Query psy11253
Match_columns 515
No_of_seqs 483 out of 4599
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2.5E-49 5.4E-54 405.2 22.9 377 87-514 183-646 (802)
2 COG1222 RPT1 ATP-dependent 26S 100.0 3.6E-46 7.9E-51 363.3 18.0 130 34-163 91-220 (406)
3 KOG0730|consensus 100.0 1.3E-41 2.9E-46 353.6 13.0 352 89-514 180-569 (693)
4 KOG0727|consensus 100.0 1.2E-40 2.6E-45 309.5 16.5 130 34-163 95-224 (408)
5 KOG0726|consensus 100.0 3.4E-36 7.4E-41 284.9 15.6 126 34-159 125-250 (440)
6 KOG0728|consensus 100.0 4.3E-34 9.3E-39 265.6 17.0 132 34-165 87-218 (404)
7 KOG0652|consensus 100.0 4.9E-34 1.1E-38 266.6 13.8 123 34-156 111-233 (424)
8 KOG0651|consensus 100.0 3.1E-33 6.6E-38 267.4 14.5 127 34-161 73-199 (388)
9 TIGR01243 CDC48 AAA family ATP 100.0 4.3E-33 9.3E-38 311.7 16.2 376 87-513 171-588 (733)
10 KOG0729|consensus 100.0 1.1E-32 2.5E-37 258.1 11.2 129 34-162 107-245 (435)
11 KOG0736|consensus 100.0 1.1E-30 2.3E-35 274.7 7.6 137 375-512 662-806 (953)
12 KOG0738|consensus 99.9 5.8E-28 1.3E-32 237.4 11.2 79 82-161 200-278 (491)
13 KOG0735|consensus 99.9 1.7E-28 3.7E-33 255.9 6.7 130 382-514 664-802 (952)
14 PTZ00454 26S protease regulato 99.9 1.1E-26 2.3E-31 240.4 13.1 155 34-188 85-258 (398)
15 PTZ00361 26 proteosome regulat 99.9 4.7E-26 1E-30 237.1 10.8 158 34-191 123-299 (438)
16 KOG0730|consensus 99.9 1.2E-25 2.5E-30 234.9 5.6 173 4-186 350-545 (693)
17 KOG0736|consensus 99.9 2E-24 4.3E-29 227.7 9.3 111 83-194 661-790 (953)
18 KOG0733|consensus 99.9 2.1E-24 4.4E-29 222.5 7.2 113 76-188 493-624 (802)
19 COG0464 SpoVK ATPases of the A 99.9 7.4E-24 1.6E-28 227.9 10.3 134 378-514 235-377 (494)
20 PRK03992 proteasome-activating 99.9 1.5E-23 3.3E-28 217.9 11.6 157 34-190 71-246 (389)
21 KOG0731|consensus 99.9 5.8E-23 1.3E-27 220.9 13.0 78 86-164 303-380 (774)
22 TIGR01242 26Sp45 26S proteasom 99.9 1.4E-22 3E-27 209.6 11.5 155 34-188 62-235 (364)
23 TIGR03689 pup_AAA proteasome A 99.9 5E-22 1.1E-26 209.7 8.9 150 34-186 125-307 (512)
24 KOG2693|consensus 99.9 4E-22 8.7E-27 205.9 6.0 251 222-479 129-390 (453)
25 KOG0739|consensus 99.8 1.1E-20 2.4E-25 180.3 11.9 132 375-513 123-266 (439)
26 KOG0739|consensus 99.8 5.8E-21 1.3E-25 182.2 9.0 104 82-186 121-243 (439)
27 KOG2694|consensus 99.8 2.5E-20 5.4E-25 173.0 8.1 216 224-464 66-286 (361)
28 KOG0734|consensus 99.8 5.6E-20 1.2E-24 187.3 8.9 123 389-514 312-438 (752)
29 KOG0737|consensus 99.8 4E-20 8.7E-25 182.4 6.3 159 83-263 81-274 (386)
30 KOG0735|consensus 99.8 4.7E-20 1E-24 193.2 6.9 124 67-190 640-782 (952)
31 KOG0741|consensus 99.8 1.4E-18 3E-23 177.0 14.9 140 50-191 177-347 (744)
32 KOG0734|consensus 99.8 3.4E-19 7.4E-24 181.6 7.2 102 86-188 296-416 (752)
33 COG0465 HflB ATP-dependent Zn 99.7 5.2E-18 1.1E-22 180.0 9.0 125 389-513 158-286 (596)
34 PF02535 Zip: ZIP Zinc transpo 99.7 1.9E-17 4.2E-22 168.1 9.7 230 225-467 3-244 (317)
35 COG0464 SpoVK ATPases of the A 99.7 6.8E-18 1.5E-22 181.7 6.5 108 83-190 231-357 (494)
36 COG1223 Predicted ATPase (AAA+ 99.7 5.9E-18 1.3E-22 159.1 3.6 99 86-188 113-230 (368)
37 COG1223 Predicted ATPase (AAA+ 99.7 2.4E-17 5.2E-22 155.0 6.0 103 409-513 146-252 (368)
38 TIGR01243 CDC48 AAA family ATP 99.7 3.3E-17 7.2E-22 183.9 6.7 110 78-187 437-565 (733)
39 PLN00020 ribulose bisphosphate 99.7 1.3E-16 2.8E-21 159.3 8.9 99 409-510 143-251 (413)
40 COG0465 HflB ATP-dependent Zn 99.6 1.7E-16 3.8E-21 168.5 4.9 106 84-190 140-264 (596)
41 TIGR01241 FtsH_fam ATP-depende 99.6 8.6E-16 1.9E-20 165.2 5.6 102 85-187 46-166 (495)
42 KOG0740|consensus 99.6 7.2E-16 1.6E-20 157.6 3.8 106 79-185 138-262 (428)
43 CHL00195 ycf46 Ycf46; Provisio 99.6 1.4E-15 3E-20 161.2 5.8 96 88-186 222-336 (489)
44 PTZ00454 26S protease regulato 99.6 8.3E-15 1.8E-19 152.1 8.9 135 379-513 139-282 (398)
45 KOG0740|consensus 99.5 7.3E-15 1.6E-19 150.3 8.1 135 377-514 145-287 (428)
46 KOG0737|consensus 99.5 1.3E-14 2.9E-19 143.6 8.2 131 381-514 88-228 (386)
47 KOG0741|consensus 99.5 3.8E-15 8.3E-20 152.2 4.0 106 409-515 251-369 (744)
48 CHL00176 ftsH cell division pr 99.5 1.3E-14 2.9E-19 158.3 6.1 101 87-188 176-295 (638)
49 TIGR01241 FtsH_fam ATP-depende 99.5 2.7E-14 5.8E-19 153.6 7.5 134 381-514 51-192 (495)
50 PRK04201 zinc transporter ZupT 99.5 1.1E-14 2.4E-19 143.6 3.6 153 252-450 29-181 (265)
51 PRK03992 proteasome-activating 99.5 6.7E-14 1.5E-18 145.7 9.1 135 380-514 126-269 (389)
52 TIGR03689 pup_AAA proteasome A 99.5 1.1E-13 2.4E-18 146.6 9.2 134 379-514 176-332 (512)
53 CHL00195 ycf46 Ycf46; Provisio 99.5 8.6E-14 1.9E-18 147.6 8.3 101 408-510 253-357 (489)
54 PTZ00361 26 proteosome regulat 99.5 1E-13 2.2E-18 144.9 8.3 106 408-513 211-320 (438)
55 PLN00020 ribulose bisphosphate 99.4 7.1E-14 1.5E-18 139.9 4.4 96 89-186 110-230 (413)
56 CHL00176 ftsH cell division pr 99.4 3.5E-13 7.7E-18 147.3 8.1 124 390-513 192-319 (638)
57 KOG0732|consensus 99.4 3.9E-13 8.5E-18 149.2 5.5 100 87-186 258-381 (1080)
58 KOG0732|consensus 99.4 7.5E-13 1.6E-17 147.0 7.0 133 380-515 260-406 (1080)
59 TIGR01242 26Sp45 26S proteasom 99.3 4.3E-12 9.3E-17 131.4 7.9 106 408-513 150-259 (364)
60 KOG0743|consensus 99.3 4E-12 8.6E-17 129.5 6.5 99 91-189 198-307 (457)
61 PRK10733 hflB ATP-dependent me 99.3 6.6E-12 1.4E-16 138.6 8.7 106 408-513 179-288 (644)
62 CHL00206 ycf2 Ycf2; Provisiona 99.3 3.2E-12 6.9E-17 148.0 6.3 105 398-511 1614-1765(2281)
63 KOG0744|consensus 99.3 2.6E-12 5.7E-17 124.8 3.4 96 420-515 184-297 (423)
64 TIGR02639 ClpA ATP-dependent C 99.2 5.8E-11 1.3E-15 133.4 14.5 84 89-185 177-291 (731)
65 COG0466 Lon ATP-dependent Lon 99.2 5.8E-13 1.3E-17 141.6 -1.8 149 2-166 219-388 (782)
66 PRK10733 hflB ATP-dependent me 99.2 2E-11 4.4E-16 134.8 5.9 100 87-187 145-263 (644)
67 TIGR00763 lon ATP-dependent pr 99.2 4.6E-12 9.9E-17 143.0 0.2 150 1-164 215-383 (775)
68 COG0428 Predicted divalent hea 99.2 1.4E-11 3.1E-16 121.0 3.5 146 253-449 34-179 (266)
69 KOG0742|consensus 99.1 2.7E-11 5.9E-16 120.9 4.1 153 88-263 349-528 (630)
70 CHL00181 cbbX CbbX; Provisiona 99.1 4E-11 8.6E-16 119.7 4.7 91 93-184 22-138 (287)
71 KOG2004|consensus 99.1 3.8E-11 8.2E-16 127.3 3.7 153 4-165 308-475 (906)
72 CHL00206 ycf2 Ycf2; Provisiona 99.1 4.7E-11 1E-15 138.6 4.3 52 114-165 1616-1667(2281)
73 TIGR00820 zip ZIP zinc/iron tr 99.1 2E-10 4.3E-15 116.4 8.3 179 255-450 49-229 (324)
74 PF00004 AAA: ATPase family as 99.1 4.3E-10 9.3E-15 98.4 8.5 92 419-513 4-99 (132)
75 TIGR02880 cbbX_cfxQ probable R 99.0 1.8E-10 3.9E-15 115.0 5.7 89 95-184 23-137 (284)
76 PLN02159 Fe(2+) transport prot 99.0 8.7E-11 1.9E-15 118.8 3.2 162 254-450 76-242 (337)
77 PF05496 RuvB_N: Holliday junc 99.0 2.6E-10 5.6E-15 107.5 5.9 71 88-166 18-88 (233)
78 TIGR02881 spore_V_K stage V sp 99.0 2.6E-10 5.7E-15 112.6 4.8 88 93-181 5-118 (261)
79 KOG0744|consensus 99.0 8.7E-11 1.9E-15 114.3 0.8 100 92-191 140-273 (423)
80 PRK11034 clpA ATP-dependent Cl 99.0 2.8E-09 6.1E-14 118.9 12.0 82 91-185 183-295 (758)
81 TIGR02903 spore_lon_C ATP-depe 99.0 3.6E-10 7.9E-15 124.1 4.5 145 2-164 58-221 (615)
82 CHL00095 clpC Clp protease ATP 98.9 3.5E-09 7.5E-14 120.6 10.8 83 90-185 175-288 (821)
83 KOG1558|consensus 98.8 2.7E-08 5.8E-13 99.9 11.7 173 253-438 47-222 (327)
84 PRK10787 DNA-binding ATP-depen 98.8 5.4E-10 1.2E-14 125.4 -1.7 150 1-164 217-385 (784)
85 PF00004 AAA: ATPase family as 98.8 2.7E-09 5.8E-14 93.4 2.3 54 131-184 1-74 (132)
86 KOG0742|consensus 98.8 7.4E-09 1.6E-13 103.8 5.5 87 418-506 389-478 (630)
87 TIGR00390 hslU ATP-dependent p 98.7 6.9E-09 1.5E-13 106.6 4.6 91 95-185 13-118 (441)
88 COG2255 RuvB Holliday junction 98.7 1.6E-08 3.6E-13 97.4 5.1 71 88-166 20-90 (332)
89 PRK04195 replication factor C 98.7 1.7E-08 3.6E-13 108.5 5.2 73 84-165 4-76 (482)
90 PRK00080 ruvB Holliday junctio 98.6 2.8E-08 6E-13 101.6 5.2 71 87-165 18-88 (328)
91 TIGR00635 ruvB Holliday juncti 98.6 2.1E-08 4.6E-13 101.3 4.2 66 92-165 2-67 (305)
92 PRK05342 clpX ATP-dependent pr 98.6 3.1E-08 6.7E-13 103.5 4.3 71 95-165 72-145 (412)
93 TIGR02881 spore_V_K stage V sp 98.5 1.9E-07 4.1E-12 92.3 6.1 84 419-511 48-141 (261)
94 COG2256 MGS1 ATPase related to 98.5 2.1E-07 4.4E-12 94.0 6.2 65 89-166 19-86 (436)
95 TIGR00382 clpX endopeptidase C 98.5 1.8E-07 3.9E-12 97.4 5.6 71 95-165 78-153 (413)
96 KOG0989|consensus 98.5 1.6E-07 3.5E-12 91.5 4.7 59 83-154 25-83 (346)
97 PRK05201 hslU ATP-dependent pr 98.4 1.9E-07 4.2E-12 96.1 5.1 72 95-166 16-88 (443)
98 CHL00181 cbbX CbbX; Provisiona 98.4 3.5E-07 7.5E-12 91.4 5.3 83 420-510 66-158 (287)
99 TIGR02880 cbbX_cfxQ probable R 98.4 5.3E-07 1.2E-11 90.1 6.2 87 416-510 60-157 (284)
100 PRK14962 DNA polymerase III su 98.4 4.3E-07 9.3E-12 96.7 5.7 56 87-154 7-62 (472)
101 TIGR02902 spore_lonB ATP-depen 98.4 4.6E-07 9.9E-12 98.3 6.0 96 55-163 26-131 (531)
102 PF05673 DUF815: Protein of un 98.4 2.9E-07 6.3E-12 88.2 3.8 72 86-166 19-93 (249)
103 PLN03025 replication factor C 98.3 5.6E-07 1.2E-11 91.6 5.7 68 85-165 4-76 (319)
104 PRK13342 recombination factor 98.3 8.3E-07 1.8E-11 93.6 5.1 65 87-164 5-72 (413)
105 PHA02544 44 clamp loader, smal 98.2 1.4E-06 2.9E-11 88.6 5.9 69 83-163 10-78 (316)
106 COG1219 ClpX ATP-dependent pro 98.2 4.3E-07 9.3E-12 88.9 1.9 88 95-185 62-179 (408)
107 PRK12402 replication factor C 98.2 1.4E-06 3.1E-11 89.1 5.6 69 84-165 5-78 (337)
108 PRK14960 DNA polymerase III su 98.2 1.2E-06 2.7E-11 94.8 5.3 57 86-154 7-63 (702)
109 TIGR02639 ClpA ATP-dependent C 98.2 1.9E-06 4.2E-11 97.1 6.7 69 418-486 208-291 (731)
110 smart00763 AAA_PrkA PrkA AAA d 98.2 2.6E-06 5.6E-11 86.5 6.9 61 95-163 52-120 (361)
111 PRK14961 DNA polymerase III su 98.2 1.4E-06 3.1E-11 90.2 4.7 57 86-154 8-64 (363)
112 KOG0991|consensus 98.2 1.1E-06 2.4E-11 82.5 3.4 70 84-166 17-91 (333)
113 PRK14958 DNA polymerase III su 98.2 1.8E-06 3.8E-11 93.0 5.3 59 85-155 7-65 (509)
114 PRK07940 DNA polymerase III su 98.2 1.7E-06 3.8E-11 90.0 5.1 61 92-155 3-63 (394)
115 KOG2028|consensus 98.2 1.4E-06 3E-11 86.7 3.8 82 87-181 131-235 (554)
116 PRK14956 DNA polymerase III su 98.2 1.7E-06 3.7E-11 91.1 4.8 57 86-154 10-66 (484)
117 PRK10865 protein disaggregatio 98.1 3E-06 6.5E-11 96.8 6.2 84 89-185 173-288 (857)
118 PRK08903 DnaA regulatory inact 98.1 4.1E-06 8.8E-11 80.9 6.2 68 87-166 11-83 (227)
119 PF06068 TIP49: TIP49 C-termin 98.1 3.6E-06 7.8E-11 84.9 5.7 66 93-166 23-90 (398)
120 PRK14964 DNA polymerase III su 98.1 2.9E-06 6.3E-11 90.2 5.0 55 87-153 6-60 (491)
121 COG1220 HslU ATP-dependent pro 98.1 3.8E-06 8.2E-11 82.9 5.0 71 95-165 16-87 (444)
122 PRK14955 DNA polymerase III su 98.1 3.5E-06 7.5E-11 88.4 5.0 58 86-155 8-65 (397)
123 PRK14963 DNA polymerase III su 98.1 3E-06 6.5E-11 91.0 4.6 57 86-154 6-62 (504)
124 PRK14949 DNA polymerase III su 98.1 2.9E-06 6.2E-11 94.7 4.4 58 86-155 8-65 (944)
125 PF01078 Mg_chelatase: Magnesi 98.0 4.8E-06 1E-10 78.2 4.8 47 92-153 1-47 (206)
126 PRK06645 DNA polymerase III su 98.0 4.6E-06 1E-10 89.3 5.0 58 85-154 12-69 (507)
127 TIGR03420 DnaA_homol_Hda DnaA 98.0 9.9E-06 2.2E-10 77.9 6.9 65 89-166 10-79 (226)
128 PHA02244 ATPase-like protein 98.0 7.4E-06 1.6E-10 83.4 6.0 35 127-161 118-152 (383)
129 PRK12323 DNA polymerase III su 98.0 5.2E-06 1.1E-10 89.9 5.1 57 86-154 8-64 (700)
130 PRK00440 rfc replication facto 98.0 7.5E-06 1.6E-10 83.1 6.1 68 83-163 6-78 (319)
131 COG1224 TIP49 DNA helicase TIP 98.0 6.3E-06 1.4E-10 82.0 5.2 69 90-166 35-105 (450)
132 PRK05342 clpX ATP-dependent pr 98.0 1E-05 2.2E-10 84.8 7.0 94 417-510 111-214 (412)
133 CHL00095 clpC Clp protease ATP 98.0 8.3E-06 1.8E-10 93.2 6.9 69 418-486 205-288 (821)
134 PRK13341 recombination factor 98.0 5.5E-06 1.2E-10 92.4 5.1 64 87-163 21-87 (725)
135 PRK08691 DNA polymerase III su 98.0 4.9E-06 1.1E-10 91.0 4.4 58 85-154 7-64 (709)
136 PRK07003 DNA polymerase III su 98.0 6.2E-06 1.3E-10 90.5 5.0 58 85-154 7-64 (830)
137 cd00009 AAA The AAA+ (ATPases 98.0 1.3E-05 2.7E-10 70.5 6.1 56 98-166 2-60 (151)
138 PF07728 AAA_5: AAA domain (dy 98.0 4.9E-06 1.1E-10 73.8 3.4 37 130-166 1-37 (139)
139 TIGR01650 PD_CobS cobaltochela 98.0 4.9E-06 1.1E-10 83.6 3.6 41 126-166 62-102 (327)
140 TIGR02397 dnaX_nterm DNA polym 98.0 7.2E-06 1.6E-10 84.6 4.9 57 86-154 6-62 (355)
141 TIGR02640 gas_vesic_GvpN gas v 98.0 9.8E-06 2.1E-10 80.1 5.5 36 128-163 21-56 (262)
142 PRK06893 DNA replication initi 98.0 6.1E-06 1.3E-10 79.9 3.9 88 85-183 7-106 (229)
143 PRK14969 DNA polymerase III su 98.0 6.1E-06 1.3E-10 89.3 4.3 57 86-154 8-64 (527)
144 PRK07994 DNA polymerase III su 98.0 8.5E-06 1.8E-10 89.3 5.5 57 86-154 8-64 (647)
145 TIGR00382 clpX endopeptidase C 98.0 1.3E-05 2.7E-10 83.7 6.4 91 420-510 123-222 (413)
146 PRK14952 DNA polymerase III su 97.9 7E-06 1.5E-10 89.3 4.5 57 86-154 5-61 (584)
147 PRK11034 clpA ATP-dependent Cl 97.9 1.3E-05 2.9E-10 89.8 6.6 68 419-486 213-295 (758)
148 PRK07133 DNA polymerase III su 97.9 7.9E-06 1.7E-10 90.1 4.7 57 86-154 10-66 (725)
149 TIGR03345 VI_ClpV1 type VI sec 97.9 1.2E-05 2.5E-10 91.8 6.2 85 89-186 182-298 (852)
150 PRK14957 DNA polymerase III su 97.9 8.6E-06 1.9E-10 87.9 4.4 57 86-154 8-64 (546)
151 PRK05896 DNA polymerase III su 97.9 1E-05 2.2E-10 87.6 4.7 57 86-154 8-64 (605)
152 PRK14970 DNA polymerase III su 97.9 1.1E-05 2.3E-10 83.8 4.8 58 85-154 8-65 (367)
153 PRK06305 DNA polymerase III su 97.9 1.1E-05 2.4E-10 85.7 4.7 57 86-154 9-65 (451)
154 PRK14954 DNA polymerase III su 97.9 1.1E-05 2.4E-10 88.4 4.8 57 86-154 8-64 (620)
155 PRK14965 DNA polymerase III su 97.9 1.2E-05 2.6E-10 88.1 4.7 57 86-154 8-64 (576)
156 PRK05563 DNA polymerase III su 97.9 1.3E-05 2.9E-10 87.3 5.0 56 87-154 9-64 (559)
157 PRK14959 DNA polymerase III su 97.9 1.6E-05 3.5E-10 86.5 5.4 58 86-155 8-65 (624)
158 TIGR03346 chaperone_ClpB ATP-d 97.9 1.7E-05 3.8E-10 90.8 5.9 84 89-185 168-283 (852)
159 PRK08084 DNA replication initi 97.8 1.8E-05 4E-10 76.8 5.0 64 87-163 15-83 (235)
160 PRK06647 DNA polymerase III su 97.8 1.5E-05 3.2E-10 86.8 4.8 56 87-154 9-64 (563)
161 PRK14951 DNA polymerase III su 97.8 1.5E-05 3.2E-10 87.2 4.6 58 85-154 7-64 (618)
162 PRK09111 DNA polymerase III su 97.8 1.9E-05 4.2E-10 86.3 5.2 59 85-155 15-73 (598)
163 PRK10865 protein disaggregatio 97.8 2E-05 4.3E-10 90.2 5.5 69 418-486 204-288 (857)
164 PRK14950 DNA polymerase III su 97.8 1.7E-05 3.8E-10 87.1 4.8 57 86-154 8-64 (585)
165 PRK07764 DNA polymerase III su 97.8 1.9E-05 4E-10 89.3 4.6 57 86-154 7-63 (824)
166 PF03215 Rad17: Rad17 cell cyc 97.8 2.9E-05 6.3E-10 83.5 5.7 70 82-159 7-76 (519)
167 PF07726 AAA_3: ATPase family 97.8 1.5E-05 3.3E-10 68.9 2.9 37 130-166 1-38 (131)
168 COG2607 Predicted ATPase (AAA+ 97.8 2.3E-05 4.9E-10 74.3 4.2 72 86-166 52-126 (287)
169 COG0606 Predicted ATPase with 97.8 3.7E-05 8.1E-10 79.8 5.9 48 90-152 175-222 (490)
170 PRK13407 bchI magnesium chelat 97.7 3.1E-05 6.7E-10 78.8 5.1 52 89-153 3-54 (334)
171 PF00158 Sigma54_activat: Sigm 97.7 6.3E-05 1.4E-09 69.1 6.6 69 97-176 2-73 (168)
172 PRK14953 DNA polymerase III su 97.7 2.7E-05 5.9E-10 83.4 4.7 57 86-154 8-64 (486)
173 smart00382 AAA ATPases associa 97.7 2.2E-05 4.9E-10 68.2 3.2 39 128-166 2-43 (148)
174 PF13207 AAA_17: AAA domain; P 97.7 2.1E-05 4.6E-10 67.7 3.0 30 131-160 2-31 (121)
175 TIGR03345 VI_ClpV1 type VI sec 97.7 5.6E-05 1.2E-09 86.4 6.9 70 418-487 213-298 (852)
176 PRK15455 PrkA family serine pr 97.7 4.5E-05 9.9E-10 81.5 5.7 65 91-163 73-139 (644)
177 TIGR00362 DnaA chromosomal rep 97.7 4.6E-05 1E-09 80.2 5.7 39 128-166 136-179 (405)
178 PRK00149 dnaA chromosomal repl 97.7 3.7E-05 8.1E-10 82.0 5.0 69 87-166 115-191 (450)
179 PRK08451 DNA polymerase III su 97.7 3.6E-05 7.8E-10 82.8 4.8 56 86-153 6-61 (535)
180 TIGR02928 orc1/cdc6 family rep 97.7 6.8E-05 1.5E-09 77.7 6.7 64 94-166 15-87 (365)
181 PF07724 AAA_2: AAA domain (Cd 97.7 3.3E-05 7.1E-10 71.2 3.8 38 129-166 4-45 (171)
182 KOG1969|consensus 97.7 1.9E-05 4.1E-10 85.1 2.5 85 82-166 259-364 (877)
183 PRK14948 DNA polymerase III su 97.7 4.1E-05 8.8E-10 84.4 5.1 57 86-154 8-64 (620)
184 KOG0745|consensus 97.6 4.7E-05 1E-09 77.6 4.5 57 129-185 227-308 (564)
185 PRK00131 aroK shikimate kinase 97.6 3.5E-05 7.7E-10 70.7 3.3 33 126-158 2-34 (175)
186 TIGR00602 rad24 checkpoint pro 97.6 4.7E-05 1E-09 83.5 4.2 68 83-158 73-140 (637)
187 PRK08727 hypothetical protein; 97.6 0.00014 3E-09 70.6 6.6 56 129-184 42-109 (233)
188 PRK06620 hypothetical protein; 97.6 9.8E-05 2.1E-09 70.7 5.2 61 86-156 8-72 (214)
189 TIGR00763 lon ATP-dependent pr 97.6 0.00011 2.3E-09 83.6 6.4 65 419-484 353-429 (775)
190 KOG1942|consensus 97.6 7.1E-05 1.5E-09 72.7 4.1 68 91-166 35-104 (456)
191 COG0714 MoxR-like ATPases [Gen 97.5 0.00011 2.4E-09 75.1 5.8 38 127-164 42-79 (329)
192 PRK08939 primosomal protein Dn 97.5 0.00011 2.3E-09 74.3 5.3 40 127-166 155-197 (306)
193 PRK08116 hypothetical protein; 97.5 0.00017 3.7E-09 71.5 6.7 39 128-166 114-155 (268)
194 TIGR03346 chaperone_ClpB ATP-d 97.5 7.6E-05 1.6E-09 85.7 4.8 69 418-486 199-283 (852)
195 CHL00081 chlI Mg-protoporyphyr 97.5 9E-05 2E-09 75.7 4.7 54 87-153 10-63 (350)
196 PRK05642 DNA replication initi 97.5 0.00012 2.6E-09 71.1 5.4 39 128-166 45-86 (234)
197 PF01695 IstB_IS21: IstB-like 97.5 7.8E-05 1.7E-09 69.2 3.7 40 127-166 46-88 (178)
198 COG1484 DnaC DNA replication p 97.5 0.00016 3.5E-09 71.0 6.0 40 127-166 104-146 (254)
199 PRK12377 putative replication 97.5 0.00022 4.7E-09 69.7 6.6 39 128-166 101-142 (248)
200 PRK08118 topology modulation p 97.5 7.5E-05 1.6E-09 68.6 3.0 32 129-160 2-33 (167)
201 PRK07952 DNA replication prote 97.5 0.00024 5.1E-09 69.3 6.5 38 129-166 100-140 (244)
202 PRK00411 cdc6 cell division co 97.5 0.00025 5.4E-09 74.3 7.1 67 91-166 27-98 (394)
203 PF06309 Torsin: Torsin; Inte 97.4 0.00019 4.1E-09 62.0 4.9 50 95-152 26-77 (127)
204 PRK06835 DNA replication prote 97.4 0.00016 3.4E-09 73.6 4.9 39 128-166 183-224 (329)
205 PRK13947 shikimate kinase; Pro 97.4 0.00011 2.5E-09 67.4 3.0 31 130-160 3-33 (171)
206 PRK07471 DNA polymerase III su 97.4 0.00029 6.2E-09 72.9 6.2 55 88-154 13-67 (365)
207 TIGR00764 lon_rel lon-related 97.4 0.00017 3.6E-09 79.5 4.8 55 86-155 10-64 (608)
208 PRK14971 DNA polymerase III su 97.4 0.00016 3.5E-09 79.6 4.7 56 86-153 9-64 (614)
209 COG0542 clpA ATP-binding subun 97.4 0.00026 5.6E-09 78.5 6.2 65 94-166 491-562 (786)
210 PRK03839 putative kinase; Prov 97.4 0.00011 2.4E-09 68.1 2.9 30 131-160 3-32 (180)
211 PRK08181 transposase; Validate 97.4 0.00013 2.9E-09 72.1 3.4 40 127-166 105-147 (269)
212 PRK13531 regulatory ATPase Rav 97.4 0.00028 6.2E-09 74.5 6.1 28 127-154 38-65 (498)
213 PRK00625 shikimate kinase; Pro 97.3 0.00013 2.8E-09 67.4 2.9 31 130-160 2-32 (173)
214 PRK12422 chromosomal replicati 97.3 0.00013 2.9E-09 77.4 3.4 39 128-166 141-182 (445)
215 cd00464 SK Shikimate kinase (S 97.3 0.00015 3.2E-09 65.2 3.2 31 130-160 1-31 (154)
216 PRK14088 dnaA chromosomal repl 97.3 0.00047 1E-08 73.3 7.2 39 128-166 130-173 (440)
217 PRK06921 hypothetical protein; 97.3 0.00026 5.7E-09 70.0 5.0 39 128-166 117-159 (266)
218 PRK05564 DNA polymerase III su 97.3 0.00028 6E-09 71.7 5.3 51 92-154 2-52 (313)
219 PRK13765 ATP-dependent proteas 97.3 0.00023 5E-09 78.4 5.0 55 85-154 22-76 (637)
220 PF00308 Bac_DnaA: Bacterial d 97.3 0.00043 9.2E-09 66.5 6.2 38 129-166 35-77 (219)
221 KOG3347|consensus 97.3 0.00015 3.3E-09 63.7 2.7 32 129-160 8-39 (176)
222 PRK11331 5-methylcytosine-spec 97.3 0.00032 7E-09 73.4 5.3 47 93-154 174-220 (459)
223 PF13671 AAA_33: AAA domain; P 97.3 0.00022 4.7E-09 63.2 3.5 34 131-166 2-35 (143)
224 PRK13949 shikimate kinase; Pro 97.2 0.00017 3.7E-09 66.4 2.6 32 129-160 2-33 (169)
225 COG0703 AroK Shikimate kinase 97.2 0.00019 4.2E-09 65.4 2.8 32 129-160 3-34 (172)
226 COG2256 MGS1 ATPase related to 97.2 0.00042 9E-09 70.5 5.3 61 416-481 51-116 (436)
227 PRK14531 adenylate kinase; Pro 97.2 0.00022 4.8E-09 66.4 3.1 36 129-166 3-38 (183)
228 COG0470 HolB ATPase involved i 97.2 0.00049 1.1E-08 69.8 5.8 61 95-166 2-86 (325)
229 PRK14086 dnaA chromosomal repl 97.2 0.00027 5.8E-09 76.8 4.0 38 129-166 315-357 (617)
230 PRK09112 DNA polymerase III su 97.2 0.00058 1.2E-08 70.3 6.1 55 88-154 17-71 (351)
231 PRK14532 adenylate kinase; Pro 97.2 0.00023 4.9E-09 66.6 2.8 36 130-167 2-37 (188)
232 COG2812 DnaX DNA polymerase II 97.2 0.00027 5.9E-09 75.3 3.5 57 87-155 9-65 (515)
233 PF00910 RNA_helicase: RNA hel 97.2 0.00028 6.1E-09 59.7 2.8 26 131-156 1-26 (107)
234 PF13191 AAA_16: AAA ATPase do 97.2 0.00058 1.3E-08 63.1 5.2 59 96-164 2-63 (185)
235 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00026 5.6E-09 65.7 2.8 36 131-168 2-37 (183)
236 TIGR01817 nifA Nif-specific re 97.1 0.00074 1.6E-08 73.8 6.7 75 89-174 191-268 (534)
237 cd00227 CPT Chloramphenicol (C 97.1 0.00029 6.3E-09 65.1 3.0 37 129-165 3-39 (175)
238 smart00382 AAA ATPases associa 97.1 0.00077 1.7E-08 58.3 5.5 67 419-485 8-94 (148)
239 PHA00729 NTP-binding motif con 97.1 0.00012 2.5E-09 70.0 0.2 28 129-156 18-45 (226)
240 PRK06526 transposase; Provisio 97.1 0.00028 6.1E-09 69.3 2.8 39 127-165 97-138 (254)
241 cd02020 CMPK Cytidine monophos 97.1 0.00031 6.6E-09 62.5 2.8 30 131-160 2-31 (147)
242 PRK15424 propionate catabolism 97.1 0.00071 1.5E-08 73.3 6.1 75 91-176 216-301 (538)
243 PTZ00112 origin recognition co 97.1 0.0015 3.2E-08 72.9 8.5 73 94-175 755-839 (1164)
244 COG1474 CDC6 Cdc6-related prot 97.1 0.0015 3.2E-08 67.6 7.9 62 96-166 19-85 (366)
245 PTZ00088 adenylate kinase 1; P 97.1 0.00038 8.2E-09 67.3 3.3 37 128-166 6-42 (229)
246 COG1102 Cmk Cytidylate kinase 97.1 0.00035 7.7E-09 62.4 2.8 28 131-158 3-30 (179)
247 PRK13948 shikimate kinase; Pro 97.1 0.00038 8.2E-09 64.8 3.2 34 127-160 9-42 (182)
248 KOG0745|consensus 97.1 0.0011 2.3E-08 68.0 6.2 67 419-485 232-307 (564)
249 PRK09183 transposase/IS protei 97.0 0.00048 1.1E-08 67.9 3.8 40 126-165 100-142 (259)
250 PRK06762 hypothetical protein; 97.0 0.00042 9.2E-09 63.3 3.2 37 129-165 3-39 (166)
251 PRK06217 hypothetical protein; 97.0 0.0004 8.6E-09 64.7 2.9 30 130-159 3-32 (183)
252 cd01428 ADK Adenylate kinase ( 97.0 0.00038 8.2E-09 65.2 2.8 34 131-166 2-35 (194)
253 cd02021 GntK Gluconate kinase 97.0 0.00039 8.4E-09 62.4 2.7 32 131-164 2-33 (150)
254 PRK07261 topology modulation p 97.0 0.00042 9.2E-09 63.9 2.9 31 130-160 2-32 (171)
