+ E+ D+TYS +GG
Sbjct: 154 KFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGG 213
Query: 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158
+QI +LREV+ELPLL+PE F +GI PPKG LLYGPPGTGKTL ARAVA++ DA F++
Sbjct: 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273
Query: 159 VV 160
V+
Sbjct: 274 VI 275
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 441 ILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 500
++ +V KY+GE AR++RE+F AR + CIIF DEIDA+GG RF +G D E+QRT+
Sbjct: 274 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333
Query: 501 MELLNQMDGFDSLGQ 515
+EL+ Q+DGFD G
Sbjct: 334 LELITQLDGFDPRGN 348
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 81/121 (66%)
Query: 39 RYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGG 98
+Y+V + ++ LK+ RV L + + + L + DPLV M E D TY +GG
Sbjct: 93 KYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGG 152
Query: 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158
L++QI+E++EVIELP+ +PELF+ +GI PKG +LYGPPGTGKTLLARAVA D F++
Sbjct: 153 LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212
Query: 159 V 159
V
Sbjct: 213 V 213
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 446 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 505
+V KYIGE +R++RE+F AR+H P IIFMDEID+IG R D E+QRT++ELLN
Sbjct: 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277
Query: 506 QMDGFDS 512
Q+DGF++
Sbjct: 278 QLDGFET 284
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 81/123 (65%)
Query: 38 PRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIG 97
P Y V +DK L+ G V L T++I+ L + DP+V M + +YS IG
Sbjct: 126 PDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIG 185
Query: 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157
GL QI+E++E +ELPL +PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+Q A FL
Sbjct: 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245
Query: 158 KVV 160
++V
Sbjct: 246 RIV 248
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 441 ILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 500
I+ ++ KY+G+ RL R++F A ++ P I+F+DEIDAIG +R+ + +REIQRT+
Sbjct: 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 306
Query: 501 MELLNQMDGFDSLG 514
+ELLNQ+DGFD G
Sbjct: 307 LELLNQLDGFDDRG 320
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITY 93
+T G YVV LD+ LK VAL + ++ LP + D + M + D+TY
Sbjct: 112 STTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTY 171
Query: 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153
+ +GGL Q +E+RE +ELPL+ +L++++GI PP+G LLYGPPGTGKT+L +AVA+
Sbjct: 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231
Query: 154 ANFLKV 159
A F++V
Sbjct: 232 AAFIRV 237
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V KY+GE R++R++F AR++ P IIF+DE+D+I +RF T +DRE+QR L+ELL Q
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302
Query: 507 MDGFD 511
MDGFD
Sbjct: 303 MDGFD 307
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 65/79 (82%)
Query: 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 142
M ++ ++ Y IGGL +Q++E+REV+ELPL +PELF++VGI PPKG LLYGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 143 LLARAVASQLDANFLKVVS 161
LLA+AVA++ +A F++VV
Sbjct: 66 LLAKAVATETNATFIRVVG 84
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 446 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 505
+V K+IGE A L++++F A++ P IIF+DEIDAI +R T DRE+QRTLM+LL
Sbjct: 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146
Query: 506 QMDGFDSLG 514
+MDGFD+ G
Sbjct: 147 EMDGFDARG 155
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 71/114 (62%)
Query: 48 LDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELR 107
+D KLK V ++ + I+ LP E D V M ++ TYS +GGL +QI EL
Sbjct: 135 VDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELV 194
Query: 108 EVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
E I LP+ + F+ +GI PKG L+YGPPGTGKTLLARA A+Q +A FLK+ +
Sbjct: 195 EAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 446 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 505
+V YIGE A+L+R+ F A++ P IIF+DE+DAIG +RF S DRE+QRT++ELLN
Sbjct: 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310
Query: 506 QMDGFDS 512
Q+DGF S
Sbjct: 311 QLDGFSS 317
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 45 RRQLDKAKLKSGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGDITYSAIGGLS 100
R+++D L+ T A M +L + R+ + +P + + +T+ IGGL
Sbjct: 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 101 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
+ REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 509
+ GES +RE+F+ AR PC++F DE+D+I R R + ++L +MDG
Sbjct: 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610
Query: 510 FDS 512
+
Sbjct: 611 MST 613
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 75 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134
E +P+ E ++ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GPPGTGKTL+ARAVA++ A F
Sbjct: 245 GPPGTGKTLIARAVANETGAFFF 267
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 45 RRQLDKAKLKSGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGDITYSAIGGLS 100
R+++D L+ T A M +L + R+ + +P + + +T+ IGGL
Sbjct: 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 101 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
+ REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 423 TTITILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDA 480
T T++ + +E G F LI+ I+ K GES +R+ F A + P IIF+DE+DA
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 481 IGGRRFSEGTSADREIQRTLMELLNQMDGF 510
I +R E T + E +R + +LL MDG
Sbjct: 309 IAPKR--EKTHGEVE-RRIVSQLLTLMDGL 335
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 509
+ GES +RE+F+ AR PC++F DE+D+I R R + ++L +MDG
Sbjct: 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610
Query: 510 FDS 512
+
Sbjct: 611 MST 613
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 52/69 (75%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ IGGL + REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A+
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 151 QLDANFLKV 159
+ ANF+ +
Sbjct: 72 ECQANFISI 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 509
+ GES +RE+F+ AR PC++F DE+D+I R R + ++L +MDG
Sbjct: 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148
Query: 510 FDS 512
+
Sbjct: 149 MST 151
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ +GG E I EL+EV+E L +P F R+G PKG LL GPPGTGKTLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 151 QLDANFLKV 159
+ + F +
Sbjct: 72 EANVPFFHI 80
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G R + E ++TL +LL +
Sbjct: 86 VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145
Query: 507 MDGFDS 512
MDGFDS
Sbjct: 146 MDGFDS 151
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ +GG E I EL+EV+E L +P F R+G PKG LL GPPGTG TLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 151 QLDANFLKV 159
+ + F +
Sbjct: 72 EANVPFFHI 80
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G R + E ++TL +LL +
Sbjct: 86 VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145
Query: 507 MDGFDS 512
MDGFDS
Sbjct: 146 MDGFDS 151
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 149
++T++ IG L + EL I P+ NP+ F+ +G+ P G LL GPPG GKTLLA+AVA
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 150 SQLDANFLKV 159
++ NF+ V
Sbjct: 66 NESGLNFISV 75
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 426 TILFHEIPHEIGDFAILIHA--IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483
T+L + +E G I + +++ Y+GES R +R++F A++ PC+IF DE+DA+
Sbjct: 58 TLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP 117
Query: 484 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515
RR T A R + +LL +MDG ++ Q
Sbjct: 118 RRSDRETGAS---VRVVNQLLTEMDGLEARQQ 146
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +
Sbjct: 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 145
Query: 507 MDGFD 511
MDGF+
Sbjct: 146 MDGFE 150
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 151 QLDANFL 157
+ F+
Sbjct: 72 EARVPFI 78
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +
Sbjct: 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 169
Query: 507 MDGFD 511
MDGF+
Sbjct: 170 MDGFE 174
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 151 QLDANFL 157
+ F+
Sbjct: 96 EARVPFI 102
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 79 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPP 137
L+ + E + ++ I G + L+E++ LP + PELF G+ P KG LL+GPP
Sbjct: 6 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPP 63
Query: 138 GTGKTLLARAVASQLDANFLKVVSRTI 164
G GKTLLARAVA++ A FL + + ++
Sbjct: 64 GNGKTLLARAVATECSATFLNISAASL 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 445 AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 504
++ KY+G+ +L+R +F AR QP IIF+DE+D++ R S A R ++ E L
Sbjct: 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLK---TEFL 145
Query: 505 NQMDGF 510
+ DG
Sbjct: 146 VEFDGL 151