255 PHA02624 large T antigen; Prov 97.0 0.00052 1.1E-08 73.9 3.8 43 124-166 427-469 (647)
256 PRK08154 anaerobic benzoate ca 97.0 0.00066 1.4E-08 68.8 4.4 55 99-158 109-163 (309)
257 TIGR01313 therm_gnt_kin carboh 97.0 0.00045 9.7E-09 62.9 2.8 32 131-164 1-32 (163)
258 PRK13946 shikimate kinase; Pro 97.0 0.00043 9.3E-09 64.6 2.7 33 128-160 10-42 (184)
259 PRK07399 DNA polymerase III su 97.0 0.00087 1.9E-08 67.9 5.0 52 92-155 2-53 (314)
260 PRK03731 aroL shikimate kinase 97.0 0.00054 1.2E-08 62.9 3.2 31 129-159 3-33 (171)
261 TIGR02030 BchI-ChlI magnesium 97.0 0.00097 2.1E-08 68.1 5.2 49 92-153 2-50 (337)
262 PRK14530 adenylate kinase; Pro 96.9 0.00057 1.2E-08 65.4 3.1 30 130-159 5-34 (215)
263 TIGR02442 Cob-chelat-sub cobal 96.9 0.00095 2.1E-08 74.2 5.3 48 92-152 2-49 (633)
264 PRK06547 hypothetical protein; 96.9 0.00057 1.2E-08 63.0 2.9 34 126-159 13-46 (172)
265 PF13401 AAA_22: AAA domain; P 96.9 0.00062 1.4E-08 59.2 3.0 39 128-166 4-50 (131)
266 PRK11608 pspF phage shock prot 96.9 0.0016 3.5E-08 66.4 6.4 72 93-175 5-79 (326)
267 PRK14528 adenylate kinase; Pro 96.9 0.00058 1.3E-08 63.9 2.9 35 129-165 2-36 (186)
268 PRK05057 aroK shikimate kinase 96.9 0.00071 1.5E-08 62.4 3.2 34 128-161 4-37 (172)
269 TIGR00390 hslU ATP-dependent p 96.9 0.00068 1.5E-08 70.3 3.2 82 415-506 48-135 (441)
270 PRK02496 adk adenylate kinase; 96.9 0.00072 1.6E-08 62.9 3.0 34 130-165 3-36 (184)
271 COG1936 Predicted nucleotide k 96.8 0.00053 1.1E-08 62.1 1.9 34 130-166 2-35 (180)
272 TIGR02329 propionate_PrpR prop 96.8 0.0016 3.4E-08 70.5 5.8 75 91-176 209-286 (526)
273 PF13245 AAA_19: Part of AAA d 96.8 0.0022 4.7E-08 50.7 5.1 43 131-173 13-62 (76)
274 PRK04040 adenylate kinase; Pro 96.8 0.0011 2.3E-08 62.2 3.8 37 128-164 2-38 (188)
275 TIGR02974 phageshock_pspF psp 96.8 0.0025 5.4E-08 65.1 6.8 49 127-175 21-72 (329)
276 PRK14527 adenylate kinase; Pro 96.8 0.00087 1.9E-08 62.9 3.0 38 127-166 5-42 (191)
277 PRK05022 anaerobic nitric oxid 96.8 0.0023 5.1E-08 69.4 6.6 72 92-174 185-259 (509)
278 PLN02200 adenylate kinase fami 96.8 0.00097 2.1E-08 64.7 3.2 40 127-168 42-81 (234)
279 PRK15429 formate hydrogenlyase 96.8 0.0021 4.4E-08 72.5 6.2 67 90-167 372-441 (686)
280 TIGR01351 adk adenylate kinase 96.8 0.00091 2E-08 63.7 2.9 34 131-166 2-35 (210)
281 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0011 2.3E-08 61.7 3.2 34 130-165 5-38 (188)
282 PRK11388 DNA-binding transcrip 96.7 0.0025 5.4E-08 71.2 6.6 66 90-166 321-389 (638)
283 PRK00279 adk adenylate kinase; 96.7 0.001 2.2E-08 63.7 3.0 34 131-166 3-36 (215)
284 PRK08058 DNA polymerase III su 96.7 0.0014 3E-08 67.0 4.2 51 92-154 3-54 (329)
285 PF12774 AAA_6: Hydrolytic ATP 96.7 0.0013 2.7E-08 63.7 3.4 40 127-166 31-70 (231)
286 PRK09087 hypothetical protein; 96.7 0.002 4.4E-08 62.1 4.8 50 129-180 45-99 (226)
287 COG1219 ClpX ATP-dependent pro 96.7 0.0031 6.8E-08 62.4 5.9 86 420-510 104-203 (408)
288 COG1221 PspF Transcriptional r 96.7 0.0024 5.2E-08 66.1 5.3 67 89-166 73-143 (403)
289 PLN02674 adenylate kinase 96.6 0.0014 3E-08 63.7 3.1 38 127-166 30-67 (244)
290 COG1855 ATPase (PilT family) [ 96.6 0.0023 5E-08 65.9 4.6 48 90-155 243-290 (604)
291 PF13173 AAA_14: AAA domain 96.6 0.002 4.3E-08 56.3 3.6 38 129-166 3-42 (128)
292 cd01120 RecA-like_NTPases RecA 96.6 0.002 4.4E-08 57.8 3.7 36 131-166 2-40 (165)
293 PRK10820 DNA-binding transcrip 96.6 0.0038 8.2E-08 67.9 6.4 77 88-175 198-277 (520)
294 PF00406 ADK: Adenylate kinase 96.6 0.0013 2.7E-08 59.2 2.2 33 133-167 1-33 (151)
295 PF13238 AAA_18: AAA domain; P 96.6 0.0016 3.4E-08 56.3 2.7 22 131-152 1-22 (129)
296 COG0563 Adk Adenylate kinase a 96.6 0.0018 3.9E-08 60.0 3.3 35 130-166 2-36 (178)
297 KOG1970|consensus 96.5 0.0016 3.4E-08 68.7 3.0 71 83-160 71-142 (634)
298 PRK04182 cytidylate kinase; Pr 96.5 0.0016 3.6E-08 59.9 2.9 28 131-158 3-30 (180)
299 PRK05541 adenylylsulfate kinas 96.5 0.0026 5.6E-08 58.7 4.2 37 127-163 6-45 (176)
300 PF13086 AAA_11: AAA domain; P 96.5 0.0026 5.6E-08 60.8 4.1 22 131-152 20-41 (236)
301 PHA02530 pseT polynucleotide k 96.5 0.0022 4.7E-08 64.6 3.7 36 129-165 3-38 (300)
302 TIGR01618 phage_P_loop phage n 96.5 0.0012 2.6E-08 63.2 1.6 22 128-149 12-33 (220)
303 PRK14087 dnaA chromosomal repl 96.5 0.0028 6.1E-08 67.5 4.6 39 128-166 141-184 (450)
304 PRK14526 adenylate kinase; Pro 96.5 0.0019 4.2E-08 61.6 3.0 34 131-166 3-36 (211)
305 PF07724 AAA_2: AAA domain (Cd 96.5 0.0024 5.2E-08 58.8 3.4 83 420-509 10-105 (171)
306 cd02027 APSK Adenosine 5'-phos 96.5 0.0026 5.7E-08 57.2 3.6 35 131-165 2-39 (149)
307 PRK06696 uridine kinase; Valid 96.4 0.0046 1E-07 59.5 5.5 38 128-165 22-62 (223)
308 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0024 5.1E-08 56.1 3.0 30 126-155 20-49 (133)
309 TIGR00678 holB DNA polymerase 96.4 0.0021 4.6E-08 60.0 2.9 28 127-154 13-40 (188)
310 PRK01184 hypothetical protein; 96.4 0.0021 4.5E-08 59.8 2.7 34 130-166 3-36 (184)
311 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0022 4.9E-08 58.5 2.8 28 131-158 3-30 (171)
312 PF05496 RuvB_N: Holliday junc 96.4 0.0029 6.2E-08 60.3 3.5 58 417-481 54-113 (233)
313 cd02019 NK Nucleoside/nucleoti 96.4 0.0029 6.2E-08 48.9 2.9 22 131-152 2-23 (69)
314 PF13521 AAA_28: AAA domain; P 96.3 0.0025 5.4E-08 58.0 2.9 26 131-157 2-27 (163)
315 COG0542 clpA ATP-binding subun 96.3 0.0058 1.2E-07 68.1 6.1 70 417-486 195-279 (786)
316 KOG0990|consensus 96.3 0.0025 5.4E-08 63.1 2.8 61 82-155 29-89 (360)
317 PRK14529 adenylate kinase; Pro 96.3 0.0026 5.7E-08 61.0 2.8 28 131-158 3-30 (223)
318 PF01745 IPT: Isopentenyl tran 96.3 0.0036 7.9E-08 58.8 3.5 36 131-166 4-39 (233)
319 KOG0738|consensus 96.3 0.0033 7.2E-08 63.7 3.4 137 375-513 202-346 (491)
320 TIGR00368 Mg chelatase-related 96.2 0.0033 7.2E-08 67.6 3.6 48 90-152 188-235 (499)
321 cd01124 KaiC KaiC is a circadi 96.2 0.0041 9E-08 57.6 3.8 35 131-165 2-39 (187)
322 PF13177 DNA_pol3_delta2: DNA 96.2 0.0066 1.4E-07 55.4 5.0 45 98-154 1-45 (162)
323 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0037 8.1E-08 61.2 3.5 33 131-163 2-37 (249)
324 PLN02199 shikimate kinase 96.2 0.0032 6.9E-08 62.5 3.0 34 127-160 101-134 (303)
325 TIGR02237 recomb_radB DNA repa 96.2 0.0045 9.8E-08 58.7 4.0 40 124-163 8-50 (209)
326 PF14532 Sigma54_activ_2: Sigm 96.2 0.0021 4.6E-08 56.9 1.5 39 127-165 20-61 (138)
327 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.005 1.1E-07 59.9 4.0 41 124-164 17-60 (237)
328 PLN02459 probable adenylate ki 96.1 0.0042 9.2E-08 60.8 3.4 35 130-166 31-65 (261)
329 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.0085 1.8E-07 60.8 5.6 63 94-164 61-125 (358)
330 KOG1051|consensus 96.1 0.0046 9.9E-08 69.8 4.0 64 94-165 562-631 (898)
331 TIGR01650 PD_CobS cobaltochela 96.1 0.0053 1.1E-07 62.0 4.0 65 416-481 66-146 (327)
332 PHA02774 E1; Provisional 96.1 0.0049 1.1E-07 66.3 4.0 38 124-161 430-468 (613)
333 PF06414 Zeta_toxin: Zeta toxi 96.1 0.005 1.1E-07 58.2 3.6 41 126-166 13-54 (199)
334 PF06745 KaiC: KaiC; InterPro 96.1 0.005 1.1E-07 59.3 3.7 42 124-165 15-60 (226)
335 COG3829 RocR Transcriptional r 96.1 0.013 2.7E-07 62.3 6.6 86 88-184 239-328 (560)
336 PRK10787 DNA-binding ATP-depen 96.1 0.0088 1.9E-07 67.9 5.9 66 419-485 355-432 (784)
337 TIGR00376 DNA helicase, putati 96.0 0.016 3.4E-07 64.6 7.7 43 129-171 174-219 (637)
338 COG4088 Predicted nucleotide k 96.0 0.0041 8.9E-08 57.9 2.4 28 131-158 4-31 (261)
339 PRK00889 adenylylsulfate kinas 96.0 0.006 1.3E-07 56.2 3.6 37 128-164 4-43 (175)
340 TIGR03015 pepcterm_ATPase puta 96.0 0.0041 8.9E-08 61.4 2.7 24 130-153 45-68 (269)
341 PRK12339 2-phosphoglycerate ki 96.0 0.005 1.1E-07 58.1 3.1 39 129-169 4-42 (197)
342 cd01394 radB RadB. The archaea 96.0 0.0066 1.4E-07 58.0 3.9 40 124-163 15-57 (218)
343 KOG0731|consensus 96.0 0.0046 9.9E-08 68.4 3.1 126 389-514 319-449 (774)
344 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.0065 1.4E-07 59.9 3.6 39 124-162 32-73 (259)
345 PRK08233 hypothetical protein; 95.9 0.0061 1.3E-07 56.2 3.2 23 131-153 6-28 (182)
346 PRK00771 signal recognition pa 95.9 0.011 2.4E-07 62.5 5.5 41 126-166 93-136 (437)
347 PRK10078 ribose 1,5-bisphospho 95.9 0.0045 9.8E-08 57.7 2.4 27 130-156 4-30 (186)
348 PRK13808 adenylate kinase; Pro 95.9 0.0053 1.1E-07 62.3 2.9 33 131-165 3-35 (333)
349 KOG0743|consensus 95.9 0.0078 1.7E-07 62.4 4.1 106 400-513 217-334 (457)
350 KOG3354|consensus 95.9 0.0055 1.2E-07 54.4 2.5 31 127-157 10-41 (191)
351 PRK06067 flagellar accessory p 95.9 0.0084 1.8E-07 58.1 4.2 41 124-164 21-64 (234)
352 KOG3907|consensus 95.9 0.0022 4.7E-08 60.5 -0.0 161 243-450 19-202 (303)
353 PRK11545 gntK gluconate kinase 95.9 0.0053 1.1E-07 56.1 2.5 22 134-155 1-22 (163)
354 COG0467 RAD55 RecA-superfamily 95.8 0.0087 1.9E-07 59.0 4.1 43 124-166 19-64 (260)
355 PRK05973 replicative DNA helic 95.8 0.0089 1.9E-07 57.9 4.0 41 124-164 60-103 (237)
356 PRK09361 radB DNA repair and r 95.8 0.0089 1.9E-07 57.5 4.0 39 124-162 19-60 (225)
357 TIGR00235 udk uridine kinase. 95.8 0.0091 2E-07 56.7 4.0 28 127-154 3-32 (207)
358 PF01583 APS_kinase: Adenylyls 95.8 0.0088 1.9E-07 54.0 3.6 36 131-166 5-43 (156)
359 PRK12338 hypothetical protein; 95.8 0.0066 1.4E-07 61.2 2.9 39 128-168 4-42 (319)
360 PRK08533 flagellar accessory p 95.8 0.01 2.3E-07 57.4 4.2 40 124-163 20-62 (230)
361 PF07931 CPT: Chloramphenicol 95.7 0.0082 1.8E-07 55.3 3.3 37 130-166 3-39 (174)
362 PRK04220 2-phosphoglycerate ki 95.7 0.016 3.5E-07 57.9 5.3 37 127-164 91-127 (301)
363 cd02022 DPCK Dephospho-coenzym 95.7 0.0078 1.7E-07 55.8 2.8 32 131-165 2-33 (179)
364 PF01637 Arch_ATPase: Archaeal 95.7 0.011 2.4E-07 56.4 3.9 27 127-153 19-45 (234)
365 TIGR00064 ftsY signal recognit 95.7 0.019 4.2E-07 57.0 5.7 38 126-163 70-110 (272)
366 PTZ00202 tuzin; Provisional 95.6 0.021 4.5E-07 59.6 6.0 61 93-163 261-321 (550)
367 PRK13342 recombination factor 95.6 0.018 3.9E-07 60.8 5.9 59 419-482 42-105 (413)
368 PRK13975 thymidylate kinase; P 95.6 0.011 2.3E-07 55.5 3.7 27 130-156 4-30 (196)
369 cd00820 PEPCK_HprK Phosphoenol 95.6 0.01 2.2E-07 50.0 3.2 38 125-166 12-49 (107)
370 PLN03210 Resistant to P. syrin 95.6 0.014 3.1E-07 69.6 5.5 57 89-156 179-235 (1153)
371 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.012 2.6E-07 56.7 4.0 40 124-163 16-58 (229)
372 cd01129 PulE-GspE PulE/GspE Th 95.6 0.019 4.2E-07 56.7 5.5 50 90-154 56-106 (264)
373 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.012 2.5E-07 56.9 3.9 40 124-163 15-63 (235)
374 PRK09825 idnK D-gluconate kina 95.6 0.0087 1.9E-07 55.4 2.8 25 130-154 5-29 (176)
375 PRK00080 ruvB Holliday junctio 95.6 0.014 3.1E-07 59.6 4.7 58 419-482 57-115 (328)
376 COG2204 AtoC Response regulato 95.6 0.028 6E-07 59.4 6.8 73 91-174 138-213 (464)
377 TIGR02322 phosphon_PhnN phosph 95.5 0.0086 1.9E-07 55.3 2.7 25 130-154 3-27 (179)
378 PF03266 NTPase_1: NTPase; In 95.5 0.0097 2.1E-07 54.6 2.9 22 131-152 2-23 (168)
379 PF05729 NACHT: NACHT domain 95.5 0.009 2E-07 53.8 2.7 24 130-153 2-25 (166)
380 cd02028 UMPK_like Uridine mono 95.5 0.013 2.8E-07 54.5 3.6 33 131-163 2-37 (179)
381 PRK06761 hypothetical protein; 95.5 0.012 2.6E-07 58.5 3.6 32 130-161 5-36 (282)
382 cd02024 NRK1 Nicotinamide ribo 95.5 0.0093 2E-07 55.7 2.7 22 131-152 2-23 (187)
383 PRK05800 cobU adenosylcobinami 95.5 0.01 2.2E-07 54.6 2.9 34 130-163 3-36 (170)
384 TIGR02012 tigrfam_recA protein 95.5 0.013 2.8E-07 59.3 3.8 43 124-166 51-96 (321)
385 PRK04328 hypothetical protein; 95.4 0.014 3.1E-07 57.1 4.0 41 124-164 19-62 (249)
386 TIGR02655 circ_KaiC circadian 95.4 0.013 2.8E-07 63.2 3.9 41 124-164 17-61 (484)
387 smart00350 MCM minichromosome 95.4 0.02 4.4E-07 62.1 5.4 25 130-154 238-262 (509)
388 COG2804 PulE Type II secretory 95.4 0.027 6E-07 59.5 6.0 56 89-159 233-289 (500)
389 TIGR00017 cmk cytidylate kinas 95.4 0.012 2.6E-07 56.4 3.1 33 131-165 5-37 (217)
390 cd03115 SRP The signal recogni 95.4 0.016 3.4E-07 53.3 3.8 35 131-165 3-40 (173)
391 TIGR02640 gas_vesic_GvpN gas v 95.4 0.03 6.5E-07 55.3 6.0 61 420-481 28-117 (262)
392 PRK05201 hslU ATP-dependent pr 95.4 0.006 1.3E-07 63.5 1.0 56 416-471 52-113 (443)
393 PRK03846 adenylylsulfate kinas 95.4 0.015 3.3E-07 54.8 3.7 38 128-165 24-64 (198)
394 COG3265 GntK Gluconate kinase 95.3 0.01 2.2E-07 52.4 2.3 24 134-157 1-24 (161)
395 PRK14730 coaE dephospho-CoA ki 95.3 0.012 2.6E-07 55.5 2.8 33 131-165 4-36 (195)
396 PRK05480 uridine/cytidine kina 95.3 0.016 3.4E-07 55.1 3.7 25 129-153 7-31 (209)
397 PRK00023 cmk cytidylate kinase 95.3 0.012 2.6E-07 56.8 2.9 29 130-158 6-34 (225)
398 TIGR03499 FlhF flagellar biosy 95.3 0.03 6.5E-07 56.0 5.8 37 128-164 194-235 (282)
399 TIGR00635 ruvB Holliday juncti 95.3 0.017 3.6E-07 58.3 4.0 58 419-483 36-95 (305)
400 PRK14021 bifunctional shikimat 95.3 0.012 2.6E-07 64.3 3.1 33 129-161 7-39 (542)
401 PRK08699 DNA polymerase III su 95.3 0.013 2.9E-07 59.7 3.2 29 126-154 19-47 (325)
402 PF13604 AAA_30: AAA domain; P 95.3 0.025 5.4E-07 53.3 4.9 38 129-166 19-59 (196)
403 PRK11823 DNA repair protein Ra 95.3 0.016 3.4E-07 61.8 3.8 43 124-166 76-121 (446)
404 KOG2028|consensus 95.2 0.031 6.8E-07 56.4 5.5 62 417-483 166-236 (554)
405 PRK10416 signal recognition pa 95.2 0.025 5.5E-07 57.4 5.0 27 127-153 113-139 (318)
406 PF00485 PRK: Phosphoribulokin 95.2 0.013 2.9E-07 55.0 2.8 24 131-154 2-25 (194)
407 TIGR02533 type_II_gspE general 95.2 0.025 5.3E-07 60.9 5.2 51 89-154 217-268 (486)
408 cd00983 recA RecA is a bacter 95.2 0.017 3.7E-07 58.5 3.7 41 124-164 51-94 (325)
409 TIGR03263 guanyl_kin guanylate 95.2 0.01 2.3E-07 54.7 2.0 25 130-154 3-27 (180)
410 PF13479 AAA_24: AAA domain 95.2 0.0094 2E-07 57.0 1.7 20 129-148 4-23 (213)
411 PLN02165 adenylate isopentenyl 95.2 0.013 2.8E-07 59.4 2.8 30 130-159 45-74 (334)
412 PRK05707 DNA polymerase III su 95.2 0.013 2.9E-07 59.7 2.9 30 126-155 20-49 (328)
413 PRK08356 hypothetical protein; 95.2 0.015 3.1E-07 54.8 2.9 32 130-164 7-38 (195)
414 PRK00300 gmk guanylate kinase; 95.2 0.015 3.2E-07 55.0 3.0 27 127-153 4-30 (205)
415 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.021 4.7E-07 54.8 4.1 41 124-164 12-55 (224)
416 PF12775 AAA_7: P-loop contain 95.1 0.022 4.7E-07 56.6 4.2 29 127-155 32-60 (272)
417 PRK13951 bifunctional shikimat 95.1 0.014 3E-07 62.9 2.9 31 130-160 2-32 (488)
418 PF00437 T2SE: Type II/IV secr 95.1 0.022 4.8E-07 56.4 4.2 58 87-155 97-154 (270)
419 PRK10536 hypothetical protein; 95.1 0.016 3.5E-07 56.5 3.0 23 129-151 75-97 (262)
420 cd01393 recA_like RecA is a b 95.1 0.023 4.9E-07 54.5 4.0 29 124-152 15-43 (226)
421 TIGR02236 recomb_radA DNA repa 95.1 0.021 4.6E-07 57.8 4.0 40 124-163 91-139 (310)
422 cd00046 DEXDc DEAD-like helica 95.0 0.035 7.6E-07 47.7 4.8 42 129-170 1-47 (144)
423 cd00009 AAA The AAA+ (ATPases 95.0 0.025 5.4E-07 49.1 3.9 63 419-481 25-96 (151)
424 cd00984 DnaB_C DnaB helicase C 95.0 0.023 5E-07 55.1 4.0 40 124-163 9-52 (242)
425 KOG2680|consensus 95.0 0.016 3.4E-07 57.0 2.7 40 127-166 65-106 (454)
426 PF01202 SKI: Shikimate kinase 95.0 0.011 2.3E-07 53.7 1.5 24 137-160 1-24 (158)
427 cd00071 GMPK Guanosine monopho 95.0 0.018 3.8E-07 51.0 2.8 27 131-157 2-28 (137)
428 PRK00091 miaA tRNA delta(2)-is 95.0 0.016 3.5E-07 58.4 2.8 33 129-161 5-37 (307)
429 cd01128 rho_factor Transcripti 95.0 0.021 4.6E-07 55.9 3.5 29 127-155 15-43 (249)
430 PRK06893 DNA replication initi 95.0 0.036 7.8E-07 53.6 5.1 57 419-485 45-107 (229)
431 PRK12723 flagellar biosynthesi 95.0 0.047 1E-06 56.8 6.3 39 128-166 174-219 (388)
432 COG3842 PotA ABC-type spermidi 95.0 0.014 3.1E-07 59.6 2.3 44 123-166 24-71 (352)
433 PRK12726 flagellar biosynthesi 94.9 0.035 7.5E-07 57.2 5.1 64 98-164 179-245 (407)
434 cd02023 UMPK Uridine monophosp 94.9 0.024 5.3E-07 53.3 3.7 22 131-152 2-23 (198)
435 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.017 3.8E-07 59.6 2.9 30 125-154 59-88 (362)
436 TIGR00455 apsK adenylylsulfate 94.9 0.025 5.4E-07 52.5 3.7 39 127-165 17-58 (184)
437 cd01130 VirB11-like_ATPase Typ 94.9 0.021 4.5E-07 53.3 3.2 28 126-153 23-50 (186)
438 COG1618 Predicted nucleotide k 94.9 0.026 5.6E-07 50.7 3.5 33 127-159 4-36 (179)
439 PRK14737 gmk guanylate kinase; 94.9 0.016 3.4E-07 54.2 2.2 25 128-152 4-28 (186)
440 PRK00081 coaE dephospho-CoA ki 94.9 0.02 4.4E-07 53.8 3.0 33 130-165 4-36 (194)
441 COG3604 FhlA Transcriptional r 94.9 0.041 9E-07 57.8 5.5 66 90-166 219-287 (550)
442 PRK14722 flhF flagellar biosyn 94.8 0.036 7.9E-07 57.3 5.0 26 127-152 136-161 (374)
443 PF02367 UPF0079: Uncharacteri 94.8 0.018 3.8E-07 49.9 2.3 38 126-164 13-50 (123)
444 COG4619 ABC-type uncharacteriz 94.8 0.019 4.2E-07 52.0 2.5 28 126-153 27-54 (223)
445 PRK10867 signal recognition pa 94.8 0.042 9.2E-07 58.0 5.5 40 127-166 99-142 (433)
446 COG1116 TauB ABC-type nitrate/ 94.8 0.015 3.3E-07 56.0 2.0 35 119-153 18-54 (248)
447 PRK04301 radA DNA repair and r 94.8 0.027 5.9E-07 57.3 4.0 40 124-163 98-146 (317)
448 PRK05537 bifunctional sulfate 94.8 0.037 8E-07 60.7 5.2 35 130-164 394-432 (568)
449 PRK10923 glnG nitrogen regulat 94.8 0.05 1.1E-06 58.4 6.2 48 128-175 161-211 (469)
450 PF00931 NB-ARC: NB-ARC domain 94.8 0.027 5.9E-07 56.0 3.9 25 127-151 18-42 (287)
451 PRK07667 uridine kinase; Provi 94.8 0.03 6.5E-07 52.6 3.9 33 131-163 20-55 (193)
452 COG0593 DnaA ATPase involved i 94.8 0.029 6.2E-07 58.4 4.0 43 128-170 113-160 (408)
453 PF04851 ResIII: Type III rest 94.7 0.052 1.1E-06 49.6 5.4 37 127-163 24-60 (184)
454 PRK14738 gmk guanylate kinase; 94.7 0.019 4.1E-07 54.6 2.4 24 128-151 13-36 (206)
455 PRK09376 rho transcription ter 94.7 0.03 6.4E-07 57.9 3.9 27 129-155 170-196 (416)
456 cd01121 Sms Sms (bacterial rad 94.7 0.028 6.2E-07 58.3 3.9 42 124-165 78-122 (372)
457 PRK09518 bifunctional cytidyla 94.7 0.02 4.4E-07 64.7 3.0 28 131-158 4-31 (712)
458 PRK12724 flagellar biosynthesi 94.7 0.077 1.7E-06 55.5 7.0 39 128-166 223-265 (432)
459 PRK00411 cdc6 cell division co 94.7 0.071 1.5E-06 55.8 6.9 65 418-482 60-151 (394)
460 COG0529 CysC Adenylylsulfate k 94.7 0.036 7.8E-07 50.6 3.9 39 128-166 23-64 (197)
461 PRK12337 2-phosphoglycerate ki 94.7 0.022 4.7E-07 60.1 2.8 29 127-155 254-282 (475)
462 TIGR01425 SRP54_euk signal rec 94.7 0.052 1.1E-06 57.1 5.6 40 127-166 99-141 (429)
463 COG1222 RPT1 ATP-dependent 26S 94.7 0.029 6.3E-07 56.6 3.5 137 379-515 145-290 (406)
464 TIGR00174 miaA tRNA isopenteny 94.6 0.026 5.6E-07 56.3 3.2 33 131-163 2-34 (287)
465 cd01131 PilT Pilus retraction 94.6 0.024 5.3E-07 53.4 2.9 24 131-154 4-27 (198)
466 PRK08099 bifunctional DNA-bind 94.6 0.026 5.6E-07 59.2 3.2 36 128-163 219-254 (399)
467 PF00448 SRP54: SRP54-type pro 94.6 0.021 4.5E-07 53.8 2.4 37 128-164 1-40 (196)
468 PRK09862 putative ATP-dependen 94.6 0.058 1.3E-06 58.0 6.0 48 91-153 188-235 (506)
469 PRK04132 replication factor C 94.6 0.019 4.1E-07 65.2 2.3 48 84-144 9-56 (846)
470 PLN02840 tRNA dimethylallyltra 94.6 0.026 5.6E-07 59.0 3.2 33 130-162 23-55 (421)
471 TIGR01526 nadR_NMN_Atrans nico 94.5 0.025 5.5E-07 57.7 3.0 36 128-163 162-197 (325)
472 PRK06964 DNA polymerase III su 94.5 0.025 5.4E-07 57.9 2.9 31 126-156 19-49 (342)
473 COG0428 Predicted divalent hea 94.5 0.069 1.5E-06 52.8 6.0 85 223-328 180-264 (266)
474 TIGR00152 dephospho-CoA kinase 94.5 0.026 5.5E-07 52.7 2.7 33 131-165 2-34 (188)
475 PRK11889 flhF flagellar biosyn 94.5 0.051 1.1E-06 56.3 5.0 60 100-163 217-279 (436)
476 cd01672 TMPK Thymidine monopho 94.5 0.037 8E-07 51.6 3.7 23 131-153 3-25 (200)
477 PRK04195 replication factor C 94.5 0.077 1.7E-06 57.2 6.6 61 419-483 45-112 (482)
478 PRK13764 ATPase; Provisional 94.4 0.025 5.5E-07 61.9 2.9 28 127-154 256-283 (602)
479 PRK14733 coaE dephospho-CoA ki 94.4 0.027 5.8E-07 53.4 2.6 30 129-158 7-36 (204)
480 COG2255 RuvB Holliday junction 94.4 0.033 7.2E-07 54.5 3.3 57 419-482 58-116 (332)
481 KOG3928|consensus 94.4 0.059 1.3E-06 55.3 5.1 38 126-163 177-215 (461)
482 TIGR02915 PEP_resp_reg putativ 94.4 0.08 1.7E-06 56.4 6.5 72 94-176 139-213 (445)
483 PF10662 PduV-EutP: Ethanolami 94.4 0.026 5.6E-07 50.1 2.2 22 129-150 2-23 (143)
484 PRK04201 zinc transporter ZupT 94.4 0.055 1.2E-06 53.5 4.8 85 222-328 180-264 (265)
485 TIGR02782 TrbB_P P-type conjug 94.3 0.063 1.4E-06 54.1 5.3 27 127-153 131-157 (299)
486 PRK13477 bifunctional pantoate 94.3 0.03 6.5E-07 60.3 3.0 36 129-166 285-320 (512)
487 TIGR02655 circ_KaiC circadian 94.3 0.041 9E-07 59.3 4.1 43 124-166 259-304 (484)
488 PRK09354 recA recombinase A; P 94.2 0.042 9.1E-07 56.2 3.8 43 124-166 56-101 (349)
489 PRK14974 cell division protein 94.2 0.061 1.3E-06 55.0 4.9 26 128-153 140-165 (336)
490 COG0466 Lon ATP-dependent Lon 94.2 0.057 1.2E-06 59.2 4.8 65 419-484 356-432 (782)
491 PRK12608 transcription termina 94.2 0.036 7.9E-07 57.0 3.2 26 129-154 134-159 (380)
492 COG5271 MDN1 AAA ATPase contai 94.2 0.043 9.3E-07 64.8 4.0 37 128-164 1543-1579(4600)
493 cd01122 GP4d_helicase GP4d_hel 94.2 0.044 9.5E-07 54.2 3.7 40 124-163 26-69 (271)
494 cd00544 CobU Adenosylcobinamid 94.2 0.046 1E-06 50.2 3.5 32 131-162 2-33 (169)
495 PRK10436 hypothetical protein; 94.1 0.081 1.8E-06 56.5 5.8 52 89-155 193-245 (462)
496 PRK14088 dnaA chromosomal repl 94.1 0.041 8.9E-07 58.5 3.6 65 420-485 137-210 (440)
497 PF13555 AAA_29: P-loop contai 94.1 0.053 1.1E-06 40.8 3.1 23 130-152 25-47 (62)
498 cd01673 dNK Deoxyribonucleosid 94.1 0.034 7.5E-07 51.9 2.7 24 131-154 2-25 (193)
499 PRK11361 acetoacetate metaboli 94.1 0.089 1.9E-06 56.2 6.2 49 128-176 166-217 (457)
500 COG4650 RtcR Sigma54-dependent 94.1 0.064 1.4E-06 52.6 4.4 65 121-185 201-272 (531)
No 1
>KOG0733|consensus
Probab=100.00 E-value=2.5e-49 Score=405.17 Aligned_cols=377 Identities=28% Similarity=0.459 Sum_probs=246.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+.++++|+||||++++..++.+.+.. ++||+.|..+|+.||+|+|||||||||||++|+|+|+++++||+.|++.++.|
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 45589999999999999999999988 99999999999999999999999999999999999999999999999999987
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCC-------------ccCCCCCccccccccCCCCc
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHS-------------HDHGKLPSFKYSKQANEPYH 214 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~~~ 214 (515)
+.+| ||+|+| +|+|.++|+..+..-|.. ...-..+.......|++|..