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +
Sbjct: 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 169
Query: 507 MDGFDS 512
MDGF+
Sbjct: 170 MDGFEK 175
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 151 QLDANFL 157
+ F+
Sbjct: 96 EARVPFI 102
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 506
V+ ++G A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +
Sbjct: 101 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160
Query: 507 MDGFDS 512
MDGF+
Sbjct: 161 MDGFEK 166
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 151 QLDANFL 157
+ F+
Sbjct: 87 EARVPFI 93
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F++ +V K++GES +L++++F AR+++P IIF+DE+DA+ G R + A R I+
Sbjct: 89 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIK- 147
Query: 499 TLMELLNQMDGF--DSLG 514
ELL QM+G DS G
Sbjct: 148 --TELLVQMNGVGNDSQG 163
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 79 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPG 138
LV S + ++ + + GL L+E + LP+ P LF + P G LLYGPPG
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPG 70
Query: 139 TGKTLLARAVASQLDANFLKVVS 161
TGK+ LA+AVA++ ++ F V S
Sbjct: 71 TGKSYLAKAVATEANSTFFSVSS 93
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 79 LVYN--MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGIT-PPKGCLLYG 135
L+ N M H P + + I G+ ++E++ P+L P++F G+ PPKG LL+G
Sbjct: 69 LIMNEIMDHGPP--VNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFG 124
Query: 136 PPGTGKTLLARAVASQLDANFLKVVSRTI 164
PPGTGKTL+ + +ASQ A F + + ++
Sbjct: 125 PPGTGKTLIGKCIASQSGATFFSISASSL 153
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F+I ++ K++GE +++R +F AR QP +IF+DEID++ +R G +R
Sbjct: 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRR 202
Query: 499 TLMELLNQMDG 509
E L Q+DG
Sbjct: 203 IKTEFLVQLDG 213
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 17/109 (15%)
Query: 408 AIGASYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARD 467
G SYLA + T F F++ +V K++GES +L++++F AR+
Sbjct: 94 GTGKSYLA---KAVATEANSTF---------FSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 468 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DSLG 514
++P IIF+D++DA+ G R + A R I+ ELL QM+G DS G
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQG 187
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 149
++ + + GL L+E + LP+ P LF + P G LLYGPPGTGK+ LA+AVA
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 150 SQLDANFLKVVS 161
++ ++ F V S
Sbjct: 106 TEANSTFFSVSS 117
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F++ +V K++GES +L++++F AR+++P IIF+D++DA+ G R + A R I+
Sbjct: 80 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK- 138
Query: 499 TLMELLNQMDGF--DSLG 514
ELL QM+G DS G
Sbjct: 139 --TELLVQMNGVGNDSQG 154
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 76 VDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYG 135
+DP +S E P ++ + + GL L+E + LP+ P LF + P G LLYG
Sbjct: 2 IDPFTAILS-EKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYG 58
Query: 136 PPGTGKTLLARAVASQLDANFLKVVS 161
PPGTGK+ LA+AVA++ ++ F V S
Sbjct: 59 PPGTGKSYLAKAVATEANSTFFSVSS 84
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQ 497
F++ + ++ ++G A +R++F A+ P IIF+DEIDAIG R + G S + E +
Sbjct: 73 FSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDERE 132
Query: 498 RTLMELLNQMDGFDS 512
+TL +LL +MDGF S
Sbjct: 133 QTLNQLLAEMDGFGS 147
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 142
++ E P ++ + + G E E+ E+++ L PE + +G PKG LL GPPGTGKT
Sbjct: 1 INAEKP-NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKT 58
Query: 143 LLARAVASQLDANFLKV 159
LLA+AVA + F +
Sbjct: 59 LLAKAVAGEAHVPFFSM 75
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 142
M ED T++ + G E E+ E++E L P FQ++G PKG L+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 143 LLARAVASQLDANFLKV 159
LLA+A+A + F +
Sbjct: 60 LLAKAIAGEAKVPFFTI 76
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F I V+ ++G A +R+MF A+ PCIIF+DEIDA+G +R + E ++
Sbjct: 74 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ 133
Query: 499 TLMELLNQMDGFDS 512
TL ++L +MDGF+
Sbjct: 134 TLNQMLVEMDGFEG 147
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F++ +V K++GES +L++++F AR+++P IIF+D++DA+ G R + A R I+
Sbjct: 98 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK- 156
Query: 499 TLMELLNQMDGF--DSLG 514
ELL QM+G DS G
Sbjct: 157 --TELLVQMNGVGNDSQG 172
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 149
++ + + GL L+E + LP+ P LF + P G LLYGPPGTGK+ LA+AVA
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 150 SQLDANFLKVVS 161
++ ++ F V S
Sbjct: 91 TEANSTFFSVSS 102
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+++ + G+ E E+RE ++ L +PE F ++G PKG LL GPPG GKTLLA+AVA+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 151 QLDANFLKVV 160
+ FL +
Sbjct: 62 EAQVPFLAMA 71
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 452 GESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQMDGF 510
G A +R +F AR PCI+++DEIDA+G +R + + ++ E ++TL +LL +MDG
Sbjct: 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140
Query: 511 DS 512
+
Sbjct: 141 GT 142
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F+I +V K++GES +L++ +F AR+++P IIF+DEID++ G R + A R I+
Sbjct: 75 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK- 133
Query: 499 TLMELLNQMDG 509
E L QM G
Sbjct: 134 --TEFLVQMQG 142
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELF--QRVGITPPKGCLLYGPPGTGKTLLARA 147
++ +S + GL L+E + LP+ P LF +R TP +G LL+GPPGTGK+ LA+A
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR---TPWRGILLFGPPGTGKSYLAKA 64
Query: 148 VASQL-DANFLKVVS 161
VA++ ++ F + S
Sbjct: 65 VATEANNSTFFSISS 79
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 79 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPP 137
L+ N ++ + + I G + L+E++ LP L PELF G+ P +G LL+GPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPP 157
Query: 138 GTGKTLLARAVASQLDANFLKVVSRTI 164
G GKT+LA+AVA++ +A F + + ++
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASL 184
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F I ++ KY+GE +L+R +F AR+ QP IIF+D++D++ R A R ++
Sbjct: 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLK- 235
Query: 499 TLMELLNQMDGFDSLG 514
E L + DG S G
Sbjct: 236 --TEFLIEFDGVQSAG 249
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F+I +V K++GES +L++ +F AR+++P IIF+DEID++ G R + A R I+
Sbjct: 197 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK- 255
Query: 499 TLMELLNQMDG 509
E L QM G
Sbjct: 256 --TEFLVQMQG 264
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELF--QRVGITPPKGCLLYGPPGTGKTLLARA 147
++ +S + GL L+E + LP+ P LF +R TP +G LL+GPPGTGK+ LA+A
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR---TPWRGILLFGPPGTGKSYLAKA 186
Query: 148 VASQL-DANFLKVVSRTI 164
VA++ ++ F + S +
Sbjct: 187 VATEANNSTFFSISSSDL 204
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 33 ETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHED 87
+++ GP++VV + +++ +LK G RVAL+ TL I+ LP DP+VY E+
Sbjct: 55 KSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 33 ETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHED 87
+++ GP++VV + +++ +LK G RVAL+ TL I+ LP DP+VY E+
Sbjct: 55 KSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 115 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
LN EL V PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 39 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 453 ESARLI--REMFNYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELL 504
E+A+L+ E+ A D Q I+F+DEID I R S G RE +QR L+ L+
Sbjct: 228 EAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLV 284
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 115 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
LN EL V PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 46 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 87
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 453 ESARLI--REMFNYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELL 504
E+A+L+ E+ A D Q I+F+DEID I R S G RE +QR L+ L+
Sbjct: 235 EAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLV 291
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 115 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
LN EL V PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 40 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 453 ESARLI--REMFNYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELL 504
E+A+L+ E+ A D Q I+F+DEID I R S G RE +QR L+ L+
Sbjct: 229 EAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLV 285
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
P + LL+GPPG GKT LA +A +L N L+V S
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTS 70
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVI 173
+L+GPPGTGKT LA +A +A+ ++ + T + I I
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAI 95
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155