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 7788 788888 999999998654221100 00000011222333444422
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCC
Q psy11253 215 QDVKHPITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHS 294 (515)
Q Consensus 215 ~~~~~~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~ 294 (515)
.| |-.. -.+.+=..+++-++....++.+|+.+.- |. ...+.++.
T Consensus 342 lD---paLR-------------RaGRFdrEI~l~vP~e~aR~~IL~~~~~---~l--------------rl~g~~d~--- 385 (802)
T KOG0733|consen 342 LD---PALR-------------RAGRFDREICLGVPSETAREEILRIICR---GL--------------RLSGDFDF--- 385 (802)
T ss_pred cC---HHHh-------------ccccccceeeecCCchHHHHHHHHHHHh---hC--------------CCCCCcCH---
Confidence 21 0000 1112223445555566667777776651 11 11000000
Q ss_pred CCCCCCCCcchhhhhh-----HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccc--CCCCCCCCCCCCCCC-----
Q psy11253 295 HGGSHEHSHSIADLSV-----GLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKK--HTSSGEDSDLSDDED----- 362 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~-----g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~~----- 362 (515)
..++..+. -+..++--..+.++.+.+......... .+..+.. .......++...+..
T Consensus 386 --------~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~---~~~~ed~~~~~~~~d~S~i~~~~~~~~~~ 454 (802)
T KOG0733|consen 386 --------KQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTK---VPISEDSSNKDAEEDQSSIKITSNAERPL 454 (802)
T ss_pred --------HHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcccc---CCccccccCCCccchhhhhhcCCcccccc
Confidence 00111111 122233333444555544322110000 0000000 000000000000000
Q ss_pred ------------CCCcc-------------ch---------hhhhhhcccCCCCCCccch----hhhhhhhhhhhhcccc
Q psy11253 363 ------------DSDDV-------------DY---------KKTKRVKAKTSSQSNDDIA----VAGYLNLAADFTHNFT 404 (515)
Q Consensus 363 ------------~~~~~-------------~~---------~~~~~~~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~ 404 (515)
..+.. ++ ...+.+-...|.++|++|+ +..-|+....++-..+
T Consensus 455 ~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~p 534 (802)
T KOG0733|consen 455 ELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRP 534 (802)
T ss_pred cHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCH
Confidence 00000 00 0111223345788999997 4556777888888889
Q ss_pred cccc-ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHHHHhhCCeEEEechhh
Q psy11253 405 DGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEID 479 (515)
Q Consensus 405 dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D 479 (515)
|-+. +|...+.|+++ | ||||||.+|+++|.|.+..++.+ ..+++|||||||+.||.+|.+||+.+||||||||+|
T Consensus 535 d~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiD 614 (802)
T KOG0733|consen 535 DLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEID 614 (802)
T ss_pred HHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchh
Confidence 9874 99999999998 8 99999999999999988655555 489999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 480 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 480 ~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+++++|+.+.++. ..|+|||||+||||++.+.
T Consensus 615 aL~p~R~~~~s~~---s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 615 ALVPRRSDEGSSV---SSRVVNQLLTELDGLEERR 646 (802)
T ss_pred hcCcccCCCCchh---HHHHHHHHHHHhccccccc
Confidence 9999996665443 4599999999999997653
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-46 Score=363.31 Aligned_cols=130 Identities=57% Similarity=0.950 Sum_probs=127.2
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
++++++|++.+.+.+++++|+||++|++++.+++++..||++.||.++.|.+++.|+++|+||||+++|+++|+|+|++|
T Consensus 91 s~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELP 170 (406)
T COG1222 91 SSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELP 170 (406)
T ss_pred eCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
+++|++|+++||.||||||||||||||||++|||+|+++++.|++|.+|+
T Consensus 171 L~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred ccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 99999999999999999999999999999999999999999999887766
No 3
>KOG0730|consensus
Probab=100.00 E-value=1.3e-41 Score=353.57 Aligned_cols=352 Identities=30% Similarity=0.449 Sum_probs=239.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH--
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI-- 166 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~-- 166 (515)
++++ .++||+..+.+.+++.+++|+.++.++...|+++|+|+|+|||||||||++++++|++.++.++.++++++.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 8999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------HHHH---------HHHhhc-CCcccCCCCCCCCCCCCCc-------cCCCC-Ccc-ccccccCCCCccCCCC
Q psy11253 167 --------VLIF---------AVIFLH-MPNLCDSHGHSHHSHEHSH-------DHGKL-PSF-KYSKQANEPYHQDVKH 219 (515)
Q Consensus 167 --------~~~f---------~~~f~~-~d~~~~~r~~~~~~~e~~~-------~~~~~-~~~-~~~~~~~~~~~~~~~~ 219 (515)
+..| .++|+| +|+++++|...... ++.- ..+.. ... .-+..++++...|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~-e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld--- 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDV-ESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD--- 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchH-HHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC---
Confidence 6666 266666 99999999865430 0000 00000 000 0011111221111
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCC
Q psy11253 220 PITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSH 299 (515)
Q Consensus 220 ~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~ 299 (515)
|...+ ..+-..+.+.+++...+..+++.+. ..++. . ++
T Consensus 335 ~alRR--------------gRfd~ev~IgiP~~~~RldIl~~l~--------------------k~~~~-------~-~~ 372 (693)
T KOG0730|consen 335 PALRR--------------GRFDREVEIGIPGSDGRLDILRVLT--------------------KKMNL-------L-SD 372 (693)
T ss_pred hhhhc--------------CCCcceeeecCCCchhHHHHHHHHH--------------------HhcCC-------c-ch
Confidence 00000 0011111222222223333333332 11100 0 11
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccC
Q psy11253 300 EHSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKT 379 (515)
Q Consensus 300 ~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (515)
......+..+. +..++.+..+|.+..++..+. +.+.- ............+...-..
T Consensus 373 ~~l~~iA~~th--GyvGaDL~~l~~ea~~~~~r~---~~~~~-------------------~~A~~~i~psa~Re~~ve~ 428 (693)
T KOG0730|consen 373 VDLEDIAVSTH--GYVGADLAALCREASLQATRR---TLEIF-------------------QEALMGIRPSALREILVEM 428 (693)
T ss_pred hhHHHHHHHcc--chhHHHHHHHHHHHHHHHhhh---hHHHH-------------------HHHHhcCCchhhhheeccC
Confidence 11112222233 335677888888888876654 00000 0000000111112222345
Q ss_pred CCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceeccc
Q psy11253 380 SSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKY 450 (515)
Q Consensus 380 ~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~ 450 (515)
+..+|++|+ ++--|.....|+-.+++-+. +|..+++|+++ | |||+||.++++++.+.+. .++....+++||
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 778999997 56677778888888898886 99999999998 8 999999999999999885 444445899999
Q ss_pred ccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 451 IGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 451 ~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+||||++|+.+|+.||+.+||||||||||++++.|++..+ ....|++|+||+||||+....
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccC
Confidence 9999999999999999999999999999999999964433 455699999999999998753
No 4
>KOG0727|consensus
Probab=100.00 E-value=1.2e-40 Score=309.54 Aligned_cols=130 Identities=42% Similarity=0.763 Sum_probs=124.3
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
+.+|++|+++|.+.++++.|||+.+|++++.+..++..+|++.|++++.+..++.|+++|.||||++-+||+++|++++|
T Consensus 95 sttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelp 174 (408)
T KOG0727|consen 95 STTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELP 174 (408)
T ss_pred cccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
+.|.++|++.||.||+|+|||||||||||++|+|+|+...+.|++|.+++
T Consensus 175 lt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 175 LTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred chHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 99999999999999999999999999999999999987777776665554
No 5
>KOG0726|consensus
Probab=100.00 E-value=3.4e-36 Score=284.88 Aligned_cols=126 Identities=46% Similarity=0.765 Sum_probs=119.8
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
++.+++||+.|.+.|+++.|.||+.|.++.+..+++..|..+.||.++.|.+++.|..+|.||||++.|+|+|+|.+++|
T Consensus 125 t~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELP 204 (440)
T KOG0726|consen 125 TSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELP 204 (440)
T ss_pred cccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
+.||++|+.+||+||+||+|||+||||||++|+|+|++..+.|+++
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv 250 (440)
T KOG0726|consen 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV 250 (440)
T ss_pred CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence 9999999999999999999999999999999999998655444433
No 6
>KOG0728|consensus
Probab=100.00 E-value=4.3e-34 Score=265.57 Aligned_cols=132 Identities=48% Similarity=0.810 Sum_probs=125.8
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
......|++++...++-..++|+.+|++..+++.+.+.||..+||.++.|.+++.|+.+|+.|||+++|+++|+|.|++|
T Consensus 87 vhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLP 166 (404)
T KOG0728|consen 87 VHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 166 (404)
T ss_pred EcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhcc
Confidence 44456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+||++|+.+||..|+|+|||||||||||++|+++|....+.|++|+++++.
T Consensus 167 vKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 167 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred ccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 9999999999999999999999999999999999999999999988877643
No 7
>KOG0652|consensus
Probab=100.00 E-value=4.9e-34 Score=266.55 Aligned_cols=123 Identities=45% Similarity=0.718 Sum_probs=116.8
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
+++...|+.-+...++.++|+||+.|.++..++-+++.||.++|+++..|.++++|+.+|+||||+++|++++.|+|.+|
T Consensus 111 tStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLp 190 (424)
T KOG0652|consen 111 TSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLP 190 (424)
T ss_pred cccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccc
Confidence 66777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
+.|++.|+.+||.||+|+|+|||||||||++|||.|.+.+..|
T Consensus 191 mth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 191 MTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 9999999999999999999999999999999999997665433
No 8
>KOG0651|consensus
Probab=100.00 E-value=3.1e-33 Score=267.44 Aligned_cols=127 Identities=76% Similarity=1.213 Sum_probs=121.0
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.++|++|++.|+..+|+.++++|+++.++..+..++..+|+++| .+.++..+.+.+++|+.+||+-.++.++++.|++|
T Consensus 73 ~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielp 151 (388)
T KOG0651|consen 73 ASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELP 151 (388)
T ss_pred cCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEee
Confidence 78899999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+.++++|.++||++|++++||||||||||++|+++|..++++|+.+++
T Consensus 152 l~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s 199 (388)
T KOG0651|consen 152 LTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS 199 (388)
T ss_pred ccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH
Confidence 999999999999999999999999999999999999888766665543
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.3e-33 Score=311.73 Aligned_cols=376 Identities=29% Similarity=0.383 Sum_probs=219.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..++++|+||+|++.+++.+++.+.+|+.++++|+.+|+.+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCCccC---------CCCCccccccccCCCCccCCC
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHSHDH---------GKLPSFKYSKQANEPYHQDVK 218 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 218 (515)
+.+| +++|+| +|+++..|+......+..-.. ...........++.+...|
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld-- 328 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD-- 328 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC--
Confidence 4455 355655 999999886432211100000 0000000111111111000
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhcccccc-chhhhcccccccCCCCCCCCCCCCC
Q psy11253 219 HPITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLG-DAFLHLIPHAIGASKEHSHSHSHGG 297 (515)
Q Consensus 219 ~~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~-~a~~~LLPea~~~~~~~~~~~~~~~ 297 (515)
..+.....+-..+.++.+....+..++.... -+..+. +..+.-+.+
T Consensus 329 --------------~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~---~~~~l~~d~~l~~la~---------------- 375 (733)
T TIGR01243 329 --------------PALRRPGRFDREIVIRVPDKRARKEILKVHT---RNMPLAEDVDLDKLAE---------------- 375 (733)
T ss_pred --------------HHHhCchhccEEEEeCCcCHHHHHHHHHHHh---cCCCCccccCHHHHHH----------------
Confidence 0000001111234445554344444444222 222110 000000000
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCCCCCCCC----CCccchhhhh
Q psy11253 298 SHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDD----SDDVDYKKTK 373 (515)
Q Consensus 298 ~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 373 (515)
.+.| +....+..++.+..+..+++............... ............+ ...+......
T Consensus 376 ----------~t~G--~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~--~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 376 ----------VTHG--FVGADLAALAKEAAMAALRRFIREGKINFEAEEIP--AEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred ----------hCCC--CCHHHHHHHHHHHHHHHHHHHhhcccccccccccc--chhcccccccHHHHHHHHhhccccccc
Confidence 0000 01122223333333333221000000000000000 0000000000000 0000000001
Q ss_pred hhcccCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCCeE--Eeee
Q psy11253 374 RVKAKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIH 444 (515)
Q Consensus 374 ~~~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~ 444 (515)
......+...|.++. ++..+.....+....++-+. +|...+.+.++ | ||||||.++++++.+++... +..+
T Consensus 442 ~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 111223456787775 44555555555555666553 67777888776 8 99999999999999988544 4445
Q ss_pred ceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 445 AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 445 ~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
.++++|+|++|++|+.+|+.|+..+||||||||||+++++|+....+ ....+++|+||++|||+...
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~--~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDT--SVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCc--cHHHHHHHHHHHHhhcccCC
Confidence 79999999999999999999999999999999999999999543322 24468999999999998654
No 10
>KOG0729|consensus
Probab=99.98 E-value=1.1e-32 Score=258.13 Aligned_cols=129 Identities=49% Similarity=0.858 Sum_probs=116.8
Q ss_pred cCCCCcEEEEec----------cccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHH
Q psy11253 34 TTNGPRYVVGCR----------RQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQI 103 (515)
Q Consensus 34 ~~~~~~~~~~~~----------~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~ 103 (515)
.+..++|+..++ ..+....+..|.+|.+++..+++.--||+..||++..|.+++.|+++|+||||-.+++
T Consensus 107 ~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqi 186 (435)
T KOG0729|consen 107 NSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQI 186 (435)
T ss_pred CCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHH
Confidence 456677876665 4567778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 104 RELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 104 ~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+.++|.+++|+.||+.|..+||.||+|+|||||||||||+.|||+|+..++.|++|-+|
T Consensus 187 eklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 187 EKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred HHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 99999999999999999999999999999999999999999999998777766665433
No 11
>KOG0736|consensus
Probab=99.96 E-value=1.1e-30 Score=274.73 Aligned_cols=137 Identities=26% Similarity=0.410 Sum_probs=115.2
Q ss_pred hcccCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ce
Q psy11253 375 VKAKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AI 446 (515)
Q Consensus 375 ~~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~ 446 (515)
+.++.|++.|+||+ ++..+.--...+-.+++-+.-|....+|+++ | ||||||.+|+++|.|+.+..+.+. ++
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 56788999999997 4554444555566777888888887888887 8 999999999999999886555554 89
Q ss_pred ecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 447 ~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
+++|+||||+|+|++|++||+.+||||||||+||++++|+..+.++ ..+.|+|+|||.||||+..
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999995333332 3678999999999999875
No 12
>KOG0738|consensus
Probab=99.95 E-value=5.8e-28 Score=237.38 Aligned_cols=79 Identities=42% Similarity=0.690 Sum_probs=71.2
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+.++...|.+.|+||.|+.++|+.|+|+|.+|+..|+.|+.+ ..|+||+||+||||||||++|||+|.+++.+|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 345678899999999999999999999999999999999985 4789999999999999999999999999877776543
No 13
>KOG0735|consensus
Probab=99.95 E-value=1.7e-28 Score=255.89 Aligned_cols=130 Identities=26% Similarity=0.431 Sum_probs=112.1
Q ss_pred CCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ceeccccc
Q psy11253 382 QSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIVDKYIG 452 (515)
Q Consensus 382 ~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~s~~~g 452 (515)
..|.+++ .+..+.....++..++.-++ .+.....|.++ | ||||||.++-+++...++-.|.+. .+++||.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 6788886 45666667777877777665 67777788887 8 999999999999999997777765 79999999
Q ss_pred chHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 453 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 453 ~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
.||+++|.+|.+|+..+||||||||+|+++++|+....+..+ |+|||||+||||.++..
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTD---RVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD---RVVNQLLTELDGAEGLD 802 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchH---HHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999666666555 89999999999998853
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=240.44 Aligned_cols=155 Identities=39% Similarity=0.702 Sum_probs=143.6
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.+++++|++.+.+.+++++++||++|.++..+..+++.+|.+.++.+..+.+.+.|+++|+||||++.++++|++.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~p 164 (398)
T PTZ00454 85 STSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELP 164 (398)
T ss_pred cCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH--------HHHhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF--------AVIFL 175 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f--------~~~f~ 175 (515)
+.++++|.++|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.. +.+| +++|+
T Consensus 165 l~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfI 244 (398)
T PTZ00454 165 LTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFI 244 (398)
T ss_pred hcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999988764 3344 35565
Q ss_pred c-CCcccCCCCCCC
Q psy11253 176 H-MPNLCDSHGHSH 188 (515)
Q Consensus 176 ~-~d~~~~~r~~~~ 188 (515)
| +|+++.+|.+..
T Consensus 245 DEID~i~~~r~~~~ 258 (398)
T PTZ00454 245 DEVDSIATKRFDAQ 258 (398)
T ss_pred ECHhhhcccccccc
Confidence 6 999999886543
No 15
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.93 E-value=4.7e-26 Score=237.12 Aligned_cols=158 Identities=41% Similarity=0.709 Sum_probs=145.6
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
+++|++|++.+.+.+++++|+||++|.++..+..++..+|.+.|+.+..+.+++.|+++|+||||++++++++++++++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lp 202 (438)
T PTZ00361 123 SSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELP 202 (438)
T ss_pred eCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH--------HHHhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF--------AVIFL 175 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f--------~~~f~ 175 (515)
+.++++|+.+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.+ +.+| +++|+
T Consensus 203 l~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfI 282 (438)
T PTZ00361 203 LTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFI 282 (438)
T ss_pred hhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeH
Confidence 99999999999999999999999999999999999999999999999998854 3444 35555
Q ss_pred c-CCcccCCCCCCCCCC
Q psy11253 176 H-MPNLCDSHGHSHHSH 191 (515)
Q Consensus 176 ~-~d~~~~~r~~~~~~~ 191 (515)
| +|+++.+|.....++
T Consensus 283 DEID~l~~kR~~~~sgg 299 (438)
T PTZ00361 283 DEIDAIGTKRYDATSGG 299 (438)
T ss_pred HHHHHHhccCCCCCCcc
Confidence 5 999999887654443
No 16
>KOG0730|consensus
Probab=99.91 E-value=1.2e-25 Score=234.89 Aligned_cols=173 Identities=35% Similarity=0.547 Sum_probs=126.2
Q ss_pred cccchHHHHHHHHHHHHHHHH--HHHhhhhhh--cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccc
Q psy11253 4 PVVDEVRHKTLQDYRKKLTEH--AEVEGRLRE--TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPL 79 (515)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~ 79 (515)
.|+.+.|.++++.+.+++.-. ..++.-.+. ..+|.+....|+.. .++...+ +............|+
T Consensus 350 iP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea----~~~~~r~------~~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 350 IPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREA----SLQATRR------TLEIFQEALMGIRPS 419 (693)
T ss_pred CCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHH----HHHHhhh------hHHHHHHHHhcCCch
Confidence 588899999999999887322 111111110 22222222222221 1111111 111222222344555
Q ss_pred cccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 80 VYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 80 ~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
..+....+.|+++|+||||++++|++++++|++|++|++.|.++|+.||||||||||||||||++|||+|++++++|+.|
T Consensus 420 a~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 420 ALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred hhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 55666689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 160 VSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 160 ~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+++++.+ +.+| ||+|.| +|+++++|++
T Consensus 500 kgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g 545 (693)
T KOG0730|consen 500 KGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG 545 (693)
T ss_pred cCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC
Confidence 9999998 5555 455555 9999999973
No 17
>KOG0736|consensus
Probab=99.90 E-value=2e-24 Score=227.72 Aligned_cols=111 Identities=40% Similarity=0.673 Sum_probs=100.1
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+-..+.|+|+|+||||++++|++|.+.|.+|++||++|.. |+.+..|||||||||||||++|||+|.+++..|+.|.|+
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 3446789999999999999999999999999999999987 888899999999999999999999999999999999999
Q ss_pred hhhH----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCC
Q psy11253 163 TIAI----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHS 194 (515)
Q Consensus 163 ~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~ 194 (515)
++.. |.+| ||||.| +|+++++|+.++++|...
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVM 790 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVM 790 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccH
Confidence 9986 7777 555555 999999999888776543
No 18
>KOG0733|consensus
Probab=99.90 E-value=2.1e-24 Score=222.53 Aligned_cols=113 Identities=37% Similarity=0.599 Sum_probs=103.3
Q ss_pred cccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 76 VDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+.|+..+.-+...|+|+|+|||++++++.++..+|.+|.++|++|+++|+.+|.|||||||||||||++|||+|++.+++
T Consensus 493 iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 493 IQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred cCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 45666677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecchhhH----------HHHH--------HHHh-hcCCcccCCCCCCC
Q psy11253 156 FLKVVSRTIAI----------VLIF--------AVIF-LHMPNLCDSHGHSH 188 (515)
Q Consensus 156 ~~~v~~~~~~~----------~~~f--------~~~f-~~~d~~~~~r~~~~ 188 (515)
|+.|.|++|.. |++| |||| ||+|++++.|++..
T Consensus 573 FisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 573 FISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred eEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 99999999987 6677 5555 55999999998766
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.4e-24 Score=227.90 Aligned_cols=134 Identities=27% Similarity=0.381 Sum_probs=110.6
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhC--CeEEeeeceec
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIG--DFAILIHAIVD 448 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~~~i~~~~~~s 448 (515)
..+...|.+++ .+.++.....++-..++.+. .|..++.+.++ | ||||||++|++++.+++ ++.+...++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 34556777775 56777777777777887755 47777888777 8 99999999999999777 45555568999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+|+||+|++|+.+|+.|++.+||||||||+|+++..|+....+.. ++++|+||++||+.....
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAE 377 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccC
Confidence 999999999999999999999999999999999999965544433 589999999999988654
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=1.5e-23 Score=217.86 Aligned_cols=157 Identities=48% Similarity=0.835 Sum_probs=143.5
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.++|..|++.+...++.+.+++|..|.++.....+.+.+|...++.+..+.+.+.|+++|+||+|++++++++++.+++|
T Consensus 71 ~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~p 150 (389)
T PRK03992 71 SSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELP 150 (389)
T ss_pred ECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH--------HHHhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF--------AVIFL 175 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f--------~~~f~ 175 (515)
+.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.+ +.+| +++|+
T Consensus 151 l~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Ilfi 230 (389)
T PRK03992 151 LKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFI 230 (389)
T ss_pred hhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999864 3445 35555
Q ss_pred c-CCcccCCCCCCCCC
Q psy11253 176 H-MPNLCDSHGHSHHS 190 (515)
Q Consensus 176 ~-~d~~~~~r~~~~~~ 190 (515)
| +|+++..|.....+
T Consensus 231 DEiD~l~~~r~~~~~~ 246 (389)
T PRK03992 231 DEIDAIAAKRTDSGTS 246 (389)
T ss_pred echhhhhcccccCCCC
Confidence 5 99999988765433
No 21
>KOG0731|consensus
Probab=99.89 E-value=5.8e-23 Score=220.92 Aligned_cols=78 Identities=41% Similarity=0.726 Sum_probs=73.8
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+....++|.|+.|.+++|++|.|.|.. +++|+.|.++|.+.|||+||.||||||||++|||+|.+.+.||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 445569999999999999999999988 999999999999999999999999999999999999999999999999883
No 22
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.88 E-value=1.4e-22 Score=209.63 Aligned_cols=155 Identities=50% Similarity=0.861 Sum_probs=142.1
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
++++.+|++.+.+.++++.+++|++|.++..+..++..+|...++.+..+.+.+.|+++|+||+|++++++++++++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~ 141 (364)
T TIGR01242 62 SSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELP 141 (364)
T ss_pred eCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH--------HHHhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF--------AVIFL 175 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f--------~~~f~ 175 (515)
+.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.. +.+| +++|+
T Consensus 142 ~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~i 221 (364)
T TIGR01242 142 LKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFI 221 (364)
T ss_pred hcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEh
Confidence 99999999999999999999999999999999999999999999999888754 3333 35555
Q ss_pred c-CCcccCCCCCCC
Q psy11253 176 H-MPNLCDSHGHSH 188 (515)
Q Consensus 176 ~-~d~~~~~r~~~~ 188 (515)
| +|+++..|....
T Consensus 222 DEiD~l~~~~~~~~ 235 (364)
T TIGR01242 222 DEIDAIAAKRTDSG 235 (364)
T ss_pred hhhhhhccccccCC
Confidence 5 999998886544
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.86 E-value=5e-22 Score=209.65 Aligned_cols=150 Identities=36% Similarity=0.681 Sum_probs=130.8
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.+.++++++.+...+..+.+++|+.+.++..+....+.+|+. .+..+..++.|+++|+||||++.+++++++.+++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp 201 (512)
T TIGR03689 125 DHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKA---EVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELP 201 (512)
T ss_pred eCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHh---HHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHH
Confidence 667888999999999999999999999999988888888865 35566778999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc----------ceEEecchhhH----------HHHH---
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN----------FLKVVSRTIAI----------VLIF--- 170 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~----------~~~v~~~~~~~----------~~~f--- 170 (515)
+.++++|..+|+.+|+|+|||||||||||++|+++|++++.+ |+.++++++.+ +.+|
T Consensus 202 ~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~A 281 (512)
T TIGR03689 202 FLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRA 281 (512)
T ss_pred hhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998755 66777776643 3344
Q ss_pred ---------HHHhhc-CCcccCCCCC
Q psy11253 171 ---------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 171 ---------~~~f~~-~d~~~~~r~~ 186 (515)
|++|+| +|+++.+|+.
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~ 307 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGS 307 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCC
Confidence 355555 9999999864
No 24
>KOG2693|consensus
Probab=99.85 E-value=4e-22 Score=205.93 Aligned_cols=251 Identities=35% Similarity=0.509 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhheeeeccCCCC-CChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCC---
Q psy11253 222 TLQVWGEALLSTILISLAPFLILFVVPLDTAT-GNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGG--- 297 (515)
Q Consensus 222 ~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~-~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~--- 297 (515)
..++|+|++++++++++++++++.++|++.++ ....++.+++++|+|.|++++++||+||++....+..+.+.+..
T Consensus 129 ~~~~w~~g~~a~~lisl~~~l~l~lvP~~~~~~~~~~~l~~l~a~a~gtL~gDa~lhLiP~~l~~~~~~~~~~s~~~~~~ 208 (453)
T KOG2693|consen 129 TKELWLYGILATLLISLAPLLGLLLVPLRKNSKKKLELLIFLLALAVGTLLGDALLHLIPEALGFHSHLSNGVSHVTSLA 208 (453)
T ss_pred ceeeEEechHHHHHHHHHHhhheeeccccccchhHHHHHHHHHHHHHhhhhHHHHhhhCchhcccccCccCCcccccchh
Confidence 46789999999999999999999999999776 66789999999999999999999999999997654322221111
Q ss_pred ---CCCCCcch-hhhhhHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCCCCcccccCCCCCCCCCCCCCCCCCCccchh
Q psy11253 298 ---SHEHSHSI-ADLSVGLWVLFGILAFLCVEKFVRYVKGGH---GHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYK 370 (515)
Q Consensus 298 ---~~~~~~~~-~~~~~g~~~l~G~~~~~~le~~i~~~~~~~---~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (515)
...+.... ......++ +.+...++..+..++..++.+ +|.|.+...... ........+.++..+-...
T Consensus 209 ~~~g~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~~~~~g~~~~~gh~h~~~~~~~~----~~e~~~~~~~~~~~d~~~~ 283 (453)
T KOG2693|consen 209 MTGGKYHFFSNESNLSIFLA-VLGVSLLFVTEKNMRALKGGGKHHGHSHGHSNTYNP----GSEKITLNVKDGVGDSVSL 283 (453)
T ss_pred hcccceeeecccccceeeee-eechHHhhccccchhhccCCCCCCCccCCcCCCcCc----ccccccccccccCCCcccc
Confidence 00111110 11111222 223555666677777766643 444433322211 0000000000000000000
Q ss_pred hhhhhcccCCCCCCccchhhhhhhhhhhhhccccccccccccccccccccchhHHHHHHHhhhhhhCCeEEeeeceeccc
Q psy11253 371 KTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGASYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKY 450 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~ 450 (515)
+......+.+.....++++++||++++|++|||.||+|+|++|..+...|..|+.|++||++|+|+|+|+|++++++++.
T Consensus 284 ~~~~~~~~~~~~~~~~l~~~aymil~gD~~HNFtDGLAiGAaF~~s~~~G~sTsiAVlcHElPHELGDFAILl~sG~s~k 363 (453)
T KOG2693|consen 284 SSSSFEHKLEEFEVEELKKVAYMILAGDGLHNFTDGLAIGAAFTSSLLHGISTSLAVLCHEFPHELGDFAILLRSGLSVK 363 (453)
T ss_pred CCcchhcccccccccchhhHhHHHHhccccccchhhhhhccccccccchhHHHHHHHHHHhccHHHHHHHHHHHcCCcHH
Confidence 00001111122224567889999999999999999999999999999999999999999999999999999999998875
Q ss_pred ccchHHHHHHHHHHHHhhCCeEEEechhh
Q psy11253 451 IGESARLIREMFNYARDHQPCIIFMDEID 479 (515)
Q Consensus 451 ~g~~~~~i~~~f~~A~~~~p~ilf~DE~D 479 (515)
.--=-+.+..+-..+... --+++++.|
T Consensus 364 qAl~lnllsal~a~~G~~--ig~~~~~~~ 390 (453)
T KOG2693|consen 364 QALLLNLLSALTAFAGLA--IGLVLGAGD 390 (453)
T ss_pred HHHHHHHHhHHHHHhhhh--eeEEecCCC
Confidence 322223333333333332 356777663
No 25
>KOG0739|consensus
Probab=99.84 E-value=1.1e-20 Score=180.31 Aligned_cols=132 Identities=29% Similarity=0.444 Sum_probs=106.0
Q ss_pred hcccCCCCCCccch--------hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhC--CeEEe
Q psy11253 375 VKAKTSSQSNDDIA--------VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIG--DFAIL 442 (515)
Q Consensus 375 ~~~~~~~~~~~~i~--------~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~~~i~ 442 (515)
.....|++.|.|++ .+.-.++...++|-|. -.-.+.++.++ | |||||+-+|++++.+.+ +|+|.
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt----GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT----GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhc----CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 34556889999995 2333444555555543 33445667666 8 99999999999999988 68888
Q ss_pred eeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 443 IHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 443 ~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
.++++|||.||||+.++.+|++||++.|+||||||||++|++|+.+.+... +|+-++||.||.|....
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseas---RRIKTEfLVQMqGVG~d 266 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEAS---RRIKTEFLVQMQGVGND 266 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHH---HHHHHHHHHhhhccccC
Confidence 889999999999999999999999999999999999999999966655444 46677999999998653
No 26
>KOG0739|consensus
Probab=99.84 E-value=5.8e-21 Score=182.23 Aligned_cols=104 Identities=35% Similarity=0.666 Sum_probs=94.4
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
.-++.+.|+|.|+||.|++.+|+.++|+|.+|++.|++|..- -.|++||||||||||||+.+|+|+|.+.+..|+.|+.
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 345678999999999999999999999999999999999974 4678999999999999999999999999999999999
Q ss_pred chhhHH----------HHH--------HHHhhc-CCcccCCCCC
Q psy11253 162 RTIAIV----------LIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 162 ~~~~~~----------~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
++++|+ .+| .|||+| +|++|.+|+.
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e 243 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE 243 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC
Confidence 999984 445 388888 9999999875
No 27
>KOG2694|consensus
Probab=99.81 E-value=2.5e-20 Score=172.96 Aligned_cols=216 Identities=37% Similarity=0.645 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHhhhhhhheeeeccC-----CCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCC
Q psy11253 224 QVWGEALLSTILISLAPFLILFVVPLD-----TATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGS 298 (515)
Q Consensus 224 ~~w~~~~l~~~ii~~~~~l~~~~vp~~-----~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~ 298 (515)
..|+|+++.+.++++.+++-.+++|.. ......+.++.+++|+.|.|+|+.|+|||||+++..+. ++
T Consensus 66 d~Wi~sLlGs~~vglsGifPl~~iP~e~~~~l~s~ag~~rL~~LLsFAiGgLLgdVFLHLLPEAwe~~n~--------~p 137 (361)
T KOG2694|consen 66 DMWIYSLLGSSLVGLSGIFPLFLIPAEIHVLLSSSAGQRRLNLLLSFAIGGLLGDVFLHLLPEAWESNNQ--------DP 137 (361)
T ss_pred chhHHHHhhhHHHhhcccceeeeechhhhhhccCchhHHHHHHHHHHHHhhHHHHHHHHhCHHHHhccCC--------CC
Confidence 359999999999999999988888864 33456789999999999999999999999999997411 11
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhccc
Q psy11253 299 HEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAK 378 (515)
Q Consensus 299 ~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (515)
..+. .....|+|++.|++.|.++|++...-+. .+|.... ...........+..+-....+. .+
T Consensus 138 ~~e~---sl~siGLwVlaGiLtF~~ieK~f~ss~E-E~~~q~p-----------~~~~~~ac~~~~g~~c~~r~~~--q~ 200 (361)
T KOG2694|consen 138 SSEN---SLSSIGLWVLAGILTFSLIEKLFASSEE-EQHKQSP-----------SAHFLNACGGACGKVCFLREQE--QK 200 (361)
T ss_pred CCCC---chhhhhHHHHHHHHHHHHHHHHHhcchh-hccccCC-----------CcchhhHhhhccccceecchhh--cc
Confidence 1111 1223799999999999999999832111 1111000 0000000000000000000000 00
Q ss_pred CCCCCCccchhhhhhhhhhhhhccccccccccccccccccccchhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHH
Q psy11253 379 TSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGASYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLI 458 (515)
Q Consensus 379 ~~~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i 458 (515)
........+++.+|+++++..+.||..|++.+++|..+..+|.-|+.+++.|+||+|.++|.|++..++++|-.--.+..
T Consensus 201 ~~~~~~q~~kvagYLNLlAN~iDNFtHGLAVa~SFLVS~k~GiltT~aILLHEIPHEvgDFAILLRagF~rw~Aa~aQL~ 280 (361)
T KOG2694|consen 201 SKERKEQPKKVAGYLNLLANIIDNFTHGLAVASSFLVSTKFGILTTIAILLHEIPHEVGDFAILLRAGFGRWNAALAQLT 280 (361)
T ss_pred cccccccchhHHHHHHHHHHhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHhhccchhhhhHHHHHhccchhHHHHHHHH
Confidence 11111233557899999999999999999999999999999999999999999999999999999999999977666666
Q ss_pred HHHHHH
Q psy11253 459 REMFNY 464 (515)
Q Consensus 459 ~~~f~~ 464 (515)
..+|-.
T Consensus 281 TA~~Gl 286 (361)
T KOG2694|consen 281 TAAFGL 286 (361)
T ss_pred HHHHHH
Confidence 666654
No 28
>KOG0734|consensus
Probab=99.80 E-value=5.6e-20 Score=187.28 Aligned_cols=123 Identities=31% Similarity=0.471 Sum_probs=108.4
Q ss_pred hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHH
Q psy11253 389 VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNY 464 (515)
Q Consensus 389 ~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~ 464 (515)
.+..|..+.+++.+....-.+|...++|+++ | ||||||++|+++|.|.++..... +..=..|||..+++||.+|+.
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~a 391 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAA 391 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHH
Confidence 3677888999999999999999999999998 8 99999999999999999644433 466678999999999999999
Q ss_pred HHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 465 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 465 A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
|++.+||||||||||+++++|...+ .+ |+++++||||.+||||..+.
T Consensus 392 Ak~~APcIIFIDEiDavG~kR~~~~--~~-y~kqTlNQLLvEmDGF~qNe 438 (752)
T KOG0734|consen 392 AKARAPCIIFIDEIDAVGGKRNPSD--QH-YAKQTLNQLLVEMDGFKQNE 438 (752)
T ss_pred HHhcCCeEEEEechhhhcccCCccH--HH-HHHHHHHHHHHHhcCcCcCC
Confidence 9999999999999999999994433 22 88999999999999998753
No 29
>KOG0737|consensus
Probab=99.80 E-value=4e-20 Score=182.38 Aligned_cols=159 Identities=33% Similarity=0.551 Sum_probs=121.2
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc-cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
++....-.++|+||||++.+++++++.|.+|+++|++|...+ ..|++|||||||||||||++|+|+|++.+++|+.|+.
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 334445579999999999999999999999999999997544 5789999999999999999999999999999999999
Q ss_pred chhhH----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCCccCCCCC---------------cccccc
Q psy11253 162 RTIAI----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHSHDHGKLP---------------SFKYSK 207 (515)
Q Consensus 162 ~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~~~~~~~~---------------~~~~~~ 207 (515)
+.+.+ +.+| |++|+| +|+++..|. +++|+-...+.. .+..+.
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 99887 4555 688888 999999993 333333222211 234555
Q ss_pred ccCCCCccCCCCchhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHH
Q psy11253 208 QANEPYHQDVKHPITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLL 263 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~ 263 (515)
.||+|.+. |- +++ ..+--.+.++++....+.+++.+++
T Consensus 237 ATNRP~Dl----------De-Aii-------RR~p~rf~V~lP~~~qR~kILkviL 274 (386)
T KOG0737|consen 237 ATNRPFDL----------DE-AII-------RRLPRRFHVGLPDAEQRRKILKVIL 274 (386)
T ss_pred CCCCCccH----------HH-HHH-------HhCcceeeeCCCchhhHHHHHHHHh
Confidence 66666554 32 222 2222456677777778889999888
No 30
>KOG0735|consensus
Probab=99.80 E-value=4.7e-20 Score=193.24 Aligned_cols=124 Identities=31% Similarity=0.517 Sum_probs=104.6
Q ss_pred HHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHH
Q psy11253 67 TIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLAR 146 (515)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~ 146 (515)
.+.+.+..-+...+-.+...+...+.|+||||+.++|+.+++.|++|.++|.+|.+..+..+.|||||||||||||++|.
T Consensus 640 ~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~ 719 (952)
T KOG0735|consen 640 LFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLAS 719 (952)
T ss_pred HHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHH
Confidence 34444433333344455566777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEEecchhhH----------HHHH--------HHHhhc-CCcccCCCCCCCCC
Q psy11253 147 AVASQLDANFLKVVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGHSHHS 190 (515)
Q Consensus 147 ~ia~~~~~~~~~v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~ 190 (515)
++|..++..|+.|.|+++.+ |.+| ||+|.| +|+|+++|+++..+
T Consensus 720 a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG 782 (952)
T KOG0735|consen 720 AIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG 782 (952)
T ss_pred HHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC
Confidence 99999999999999999987 5556 565555 99999999976543
No 31
>KOG0741|consensus
Probab=99.79 E-value=1.4e-18 Score=177.02 Aligned_cols=140 Identities=29% Similarity=0.498 Sum_probs=106.0
Q ss_pred cccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCccc--ccCCHHHHHHH-HHHHhhcccchhhhhhcccC
Q psy11253 50 KAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSA--IGGLSEQIREL-REVIELPLLNPELFQRVGIT 126 (515)
Q Consensus 50 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d--i~g~~~~~~~l-~~~i~~~~~~~~~~~~~g~~ 126 (515)
+..|.+++.+.+.....+.+....+......++ ....|+..|++ |||+++....| ++++......|+..+++|++
T Consensus 177 ~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n--~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~ 254 (744)
T KOG0741|consen 177 RGLLLGNTQIVFEKAENSSLNLIGKSKTKPASN--SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK 254 (744)
T ss_pred eeEeecCcEEEEEeccCcceEeeccccccchhc--cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc
Confidence 345556667766665555444333311111112 23456667765 78999988875 89999999999999999999
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcce-EEecchhhH----------HHHHH-----------------HHhhcCC
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFL-KVVSRTIAI----------VLIFA-----------------VIFLHMP 178 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~-~v~~~~~~~----------~~~f~-----------------~~f~~~d 178 (515)
.-||+|||||||||||++||.|.+.+++.=- .|+++++.+ |.+|+ |+|||+|
T Consensus 255 HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 255 HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 9999999999999999999999999986544 478999886 66662 9999999
Q ss_pred cccCCCCCCCCCC
Q psy11253 179 NLCDSHGHSHHSH 191 (515)
Q Consensus 179 ~~~~~r~~~~~~~ 191 (515)
+||+.|++..+++
T Consensus 335 AICKqRGS~~g~T 347 (744)
T KOG0741|consen 335 AICKQRGSMAGST 347 (744)
T ss_pred HHHHhcCCCCCCC
Confidence 9999998766553
No 32
>KOG0734|consensus
Probab=99.77 E-value=3.4e-19 Score=181.60 Aligned_cols=102 Identities=37% Similarity=0.636 Sum_probs=94.3
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
++..+++|+|+-|.|+.|++++|.|++ ++.|..|.++|-+.||||||.||||||||++|||+|.+.+.||+..+++++.
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 345589999999999999999999988 9999999999999999999999999999999999999999999999999986
Q ss_pred H----------HHHH--------HHHhhc-CCcccCCCCCCC
Q psy11253 166 I----------VLIF--------AVIFLH-MPNLCDSHGHSH 188 (515)
Q Consensus 166 ~----------~~~f--------~~~f~~-~d~~~~~r~~~~ 188 (515)
- |.+| ||||+| +|+++.+|....
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~ 416 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD 416 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH
Confidence 4 7777 799999 999999997543
No 33
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.2e-18 Score=180.02 Aligned_cols=125 Identities=34% Similarity=0.494 Sum_probs=116.0
Q ss_pred hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhC--CeEEeeeceecccccchHHHHHHHHHH
Q psy11253 389 VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIG--DFAILIHAIVDKYIGESARLIREMFNY 464 (515)
Q Consensus 389 ~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~~~i~~~~~~s~~~g~~~~~i~~~f~~ 464 (515)
.+.++..+.+++.+.....++|+..++|+++ | ||||||.+|++++.+.+ +|.++.++.+..|+|-..+.+|.+|..
T Consensus 158 akeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~q 237 (596)
T COG0465 158 AKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQ 237 (596)
T ss_pred HHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHH
Confidence 5788999999999999999999999999998 8 99999999999999988 567777799999999999999999999
Q ss_pred HHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 465 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 465 A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|++++||||||||||++++.|..+-.+.+++..+++||||+|||||.++
T Consensus 238 Akk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 238 AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 9999999999999999999997777777888889999999999999953
No 34
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.71 E-value=1.9e-17 Score=168.10 Aligned_cols=230 Identities=26% Similarity=0.358 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhhhhhhheeeeccCCC-CCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCc
Q psy11253 225 VWGEALLSTILISLAPFLILFVVPLDTA-TGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSH 303 (515)
Q Consensus 225 ~w~~~~l~~~ii~~~~~l~~~~vp~~~~-~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~ 303 (515)
+|+++++..+++++.+.++.++++...+ +.++++++++.+|++|+|++++++|||||+++...+..... + .
T Consensus 3 ~ki~~~~~i~~~s~lg~~~P~~~~~~~~~~~~~~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~~~~~~------~--~ 74 (317)
T PF02535_consen 3 LKIVAILAIFIVSLLGGLLPLLIRKFSKNRLNKRILSLLNAFAAGVLLGTAFLHLLPEAIEALESSGCFG------E--F 74 (317)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHcCchhhcccccccccc------c--c
Confidence 4666777777777777766555554444 56789999999999999999999999999999864321100 0 0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCcccccCCCCCCCCCCCC----CCCCCCccchh----hhhh
Q psy11253 304 SIADLSVGLWVLFGILAFLCVEKFVRYVKGG-HGHSHGKPIEKKKHTSSGEDSDLSD----DEDDSDDVDYK----KTKR 374 (515)
Q Consensus 304 ~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~-~~h~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~ 374 (515)
...+++.++++++|+++++++|+++....+. |.|.|.+....+............. .+++....... ....
T Consensus 75 ~~~~~~~~~~~~~Gfl~~~~ie~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (317)
T PF02535_consen 75 GHSYPLAFLIFLVGFLLFFFIERILHSIFEHDHSHSHDHSHSHSSSELNSDEPSNSVSSSEIEDDSNSEHSDQNSHHSHS 154 (317)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccCccccccccCCccccccccccccccc
Confidence 1123778889999999999999999776442 3333332221111100000000000 00000000000 0000
Q ss_pred hcccCCCCCCccch--hhhhhhhhhhhhccccccccccccccccccccchhHHHHHHHhhhhhhCCeEEeeeceeccccc
Q psy11253 375 VKAKTSSQSNDDIA--VAGYLNLAADFTHNFTDGLAIGASYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKYIG 452 (515)
Q Consensus 375 ~~~~~~~~~~~~i~--~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g 452 (515)
.............. ..+|+.++++++|+++||+++|+++..+. +..+..+++.|++|+++++...+.....+++.-
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Hs~~eGl~ig~~~~~~~--~~~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~ 232 (317)
T PF02535_consen 155 SHSHSHHDDKSGVSQNIRALILLIALSIHSFFEGLAIGAAFSSDS--GWSLFIAIILHKIPEGFALGSILVKAGFSKRKA 232 (317)
T ss_pred ccccccccccchhhhhHHHHHHHHHHHhhcchhhhhhhcchhhhh--HHHHHHHHHHhHhHHHhhhhhhhhhhccccchh
Confidence 00000111111111 24899999999999999999999887665 788999999999999999999888888777622
Q ss_pred chHHHHHHHHHHHHh
Q psy11253 453 ESARLIREMFNYARD 467 (515)
Q Consensus 453 ~~~~~i~~~f~~A~~ 467 (515)
-.+.-+|..+..
T Consensus 233 ---~~~~~~~sl~~p 244 (317)
T PF02535_consen 233 ---LLLLLLFSLSTP 244 (317)
T ss_pred ---hHHHHHHHHHHH
Confidence 224455554443
No 35
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.8e-18 Score=181.70 Aligned_cols=108 Identities=44% Similarity=0.767 Sum_probs=97.8
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
......|+++|.|+||++..++.+++++++|+.+++.|...++.+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhH----------HHHH--------HHHhhc-CCcccCCCCCCCCC
Q psy11253 163 TIAI----------VLIF--------AVIFLH-MPNLCDSHGHSHHS 190 (515)
Q Consensus 163 ~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~ 190 (515)
++.+ +.+| |++|+| +|+++..|+.+.++
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~ 357 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG 357 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch
Confidence 9987 5555 577777 99999999866543
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.70 E-value=5.9e-18 Score=159.13 Aligned_cols=99 Identities=32% Similarity=0.530 Sum_probs=87.3
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+..++++++||.|++++|+..+-++++ +.+|+.|..| .||+||||||||||||++||++|++++.||+.|++.++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 467889999999999999987776666 8889999886 589999999999999999999999999999999999998
Q ss_pred H----------HHHH--------HHHhhc-CCcccCCCCCCC
Q psy11253 166 I----------VLIF--------AVIFLH-MPNLCDSHGHSH 188 (515)
Q Consensus 166 ~----------~~~f--------~~~f~~-~d~~~~~r~~~~ 188 (515)
+ +.+| ||+|+| +|+|+-.|.-..
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe 230 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE 230 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH
Confidence 7 3444 899999 999999886543
No 37
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.69 E-value=2.4e-17 Score=155.02 Aligned_cols=103 Identities=26% Similarity=0.430 Sum_probs=86.2
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+|--.++.+++ | ||||||++|++++.+.....+.+. .+++.|||+..++|+.+|+.|++.+|||+||||+|+|+-+
T Consensus 146 Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLd 225 (368)
T COG1223 146 FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALD 225 (368)
T ss_pred hcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhh
Confidence 44445677776 8 999999999999999997666654 7999999999999999999999999999999999999988
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|. -++-...+..+||.||++|||+..+
T Consensus 226 Rr--yQelRGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 226 RR--YQELRGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred hh--HHHhcccHHHHHHHHHHhccCcccC
Confidence 82 2222233457899999999999865
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=3.3e-17 Score=183.92 Aligned_cols=110 Identities=45% Similarity=0.786 Sum_probs=96.5
Q ss_pred cccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 78 PLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 78 ~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
|...+....+.|+++|+||+|++.+|+++++.+.+|+.++++|.++|+.+|+|+|||||||||||++|+++|++++.+|+
T Consensus 437 ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi 516 (733)
T TIGR01243 437 PSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI 516 (733)
T ss_pred ccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 33333344567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 158 KVVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 158 ~v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
.++++++.+ +.+| |++|+| +|+++..|+..
T Consensus 517 ~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~ 565 (733)
T TIGR01243 517 AVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR 565 (733)
T ss_pred EEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC
Confidence 999999876 4455 466666 99999998654
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.67 E-value=1.3e-16 Score=159.34 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=80.9
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ceecccccchHHHHHHHHHHHHhh-----CCeEEEechhh
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIVDKYIGESARLIREMFNYARDH-----QPCIIFMDEID 479 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~s~~~g~~~~~i~~~f~~A~~~-----~p~ilf~DE~D 479 (515)
.|..++.+..+ | ||||||++|++++.+++...+.++ +++++|+||+|++||.+|+.|++. +||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 45567777666 7 999999999999999997555554 799999999999999999999875 59999999999
Q ss_pred hhccCCCCCCCCchHHHHHHH-HHHHHHccCC
Q psy11253 480 AIGGRRFSEGTSADREIQRTL-MELLNQMDGF 510 (515)
Q Consensus 480 ~~~~~r~~~~~~~~~~~~~~~-~~lL~~md~~ 510 (515)
+++++|.+.+...+ ++++ .+||+.||+.
T Consensus 223 A~~g~r~~~~~tv~---~qiV~~tLLnl~D~p 251 (413)
T PLN00020 223 AGAGRFGTTQYTVN---NQMVNGTLMNIADNP 251 (413)
T ss_pred hcCCCCCCCCcchH---HHHHHHHHHHHhcCC
Confidence 99999953332222 2444 7999999974
No 40
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-16 Score=168.50 Aligned_cols=106 Identities=35% Similarity=0.623 Sum_probs=96.0
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
..+....++|.|+.|.++.|+++.|.|.. ++.|..|.++|..-|+|+||+||||||||++||++|.+.+.||+.+++|+
T Consensus 140 ~~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~ 218 (596)
T COG0465 140 YLEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 218 (596)
T ss_pred hcccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh
Confidence 33446789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred hhH----------HHHH--------HHHhhc-CCcccCCCCCCCCC
Q psy11253 164 IAI----------VLIF--------AVIFLH-MPNLCDSHGHSHHS 190 (515)
Q Consensus 164 ~~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~ 190 (515)
+.- |.+| ||+|+| +|++.+.|+.+-.+
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg 264 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 264 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC
Confidence 974 6677 799999 99999999765333
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.59 E-value=8.6e-16 Score=165.16 Aligned_cols=102 Identities=35% Similarity=0.675 Sum_probs=90.7
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
..+.|.++|+||+|++.+++++++.+.. +++++.|.++|..+|+|+|||||||||||++|+++|++++.||+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 4557899999999999999999999887 899999999999999999999999999999999999999999999999887
Q ss_pred hH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 165 AI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 165 ~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
.+ +.+| ||+|+| +|+++.+|...
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~ 166 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 166 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC
Confidence 54 4455 466666 99999998754
No 42
>KOG0740|consensus
Probab=99.58 E-value=7.2e-16 Score=157.61 Aligned_cols=106 Identities=34% Similarity=0.669 Sum_probs=94.5
Q ss_pred ccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 79 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 79 ~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.+...+.+..+++.|+|++|++..++.+.+++.+|+..+++|..+. .+++|+||+||||||||++++|||.|+++.|+.
T Consensus 138 ~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 3444456677889999999999999999999999999999999876 678999999999999999999999999999999
Q ss_pred EecchhhH----------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 159 VVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 159 v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
++++++.+ +.+| .|+|+| +|+++.+|.
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs 262 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS 262 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC
Confidence 99999998 4455 377777 999999993
No 43
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.58 E-value=1.4e-15 Score=161.20 Aligned_cols=96 Identities=22% Similarity=0.333 Sum_probs=80.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI- 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~- 166 (515)
.++++|+||||++.+|+++++.... ..+...++|+.+|+|+|||||||||||++|+++|++++.||+.++++++.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4678999999999999999876533 244567789999999999999999999999999999999999999988764
Q ss_pred ---------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 ---------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 ---------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| ||+|+| +|.++..|+.
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~ 336 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES 336 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC
Confidence 4455 577666 9999976643
No 44
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=8.3e-15 Score=152.07 Aligned_cols=135 Identities=36% Similarity=0.578 Sum_probs=108.8
Q ss_pred CCCCCCccch----hhhhhhhhhhhhccccccc-cccccccccccc-c-chhHHHHHHHhhhhhhCCeE--Eeeeceecc
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTDGL-AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDK 449 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~-alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~ 449 (515)
.+..+|.+|+ .+.++......+...++.+ .+|..++.+.++ | ||||||.++++++.+++... +..+.+.++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 4567788875 4455555555444455554 478888888887 8 99999999999999988544 334578899
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|+|++++.++.+|+.|+..+||||||||+|+++.+|.....+.+..+.+++++||++||++...
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999996655566667789999999999998764
No 45
>KOG0740|consensus
Probab=99.55 E-value=7.3e-15 Score=150.27 Aligned_cols=135 Identities=32% Similarity=0.379 Sum_probs=101.6
Q ss_pred ccCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhC--CeEEeeeceec
Q psy11253 377 AKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIG--DFAILIHAIVD 448 (515)
Q Consensus 377 ~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~~~i~~~~~~s 448 (515)
.....+.|++++ ....+...+.++---+|++--=-+++.+.++ | ||+|||+++|+||.|.+ +|.+..+++.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 344556788775 2333444444444444444322334455554 7 99999999999999988 57777779999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
||+|++|+.|+.+|+.||+.+|+|+||||+|+++..|+......+ ++.-+++|.++++....+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~s---rr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESS---RRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccc---hhhhhHHHhhhccccCCC
Confidence 999999999999999999999999999999999999955444443 467779999999987654
No 46
>KOG0737|consensus
Probab=99.54 E-value=1.3e-14 Score=143.57 Aligned_cols=131 Identities=27% Similarity=0.366 Sum_probs=100.0
Q ss_pred CCCCccch----hhhhhhhhhhhhcccccccccc--ccccccccc-c-chhHHHHHHHhhhhhhCCeE--Eeeeceeccc
Q psy11253 381 SQSNDDIA----VAGYLNLAADFTHNFTDGLAIG--ASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDKY 450 (515)
Q Consensus 381 ~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg--~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~~ 450 (515)
.++|.+|+ +..-+......+-..++-++.| ..++.|+++ | ||||||++|++++.+.+... +..+.+.+||
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 35666775 2333334444444445544433 235677776 8 99999999999999988544 4555899999
Q ss_pred ccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 451 IGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 451 ~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
.||++|.++.+|..|.+.+||||||||+|++++.|. ++.++.....-|+|+..=||+.+..