+ LL GPPGTGKT LA A+A +L +
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSK 90
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
P + LL+GPPG GKT LA +A +L N L+V S
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTS 70
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
PK L GP G GKT +AR +A +A F+KV
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 129 KGCLLYGPPGTGKTLLARAVASQLDANF 156
+ LL GPPGTGKT LA A+A +L +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG GKT LA +AS+L N
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG GKT LA +AS+L N
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG GKT LA +AS+L N
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG GKT LA +AS+L N
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG GKT LA +AS+L N
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
P + LL+GPPG GKT LA +A +L N L+V S
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTS 70
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKV 159
L GPPG GKT LA+++A L F+++
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 124 GITPPKGC--LLYGPPGTGKTLLARAVASQLDA 154
+ PKG L+ G PGTGKT +A +A++LD
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDG 36
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANF 156
LL GPPG G+T LA +AS+L N
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNI 79
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
TP LL GPP +GKT LA +A + + F+K+ S
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 96
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161
TP LL GPP +GKT LA +A + + F+K+ S
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158
+ +LYGPPG GKT A VA +L + L+
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILE 107
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDAN 155
P LLYG GTGKT +AR V +L+A
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEAR 71
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 132 LLYGPPGTGKTLLARAVASQLD 153
LL GP G+GKTL+A+ +A LD
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLD 97
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 431 EIPHEIGDFAILIHAIVDKYIGES-----ARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485
+IP I D L A Y+GE RL++ + Q I+F+DEID I R
Sbjct: 97 DIPIAISDATSLTEA---GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS--R 151
Query: 486 FSEGTSADREI 496
SE S R++
Sbjct: 152 LSENRSITRDV 162
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANF 156
LL GP G+GKTLLA +A LD F
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANF 156
LL GP G+GKTLLA +A LD F
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 101 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157
+QIR++ ++ PL E P +YG GTGKT + + V S+L FL
Sbjct: 27 DQIRKIASILA-PLYREE--------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 452 GESARLIREMFNYA----RDHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL 503
GE A+LIR+ + A R C +F++++DA GR ++ T ++ + TLM +
Sbjct: 78 GEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 135
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 33 ETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLP 73
+++ GP ++V ++ L G RV L+ TLT++ LP
Sbjct: 36 KSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 132 LLYGPPGTGKTLLARAVASQL 152
L YGPPGTGKT A+A ++
Sbjct: 50 LFYGPPGTGKTSTIVALAREI 70
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GP GTGK+ +A+ +A QL A++L
Sbjct: 11 GPSGTGKSSVAKELARQLGASYL 33
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 132 LLYGPPGTGKTLLARAVASQL 152
L YGPPGTGKT A+ +L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 109 VIELPLLNPELFQRVGITPPK--GCLLYGPPGTGKTLLARAVAS 150
V+ L+ P ++Q V K CL+ P G GKTL+A +A
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE 45
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 124 GITPPK---GCLLY-GPPGTGKTLLARAVASQL 152
G+ PK G ++ GP G GKT LARA+A +
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158
LL G PGTGK++L +A+A L L+
Sbjct: 63 VLLIGEPGTGKSMLGQAMAELLPTETLE 90
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 118 ELFQ-RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163
EL Q + + P LL G PG+GKT L A+ + N + + + T
Sbjct: 22 ELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,419,837
Number of Sequences: 62578
Number of extensions: 505469
Number of successful extensions: 1417
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 134
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)