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~ 228 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKD 228 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCC
Confidence 999999999999999999999999999999999993 4445556677789999999998754
No 47
>KOG0741|consensus
Probab=99.53 E-value=3.8e-15 Score=152.17 Aligned_cols=106 Identities=31% Similarity=0.421 Sum_probs=86.9
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCC---eEEeeeceecccccchHHHHHHHHHHHHhhCC--------eEEEe
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGD---FAILIHAIVDKYIGESARLIREMFNYARDHQP--------CIIFM 475 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~---~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p--------~ilf~ 475 (515)
+|....+|.++ | ||||||.+|+.|..=+.. =.++....++|||||||+|||++|+-|++.+. -||+|
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 77788888887 8 999999999999998874 45556689999999999999999999987533 39999
Q ss_pred chhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCCC
Q psy11253 476 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515 (515)
Q Consensus 476 DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~~ 515 (515)
||||+||.+|++...+ +....++|||||+.|||.+...+
T Consensus 331 DEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred hhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhc
Confidence 9999999999543321 22334899999999999987543
No 48
>CHL00176 ftsH cell division protein; Validated
Probab=99.51 E-value=1.3e-14 Score=158.35 Aligned_cols=101 Identities=36% Similarity=0.646 Sum_probs=88.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..+.++|+||+|++++++++.+.+.. +++++.|..+|...|+|+|||||||||||++|+++|++++.||+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 44678999999999999999998877 89999999999999999999999999999999999999999999999988754
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCCCC
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGHSH 188 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~~~ 188 (515)
+.+| ||+|+| +|+++..|+...
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 295 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGI 295 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCC
Confidence 3345 466666 999999886543
No 49
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.50 E-value=2.7e-14 Score=153.63 Aligned_cols=134 Identities=31% Similarity=0.429 Sum_probs=105.3
Q ss_pred CCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEe--eeceeccccc
Q psy11253 381 SQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAIL--IHAIVDKYIG 452 (515)
Q Consensus 381 ~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~--~~~~~s~~~g 452 (515)
..+|+++. .+.++..+..++.+....-.+|..++.+.++ | ||||||.++++++.+++...+. .+...++|+|
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 130 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 130 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhc
Confidence 34555553 3445555555555544445577888888777 8 9999999999999998854444 4467899999
Q ss_pred chHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 453 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 453 ~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+++++++.+|+.|+..+||||||||||+++.+|..+..+.+.+..+++|+||++||++.+.+
T Consensus 131 ~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 131 VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999966544555667789999999999987643
No 50
>PRK04201 zinc transporter ZupT; Provisional
Probab=99.49 E-value=1.1e-14 Score=143.64 Aligned_cols=153 Identities=23% Similarity=0.275 Sum_probs=108.4
Q ss_pred CCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11253 252 ATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYV 331 (515)
Q Consensus 252 ~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~ 331 (515)
++..++++.++++||+|+|++++++||+||+++..+.. ...........+++++|+++++++|++++..
T Consensus 29 ~~~~~~~l~~~lafAaGvml~~~~~~LiPea~~~~~~~-----------~~~~~~~~~~~~~~~~G~ll~~~ld~~~~~~ 97 (265)
T PRK04201 29 KKPNNRFLSFSLGFAAGVMLYVSFMEILPKALAALTEA-----------YGEGMGPWLGYGAFFGGILGIFLIDRLVPHE 97 (265)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------ccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34677899999999999999999999999999853210 0001133455677899999999999998521
Q ss_pred hCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCccchhhhhhhhhhhhhccccccccccc
Q psy11253 332 KGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGA 411 (515)
Q Consensus 332 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~ 411 (515)
|.|.+....+. . . . ..........+|++.+++.+||++||+++|+
T Consensus 98 ---~~~~~~~~~~~--~---------------~----~-----------~~~~~~~~~~~~~~~~a~~lH~~~eGlalg~ 142 (265)
T PRK04201 98 ---NPHELMQKEEM--E---------------F----Q-----------QPLPKSLKRTGILTALAISIHNFPEGIATFV 142 (265)
T ss_pred ---Ccccccccccc--c---------------c----c-----------ccchHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 11110000000 0 0 0 0000112346899999999999999999999
Q ss_pred cccccccccchhHHHHHHHhhhhhhCCeEEeeeceeccc
Q psy11253 412 SYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKY 450 (515)
Q Consensus 412 ~~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~ 450 (515)
++..+...|..+..++++|++|+++++...+..+..+++
T Consensus 143 ~~~~~~~~g~~~~~aI~~H~iPeg~a~~~~l~~~~~s~~ 181 (265)
T PRK04201 143 AALSNPELGFPIALAIAIHNIPEGIAVAVPVYYATGSKK 181 (265)
T ss_pred hhhcchhhHHHHHHHHHHhcCcHHHHHHHHHHHccCcHH
Confidence 998888889999999999999999998776666555554
No 51
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.48 E-value=6.7e-14 Score=145.73 Aligned_cols=135 Identities=40% Similarity=0.631 Sum_probs=104.3
Q ss_pred CCCCCccch----hhhhhhhhhhhhccccccc-cccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceeccc
Q psy11253 380 SSQSNDDIA----VAGYLNLAADFTHNFTDGL-AIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKY 450 (515)
Q Consensus 380 ~~~~~~~i~----~~~~l~~~~~~lh~~~dg~-alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~ 450 (515)
+...|+++. ....+......+...++-+ .+|...+.+.++ | ||||||.++++++.+++. +.+..+.+.++|
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 445565554 2233333333333344433 478888888887 8 999999999999999884 444555788999
Q ss_pred ccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 451 IGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 451 ~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
.|++++.++.+|+.|+..+||||||||+|+++.+|.....+.+..+.+.+++||++||++...+
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 9999999999999999999999999999999999976655556677889999999999987543
No 52
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.46 E-value=1.1e-13 Score=146.57 Aligned_cols=134 Identities=25% Similarity=0.359 Sum_probs=98.5
Q ss_pred CCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC----------eE-
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD----------FA- 440 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~----------~~- 440 (515)
.+..+|++|+ ....+......+...++-+. +|..++.+.++ | ||||||.++++++.+++. +.
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 3455666664 22233333333344455554 78888888877 8 999999999999999752 12
Q ss_pred -EeeeceecccccchHHHHHHHHHHHHhh----CCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 441 -ILIHAIVDKYIGESARLIREMFNYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 441 -i~~~~~~s~~~g~~~~~i~~~f~~A~~~----~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+....++++|+|+++++++.+|+.|+.. .||||||||+|+++++|+.+.++. ..++++++||++||++...+
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d--~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSD--VETTVVPQLLSELDGVESLD 332 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccch--HHHHHHHHHHHHhcccccCC
Confidence 2234688999999999999999999875 699999999999999995443332 33578999999999987643
No 53
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.46 E-value=8.6e-14 Score=147.56 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=85.1
Q ss_pred cccccccccccc-c-chhHHHHHHHhhhhhhCCeEEe--eeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 408 AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAIL--IHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 408 alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~--~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
..|...++|.++ | ||||||.+|++++.+++...+. .+.++++|+|+++++++++|+.|+..+||||||||||.++.
T Consensus 253 ~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 253 NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332 (489)
T ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc
Confidence 467788888887 8 9999999999999999964444 45789999999999999999999999999999999999998
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 484 RRFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 484 ~r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
+|.... ......+++++||++|+.-
T Consensus 333 ~~~~~~--d~~~~~rvl~~lL~~l~~~ 357 (489)
T CHL00195 333 NSESKG--DSGTTNRVLATFITWLSEK 357 (489)
T ss_pred cccCCC--CchHHHHHHHHHHHHHhcC
Confidence 764322 2234568999999999864
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.46 E-value=1e-13 Score=144.92 Aligned_cols=106 Identities=40% Similarity=0.721 Sum_probs=91.5
Q ss_pred cccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 408 AIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 408 alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
.+|...+.+.++ | ||||||.++++++.+++. +.+..+.++++|+|++++.++.+|+.|+..+||||||||||+++.
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 367777777776 8 999999999999999884 444556788999999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 484 RRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 484 ~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
+|....++.+..+.+++++||++||++...
T Consensus 291 kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 291 KRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 997666666677788899999999998654
No 55
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.43 E-value=7.1e-14 Score=139.85 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=73.5
Q ss_pred CCCCcccc-cCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-
Q psy11253 89 GDITYSAI-GGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI- 166 (515)
Q Consensus 89 ~~~~~~di-~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~- 166 (515)
.+.+|+++ ||+--.+.-+..++.... +..+...|+++|++++||||||||||++|+++|++++++|+.++++++.+
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34566676 776655555555443322 22333478999999999999999999999999999999999999999986
Q ss_pred ---------HHHH-------------HHHhhc-CCcccCCCCC
Q psy11253 167 ---------VLIF-------------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 ---------~~~f-------------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| |++|+| +|+++..|+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~ 230 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT 230 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC
Confidence 5555 466666 9999999963
No 56
>CHL00176 ftsH cell division protein; Validated
Probab=99.40 E-value=3.5e-13 Score=147.26 Aligned_cols=124 Identities=30% Similarity=0.424 Sum_probs=102.6
Q ss_pred hhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEe--eeceecccccchHHHHHHHHHHH
Q psy11253 390 AGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAIL--IHAIVDKYIGESARLIREMFNYA 465 (515)
Q Consensus 390 ~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~--~~~~~s~~~g~~~~~i~~~f~~A 465 (515)
..++..+..++.+....-.+|...+.+.++ | ||||||.++++++.+++...+. ++.....|+|.+.+.++.+|+.|
T Consensus 192 k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A 271 (638)
T CHL00176 192 KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA 271 (638)
T ss_pred HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH
Confidence 455555666666655555678888888887 8 9999999999999998854444 45678889999999999999999
Q ss_pred HhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 466 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 466 ~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
+..+||||||||+|+++.+|+.+..+.+.+..+++|+||.+||++...
T Consensus 272 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 272 KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 999999999999999999997665566667788999999999998754
No 57
>KOG0732|consensus
Probab=99.37 E-value=3.9e-13 Score=149.22 Aligned_cols=100 Identities=37% Similarity=0.694 Sum_probs=88.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcceEEec
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVS 161 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~ 161 (515)
-...+.|++|||++..++.++|.|-+|+.+|+.|..++|.||+|+|||||||||||++|+++|..+. ..|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3457899999999999999999999999999999999999999999999999999999999999984 66777788
Q ss_pred chhhH----------HHHH--------H-HHhhcCCcccCCCCC
Q psy11253 162 RTIAI----------VLIF--------A-VIFLHMPNLCDSHGH 186 (515)
Q Consensus 162 ~~~~~----------~~~f--------~-~~f~~~d~~~~~r~~ 186 (515)
.+..+ +.+| . ++|+++|-+++.|..
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs 381 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS 381 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc
Confidence 88877 4455 1 555569999999964
No 58
>KOG0732|consensus
Probab=99.36 E-value=7.5e-13 Score=147.02 Aligned_cols=133 Identities=27% Similarity=0.325 Sum_probs=108.9
Q ss_pred CCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhC-------CeEEeeec
Q psy11253 380 SSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIG-------DFAILIHA 445 (515)
Q Consensus 380 ~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~-------~~~i~~~~ 445 (515)
..+.|++|+ +...|..+.+.+--.++-+. ++..++.|+++ | ||||||..+++++..+. +|.--..+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 345677876 44555556666667777665 88889999998 8 99999999999998876 34444458
Q ss_pred eecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCCC
Q psy11253 446 IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515 (515)
Q Consensus 446 ~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~~ 515 (515)
..++|+||.|++++.+|+.|++.+|+||||||||.+++.|++..... ...++.+||.-|||++++|+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqi---h~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQI---HASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHh---hhhHHHHHHHhccCCCCCCc
Confidence 89999999999999999999999999999999999999995554333 34789999999999999985
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.29 E-value=4.3e-12 Score=131.44 Aligned_cols=106 Identities=46% Similarity=0.733 Sum_probs=90.6
Q ss_pred cccccccccccc-c-chhHHHHHHHhhhhhhCCeE--EeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 408 AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 408 alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
.+|...+.+.++ | ||||||.++++++.+++... +....+..+|.|++++.++.+|+.|+..+||||||||+|+++.
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 477788888777 8 99999999999999988533 3444678899999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 484 RRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 484 ~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
+|.....+.+.+..+.++++|.+||++...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 886665566667778899999999998654
No 60
>KOG0743|consensus
Probab=99.28 E-value=4e-12 Score=129.49 Aligned_cols=99 Identities=19% Similarity=0.391 Sum_probs=86.7
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI---- 166 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~---- 166 (515)
-+|+-++.-.+.|++|.+.+....+.++.|++.|..+.||.|||||||||||++..|+|+.++..++.+..+++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dL 277 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDL 277 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred HHHH------HHHhhc-CCcccCCCCCCCC
Q psy11253 167 VLIF------AVIFLH-MPNLCDSHGHSHH 189 (515)
Q Consensus 167 ~~~f------~~~f~~-~d~~~~~r~~~~~ 189 (515)
+.+- .|+.+| +|+=+..|+....
T Consensus 278 r~LL~~t~~kSIivIEDIDcs~~l~~~~~~ 307 (457)
T KOG0743|consen 278 RHLLLATPNKSILLIEDIDCSFDLRERRKK 307 (457)
T ss_pred HHHHHhCCCCcEEEEeeccccccccccccc
Confidence 3333 355555 9999887765443
No 61
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.28 E-value=6.6e-12 Score=138.62 Aligned_cols=106 Identities=34% Similarity=0.493 Sum_probs=90.3
Q ss_pred cccccccccccc-c-chhHHHHHHHhhhhhhCCeE--EeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 408 AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 408 alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
.+|...+.+.++ | ||||||.+++.++.+++... +..+...+.|+|.++++++.+|+.|+..+||||||||+|+++.
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 356666777776 8 99999999999999988544 4444678899999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 484 RRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 484 ~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
+|+.+..+.+.+..+++|+||.+||++.+.
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 997655555667778999999999998764
No 62
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.28 E-value=3.2e-12 Score=148.03 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=82.9
Q ss_pred hhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceeccc-----------------------
Q psy11253 398 DFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKY----------------------- 450 (515)
Q Consensus 398 ~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~----------------------- 450 (515)
.-.|+.+--+.+|+.+++|+++ | ||||||.+|+++|.+.++..+.+ +.++++|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 3356677677899999999998 8 99999999999999998655544 4666544
Q ss_pred ------------------ccchHH--HHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 451 ------------------IGESAR--LIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 451 ------------------~g~~~~--~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
+|+++. +|+.+|+.||+.+||||||||||+++.+. + + ...+++||++|||.
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s--~--~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----S--N--YLSLGLLVNSLSRD 1764 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----c--c--eehHHHHHHHhccc
Confidence 233444 49999999999999999999999998652 1 1 13589999999987
Q ss_pred C
Q psy11253 511 D 511 (515)
Q Consensus 511 ~ 511 (515)
.
T Consensus 1765 ~ 1765 (2281)
T CHL00206 1765 C 1765 (2281)
T ss_pred c
Confidence 4
No 63
>KOG0744|consensus
Probab=99.25 E-value=2.6e-12 Score=124.78 Aligned_cols=96 Identities=21% Similarity=0.374 Sum_probs=79.3
Q ss_pred c-chhHHHHHHHhhhhhhC-----------CeEEeeeceecccccchHHHHHHHHHHHHhhC-----CeEEEechhhhhc
Q psy11253 420 G-IVTTITILFHEIPHEIG-----------DFAILIHAIVDKYIGESARLIREMFNYARDHQ-----PCIIFMDEIDAIG 482 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-----------~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~-----p~ilf~DE~D~~~ 482 (515)
| ||||||.+|+++++.+. +.-+++++++|||.+||.|++.++|+...+.. -..++|||+++++
T Consensus 184 GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa 263 (423)
T KOG0744|consen 184 GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLA 263 (423)
T ss_pred CCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHH
Confidence 7 99999999999999876 25566779999999999999999999877652 2477899999999
Q ss_pred cCCC-CCCCCchHHHHHHHHHHHHHccCCCCCCC
Q psy11253 483 GRRF-SEGTSADREIQRTLMELLNQMDGFDSLGQ 515 (515)
Q Consensus 483 ~~r~-~~~~~~~~~~~~~~~~lL~~md~~~~~~~ 515 (515)
..|. ...++.....-|+||.+|+|||++....|
T Consensus 264 ~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N 297 (423)
T KOG0744|consen 264 AARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN 297 (423)
T ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC
Confidence 9993 33344455667999999999999887653
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.25 E-value=5.8e-11 Score=133.39 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=65.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
.+-.++++.|.++.++.+.+.+.. ...++++||||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 345678899999888877766533 235689999999999999999999998 778999
Q ss_pred EecchhhH------------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 159 VVSRTIAI------------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 159 v~~~~~~~------------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
++.+.+.. +.+| +|+|+| ++.++..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~ 291 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA 291 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC
Confidence 99877763 2333 377777 999997764
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.8e-13 Score=141.60 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=94.2
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcEEEEeccccccccCCCC-------------------CEEEEc
Q psy11253 2 TTPVVDEVRHKTLQDYRKKLTEHAEVEGRLRETTNGPRYVVGCRRQLDKAKLKSG-------------------TRVALD 62 (515)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~v~~~ 62 (515)
...+++.+|+++|+++.|.|+++++...+-+ ..+.+++..+++..+... ..-.+-
T Consensus 219 k~~meK~QREyyL~EQlKaIqkELG~~~d~~------~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~Vi 292 (782)
T COG0466 219 KEQMEKSQREYYLREQLKAIQKELGEDDDDK------DEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVI 292 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccch------hHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 4567889999999999999999888532111 112233333333322221 122233
Q ss_pred cchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC--ceeecCCCCh
Q psy11253 63 MTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTG 140 (515)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g--iLl~GPpGtG 140 (515)
+....++-.+|+...... ...+.....+-=.|..|++++|++|.|++......+ .-+| +||+||||+|
T Consensus 293 RnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVG 362 (782)
T COG0466 293 RNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVG 362 (782)
T ss_pred HHHHHHHHhCCCccccch-hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCC
Confidence 344444445554432221 111222223333789999999999999997632221 1233 6789999999
Q ss_pred hhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 141 KTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 141 KT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
||++++.||+.++.+|++++...+..
T Consensus 363 KTSLgkSIA~al~RkfvR~sLGGvrD 388 (782)
T COG0466 363 KTSLGKSIAKALGRKFVRISLGGVRD 388 (782)
T ss_pred chhHHHHHHHHhCCCEEEEecCcccc
Confidence 99999999999999999999877753
No 66
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.17 E-value=2e-11 Score=134.81 Aligned_cols=100 Identities=34% Similarity=0.618 Sum_probs=86.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.....+|.|++|.+..++++.+.+.+ +..++.+..++...|+|+||+||||||||++|+++|++++.||+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34567899999999999999999987 66788888888899999999999999999999999999999999999988764
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
+.+| |++|+| +|+++..|+..
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC
Confidence 3344 466666 99999988754
No 67
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.17 E-value=4.6e-12 Score=143.03 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=88.7
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcEEEEeccccccccCCCCCE-------------------EEE
Q psy11253 1 MTTPVVDEVRHKTLQDYRKKLTEHAEVEGRLRETTNGPRYVVGCRRQLDKAKLKSGTR-------------------VAL 61 (515)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------v~~ 61 (515)
|++.+++.+|+++|+++.+.|+++++-..+ ..+.+.+++.++...++.+..+ -.+
T Consensus 215 v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~------~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 288 (775)
T TIGR00763 215 VEEKMEKTQREYYLREQLKAIKKELGIEKD------DKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTV 288 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHH
Confidence 356778899999999999999888773111 1111233344443333322211 111
Q ss_pred ccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChh
Q psy11253 62 DMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGK 141 (515)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGK 141 (515)
.+.....+..+|....... .......+..=-+|+.|++++++.|.+++..+.... -..+..+||||||||||
T Consensus 289 ~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GK 360 (775)
T TIGR00763 289 TRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGK 360 (775)
T ss_pred HHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCH
Confidence 2222333333443221111 111111111222568999999999999886542211 11223699999999999
Q ss_pred hHHHHHHHHHhhhcceEEecchh
Q psy11253 142 TLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 142 T~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
|++|+++|+.++.+|++++.+.+
T Consensus 361 T~lAk~iA~~l~~~~~~i~~~~~ 383 (775)
T TIGR00763 361 TSLGKSIAKALNRKFVRFSLGGV 383 (775)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCc
Confidence 99999999999999999976543
No 68
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.4e-11 Score=121.02 Aligned_cols=146 Identities=27% Similarity=0.381 Sum_probs=108.4
Q ss_pred CCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11253 253 TGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVK 332 (515)
Q Consensus 253 ~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~ 332 (515)
+..++++..+++|++|+|+..++++++|++++...... ............++.|++.++.+|++++
T Consensus 34 ~~~~~~~~~~~gFa~Gvm~~as~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~G~~~~~~~d~l~~--- 99 (266)
T COG0428 34 KVSPRVLDILLGFAAGVMLAASFTSLLPPAIEASGVLG-----------DSTHEFLPALAGFLLGVLFIFLLDRLVP--- 99 (266)
T ss_pred ccchHHHHHHHhhhhhHHHHHHHHHhcchHHhhhcccc-----------ccchhhHHHHHHHHHHHHHHHHHHHcCC---
Confidence 66789999999999999999999999999998753211 0001224455568899999999999986
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCccchhhhhhhhhhhhhcccccccccccc
Q psy11253 333 GGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGAS 412 (515)
Q Consensus 333 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~~ 412 (515)
|.|........... +.+ -...+|++.+++.+|||+||+++|++
T Consensus 100 --h~h~~~~~~~~~~~-----------------------------~~~------~~~~~~l~~lai~iHnfpEGlai~va 142 (266)
T COG0428 100 --HEHEGKSVEGLEGL-----------------------------RKP------NLRRGFLLALAISLHNFPEGLAIGVA 142 (266)
T ss_pred --ccCCCCCccccccc-----------------------------cCc------chhHHHHHHHHHHHhccchhHHHHHH
Confidence 12211000000000 000 01278999999999999999999999
Q ss_pred ccccccccchhHHHHHHHhhhhhhCCeEEeeeceecc
Q psy11253 413 YLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDK 449 (515)
Q Consensus 413 ~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~ 449 (515)
+..+...|..++.++..|++|+++++..++.....++
T Consensus 143 ~~~~~~~gi~~alaI~ihnipEG~av~~pL~~~~~s~ 179 (266)
T COG0428 143 FLSNPSLGIALALAIAIHNIPEGLAVALPLAGAGRSR 179 (266)
T ss_pred HhccchHHHHHHHHHHHhccccHHHHHHHHHhcCCch
Confidence 9999889999999999999999999888887766555
No 69
>KOG0742|consensus
Probab=99.14 E-value=2.7e-11 Score=120.92 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI- 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~- 166 (515)
.+.-.+++|+......+.|++...- -.+.+. .-.|.++||||||||||||++||-||...|+.+-.+.+.|+..
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~a-TaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIA-TANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHH-hccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 3455577888777777777665432 111111 2246788999999999999999999999999999999999975
Q ss_pred --------HHHH---------HHHhhc-CCcccCCCCCCCCCCCCCc--------cCCCCCccccccccCCCCccCCCCc
Q psy11253 167 --------VLIF---------AVIFLH-MPNLCDSHGHSHHSHEHSH--------DHGKLPSFKYSKQANEPYHQDVKHP 220 (515)
Q Consensus 167 --------~~~f---------~~~f~~-~d~~~~~r~~~~~~~e~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (515)
+.+| .++|+| +|++++.|+...++..... .+.-...|+.-..+|.+..-|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlD---- 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLD---- 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchh----
Confidence 6777 378888 9999999998776532221 111112234444455554332
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHH
Q psy11253 221 ITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLL 263 (515)
Q Consensus 221 ~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~ 263 (515)
|. .-+.+--++.+|++....+.+++.+.+
T Consensus 500 -----sA---------V~DRide~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742|consen 500 -----SA---------VNDRIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred -----HH---------HHhhhhheeecCCCChHHHHHHHHHHH
Confidence 32 112333455678887777777775544
No 70
>CHL00181 cbbX CbbX; Provisional
Probab=99.12 E-value=4e-11 Score=119.71 Aligned_cols=91 Identities=29% Similarity=0.433 Sum_probs=72.0
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCC-C--ceeecCCCChhhHHHHHHHHHhh-------hcceEEecc
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK-G--CLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSR 162 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~-g--iLl~GPpGtGKT~~a~~ia~~~~-------~~~~~v~~~ 162 (515)
+.+++|++++|++|++.+.+ +..+++..+.|+.+++ + +||+||||||||++|+++|+.+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34899999999999999988 5556777888887654 3 89999999999999999999874 368999988
Q ss_pred hhhHHH----------HH-----HHHhhc-CCcccCCC
Q psy11253 163 TIAIVL----------IF-----AVIFLH-MPNLCDSH 184 (515)
Q Consensus 163 ~~~~~~----------~f-----~~~f~~-~d~~~~~r 184 (515)
++.+.. ++ .++|+| +|.++..+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~ 138 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPD 138 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCC
Confidence 886522 23 356666 99998654
No 71
>KOG2004|consensus
Probab=99.10 E-value=3.8e-11 Score=127.33 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=102.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcEEEEecc---------ccccc-----cCCC-CCEEEEccchHHH
Q psy11253 4 PVVDEVRHKTLQDYRKKLTEHAEVEGRLRETTNGPRYVVGCRR---------QLDKA-----KLKS-GTRVALDMTTLTI 68 (515)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-----~l~~-~~~v~~~~~~~~~ 68 (515)
......|+++|+++.+.|+.+++++.+-+. .-...|..++.. .++.+ .|.+ .....+.+..+.+
T Consensus 308 k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd-~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdw 386 (906)
T KOG2004|consen 308 KIKQDHREYLLREQLKAIKKELGIEKDDKD-ALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDW 386 (906)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCccchh-hHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHH
Confidence 344567999999999999998887755542 111111111111 11111 2222 2455566777888
Q ss_pred HhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHH
Q psy11253 69 MRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAV 148 (515)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~i 148 (515)
+..+|....+.- ++.+.....+-=+|..|++++|++|.|+|..-.. .|-...+=++|+||||+|||+++|.|
T Consensus 387 lt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSI 458 (906)
T KOG2004|consen 387 LTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSI 458 (906)
T ss_pred HHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHH
Confidence 889998754432 4445555556668999999999999999976211 11122334789999999999999999
Q ss_pred HHHhhhcceEEecchhh
Q psy11253 149 ASQLDANFLKVVSRTIA 165 (515)
Q Consensus 149 a~~~~~~~~~v~~~~~~ 165 (515)
|..+|..|++++-..+.
T Consensus 459 A~ALnRkFfRfSvGG~t 475 (906)
T KOG2004|consen 459 ARALNRKFFRFSVGGMT 475 (906)
T ss_pred HHHhCCceEEEeccccc
Confidence 99999999999876654
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.10 E-value=4.7e-11 Score=138.60 Aligned_cols=52 Identities=23% Similarity=0.428 Sum_probs=47.4
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
...+....++|+.+||||||+||||||||++|||+|.++++||+.|+++++.
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 3445667889999999999999999999999999999999999999998876
No 73
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=99.09 E-value=2e-10 Score=116.43 Aligned_cols=179 Identities=19% Similarity=0.205 Sum_probs=104.5
Q ss_pred ChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh-C
Q psy11253 255 NENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVK-G 333 (515)
Q Consensus 255 ~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~-~ 333 (515)
+.+.+.++-+||+|++|+++|+||||++++...+..- .......+++.++.+++|+++++++|.+..... +
T Consensus 49 ~~~~~~~~k~FagGVfLATafvHLLp~a~e~l~~~cl--------~~~~~~~yP~~~~i~~~g~~l~~~iE~~~~~~~~~ 120 (324)
T TIGR00820 49 EGNFFFVAKAFAAGVILATGFMHVLPEAFEMLSSPCL--------ESTPWGKFPFAGFIAMISAILTLLVDLFATSYYER 120 (324)
T ss_pred CcchhHHHHHhccceeeeeeeeeeccHHHHhhcCccc--------CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999997632110 000112467888899999999999998876442 2
Q ss_pred CCCCCC-CCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCccchhhhhhhhhhhhhcccccccccccc
Q psy11253 334 GHGHSH-GKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGAS 412 (515)
Q Consensus 334 ~~~h~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~~ 412 (515)
.+.+.+ .+...+. . ......... ..+. .+..+. .........++.......++..+++.+||++||+++|++
T Consensus 121 ~~~~~~~~~~~~~~-~--~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gl~~Hs~~eGlalG~~ 193 (324)
T TIGR00820 121 KHGKGDHGSKEIKV-G--DGEEGTAGG--TKHG-HEYYED-HVHTNSEVVQLLRQRVVAQVLELGIIVHSVVIGLSLGAS 193 (324)
T ss_pred cccCCCCCcccccc-c--ccccCCCCC--CCCC-cccccc-ccccccchhhHHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 111111 1100000 0 000000000 0000 000000 000000000001112357888899999999999999998
Q ss_pred ccccccccchhHHHHHHHhhhhhhCCeEEeeeceeccc
Q psy11253 413 YLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKY 450 (515)
Q Consensus 413 ~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~ 450 (515)
...+. ...+..+++.|++|+++++...+....++++
T Consensus 194 ~~~~~--~~~l~~Ai~~Hk~~eg~alg~~l~~~~~~~~ 229 (324)
T TIGR00820 194 QSPDT--IKPLIAALSFHQFFEGLGLGGCISQAEFKCK 229 (324)
T ss_pred cCcch--HHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Confidence 64332 3577789999999999998777776666553
No 74
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.07 E-value=4.3e-10 Score=98.43 Aligned_cols=92 Identities=32% Similarity=0.450 Sum_probs=77.1
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHHHHhhC-CeEEEechhhhhccCCCCCCCCchH
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADR 494 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~-p~ilf~DE~D~~~~~r~~~~~~~~~ 494 (515)
.| ||+|||.+++.+++.++...+.+ ....+.+.+++++.++.+|+.|+..+ ||||||||+|.++.++ .. ....
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~--~~~~ 80 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QP--SSSS 80 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-ST--SSSH
T ss_pred ECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-cc--cccc
Confidence 47 99999999999999999655444 46778899999999999999999998 9999999999999888 22 2334
Q ss_pred HHHHHHHHHHHHccCCCCC
Q psy11253 495 EIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 495 ~~~~~~~~lL~~md~~~~~ 513 (515)
....++++|+..|+.....
T Consensus 81 ~~~~~~~~L~~~l~~~~~~ 99 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK 99 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT
T ss_pred ccccccceeeecccccccc
Confidence 4467889999999987763
No 75
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.05 E-value=1.8e-10 Score=115.01 Aligned_cols=89 Identities=29% Similarity=0.405 Sum_probs=71.3
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCC---CCCceeecCCCChhhHHHHHHHHHhh-------hcceEEecchh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITP---PKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSRTI 164 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~~giLl~GPpGtGKT~~a~~ia~~~~-------~~~~~v~~~~~ 164 (515)
+++|++++|++|.+.+.+ +..++.+.+.|+.+ ..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999988 67788888889875 34799999999999999999998874 27999998887
Q ss_pred hH----------HHHH-----HHHhhc-CCcccCCC
Q psy11253 165 AI----------VLIF-----AVIFLH-MPNLCDSH 184 (515)
Q Consensus 165 ~~----------~~~f-----~~~f~~-~d~~~~~r 184 (515)
.+ +.+| +++|+| ++.+...+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCC
Confidence 64 2233 355555 99887544
No 76
>PLN02159 Fe(2+) transport protein
Probab=99.04 E-value=8.7e-11 Score=118.83 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=103.1
Q ss_pred CChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh-
Q psy11253 254 GNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVK- 332 (515)
Q Consensus 254 ~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~- 332 (515)
.+.+.+.++.+||+|++++++|+|||||+++..++..- .. .....+++.++.+++|+++++++|.+.....
T Consensus 76 ~~~~~~~~~~~FagGV~Lat~flHLLp~a~e~l~~~cl------~~--~~~~~yP~~~~i~~~g~~l~~liE~~~~~~~~ 147 (337)
T PLN02159 76 PDGNIFTIVKCFASGIILGTGFMHVLPDSFEMLSSKCL------ED--NPWHKFPFAGFVAMLSGLVTLAIDSMATSLYT 147 (337)
T ss_pred CchhHHHHHHHHhhhHhHHHHHHHhhhHHHHhhhchhh------cC--CCcccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999997642110 00 0012467888899999999999999876431
Q ss_pred CCCCC----CCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCccchhhhhhhhhhhhhcccccccc
Q psy11253 333 GGHGH----SHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLA 408 (515)
Q Consensus 333 ~~~~h----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~lh~~~dg~a 408 (515)
..+.+ .|++.+... ......++ + +..... -....|+..+++.+||+++|++
T Consensus 148 ~~~~~~~~~~h~h~~~~~---------~~~~~~~~----~--~~~~~r----------~~~~a~~l~~gl~lHS~~eGla 202 (337)
T PLN02159 148 SKNSVGPMPDHGHSHGHG---------VVLKTKDD----G--NAQLLR----------YRVIAMVLELGIIVHSVVIGLS 202 (337)
T ss_pred hccCCCcccccCcccccc---------cccccccc----c--chhHHH----------HHHHHHHHHHHHHHHHHHhchh
Confidence 11110 000000000 00000000 0 000000 0135699999999999999999
Q ss_pred ccccccccccccchhHHHHHHHhhhhhhCCeEEeeeceeccc
Q psy11253 409 IGASYLAGKHVGIVTTITILFHEIPHEIGDFAILIHAIVDKY 450 (515)
Q Consensus 409 lg~~~~~~~~~G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~ 450 (515)
+|+++..+...| ...++..|++|+++++...+....++++
T Consensus 203 lG~~~~~~~~~~--l~~AI~~Hk~~eg~aLg~~L~~~~~~~~ 242 (337)
T PLN02159 203 LGATNDTCTIKG--LIAALCFHQMFEGMGLGGCILQAEYTNV 242 (337)
T ss_pred hhcCCCchhHHH--HHHHHHHHhhHHHHHHHHHHHhccCcHH
Confidence 999876554444 4458899999999998777766666553
No 77
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.04 E-value=2.6e-10 Score=107.49 Aligned_cols=71 Identities=28% Similarity=0.345 Sum_probs=49.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..+.+++|+.|++..++.++-++..-... -.+...+|||||||||||++|+.||++++.+|...+++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 35569999999999999877666431100 123456999999999999999999999999999999977653
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.00 E-value=2.6e-10 Score=112.65 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=66.2
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCC---CceeecCCCChhhHHHHHHHHHhh-------hcceEEecc
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK---GCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSR 162 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~---giLl~GPpGtGKT~~a~~ia~~~~-------~~~~~v~~~ 162 (515)
+++++|++.+|+.|++.+.++... ....+.|+.++. +++||||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 568999999999999999886554 333345665433 589999999999999999998752 367888887
Q ss_pred hhhH----------HHHH-----HHHhhc-CCccc
Q psy11253 163 TIAI----------VLIF-----AVIFLH-MPNLC 181 (515)
Q Consensus 163 ~~~~----------~~~f-----~~~f~~-~d~~~ 181 (515)
++.+ +.+| +++|+| +|.+.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~ 118 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLA 118 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhc
Confidence 7754 2233 366666 99986
No 79
>KOG0744|consensus
Probab=98.99 E-value=8.7e-11 Score=114.34 Aligned_cols=100 Identities=25% Similarity=0.291 Sum_probs=70.8
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcc-cCCCCCceeecCCCChhhHHHHHHHHHhhh---------cceEEec
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDA---------NFLKVVS 161 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~giLl~GPpGtGKT~~a~~ia~~~~~---------~~~~v~~ 161 (515)
-|+.++--...|+++..++..-+...+.-..-. |.+.|-|||+||||||||++|||+|..+.+ .++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466666667788888877765554443333222 455667999999999999999999999863 4778888
Q ss_pred chhhHHH----------HH--------------HHHhhcCCcccCCCCCCCCCC
Q psy11253 162 RTIAIVL----------IF--------------AVIFLHMPNLCDSHGHSHHSH 191 (515)
Q Consensus 162 ~~~~~~~----------~f--------------~~~f~~~d~~~~~r~~~~~~~ 191 (515)
.++.|+| +| |++.||+++++..|+....++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~ 273 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN 273 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC
Confidence 8888733 23 466677888888886655443
No 80
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.97 E-value=2.8e-09 Score=118.89 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=56.7
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceEEe
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVV 160 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~v~ 160 (515)
-.++.+.|-++.++.+.+.+.. ..+.++||+||||||||++|+++|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3445677777777766665532 235678999999999999999999875 45666665
Q ss_pred cchhhH------------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 161 SRTIAI------------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 161 ~~~~~~------------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
...+.. +.++ +++|+| ++.++..+.
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~ 295 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA 295 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCC
Confidence 554431 2232 367766 999997764
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.97 E-value=3.6e-10 Score=124.06 Aligned_cols=145 Identities=24% Similarity=0.332 Sum_probs=107.3
Q ss_pred CCcccchHHHHHHHHHHHHH---HHHHHHhhhhhh------cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhc
Q psy11253 2 TTPVVDEVRHKTLQDYRKKL---TEHAEVEGRLRE------TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYL 72 (515)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l 72 (515)
++.|.+++.+++|.+....+ .+++++|.++++ .+.+.+|+.+++.++.+++ .|.......+....++.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 135 (615)
T TIGR02903 58 DTVPDPRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEE--KGPENSSTLKKLERLEKL 135 (615)
T ss_pred CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCccHHHHHHHHHHHHH
Confidence 57789999999999887777 678888888887 6667889999999988887 444444444444444444
Q ss_pred CCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 73 PREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
... .+.+.......+.+++++.|.+..++.+...+.. ..+..++|+||||||||++|+++++..
T Consensus 136 ~~~---~~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 136 EKK---KLHKSAQSLLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HHH---HhhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 222 2333333445578999999999998887666533 234579999999999999999998766
Q ss_pred ----------hhcceEEecchh
Q psy11253 153 ----------DANFLKVVSRTI 164 (515)
Q Consensus 153 ----------~~~~~~v~~~~~ 164 (515)
+.+|+.+++.++
T Consensus 200 ~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 200 KKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hhccCCcccCCCCeEEEechhc
Confidence 457999998775
No 82
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.93 E-value=3.5e-09 Score=120.56 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=65.7
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh----------hcceEE
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKV 159 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~----------~~~~~v 159 (515)
+-.++.+.|.++.++.+.+.+.. ..+++++|+||||||||++|+++|.... .+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 45678899999999888887643 3567899999999999999999999874 789999
Q ss_pred ecchhhH------------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 160 VSRTIAI------------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 160 ~~~~~~~------------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
+.+++.. +.++ +|+|+| ++.++..+.
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~ 288 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGA 288 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC
Confidence 9887752 3343 366777 999997664
No 83
>KOG1558|consensus
Probab=98.83 E-value=2.7e-08 Score=99.90 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=97.6
Q ss_pred CCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11253 253 TGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVK 332 (515)
Q Consensus 253 ~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~ 332 (515)
+.+.+.+.+..+||+|++|+++|+|+||++.+..++-... +.....+++..+..+.|+++.+++|.+.....
T Consensus 47 ~~~~~~~~~~kcFa~GViLaT~FlH~Lpd~~E~l~~~~~~--------~~~~~~fp~~~~i~~~gf~l~l~id~~~~~~~ 118 (327)
T KOG1558|consen 47 QPESRFLSLVKCFAGGVILATGFLHLLPDAFEALESLCLA--------DNPWGKFPFAEFIAMLGFFLTLLIDEITTSYV 118 (327)
T ss_pred CCccchHHHHHHHhccHHHHHHHHHhChhHHHHhhccccc--------CCCCcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999987543211 23334678889999999999999999987665
Q ss_pred CCCCCCCCCCcccccCCCCCCCCC-CCCCCCCCCccchhhhhhhcccCCCC-CCcc-chhhhhhhhhhhhhccccccccc
Q psy11253 333 GGHGHSHGKPIEKKKHTSSGEDSD-LSDDEDDSDDVDYKKTKRVKAKTSSQ-SNDD-IAVAGYLNLAADFTHNFTDGLAI 409 (515)
Q Consensus 333 ~~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~~l~~~~~~lh~~~dg~al 409 (515)
+ |+|.+... ++........... .....+...+ ......+....++.. +..+ -.+..++..++..+|++.+|+++
T Consensus 119 ~-h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~lgi~~HSvfeGlal 195 (327)
T KOG1558|consen 119 G-HGHSHKKR-NEVAVSEEGEDLRAVGNGEHGAIH-VGHSHGHSEPSTPGVVDDGQASRLRSLILELGLSFHSVFEGLAL 195 (327)
T ss_pred c-CCCccccc-cccCCcCcCcccccccccCCcccc-CCCCCCCCCCCCccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 2 33332110 0000000000000 0000000000 000000000000000 1111 23577888999999999999999
Q ss_pred cccccccccccchhHHHHHHHhhhhhhCC
Q psy11253 410 GASYLAGKHVGIVTTITILFHEIPHEIGD 438 (515)
Q Consensus 410 g~~~~~~~~~G~gtgkt~~~~~i~~~l~~ 438 (515)
|++...+.. ...-.++..|++=+++++
T Consensus 196 Gv~~~~~ti--~~L~~al~fHk~fegf~l 222 (327)
T KOG1558|consen 196 GVQDSVSTI--WTLFLALSFHKLFEGFGL 222 (327)
T ss_pred cccCCHHHH--HHHHHHHHHHHHHHHhcc
Confidence 988654322 223345556666665553
No 84
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.80 E-value=5.4e-10 Score=125.40 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=92.1
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcEEEEeccccccccCCCC-------------------CEEEE
Q psy11253 1 MTTPVVDEVRHKTLQDYRKKLTEHAEVEGRLRETTNGPRYVVGCRRQLDKAKLKSG-------------------TRVAL 61 (515)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~v~~ 61 (515)
|++.+++.+|++.|+++.+.|+++++...+- ...+...+.++.+.++.+. ..-.+
T Consensus 217 v~~~~~k~q~e~~lreq~~~i~~elg~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~ 290 (784)
T PRK10787 217 VKKQMEKSQREYYLNEQMKAIQKELGEMDDA------PDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATV 290 (784)
T ss_pred HHHHHhhhhhhhcchhhhhhhcccccCCCcc------hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 3556788899999999999998877742111 0112222333332222221 12223
Q ss_pred ccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChh
Q psy11253 62 DMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGK 141 (515)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGK 141 (515)
.+..+.++-.+|...... ....+.+...+--.|+.|++++|+.|.+++...... +-.....++|+|||||||
T Consensus 291 ~~~yl~~~~~~pw~~~~~-~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 291 VRGYIDWMVQVPWNARSK-VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGK 362 (784)
T ss_pred HHHHHHHHHhCCCCCCCc-ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCH
Confidence 344445555566543221 122222333333367999999999999888653211 111233589999999999
Q ss_pred hHHHHHHHHHhhhcceEEecchh
Q psy11253 142 TLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 142 T~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
|++++.+|+.++.+|++++.+.+
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~~~~ 385 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMALGGV 385 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCC
Confidence 99999999999999999987664
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.77 E-value=2.7e-09 Score=93.38 Aligned_cols=54 Identities=39% Similarity=0.612 Sum_probs=45.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH---------HHHhhc-CCcccCCC
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF---------AVIFLH-MPNLCDSH 184 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f---------~~~f~~-~d~~~~~r 184 (515)
||||||||||||++|+.+|+.++.+++.++++++.+ +.+| +++|+| +|.++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 689999999999999999999999999999999983 2222 455555 99999666
No 86
>KOG0742|consensus
Probab=98.77 E-value=7.4e-09 Score=103.79 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=75.1
Q ss_pred ccc-chhHHHHHHHhhhhhhC-CeEEeeeceecccccchHHHHHHHHHHHHhhCC-eEEEechhhhhccCCCCCCCCchH
Q psy11253 418 HVG-IVTTITILFHEIPHEIG-DFAILIHAIVDKYIGESARLIREMFNYARDHQP-CIIFMDEIDAIGGRRFSEGTSADR 494 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l~-~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p-~ilf~DE~D~~~~~r~~~~~~~~~ 494 (515)
++| ||||||++++.|+..-| +|.++....+.+.-.+....|+++|++|+.... -+|||||+|+|+..|. ....++
T Consensus 389 fyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn--ktymSE 466 (630)
T KOG0742|consen 389 FYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN--KTYMSE 466 (630)
T ss_pred eeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc--hhhhcH
Confidence 348 99999999999999999 689988888888888899999999999998654 5899999999999994 445566
Q ss_pred HHHHHHHHHHHH
Q psy11253 495 EIQRTLMELLNQ 506 (515)
Q Consensus 495 ~~~~~~~~lL~~ 506 (515)
..+..+|.||-.
T Consensus 467 aqRsaLNAlLfR 478 (630)
T KOG0742|consen 467 AQRSALNALLFR 478 (630)
T ss_pred HHHHHHHHHHHH
Confidence 677899999854
No 87
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.74 E-value=6.9e-09 Score=106.60 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=67.7
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcc-cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-------
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI------- 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~------- 166 (515)
-|.|++++++.+..++..+++...+...+. -.+|+++||+||||||||++|+++|+.++.||+.++++.+..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 488999999999998876654443322221 234689999999999999999999999999999999886641
Q ss_pred -----HHHH--HHHhhcCCcccCCCC
Q psy11253 167 -----VLIF--AVIFLHMPNLCDSHG 185 (515)
Q Consensus 167 -----~~~f--~~~f~~~d~~~~~r~ 185 (515)
+.+| ++-+.|.|.+++.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~ 118 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRD 118 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333 334445777777774
No 88
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.6e-08 Score=97.37 Aligned_cols=71 Identities=25% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..+-.|+|..|++++|+.++-+|.--... -...-.+|||||||.|||++|..+|+++|..+-..+++-+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 34678999999999999998887542111 134457999999999999999999999999999999888865
No 89
>PRK04195 replication factor C large subunit; Provisional
Probab=98.68 E-value=1.7e-08 Score=108.48 Aligned_cols=73 Identities=37% Similarity=0.451 Sum_probs=61.9
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
..++..+.+++||.|.+++++.+++.+.... -| .+++.+|||||||||||++|+++|++++.+++.+++++
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 4567778899999999999999999885421 12 23688999999999999999999999999999999887
Q ss_pred hh
Q psy11253 164 IA 165 (515)
Q Consensus 164 ~~ 165 (515)
..
T Consensus 75 ~r 76 (482)
T PRK04195 75 QR 76 (482)
T ss_pred cc
Confidence 64
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.64 E-value=2.8e-08 Score=101.58 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=56.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+..+.+|+++.|.++.++.+...+... ... -.+++++|||||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~-------~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAA-------KKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHH-------Hhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 344569999999999999998887531 111 13567899999999999999999999999998888776543
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.63 E-value=2.1e-08 Score=101.27 Aligned_cols=66 Identities=27% Similarity=0.405 Sum_probs=52.9
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+|+|+.|.+++++.++.++...... -..+++++||||||||||++|+++|++++.++..+.++.+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc
Confidence 6899999999999999887532111 13456799999999999999999999999998777765443
No 92
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.59 E-value=3.1e-08 Score=103.47 Aligned_cols=71 Identities=25% Similarity=0.290 Sum_probs=53.5
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhh--ccc-CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQR--VGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~--~g~-~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.|.|++.+++.+..++..+++.-..... -.+ .+..++||+||||||||++|+++|+.++.||+.++++.+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3899999999998888554333211100 011 1346799999999999999999999999999999987753
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.48 E-value=1.9e-07 Score=92.29 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=63.8
Q ss_pred cc-chhHHHHHHHhhhhhhC---------CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCC
Q psy11253 419 VG-IVTTITILFHEIPHEIG---------DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSE 488 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~---------~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~ 488 (515)
.| ||||||.+|+.++..+. +..+.++.+.++|+|+++++++.+|+.|. ++||||||+|.|....
T Consensus 48 ~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~--- 121 (261)
T TIGR02881 48 KGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG--- 121 (261)
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---
Confidence 48 99999999999998642 22334457889999999999999998874 5899999999996311
Q ss_pred CCCchHHHHHHHHHHHHHccCCC
Q psy11253 489 GTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 489 ~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
+ ....+..++.|++.||...
T Consensus 122 ~---~~~~~~~i~~Ll~~~e~~~ 141 (261)
T TIGR02881 122 E---KDFGKEAIDTLVKGMEDNR 141 (261)
T ss_pred c---cchHHHHHHHHHHHHhccC
Confidence 1 1122357889999998754
No 94
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.47 E-value=2.1e-07 Score=94.00 Aligned_cols=65 Identities=31% Similarity=0.479 Sum_probs=51.7
Q ss_pred CCCCcccccCCHHHHH---HHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 89 GDITYSAIGGLSEQIR---ELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~---~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+-+++|+.|++.... .|+++|+. ....+.+||||||||||++|+.||..++.+|..+++..-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g 85 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG 85 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc
Confidence 4678899999887663 45555533 2345799999999999999999999999999999987654
Q ss_pred H
Q psy11253 166 I 166 (515)
Q Consensus 166 ~ 166 (515)
.
T Consensus 86 v 86 (436)
T COG2256 86 V 86 (436)
T ss_pred H
Confidence 3
No 95
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.46 E-value=1.8e-07 Score=97.37 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=51.8
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhh----cccC-CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQR----VGIT-PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~----~g~~-~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-|.|+++.++.+..++..+++.-..... -++. ...++||+||||||||++|+++|+.++.||..++++.+.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 4799999999998888443322111000 0111 135799999999999999999999999999998877653
No 96
>KOG0989|consensus
Probab=98.45 E-value=1.6e-07 Score=91.54 Aligned_cols=59 Identities=31% Similarity=0.415 Sum_probs=49.5
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
...++..+-+++|+.|++.+.+.++.++.. .--...|||||||||||+.|++.|.+++.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 345677788999999999999999998843 11235899999999999999999999986
No 97
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.44 E-value=1.9e-07 Score=96.14 Aligned_cols=72 Identities=28% Similarity=0.360 Sum_probs=56.1
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhccc-CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.|.|++++++.+..++..+++...+...+.. ..|+++||+||||||||++|+++|+.++.||+.++++.+..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhcc
Confidence 4899999999999988664433322222111 13588999999999999999999999999999999987653
No 98
>CHL00181 cbbX CbbX; Provisional
Probab=98.38 E-value=3.5e-07 Score=91.45 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=63.7
Q ss_pred c-chhHHHHHHHhhhhhhC---------CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCC
Q psy11253 420 G-IVTTITILFHEIPHEIG---------DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG 489 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~---------~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~ 489 (515)
| ||||||.+|+.++..+. +..+....+.++|+|+++++++.+|+.|. ++||||||+|.++..+..
T Consensus 66 G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-- 140 (287)
T CHL00181 66 GSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-- 140 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--
Confidence 8 99999999999988752 23444457889999999999999998863 589999999999865421
Q ss_pred CCchHHHHHHHHHHHHHccCC
Q psy11253 490 TSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 490 ~~~~~~~~~~~~~lL~~md~~ 510 (515)
+. ..+.+++.|++.||..
T Consensus 141 ~~---~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 141 RD---YGSEAIEILLQVMENQ 158 (287)
T ss_pred cc---hHHHHHHHHHHHHhcC
Confidence 11 2246778888888754
No 99
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.37 E-value=5.3e-07 Score=90.10 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=64.8
Q ss_pred cccc-c-chhHHHHHHHhhhhhhC---------CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIG---------DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~---------~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+.++ | ||||||.+|+.++..+. +..+....++++|.|+++.+++.+|+.|. ++||||||+|.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRP 136 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccC
Confidence 3444 8 99999999998887753 23344457888999999999999999873 589999999999765
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
+. .+. ....+.+.|++.|+..
T Consensus 137 ~~--~~~---~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 137 DN--ERD---YGQEAIEILLQVMENQ 157 (284)
T ss_pred CC--ccc---hHHHHHHHHHHHHhcC
Confidence 42 112 2235677888888754
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4.3e-07 Score=96.69 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=47.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+.++.+|+||.|.+.+++.++..+... ..+..+|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456789999999999999988877542 24567899999999999999999999875
No 101
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.36 E-value=4.6e-07 Score=98.25 Aligned_cols=96 Identities=24% Similarity=0.382 Sum_probs=72.7
Q ss_pred CCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceee
Q psy11253 55 SGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 134 (515)
Q Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~ 134 (515)
.+.++.+++++...++.+.+..+-.+..-..++.++.+|+++.|.+..++.++.++.. ..+..+|||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~ 92 (531)
T TIGR02902 26 QTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIY 92 (531)
T ss_pred cCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEE
Confidence 4667777777777777766554444444455667789999999999999988865422 235679999
Q ss_pred cCCCChhhHHHHHHHHHh----------hhcceEEecch
Q psy11253 135 GPPGTGKTLLARAVASQL----------DANFLKVVSRT 163 (515)
Q Consensus 135 GPpGtGKT~~a~~ia~~~----------~~~~~~v~~~~ 163 (515)
||||||||++|+++.+.+ +.+|+.+++..
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 999999999999998753 36889998864
No 102
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.36 E-value=2.9e-07 Score=88.15 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=59.2
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSR 162 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~ 162 (515)
..+..+.++++.|++.||+.|.+-... |.+ | .|.+++||||++|||||+++|++.+++ |..++.|...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQ-------FLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHH-------HHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 345578999999999999998776543 222 2 467899999999999999999999977 5778899888
Q ss_pred hhhH
Q psy11253 163 TIAI 166 (515)
Q Consensus 163 ~~~~ 166 (515)
++..
T Consensus 90 ~L~~ 93 (249)
T PF05673_consen 90 DLGD 93 (249)
T ss_pred Hhcc
Confidence 8876
No 103
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=5.6e-07 Score=91.60 Aligned_cols=68 Identities=25% Similarity=0.268 Sum_probs=53.4
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcceEE
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKV 159 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v 159 (515)
.++..+.+++|+.|.+++++.++.++.. .....+|||||||||||++|+++|+++. ..++.+
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 4566788999999999999998887643 1123589999999999999999999983 346677
Q ss_pred ecchhh
Q psy11253 160 VSRTIA 165 (515)
Q Consensus 160 ~~~~~~ 165 (515)
++++..
T Consensus 71 n~sd~~ 76 (319)
T PLN03025 71 NASDDR 76 (319)
T ss_pred cccccc
Confidence 776643
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.26 E-value=8.3e-07 Score=93.58 Aligned_cols=65 Identities=35% Similarity=0.473 Sum_probs=53.4
Q ss_pred CCCCCCcccccCCHHHHHH---HHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 87 DPGDITYSAIGGLSEQIRE---LREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~---l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
..++.+++|+.|.+...+. +++.+.. .....++||||||||||++|+++|+.++.+|+.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3456789999999988666 7777643 23347999999999999999999999999999998875
Q ss_pred h
Q psy11253 164 I 164 (515)
Q Consensus 164 ~ 164 (515)
.
T Consensus 72 ~ 72 (413)
T PRK13342 72 S 72 (413)
T ss_pred c
Confidence 4
No 105
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.24 E-value=1.4e-06 Score=88.60 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=57.9
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+..++.++.+++|+.|.+..++.++..+.. | ..|+.+|||||||+|||++|++++++++.+++.++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 345677789999999999999999888742 1 2345667799999999999999999999999999988
Q ss_pred h
Q psy11253 163 T 163 (515)
Q Consensus 163 ~ 163 (515)
+
T Consensus 78 ~ 78 (316)
T PHA02544 78 D 78 (316)
T ss_pred c
Confidence 7
No 106
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.3e-07 Score=88.85 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=64.0
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcc----cCC-CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH---
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVG----ITP-PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI--- 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g----~~~-~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~--- 166 (515)
-++|++..|+.+.-++-.+ ........ +.. ..+|||.||.|||||++|+.+|+.++.||-..++.++.-
T Consensus 62 YVIGQe~AKKvLsVAVYNH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred heecchhhhceeeeeehhH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 4789999998887776433 22222111 212 346999999999999999999999999999999988854
Q ss_pred ----------HHHH-----------HHHhhc-CCcccCCCC
Q psy11253 167 ----------VLIF-----------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 167 ----------~~~f-----------~~~f~~-~d~~~~~r~ 185 (515)
+.+- -|+|+| +|-|+++.+
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 1111 277777 999986654
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=1.4e-06 Score=89.12 Aligned_cols=69 Identities=28% Similarity=0.337 Sum_probs=54.3
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcceE
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLK 158 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~ 158 (515)
..++..+.+|+++.|.+.+++.+.+++.. .....+|||||||||||++|+++++++. .+++.
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 34566778899999999999999888753 1123699999999999999999999984 34677
Q ss_pred Eecchhh
Q psy11253 159 VVSRTIA 165 (515)
Q Consensus 159 v~~~~~~ 165 (515)
++++++.
T Consensus 72 i~~~~~~ 78 (337)
T PRK12402 72 FNVADFF 78 (337)
T ss_pred echhhhh
Confidence 7776654
No 108
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.2e-06 Score=94.81 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=48.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++.+|+||.|.+..++.|+.++.. + ..+..+|||||||||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 355678999999999999999998853 1 33567899999999999999999999875
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.20 E-value=1.9e-06 Score=97.14 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=58.0
Q ss_pred ccc-chhHHHHHHHhhhhhh----------C--CeEEeeecee--cccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 418 HVG-IVTTITILFHEIPHEI----------G--DFAILIHAIV--DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l----------~--~~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
++| ||+|||.+++.++..+ + ++.+.+..+. .+|.|+.|++++++|+.|+...|+||||||+|.|+
T Consensus 208 L~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~ 287 (731)
T TIGR02639 208 LVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIV 287 (731)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHh
Confidence 348 9999999999999987 3 2344444555 58999999999999999988889999999999999
Q ss_pred cCCC
Q psy11253 483 GRRF 486 (515)
Q Consensus 483 ~~r~ 486 (515)
+.+.
T Consensus 288 ~~g~ 291 (731)
T TIGR02639 288 GAGA 291 (731)
T ss_pred ccCC
Confidence 8763
No 110
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.20 E-value=2.6e-06 Score=86.54 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=49.8
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCC-CCCceeecCCCChhhHHHHHHHHHhhh-------cceEEecch
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITP-PKGCLLYGPPGTGKTLLARAVASQLDA-------NFLKVVSRT 163 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~-~~giLl~GPpGtGKT~~a~~ia~~~~~-------~~~~v~~~~ 163 (515)
|+.|+++.++++.+.+.... .|... .+.++|.||||||||++|++||+.++. |+|.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 89999999999888775422 23233 355789999999999999999999998 999998854
No 111
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.4e-06 Score=90.18 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=48.2
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++..+.+|+||.|.+..++.++.++.. + ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 456678999999999999999888754 1 23566899999999999999999999875
No 112
>KOG0991|consensus
Probab=98.18 E-value=1.1e-06 Score=82.49 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=55.7
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcceE
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLK 158 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~ 158 (515)
.+++..+..+.||.|.++..+.+.-.... | .-.++++.||||||||+.+.++|.++= -.++.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 56777888899999999999998776643 2 234689999999999999999999873 34677
Q ss_pred EecchhhH
Q psy11253 159 VVSRTIAI 166 (515)
Q Consensus 159 v~~~~~~~ 166 (515)
+++|+-.+
T Consensus 84 LNASdeRG 91 (333)
T KOG0991|consen 84 LNASDERG 91 (333)
T ss_pred ccCccccc
Confidence 88777554
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.8e-06 Score=92.98 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=49.9
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
..++.+-+|+||.|.+.+++.++.++... ..+..+|||||||||||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34667889999999999999999988541 235678999999999999999999999763
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=1.7e-06 Score=90.00 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=50.3
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.|++|+|++.+++.+++++..+..+ +...+...+.++|||||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 5899999999999999999876543 222344567889999999999999999999987654
No 115
>KOG2028|consensus
Probab=98.16 E-value=1.4e-06 Score=86.71 Aligned_cols=82 Identities=30% Similarity=0.479 Sum_probs=57.7
Q ss_pred CCCCCCcccccCCHHHHHH---HHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc---ceEEe
Q psy11253 87 DPGDITYSAIGGLSEQIRE---LREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVV 160 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~---l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~ 160 (515)
...+-+++|..|++....+ |+.+|+. ..-..++|+||||||||++||.||+....+ |+.++
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 3456678888888765543 4444433 233569999999999999999999999888 77777
Q ss_pred cchhhH---HHHHH-------------HHhhc-CCccc
Q psy11253 161 SRTIAI---VLIFA-------------VIFLH-MPNLC 181 (515)
Q Consensus 161 ~~~~~~---~~~f~-------------~~f~~-~d~~~ 181 (515)
+..-.. |.+|. |+|+| +-.+-
T Consensus 198 At~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 198 ATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred ccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 765533 56662 67766 65544
No 116
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.7e-06 Score=91.10 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=48.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+-+|+|+.|.+.+.+.|+.++... ..+..+|||||||||||++|+++|+.+++
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3567789999999999999998887541 23456899999999999999999999986
No 117
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.12 E-value=3e-06 Score=96.83 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=63.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
.+-.++++.|.+..++.+.+.+.. ...++++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345678899988876666665533 234679999999999999999999998 788888
Q ss_pred EecchhhH------------HHHH---------HHHhhc-CCcccCCCC
Q psy11253 159 VVSRTIAI------------VLIF---------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 159 v~~~~~~~------------~~~f---------~~~f~~-~d~~~~~r~ 185 (515)
++.+.+.. +.+| +|+|+| ++.++..+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~ 288 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK 288 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC
Confidence 88777642 2233 377777 999997764
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.12 E-value=4.1e-06 Score=80.91 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCCCCccccc--CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEec
Q psy11253 87 DPGDITYSAIG--GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVS 161 (515)
Q Consensus 87 ~~~~~~~~di~--g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~ 161 (515)
..++.++++.. +.......+++.+. +....+.++|+||||||||++|+++++++ +.+++.+++
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 44557777744 34555555555442 22345679999999999999999999976 567888888
Q ss_pred chhhH
Q psy11253 162 RTIAI 166 (515)
Q Consensus 162 ~~~~~ 166 (515)
.++..
T Consensus 79 ~~~~~ 83 (227)
T PRK08903 79 ASPLL 83 (227)
T ss_pred HHhHH
Confidence 87654
No 119
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.11 E-value=3.6e-06 Score=84.89 Aligned_cols=66 Identities=27% Similarity=0.456 Sum_probs=47.7
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh--hcceEEecchhhH
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTIAI 166 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~~~ 166 (515)
-+.+.|+.++++..--.+.+ .+ -|--..|++||.||||||||.+|-++|+++| .||..++++++.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik-~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IK-EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HH-TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------Hh-cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45788888888876555443 11 1223468899999999999999999999997 9999999999987
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.9e-06 Score=90.20 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=46.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+..+.+|+|+.|.+..++.++.++.. | ..++.+||+||||||||++|+.+|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 45678999999999999999888754 1 3467899999999999999999999764
No 121
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.8e-06 Score=82.95 Aligned_cols=71 Identities=28% Similarity=0.362 Sum_probs=59.0
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhccc-CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-|.|++++|+.+.-++...+++..+-..+.- --||+||+.||.|+|||-+||.+|+-.++||+.|-++.+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 4889999999998888776666655555431 2489999999999999999999999999999999887753
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3.5e-06 Score=88.38 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=48.9
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
++..+.+|++|.|.+.+++.++.++.. | ..+..+|||||||||||++|+++|+.+.+.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 355678999999999999999888753 1 345679999999999999999999999763
No 123
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3e-06 Score=91.01 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=48.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+.+|+||.|.+.+++.|+.++... ..+..+|||||||||||++|+++|+.+.+
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567789999999999999999988541 23455799999999999999999999864
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=2.9e-06 Score=94.71 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=48.9
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.+.++.+|+||.|.+..++.|+.++... +.+..+|||||||||||++||++|+.+++.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4567789999999999999999887541 234567999999999999999999999864
No 125
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.05 E-value=4.8e-06 Score=78.19 Aligned_cols=47 Identities=45% Similarity=0.578 Sum_probs=36.4
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.|+||.|++..|..+.-+..- ..++||+||||||||++|+++..-+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999998776632 36899999999999999999997543
No 126
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=4.6e-06 Score=89.34 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=49.3
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+..+-+|+|+.|.+..++.++.++.. + ..+..+||+||||||||++|+++|+.+++
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3466788999999999999999887744 1 33578999999999999999999999976
No 127
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.03 E-value=9.9e-06 Score=77.94 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=48.9
Q ss_pred CCCCcccc--cCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 89 GDITYSAI--GGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 89 ~~~~~~di--~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
...++++. ++.+..++.+++.+. ...++.++||||||||||++|+++++++. .+++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34555555 356667777776642 13457899999999999999999999874 6788899888
Q ss_pred hhH
Q psy11253 164 IAI 166 (515)
Q Consensus 164 ~~~ 166 (515)
+..
T Consensus 77 ~~~ 79 (226)
T TIGR03420 77 LAQ 79 (226)
T ss_pred HHH
Confidence 765
No 128
>PHA02244 ATPase-like protein
Probab=98.02 E-value=7.4e-06 Score=83.37 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
....+||+||||||||++|+++|..++.||+.++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 35679999999999999999999999999999984
No 129
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.2e-06 Score=89.91 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=49.0
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.++.+.+|+||.|.+..++.|++++..- +.+..+||+||+|||||++|+.+|+.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567889999999999999999988541 23466899999999999999999999986
No 130
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.02 E-value=7.5e-06 Score=83.06 Aligned_cols=68 Identities=32% Similarity=0.388 Sum_probs=52.2
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcce
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFL 157 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~ 157 (515)
+..++..+.+|+|+.|.+.+++.++..+... ....++||||||||||++++++++++. .+++
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 3456677789999999999999999887431 123489999999999999999999973 3455
Q ss_pred EEecch
Q psy11253 158 KVVSRT 163 (515)
Q Consensus 158 ~v~~~~ 163 (515)
.++.++
T Consensus 73 ~~~~~~ 78 (319)
T PRK00440 73 ELNASD 78 (319)
T ss_pred Eecccc
Confidence 554443
No 131
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.02 E-value=6.3e-06 Score=82.03 Aligned_cols=69 Identities=28% Similarity=0.455 Sum_probs=52.3
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh--hcceEEecchhhH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTIAI 166 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~~~ 166 (515)
...-+-+.|+.++.+.---.+.. -+-|-...|+||+.||||||||.+|-+||.++| .||..++++++.|
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~m--------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKM--------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHH--------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 33445677888777753333322 111334578999999999999999999999997 8999999999987
No 132
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.01 E-value=1e-05 Score=84.79 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=61.5
Q ss_pred ccc-c-chhHHHHHHHhhhhhhCCeEEeee--cee-cccccchHHH-HHHHHHHH----HhhCCeEEEechhhhhccCCC
Q psy11253 417 KHV-G-IVTTITILFHEIPHEIGDFAILIH--AIV-DKYIGESARL-IREMFNYA----RDHQPCIIFMDEIDAIGGRRF 486 (515)
Q Consensus 417 ~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~-s~~~g~~~~~-i~~~f~~A----~~~~p~ilf~DE~D~~~~~r~ 486 (515)
.++ | ||+|||.+|+.++..++...+.+. .+. ..|+|+...+ +..+++.+ +...++||||||||.+..++.
T Consensus 111 iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~ 190 (412)
T PRK05342 111 ILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE 190 (412)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC
Confidence 344 8 999999999999999886444443 332 4799987544 46665432 234689999999999987642
Q ss_pred CCCCCchHHHHHHHHHHHHHccCC
Q psy11253 487 SEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
....+.+.--..+-+.||+.|||-
T Consensus 191 ~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 191 NPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred CCCcCCCcccHHHHHHHHHHHhcC
Confidence 211111110013557888888864
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=8.3e-06 Score=93.19 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=57.3
Q ss_pred ccc-chhHHHHHHHhhhhhhC------------CeEEeeecee--cccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 418 HVG-IVTTITILFHEIPHEIG------------DFAILIHAIV--DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l~------------~~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
++| ||+|||.+++.++..+. ++.+....++ ++|.|+.|++|+.+|+.++...|+||||||++.|+
T Consensus 205 L~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~ 284 (821)
T CHL00095 205 LIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLI 284 (821)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHh
Confidence 348 99999999999998863 2344434444 58999999999999999998889999999999999
Q ss_pred cCCC
Q psy11253 483 GRRF 486 (515)
Q Consensus 483 ~~r~ 486 (515)
+.+.
T Consensus 285 ~~g~ 288 (821)
T CHL00095 285 GAGA 288 (821)
T ss_pred cCCC
Confidence 8764
No 134
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.00 E-value=5.5e-06 Score=92.39 Aligned_cols=64 Identities=31% Similarity=0.425 Sum_probs=50.8
Q ss_pred CCCCCCcccccCCHHHHH---HHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 87 DPGDITYSAIGGLSEQIR---ELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~---~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
..++.+++|+.|.+.... .+++++.. .....++||||||||||++|+++|+.++.+|+.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 345678999999998875 45555532 12346899999999999999999999999999988763
No 135
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=4.9e-06 Score=90.97 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=49.4
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+.++.+|+||.|.+.+++.|+.++... ..++.+|||||||||||++|+++|+.+++
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34667889999999999999999988641 34577999999999999999999998865
No 136
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=6.2e-06 Score=90.49 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=48.9
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..++.+-+|+||.|.+..++.|++.+.. + ..+..+|||||||||||++|+++|+.+++
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3466788999999999999999988753 1 23456899999999999999999999975
No 137
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.98 E-value=1.3e-05 Score=70.50 Aligned_cols=56 Identities=55% Similarity=0.871 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 98 g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|.+.+.+.+...+.. ...+.++++||||||||++++.+++.+ +.+++.++..+...
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 445566666655532 245679999999999999999999999 88999998887665
No 138
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.98 E-value=4.9e-06 Score=73.78 Aligned_cols=37 Identities=41% Similarity=0.619 Sum_probs=32.5
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+|||+||||||||++|+.+|+.++.+++.+.++.-..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 4899999999999999999999999999998887543
No 139
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.97 E-value=4.9e-06 Score=83.62 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
...+.|||.||||||||++++.+|+.++.|+++|+++...+
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~ 102 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVS 102 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45678999999999999999999999999999999887543
No 140
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.96 E-value=7.2e-06 Score=84.59 Aligned_cols=57 Identities=30% Similarity=0.457 Sum_probs=48.0
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++.++.+|+|+.|.+.+++.+.+.+.. | ..++.+|||||||+|||++|+++|+.+..
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455778999999999999999988743 1 24567899999999999999999999864
No 141
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.96 E-value=9.8e-06 Score=80.11 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=33.4
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
.+.+||+||||||||++|+++|+.++.+|+.+++..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 467999999999999999999999999999998765
No 142
>PRK06893 DNA replication initiation factor; Validated
Probab=97.96 E-value=6.1e-06 Score=79.89 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=49.6
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEec
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVS 161 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~ 161 (515)
+...++.+|++..+.+... .+ ..+. +.+.. .....++||||||||||++++++|+++. ....+++.
T Consensus 7 ~~~~~~~~fd~f~~~~~~~-~~-~~~~------~~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL-LL-DSLR------KNFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH-HH-HHHH------HHhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3456678899887655322 11 1111 11111 1223478999999999999999999873 23444444
Q ss_pred chh--hHHHHH-------HHHhhcCCcccCC
Q psy11253 162 RTI--AIVLIF-------AVIFLHMPNLCDS 183 (515)
Q Consensus 162 ~~~--~~~~~f-------~~~f~~~d~~~~~ 183 (515)
.+. ....+. .+++||++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 76 SKSQYFSPAVLENLEQQDLVCLDDLQAVIGN 106 (229)
T ss_pred HHhhhhhHHHHhhcccCCEEEEeChhhhcCC
Confidence 322 111222 2555558877643
No 143
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=6.1e-06 Score=89.34 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=48.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.++.+.+|+||.|.+.+++.+..++... ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556789999999999999999887541 23466899999999999999999999975
No 144
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=8.5e-06 Score=89.29 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=48.3
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.++.+.+|+||.|.+..++.|+..+.. | ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 355678999999999999999988854 1 23456899999999999999999999987
No 145
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.95 E-value=1.3e-05 Score=83.68 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=60.1
Q ss_pred c-chhHHHHHHHhhhhhhCCeEEeee--cee-cccccch-HHHHHHHHHHH----HhhCCeEEEechhhhhccCCCCCCC
Q psy11253 420 G-IVTTITILFHEIPHEIGDFAILIH--AIV-DKYIGES-ARLIREMFNYA----RDHQPCIIFMDEIDAIGGRRFSEGT 490 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~-s~~~g~~-~~~i~~~f~~A----~~~~p~ilf~DE~D~~~~~r~~~~~ 490 (515)
| ||+|||.+|+.++..++....... .+. ..|+|+. +..+..+++.+ ....|+||||||||.+..++...+-
T Consensus 123 GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~ 202 (413)
T TIGR00382 123 GPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSI 202 (413)
T ss_pred CCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccc
Confidence 8 999999999999999885444443 222 4699986 55566665533 2346899999999999876532221
Q ss_pred CchHHHHHHHHHHHHHccCC
Q psy11253 491 SADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 491 ~~~~~~~~~~~~lL~~md~~ 510 (515)
+.+..-..+.+.||+-|||.
T Consensus 203 ~~dvsg~~vq~~LL~iLeG~ 222 (413)
T TIGR00382 203 TRDVSGEGVQQALLKIIEGT 222 (413)
T ss_pred cccccchhHHHHHHHHhhcc
Confidence 11100013556788888765
No 146
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=7e-06 Score=89.33 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=48.0
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+-+|+||.|.+.+++.|+.++.. | ..+..+|||||||||||++|+++|+.+++
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356678999999999999999998854 1 23456899999999999999999998874
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.93 E-value=1.3e-05 Score=89.83 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=55.2
Q ss_pred cc-chhHHHHHHHhhhhhh----------C--CeEEeeecee--cccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 419 VG-IVTTITILFHEIPHEI----------G--DFAILIHAIV--DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----------~--~~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
+| ||+|||.+++.++..+ + ++.+....++ .+|.|+.+++++.+|+.+++..|+||||||+|.|++
T Consensus 213 vGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g 292 (758)
T PRK11034 213 VGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhc
Confidence 48 9999999999999764 1 1222223333 579999999999999999988899999999999998
Q ss_pred CCC
Q psy11253 484 RRF 486 (515)
Q Consensus 484 ~r~ 486 (515)
.+.
T Consensus 293 ~g~ 295 (758)
T PRK11034 293 AGA 295 (758)
T ss_pred cCC
Confidence 773
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=7.9e-06 Score=90.13 Aligned_cols=57 Identities=28% Similarity=0.440 Sum_probs=48.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++.+|+||.|.+.+++.++.++... ..+..+|||||||||||++|+++|+.+.+
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4567789999999999999999988541 24567899999999999999999998865
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=1.2e-05 Score=91.83 Aligned_cols=85 Identities=16% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh----------hcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~----------~~~~~ 158 (515)
.+-+++++.|.+..++++.+.+.. ...++++|+||||||||++|+.+|..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 456778999988876666555422 2345799999999999999999999873 45776
Q ss_pred EecchhhH------------HHHH---------HHHhhc-CCcccCCCCC
Q psy11253 159 VVSRTIAI------------VLIF---------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 159 v~~~~~~~------------~~~f---------~~~f~~-~d~~~~~r~~ 186 (515)
++.+.+.. +.++ +|+|+| ++.++..++.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~ 298 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ 298 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc
Confidence 76665542 2223 377777 9999988753
No 150
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=8.6e-06 Score=87.86 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=47.5
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+.+|+||.|.+..++.+...+.. + ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 355678999999999999999888754 1 23456899999999999999999998874
No 151
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=1e-05 Score=87.57 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=48.0
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++.+|+++.|.+..++.+.+++.. + ..++.+|||||||||||++|+++|+.+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456778999999999999999888743 1 34577999999999999999999999853
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=1.1e-05 Score=83.84 Aligned_cols=58 Identities=28% Similarity=0.368 Sum_probs=49.1
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.++..+.+|+|+.|.+..++.+.+.+.. | ..++.+|||||||+|||++|+++|+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456788999999999999999988854 1 34578999999999999999999998865
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=1.1e-05 Score=85.73 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=47.9
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++..+.+|+||.|.+..++.++..+.. | ..+..+|||||||||||++|+++|+.+..
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 455678999999999999999988854 1 24567999999999999999999998854
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=1.1e-05 Score=88.38 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=48.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++.+|++|.|.+.+++.++.++.. | ..+..+||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456778999999999999999887744 1 34567999999999999999999999976
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=1.2e-05 Score=88.07 Aligned_cols=57 Identities=30% Similarity=0.423 Sum_probs=48.5
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.++.+.+|+||.|.+.+++.++.++.. | ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 355678999999999999999998854 1 34567899999999999999999999874
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=1.3e-05 Score=87.31 Aligned_cols=56 Identities=27% Similarity=0.406 Sum_probs=47.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+..+.+|+||.|.+..++.++..+.. + ..++.+|||||||||||++|+.+|+.+++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45678999999999999999998854 1 24567899999999999999999999863
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=1.6e-05 Score=86.49 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=48.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.+..+.+|+||.|.+.+++.|..++.. + ..+..+|||||||||||++|+++|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 456778999999999999999998854 1 224579999999999999999999999863
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.85 E-value=1.7e-05 Score=90.85 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=61.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
.+-.++.+.|.+..++.+.+.+.. ...++++|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 445677888988877666665532 344678999999999999999999986 677888
Q ss_pred EecchhhH------------HHHH---------HHHhhc-CCcccCCCC
Q psy11253 159 VVSRTIAI------------VLIF---------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 159 v~~~~~~~------------~~~f---------~~~f~~-~d~~~~~r~ 185 (515)
++.+.+.. +.++ +|+|+| ++.++..+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~ 283 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK 283 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC
Confidence 87776642 2222 367777 999987654
No 159
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.84 E-value=1.8e-05 Score=76.85 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCCCCCccccc--CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh---cceEEec
Q psy11253 87 DPGDITYSAIG--GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA---NFLKVVS 161 (515)
Q Consensus 87 ~~~~~~~~di~--g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~ 161 (515)
-+++.++++.. ....+...+++.... .....++||||||||||++++++++++.. .+.+++.
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 45566777765 345555555554322 12356899999999999999999998763 2444444
Q ss_pred ch
Q psy11253 162 RT 163 (515)
Q Consensus 162 ~~ 163 (515)
.+
T Consensus 82 ~~ 83 (235)
T PRK08084 82 DK 83 (235)
T ss_pred HH
Confidence 44
No 160
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=1.5e-05 Score=86.84 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=47.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+..+.+|+||.|.+.+++.++..+.. + ..++.+|||||||+|||++|+++|+.+++
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 55678999999999999999998854 1 23567999999999999999999999875
No 161
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=1.5e-05 Score=87.22 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=48.6
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..++.+-+|+||.|.+..++.|++++..- ..+..+|||||+|||||++|+++|+.+++
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34566789999999999999999987541 23456899999999999999999999875
No 162
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=1.9e-05 Score=86.35 Aligned_cols=59 Identities=27% Similarity=0.368 Sum_probs=50.0
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
..+..+.+|+||.|.+..++.|..++.. | ..+..+|||||||+|||++|+++|+.+++.
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4455678999999999999999998854 1 346789999999999999999999998764
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.81 E-value=2e-05 Score=90.22 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=55.3
Q ss_pred ccc-chhHHHHHHHhhhhhh----------CC--eEEeeecee--cccccchHHHHHHHHHHHHh-hCCeEEEechhhhh
Q psy11253 418 HVG-IVTTITILFHEIPHEI----------GD--FAILIHAIV--DKYIGESARLIREMFNYARD-HQPCIIFMDEIDAI 481 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l----------~~--~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~-~~p~ilf~DE~D~~ 481 (515)
++| ||+|||.+++.++..+ +. +.+.+..++ .+|.|+.|++++.+|+.++. ..|+||||||++.|
T Consensus 204 L~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 204 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence 448 9999999999999987 33 333334444 57999999999999998644 57899999999999
Q ss_pred ccCCC
Q psy11253 482 GGRRF 486 (515)
Q Consensus 482 ~~~r~ 486 (515)
.+.+.
T Consensus 284 ~~~~~ 288 (857)
T PRK10865 284 VGAGK 288 (857)
T ss_pred ccCCC
Confidence 87764
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=1.7e-05 Score=87.12 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=47.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++..+.+|+||.|.+..++.|+..+... ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4667889999999999999998887541 23456899999999999999999998863
No 165
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=1.9e-05 Score=89.35 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=48.3
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+.+|+||.|.+.+++.|+.++.. + ..+..+|||||+|||||++|+++|+.+++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 456778999999999999999988753 1 23456899999999999999999999974
No 166
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.78 E-value=2.9e-05 Score=83.49 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=53.1
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
....++..+.+.+|+..-.+-.++++..++..+ .+..+.+-+||+||||||||++++++|++++..+..-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 345667778889999998888888888875421 1222334466799999999999999999999877763
No 167
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.78 E-value=1.5e-05 Score=68.89 Aligned_cols=37 Identities=38% Similarity=0.529 Sum_probs=25.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecc-hhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSR-TIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~-~~~~ 166 (515)
.+||.|+||+|||++|+++|+.++..|-+|.+. ++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllP 38 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLP 38 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCc
Confidence 479999999999999999999999999999875 4544
No 168
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=2.3e-05 Score=74.27 Aligned_cols=72 Identities=29% Similarity=0.497 Sum_probs=57.6
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSR 162 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~ 162 (515)
.+.+.+...+|.|.+.|++.+.+--+. |.+ | .|.++|||+|..||||++++||+-++.+ ..++.|+-+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 455668999999999999987554322 222 3 4678899999999999999999999985 568888888
Q ss_pred hhhH
Q psy11253 163 TIAI 166 (515)
Q Consensus 163 ~~~~ 166 (515)
++..
T Consensus 123 dl~~ 126 (287)
T COG2607 123 DLAT 126 (287)
T ss_pred HHhh
Confidence 8876
No 169
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=3.7e-05 Score=79.81 Aligned_cols=48 Identities=33% Similarity=0.515 Sum_probs=40.9
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
...+.||.|++..|+.+..+.. ..+++||||||||||||+|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4589999999999999877763 35789999999999999999888644
No 170
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.75 E-value=3.1e-05 Score=78.82 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=41.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+.+|++|.|.+.+++.+.-+... ....++||+||||||||++||++|+-+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 467899999999999887654422 1125799999999999999999999884
No 171
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.74 E-value=6.3e-05 Score=69.13 Aligned_cols=69 Identities=30% Similarity=0.411 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHHHHHHHH
Q psy11253 97 GGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIVLIFAVI 173 (515)
Q Consensus 97 ~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~~~f~~~ 173 (515)
.|.+...+++.+.+.. +. ..+..||++|++||||+++|++|-+... .||+.|+++.+....+-..+
T Consensus 2 iG~s~~m~~~~~~~~~----------~a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKR----------AA-SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHH----------HT-TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHH----------Hh-CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4555555555555432 12 3347799999999999999999998764 79999999999776666666
Q ss_pred hhc
Q psy11253 174 FLH 176 (515)
Q Consensus 174 f~~ 176 (515)
|-.
T Consensus 71 FG~ 73 (168)
T PF00158_consen 71 FGH 73 (168)
T ss_dssp HEB
T ss_pred hcc
Confidence 655
No 172
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=2.7e-05 Score=83.41 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=47.4
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++.+|+|+.|.+...+.++..+.. + ..+..+|||||||||||++|+.+|+.+++
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345678999999999999999998844 1 23456899999999999999999999863
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.72 E-value=2.2e-05 Score=68.17 Aligned_cols=39 Identities=38% Similarity=0.568 Sum_probs=33.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhc---ceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~~~~~~~ 166 (515)
++.++|+||||||||++++.+|..+..+ ++.++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 3568999999999999999999999986 77777776544
No 174
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=2.1e-05 Score=67.71 Aligned_cols=30 Identities=33% Similarity=0.668 Sum_probs=26.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
|++.||||+|||++|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 678999999999999999999987766443
No 175
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.71 E-value=5.6e-05 Score=86.37 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=55.6
Q ss_pred ccc-chhHHHHHHHhhhhhhC------------CeEEeeecee--cccccchHHHHHHHHHHHHh-hCCeEEEechhhhh
Q psy11253 418 HVG-IVTTITILFHEIPHEIG------------DFAILIHAIV--DKYIGESARLIREMFNYARD-HQPCIIFMDEIDAI 481 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l~------------~~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~-~~p~ilf~DE~D~~ 481 (515)
++| ||+|||.+++.++..+. ++.+.++.+. .+|.|+.+++++.+|+.++. ..++|||||||+.|
T Consensus 213 LvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l 292 (852)
T TIGR03345 213 LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTL 292 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHh
Confidence 448 99999999999998763 1223333333 47999999999999999975 46899999999999
Q ss_pred ccCCCC
Q psy11253 482 GGRRFS 487 (515)
Q Consensus 482 ~~~r~~ 487 (515)
.+.+++
T Consensus 293 ~~~g~~ 298 (852)
T TIGR03345 293 IGAGGQ 298 (852)
T ss_pred ccCCCc
Confidence 988743
No 176
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.71 E-value=4.5e-05 Score=81.45 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=48.4
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCC-CCceeecCCCChhhHHHHHHHHHhh-hcceEEecch
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPP-KGCLLYGPPGTGKTLLARAVASQLD-ANFLKVVSRT 163 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~-~giLl~GPpGtGKT~~a~~ia~~~~-~~~~~v~~~~ 163 (515)
--|+|+.|++++++.|.+++.. .... +... +-++|.||||+|||++|++||+.+. .|++.+.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~------Aa~g--l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~ 139 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRH------AAQG--LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANG 139 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHH------HHHh--cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCC
Confidence 3467999999999999888733 1122 2233 3466899999999999999999885 5777777633
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=4.6e-05 Score=80.22 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=33.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh-----hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~~~~~~~ 166 (515)
.+.++||||||||||++++++++++ +..++++++.++..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~ 179 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN 179 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence 3568999999999999999999988 56788999888654
No 178
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.70 E-value=3.7e-05 Score=82.04 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=46.6
Q ss_pred CCCCCCccc-ccCCHH--HHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceE
Q psy11253 87 DPGDITYSA-IGGLSE--QIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLK 158 (515)
Q Consensus 87 ~~~~~~~~d-i~g~~~--~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~ 158 (515)
-.|..+|++ +.|... .....++....| + ...+.++||||||||||++++++++++ +..+++
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~y 183 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVY 183 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 346678888 434322 333334433221 1 223569999999999999999999998 455888
Q ss_pred EecchhhH
Q psy11253 159 VVSRTIAI 166 (515)
Q Consensus 159 v~~~~~~~ 166 (515)
+++.++..
T Consensus 184 i~~~~~~~ 191 (450)
T PRK00149 184 VTSEKFTN 191 (450)
T ss_pred EEHHHHHH
Confidence 99888754
No 179
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=3.6e-05 Score=82.76 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=47.2
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+.++.+|+||.|.+.+++.++..+.. | ..+..+|||||||||||++|+++|+.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 356678999999999999999988743 1 2456689999999999999999999884
No 180
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.69 E-value=6.8e-05 Score=77.68 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=49.9
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---------hcceEEecchh
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSRTI 164 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---------~~~~~v~~~~~ 164 (515)
+++.|-++++++|...+...+ . + ..+..+++|||||||||++++++++++. .+++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 478999999999988875311 1 2 2456799999999999999999998774 56888888765
Q ss_pred hH
Q psy11253 165 AI 166 (515)
Q Consensus 165 ~~ 166 (515)
.+
T Consensus 86 ~~ 87 (365)
T TIGR02928 86 DT 87 (365)
T ss_pred CC
Confidence 43
No 181
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.68 E-value=3.3e-05 Score=71.20 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhh----cceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDA----NFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v~~~~~~~ 166 (515)
..+||+||+|||||.+|+++|..+.. +++.++++++..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 45889999999999999999999997 999999999875
No 182
>KOG1969|consensus
Probab=97.68 E-value=1.9e-05 Score=85.11 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=60.0
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhh----cc-------------cchhhhhh-cc--cCCCCC-ceeecCCCCh
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIEL----PL-------------LNPELFQR-VG--ITPPKG-CLLYGPPGTG 140 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~----~~-------------~~~~~~~~-~g--~~~~~g-iLl~GPpGtG 140 (515)
.+.+++..+-.|.|+-|.+.+-..+.-.+.. .+ ..++++.. ++ -.|++. .||+||||-|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 3677888888999999988877665554421 00 11111111 01 123444 5679999999
Q ss_pred hhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 141 KTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 141 KT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
||++|+.||+++|..++.|++|+-.+
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt 364 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERT 364 (877)
T ss_pred hhHHHHHHHHhcCceEEEeccccccc
Confidence 99999999999999999999999766
No 183
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=4.1e-05 Score=84.36 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=48.0
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++.++.+|+++.|.+..++.|+.++... ..+..+|||||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4556789999999999999999988541 12357899999999999999999999876
No 184
>KOG0745|consensus
Probab=97.64 E-value=4.7e-05 Score=77.62 Aligned_cols=57 Identities=32% Similarity=0.545 Sum_probs=47.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH------------HHHH------------HHHhhc-CCcccCC
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI------------VLIF------------AVIFLH-MPNLCDS 183 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~------------~~~f------------~~~f~~-~d~~~~~ 183 (515)
.+|||.||.|+|||++|+.+|+-++.||...++.++.. ..+. -|+|+| +|-|.++
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 56999999999999999999999999999999988854 1111 177777 9999966
Q ss_pred CC
Q psy11253 184 HG 185 (515)
Q Consensus 184 r~ 185 (515)
-+
T Consensus 307 ~~ 308 (564)
T KOG0745|consen 307 AE 308 (564)
T ss_pred Cc
Confidence 54
No 185
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=3.5e-05 Score=70.69 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=29.5
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.++..|+|+||||||||++|+.+|+.++.+|+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 356789999999999999999999999988874
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=4.7e-05 Score=83.50 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=53.3
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
...++..+.+++|+.|.++.+++++.++... .++..+.+-++|+||||||||++++++|++++..++.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 3456778889999999999999998887541 1122333458899999999999999999999876644
No 187
>PRK08727 hypothetical protein; Validated
Probab=97.57 E-value=0.00014 Score=70.64 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHH--HHH-------HHHhhcCCcccCCC
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIV--LIF-------AVIFLHMPNLCDSH 184 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~--~~f-------~~~f~~~d~~~~~r 184 (515)
..++||||||||||.+++++++++. ...++++..++... .++ .+++||++.+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence 4599999999999999999987754 45566666655431 111 25666687776433
No 188
>PRK06620 hypothetical protein; Validated
Probab=97.56 E-value=9.8e-05 Score=70.67 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred cCCCCCCcccccCCH---HHHHHHHHHHhhcccchhhhhhcccCC-CCCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 86 EDPGDITYSAIGGLS---EQIRELREVIELPLLNPELFQRVGITP-PKGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 86 ~~~~~~~~~di~g~~---~~~~~l~~~i~~~~~~~~~~~~~g~~~-~~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
...|..++++..--+ .....+++... .++..+ .+.++||||||||||++++++++..+..+
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~----------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQC----------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHH----------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 345566777765444 23333333321 123233 26799999999999999999999887643
No 189
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.56 E-value=0.00011 Score=83.64 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=52.2
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee--c---------eecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH--A---------IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~--~---------~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
.| ||||||.+++.++..++...+.++ . ....|+|.....+...|..|....| ||||||||.+.++
T Consensus 353 ~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 353 VGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence 38 999999999999999985443332 1 1247999999999999999987765 7899999999854
No 190
>KOG1942|consensus
Probab=97.55 E-value=7.1e-05 Score=72.71 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=50.2
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh--hcceEEecchhhH
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTIAI 166 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~~~ 166 (515)
..-..+.|++...+.---.+.+ ++.+ . -..|.+||.||||||||.+|-+|+.++| .||..+.++++.|
T Consensus 35 ~~~~g~vGQ~~AReAagiivdl-ik~K----k---maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDL-IKSK----K---MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred ecccccccchhhhhhhhHHHHH-HHhh----h---ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 3345677888777653333322 1111 1 2458899999999999999999999996 7999999999988
No 191
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.55 E-value=0.00011 Score=75.14 Aligned_cols=38 Identities=45% Similarity=0.656 Sum_probs=34.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
..+.+||-||||||||++|+++|..++.+|++|.+..-
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~ 79 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPD 79 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCC
Confidence 34779999999999999999999999999999998853
No 192
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.53 E-value=0.00011 Score=74.27 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
..+|++||||||||||.++.|+|+++ |.++..+..+++..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 45799999999999999999999998 56777777777654
No 193
>PRK08116 hypothetical protein; Validated
Probab=97.53 E-value=0.00017 Score=71.46 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
..|++||||||||||.+|.++|+++ +.+++.++.+++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4579999999999999999999987 67888888887655
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=7.6e-05 Score=85.67 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=54.8
Q ss_pred ccc-chhHHHHHHHhhhhhh----------CC--eEEeeecee--cccccchHHHHHHHHHHHHhh-CCeEEEechhhhh
Q psy11253 418 HVG-IVTTITILFHEIPHEI----------GD--FAILIHAIV--DKYIGESARLIREMFNYARDH-QPCIIFMDEIDAI 481 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l----------~~--~~i~~~~~~--s~~~g~~~~~i~~~f~~A~~~-~p~ilf~DE~D~~ 481 (515)
++| ||+|||.+++.++..+ +. +.+.+..++ .+|.|+.+++++.+|+.++.. .|+||||||++.|
T Consensus 199 L~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 199 LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 458 9999999999999876 22 233233443 579999999999999999764 5899999999999
Q ss_pred ccCCC
Q psy11253 482 GGRRF 486 (515)
Q Consensus 482 ~~~r~ 486 (515)
++.++
T Consensus 279 ~~~g~ 283 (852)
T TIGR03346 279 VGAGK 283 (852)
T ss_pred hcCCC
Confidence 87663
No 195
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.53 E-value=9e-05 Score=75.69 Aligned_cols=54 Identities=28% Similarity=0.329 Sum_probs=45.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.++..+|++|.|+++.|..+.-.+..| ...|+||+||+|||||++||++++.+.
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999988776553 236899999999999999999998875
No 196
>PRK05642 DNA replication initiation factor; Validated
Probab=97.52 E-value=0.00012 Score=71.05 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=32.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
.+.++||||+|||||.+++++++++ +..+++++..++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 3678999999999999999999865 46788888888764
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.51 E-value=7.8e-05 Score=69.22 Aligned_cols=40 Identities=38% Similarity=0.572 Sum_probs=31.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
..++++|+||||||||.+|.++++++ +.+.+.++.+++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 45789999999999999999999876 66777888877765
No 198
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00016 Score=71.01 Aligned_cols=40 Identities=33% Similarity=0.525 Sum_probs=35.6
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
..++++||||||+|||.+|-||++++ |..++.+..+++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 56889999999999999999999988 56788888888877
No 199
>PRK12377 putative replication protein; Provisional
Probab=97.48 E-value=0.00022 Score=69.69 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
..+++|+||||||||.+|.|+|+.+. ..++.++..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 36899999999999999999999984 5567777777665
No 200
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=7.5e-05 Score=68.60 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=29.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
+.|++.||||+|||++|+.|++.++.|++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 45899999999999999999999999988765
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.46 E-value=0.00024 Score=69.26 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=33.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
++++|+||||||||+++.++|+++ +.+++.++..++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 589999999999999999999998 56788888877765
No 202
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.45 E-value=0.00025 Score=74.27 Aligned_cols=67 Identities=28% Similarity=0.450 Sum_probs=50.7
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEEecchhh
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSRTIA 165 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~~~~~~ 165 (515)
...+.+.|-+++.+++...+... .. + ..+..+++|||||||||++++.+++++ +..++.+++....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~------~~--~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPA------LR--G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHH------hC--C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34456888899999988887431 11 1 234669999999999999999999987 4678889887654
Q ss_pred H
Q psy11253 166 I 166 (515)
Q Consensus 166 ~ 166 (515)
+
T Consensus 98 ~ 98 (394)
T PRK00411 98 T 98 (394)
T ss_pred C
Confidence 4
No 203
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.44 E-value=0.00019 Score=61.96 Aligned_cols=50 Identities=30% Similarity=0.406 Sum_probs=38.8
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC--ceeecCCCChhhHHHHHHHHHh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+.|+.-+.+.|.++|...+..+ .|.|. +.|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 58899999998888886644322 34455 3479999999999999999874
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.00016 Score=73.63 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=33.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
.++++||||||||||.++.|+|+++ +..++.++..++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 3789999999999999999999997 56777888877654
No 205
>PRK13947 shikimate kinase; Provisional
Probab=97.37 E-value=0.00011 Score=67.36 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=28.0
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.|++.||||||||++|+.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999986543
No 206
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.00029 Score=72.89 Aligned_cols=55 Identities=29% Similarity=0.303 Sum_probs=47.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+.++++|.|.+++++.+.+++.. | ..+..+||+||+|+||+++|.++|+.+-+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5667899999999999999988855 1 34567999999999999999999998864
No 207
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.37 E-value=0.00017 Score=79.52 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=47.2
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
...|+.-|+++.|.++.++.++.++.. +++++|+||||||||++++++|+.++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 355678899999999999988887743 2589999999999999999999999765
No 208
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00016 Score=79.63 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=47.6
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..+.+|+||.|.+.+++.+...+.. | ..+..+|||||+|+|||++|+++|+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678999999999999999998853 1 3456799999999999999999999886
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00026 Score=78.47 Aligned_cols=65 Identities=28% Similarity=0.464 Sum_probs=55.2
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCC----CceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK----GCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~----giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
.-|.|++.+.+.+.++|.. .+.|+..|+ ..||.||.|+|||-+|+++|..+. ..+++++.|+..-
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 5689999999999999855 555665433 377899999999999999999998 8999999999975
No 210
>PRK03839 putative kinase; Provisional
Probab=97.37 E-value=0.00011 Score=68.14 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=27.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
|+|.||||+|||++++.+|+.++.+|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999998886653
No 211
>PRK08181 transposase; Validated
Probab=97.36 E-value=0.00013 Score=72.06 Aligned_cols=40 Identities=33% Similarity=0.480 Sum_probs=32.9
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
..++++|+||||||||.+|.++++++ +..++.++..++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 45679999999999999999999766 56677777777655
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.36 E-value=0.00028 Score=74.46 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=24.9
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
....+||+||||||||++|++++...+.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 4577999999999999999999998754
No 213
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.00013 Score=67.42 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=28.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4889999999999999999999999987764
No 214
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.00013 Score=77.36 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=33.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
.++++||||||||||++++++++++ +..++++++.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~ 182 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE 182 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence 3679999999999999999999987 57788888876643
No 215
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.33 E-value=0.00015 Score=65.19 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=27.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.|+|+||||||||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999998877544
No 216
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.00047 Score=73.26 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh-----hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~~~~~~~ 166 (515)
.+.++||||||||||.+++++|+++ +..++++++.++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~ 173 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 3569999999999999999999987 35678888887654
No 217
>PRK06921 hypothetical protein; Provisional
Probab=97.31 E-value=0.00026 Score=70.03 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=32.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~ 166 (515)
.++++|+||||||||.++.|+|+++ +..++.++..++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 5679999999999999999999987 45667777766544
No 218
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.00028 Score=71.66 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=43.0
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+|+||.|.+.+++.+...+.. | ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 689999999999999888743 1 34567899999999999999999998743
No 219
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.31 E-value=0.00023 Score=78.35 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=46.6
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
....|+..|++|.|.+..++.+..++.. .+.++++||||||||++|+++++.+..
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 4466778999999999999988887743 247999999999999999999998763
No 220
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.30 E-value=0.00043 Score=66.53 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHh-----hhcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~~~~~~~ 166 (515)
+.+.+|||+|+|||.+.++++++. +..++++++.++..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~ 77 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR 77 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH
Confidence 348899999999999999999886 45688898888765
No 221
>KOG3347|consensus
Probab=97.29 E-value=0.00015 Score=63.73 Aligned_cols=32 Identities=31% Similarity=0.603 Sum_probs=28.9
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.+||+.|-||||||+++..+|..++.++|.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999998887664
No 222
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.27 E-value=0.00032 Score=73.42 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=36.9
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+++.+.+...+.+...+. ..+.++|+||||||||++|+.+|..+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5667777777776655542 3578999999999999999999998853
No 223
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.00022 Score=63.21 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=27.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|++.||||+|||++|+.+++.++ ...++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 67899999999999999999999 55566666443
No 224
>PRK13949 shikimate kinase; Provisional
Probab=97.24 E-value=0.00017 Score=66.36 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=29.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
+.|+|.||||+|||++++.+|+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46899999999999999999999998888765
No 225
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00019 Score=65.38 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
+.|.|.|++|+|||++.|++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56899999999999999999999999998654
No 226
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00042 Score=70.54 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=50.3
Q ss_pred ccccc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhhC----CeEEEechhhhh
Q psy11253 416 GKHVG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDHQ----PCIIFMDEIDAI 481 (515)
Q Consensus 416 ~~~~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~----p~ilf~DE~D~~ 481 (515)
.++.| ||||||.+|+.|+..++.-+..++...+. .+.|+.+|+.|++.. ..|||+|||-.|
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g-----vkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG-----VKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceEEecccccc-----HHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 34558 99999999999999999877777766543 589999999997653 489999999776
No 227
>PRK14531 adenylate kinase; Provisional
Probab=97.22 E-value=0.00022 Score=66.45 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=29.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+.|+++||||+|||++++.+|+.+|.+. ++..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~--is~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRH--LSTGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCe--EecccHHH
Confidence 4589999999999999999999998765 44555543
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00049 Score=69.84 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=44.1
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---------------------
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--------------------- 153 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~--------------------- 153 (515)
++.+.+.....+...+.. .+ ..+..+|||||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------SG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHh----------cC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 455666666666555532 11 2334699999999999999999999998
Q ss_pred ---hcceEEecchhhH
Q psy11253 154 ---ANFLKVVSRTIAI 166 (515)
Q Consensus 154 ---~~~~~v~~~~~~~ 166 (515)
..++.+++++...
T Consensus 71 ~~~~d~lel~~s~~~~ 86 (325)
T COG0470 71 GNHPDFLELNPSDLRK 86 (325)
T ss_pred cCCCceEEecccccCC
Confidence 5678888777654
No 229
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.21 E-value=0.00027 Score=76.81 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh-----hcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~~~~~~ 166 (515)
+.++||||+|||||.|++++++++. ..++++++.++..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~ 357 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 4599999999999999999999874 5778999888764
No 230
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.00058 Score=70.26 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=47.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+.+..++++.|.+.+++.+..++.. | ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5667899999999999999998854 1 34567999999999999999999999876
No 231
>PRK14532 adenylate kinase; Provisional
Probab=97.18 E-value=0.00023 Score=66.56 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=29.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIV 167 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~ 167 (515)
.|++.||||+|||++|+.+|+.++.+ .++.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~--~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV--QLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe--EEeCcHHHHH
Confidence 37899999999999999999999854 4566666553
No 232
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.00027 Score=75.30 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=49.3
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
++++-+|+|+.|.+...+.|++++.. . +-..+.||.||.|||||++||.+|+.+++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~--------~----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN--------G----RIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh--------C----cchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 45678899999999999999999865 1 234679999999999999999999999865
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.15 E-value=0.00028 Score=59.68 Aligned_cols=26 Identities=42% Similarity=0.804 Sum_probs=22.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
|.||||||||||++|+.+|+.+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999998887544
No 234
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.15 E-value=0.00058 Score=63.08 Aligned_cols=59 Identities=29% Similarity=0.485 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc---ceEEecchh
Q psy11253 96 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRTI 164 (515)
Q Consensus 96 i~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~~~~~ 164 (515)
+.|-+++.+++...+. ...-..++.++++||||+|||++.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~----------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD----------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG----------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH----------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3567777888777662 1122345789999999999999999999888777 777776665
No 235
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.00026 Score=65.74 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=29.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHHH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVL 168 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~~ 168 (515)
|+++||||+|||++|+.+|..++ +..++.+++....
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHH
Confidence 67899999999999999999997 5667777766533
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.15 E-value=0.00074 Score=73.78 Aligned_cols=75 Identities=25% Similarity=0.332 Sum_probs=58.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+..+++++.|.....+++.+.+... . .....|||+|+||||||++|++|.... +.||+.|++..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-------a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-------A----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-------h----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3467889999999988888877541 1 234679999999999999999999875 4799999999886
Q ss_pred HHHHHHHHh
Q psy11253 166 IVLIFAVIF 174 (515)
Q Consensus 166 ~~~~f~~~f 174 (515)
...+-..+|
T Consensus 260 ~~~~~~~lf 268 (534)
T TIGR01817 260 ETLLESELF 268 (534)
T ss_pred HHHHHHHHc
Confidence 544434444
No 237
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.14 E-value=0.00029 Score=65.13 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+-|+|.||||+|||++|+.+++.++.+++.++.+++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4588999999999999999999999888877555543
No 238
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.13 E-value=0.00077 Score=58.29 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=51.9
Q ss_pred cc-chhHHHHHHHhhhhhhCCe---EEeeecee----------------cccccchHHHHHHHHHHHHhhCCeEEEechh
Q psy11253 419 VG-IVTTITILFHEIPHEIGDF---AILIHAIV----------------DKYIGESARLIREMFNYARDHQPCIIFMDEI 478 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~---~i~~~~~~----------------s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~ 478 (515)
.| ||+|||.+++.++..+... .+.+.... ..........++.+++.|+...|.|||+||+
T Consensus 8 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 8 VGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred ECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 37 9999999999999998753 44443221 1233566788899999999988899999999
Q ss_pred hhhccCC
Q psy11253 479 DAIGGRR 485 (515)
Q Consensus 479 D~~~~~r 485 (515)
+.+....
T Consensus 88 ~~~~~~~ 94 (148)
T smart00382 88 TSLLDAE 94 (148)
T ss_pred cccCCHH
Confidence 9997554
No 239
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.00012 Score=70.04 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
..++++||||||||++|.++|+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3699999999999999999999987433
No 240
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.00028 Score=69.26 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
.+.+++|+||||||||.+|.+++.++ |..++.++..++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~ 138 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWV 138 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHH
Confidence 45789999999999999999999876 3444444444443
No 241
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.12 E-value=0.00031 Score=62.47 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=27.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
|.+.||||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999988776
No 242
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.12 E-value=0.00071 Score=73.25 Aligned_cols=75 Identities=29% Similarity=0.397 Sum_probs=58.4
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHH-----------hhhcceEE
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ-----------LDANFLKV 159 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~-----------~~~~~~~v 159 (515)
-+++++.|.....+.+++.+.. +. .....||++|+|||||+++|++|-+. .+.||+.|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4688899999999988887744 12 23467999999999999999999887 46799999
Q ss_pred ecchhhHHHHHHHHhhc
Q psy11253 160 VSRTIAIVLIFAVIFLH 176 (515)
Q Consensus 160 ~~~~~~~~~~f~~~f~~ 176 (515)
++..+....+-..+|-.
T Consensus 285 nCaal~e~lleseLFG~ 301 (538)
T PRK15424 285 NCGAIAESLLEAELFGY 301 (538)
T ss_pred ecccCChhhHHHHhcCC
Confidence 99998664444455544
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.11 E-value=0.0015 Score=72.95 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=53.1
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCc-eeecCCCChhhHHHHHHHHHhh----------hcceEEecc
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGC-LLYGPPGTGKTLLARAVASQLD----------ANFLKVVSR 162 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~gi-Ll~GPpGtGKT~~a~~ia~~~~----------~~~~~v~~~ 162 (515)
+.|-+-++++++|..++.-- +.. ..+.++ ++|||||||||.+++.+..++. +.++.|+|.
T Consensus 755 D~LPhREeEIeeLasfL~pa------Ikg---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESG------IKQ---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHH------Hhc---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 67889999999998888542 221 224454 5999999999999999988772 457889997
Q ss_pred hhhH-HHHHHHHhh
Q psy11253 163 TIAI-VLIFAVIFL 175 (515)
Q Consensus 163 ~~~~-~~~f~~~f~ 175 (515)
.+.. ..+|.+++.
T Consensus 826 ~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 826 NVVHPNAAYQVLYK 839 (1164)
T ss_pred ccCCHHHHHHHHHH
Confidence 7654 445555553
No 244
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0015 Score=67.56 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=49.3
Q ss_pred ccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc-----ceEEecchhhH
Q psy11253 96 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSRTIAI 166 (515)
Q Consensus 96 i~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~-----~~~v~~~~~~~ 166 (515)
+-+-+.+++.+...+.- .+.. ..|.++++|||||||||.+++.++.++.-+ +++|++-...+
T Consensus 19 l~~Re~ei~~l~~~l~~------~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 19 LPHREEEINQLASFLAP------ALRG---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred ccccHHHHHHHHHHHHH------HhcC---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 77888999998887643 1221 334569999999999999999999999866 89999888765
No 245
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.09 E-value=0.00038 Score=67.25 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=29.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|..|++.||||+|||++|+.+|+.++.+++ +..++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHH
Confidence 345999999999999999999999986554 4555543
No 246
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00035 Score=62.43 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=25.4
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|-+.||||||||++|+-+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4568999999999999999999999875
No 247
>PRK13948 shikimate kinase; Provisional
Probab=97.08 E-value=0.00038 Score=64.80 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
++..|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4577999999999999999999999999998544
No 248
>KOG0745|consensus
Probab=97.05 E-value=0.0011 Score=68.03 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=53.8
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee--c-eecccccch-HHHHHHHHHHHHh----hCCeEEEechhhhhccCC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH--A-IVDKYIGES-ARLIREMFNYARD----HQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~--~-~~s~~~g~~-~~~i~~~f~~A~~----~~p~ilf~DE~D~~~~~r 485 (515)
+| .|+|||++++-+|.-+.+.+..+. . -...|+||. |.-|.++...|.- .+..|+||||+|.|...-
T Consensus 232 lGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 232 LGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred ECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 48 899999999999999998777765 2 456799998 7778888877642 245899999999998543
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=97.05 E-value=0.00048 Score=67.89 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
....+++|+||||||||++|.+++..+ |..+..++..++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 345679999999999999999998765 4566666666655
No 250
>PRK06762 hypothetical protein; Provisional
Probab=97.05 E-value=0.00042 Score=63.29 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=30.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+-+++.|+||+|||++|+.+++.++..++.++.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4578999999999999999999997666667655443
No 251
>PRK06217 hypothetical protein; Validated
Probab=97.04 E-value=0.0004 Score=64.73 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=26.7
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
.|++.|+||+|||++|+++++.++.+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 489999999999999999999999886543
No 252
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.04 E-value=0.00038 Score=65.16 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=28.0
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|+++||||+|||++|+.+|+.++.++ ++.+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHH
Confidence 78999999999999999999987654 55555543
No 253
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.03 E-value=0.00039 Score=62.35 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=25.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+++.||||+|||++|+.+++.++.+++ +.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 578999999999999999999876554 44444
No 254
>PRK07261 topology modulation protein; Provisional
Probab=97.03 E-value=0.00042 Score=63.87 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.|++.||||+|||++|+.++..++.+++.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 3789999999999999999999998877654
No 255
>PHA02624 large T antigen; Provisional
Probab=97.01 E-value=0.00052 Score=73.90 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=35.3
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|++..+.++||||||||||+++.+|++.++-..+.|++++-.+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks 469 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL 469 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh
Confidence 4555567999999999999999999999965677788766554
No 256
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.00 E-value=0.00066 Score=68.75 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 99 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.+++++.+.+.+..-+.+.. -+.+...|.|.|+||||||++++.+|..++.+|+.
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 34455555665544222222 24566779999999999999999999999999994
No 257
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.99 E-value=0.00045 Score=62.93 Aligned_cols=32 Identities=34% Similarity=0.618 Sum_probs=26.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+++.||||||||++|+.+++.++.++ ++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~--v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF--IEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE--EeCccc
Confidence 57899999999999999999998554 455554
No 258
>PRK13946 shikimate kinase; Provisional
Probab=96.99 E-value=0.00043 Score=64.58 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=30.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
++.|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999987765
No 259
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.00087 Score=67.94 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=44.5
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.|++|.|.+.+++.+.+++.. | ..+..+|||||+|+||+.+|+++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 588999999999999998854 1 335789999999999999999999987644
No 260
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.00054 Score=62.90 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
+.++|.|+||||||++++.+|+.++.+|+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4588999999999999999999999998754
No 261
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.96 E-value=0.00097 Score=68.10 Aligned_cols=49 Identities=33% Similarity=0.397 Sum_probs=39.7
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.|..|.|.++.|..+.-.+..| ...++++.||||+|||+++|+++..+.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 5788999999998875555332 235799999999999999999998773
No 262
>PRK14530 adenylate kinase; Provisional
Probab=96.95 E-value=0.00057 Score=65.44 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
.|++.||||+|||++|+.+|+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999998766543
No 263
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.94 E-value=0.00095 Score=74.22 Aligned_cols=48 Identities=31% Similarity=0.342 Sum_probs=38.8
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.|.+|.|++..+..+.-....| ...++||+||||||||++||++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 5789999999887776555331 12469999999999999999999988
No 264
>PRK06547 hypothetical protein; Provisional
Probab=96.93 E-value=0.00057 Score=63.04 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=28.8
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
..+.-|+++||||+|||++|+.+++.++.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3456688899999999999999999988776654
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.92 E-value=0.00062 Score=59.22 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=30.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh--------hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL--------DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~--------~~~~~~v~~~~~~~ 166 (515)
.+.++++||||+|||++++.+++.+ ..+++.++.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRT 50 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCC
Confidence 3568899999999999999999998 67788888777663
No 266
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.92 E-value=0.0016 Score=66.43 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=54.1
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHHHH
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIVLI 169 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~~~ 169 (515)
++++.|.....+.+.+.+..- . .....||++|+|||||+++|++|..... .||+.|++..+....+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-------a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-------A----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 456888888888877776441 1 3346799999999999999999987654 6999999999865444
Q ss_pred HHHHhh
Q psy11253 170 FAVIFL 175 (515)
Q Consensus 170 f~~~f~ 175 (515)
-..+|-
T Consensus 74 ~~~lfg 79 (326)
T PRK11608 74 DSELFG 79 (326)
T ss_pred HHHHcc
Confidence 345554
No 267
>PRK14528 adenylate kinase; Provisional
Probab=96.92 E-value=0.00058 Score=63.86 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=28.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+.+++.||||+|||++|+.+|+.++.+.+. ..++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 458899999999999999999999877644 45543
No 268
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.89 E-value=0.00071 Score=62.42 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=29.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
++.|+|.||||+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999988766553
No 269
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.88 E-value=0.00068 Score=70.31 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=62.2
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCCeEEeee--cee-ccccc-chHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCC
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIV-DKYIG-ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSE 488 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~-s~~~g-~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~ 488 (515)
.+.++ | ||+|||.+++.++..++...+.+. ... ..|+| +.++.++.+|+.|... + ++|.++..|...
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~------i-~~d~i~~~r~~a 120 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKL------V-KEEAIEKVRDRA 120 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHH------H-HHHHHhHHHHHH
Confidence 44454 8 999999999999999998777666 344 47999 7899999999999774 3 579999988332
Q ss_pred CCCchHHHHHHHHHHHHH
Q psy11253 489 GTSADREIQRTLMELLNQ 506 (515)
Q Consensus 489 ~~~~~~~~~~~~~~lL~~ 506 (515)
. ....++++++||..
T Consensus 121 ~---~~ae~riv~~Ll~~ 135 (441)
T TIGR00390 121 E---ELAEERIVDVLLPP 135 (441)
T ss_pred H---HHHHHHHHHHhcCC
Confidence 2 22345778888753
No 270
>PRK02496 adk adenylate kinase; Provisional
Probab=96.86 E-value=0.00072 Score=62.94 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=27.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+++.||||+|||++|+.+|+.++.+. ++.+++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~--i~~~~~~ 36 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPH--ISTGDIL 36 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EEhHHHH
Confidence 378999999999999999999998654 4444443
No 271
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.00053 Score=62.13 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=28.7
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.|++.|.||||||++|+.++ ++|.+.+.++ ++..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 37899999999999999999 8888877766 5554
No 272
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.84 E-value=0.0016 Score=70.54 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=58.3
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHH
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIV 167 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~ 167 (515)
.+|+++.|.....+.+++.+.. +. .....||++|+|||||+++|++|.+.. +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 5688999999998888887744 12 234679999999999999999998764 579999999988664
Q ss_pred HHHHHHhhc
Q psy11253 168 LIFAVIFLH 176 (515)
Q Consensus 168 ~~f~~~f~~ 176 (515)
.+-..+|-.
T Consensus 278 lleseLFG~ 286 (526)
T TIGR02329 278 LLEAELFGY 286 (526)
T ss_pred HHHHHhcCC
Confidence 444455544
No 273
>PF13245 AAA_19: Part of AAA domain
Probab=96.83 E-value=0.0022 Score=50.68 Aligned_cols=43 Identities=33% Similarity=0.436 Sum_probs=30.2
Q ss_pred ceeecCCCChhh-HHHHHHHHHh------hhcceEEecchhhHHHHHHHH
Q psy11253 131 CLLYGPPGTGKT-LLARAVASQL------DANFLKVVSRTIAIVLIFAVI 173 (515)
Q Consensus 131 iLl~GPpGtGKT-~~a~~ia~~~------~~~~~~v~~~~~~~~~~f~~~ 173 (515)
+++.|||||||| ++++.++... +..++.+....-..+.+...+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 445999999999 6677777766 456777777766655554333
No 274
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=62.22 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
++-|+++|+||||||++++.++..+...+-.++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 4568899999999999999999999422333555554
No 275
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.81 E-value=0.0025 Score=65.12 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIVLIFAVIFL 175 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~~~f~~~f~ 175 (515)
....||++|+|||||+++|++|..... .||+.|++..+....+-..+|-
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG 72 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFG 72 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhc
Confidence 346799999999999999999987664 7999999998765444344443
No 276
>PRK14527 adenylate kinase; Provisional
Probab=96.79 E-value=0.00087 Score=62.85 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=29.6
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.++-++++||||+|||++|+.+|+.++.+.+ +..++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i--s~gd~~r 42 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL--STGDILR 42 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC--CccHHHH
Confidence 3455899999999999999999999986544 4445443
No 277
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.77 E-value=0.0023 Score=69.37 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=55.4
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHHH
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIVL 168 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~~ 168 (515)
...++.|.....+.+.+.+.. .. ..+..||++|++|||||++|++|.... +.||+.|++..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------VA-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 567888988888888887754 11 235679999999999999999999875 4799999999886543
Q ss_pred HHHHHh
Q psy11253 169 IFAVIF 174 (515)
Q Consensus 169 ~f~~~f 174 (515)
+-.-+|
T Consensus 254 ~e~~lf 259 (509)
T PRK05022 254 AESELF 259 (509)
T ss_pred HHHHhc
Confidence 333333
No 278
>PLN02200 adenylate kinase family protein
Probab=96.76 E-value=0.00097 Score=64.73 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHHH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVL 168 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~~ 168 (515)
.|.-+++.||||+|||++|+.+|+.++. ..++.+++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~--~his~gdllR~~ 81 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGF--KHLSAGDLLRRE 81 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC--eEEEccHHHHHH
Confidence 3445788999999999999999999875 468888877543
No 279
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.76 E-value=0.0021 Score=72.46 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=53.1
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
+..++++.|.....+.+.+.+.. +. .....||++|+||||||++|++|.... +.||+.+++..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~-------~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEM-------VA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 35678899998888888777654 11 234579999999999999999998865 57999999998755
Q ss_pred H
Q psy11253 167 V 167 (515)
Q Consensus 167 ~ 167 (515)
.
T Consensus 441 ~ 441 (686)
T PRK15429 441 G 441 (686)
T ss_pred h
Confidence 3
No 280
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.75 E-value=0.00091 Score=63.75 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=27.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|++.||||+|||++|+.+|..++.+. ++.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~--is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH--ISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--eehhHHHH
Confidence 78999999999999999999998655 44555544
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.74 E-value=0.0011 Score=61.74 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-+++.||||+|||++|+.+++.+|.+ .++.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHH
Confidence 47789999999999999999998754 55555544
No 282
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.73 E-value=0.0025 Score=71.18 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=52.0
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
..+++++.|.+...+++.+.+.. +. .....|||+|+|||||+++|++|.+... .||+.|++..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~-------~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ-------AA----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH-------Hh----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 45788898988887777666543 11 2345699999999999999999998764 7999999998865
No 283
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.73 E-value=0.001 Score=63.72 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=27.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|+++||||+|||++|+.+|+.++.+. ++..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~--is~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPH--ISTGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EECCccHH
Confidence 78999999999999999999998554 44555544
No 284
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.0014 Score=67.01 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=41.3
Q ss_pred CcccccC-CHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 92 TYSAIGG-LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 92 ~~~di~g-~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.|+.|.| .+.+++.++..+.. | ..+..+|||||+|+|||++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4777777 88888888887743 1 34567899999999999999999998754
No 285
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.69 E-value=0.0013 Score=63.67 Aligned_cols=40 Identities=28% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
...+..++||+|||||.++|.+|+.+|.+++..++++-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~ 70 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD 70 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc
Confidence 4467789999999999999999999999999999998765
No 286
>PRK09087 hypothetical protein; Validated
Probab=96.69 E-value=0.002 Score=62.14 Aligned_cols=50 Identities=26% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHHHHH-----HHHhhcCCcc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIF-----AVIFLHMPNL 180 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~~~f-----~~~f~~~d~~ 180 (515)
+.+.||||+|||||++++++++..+.. +++..++....+- ++++||++.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~l~iDDi~~~ 99 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAANAAAEGPVLIEDIDAG 99 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHHHhhhcCeEEEECCCCC
Confidence 348999999999999999999987655 4444333322211 3556667765
No 287
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0031 Score=62.36 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=59.0
Q ss_pred c-chhHHHHHHHhhhhhhCCeEEeee--c-eecccccchHHHH-HHHHH-----HHHhhCCeEEEechhhhhccCCC---
Q psy11253 420 G-IVTTITILFHEIPHEIGDFAILIH--A-IVDKYIGESARLI-REMFN-----YARDHQPCIIFMDEIDAIGGRRF--- 486 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~~~i~~~--~-~~s~~~g~~~~~i-~~~f~-----~A~~~~p~ilf~DE~D~~~~~r~--- 486 (515)
| -|+|||.+|+-+|.-+.+.+.... . --..|+||...|| -++.+ .+|+. ..||+|||||.|.++-.
T Consensus 104 GPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAe-rGIIyIDEIDKIarkSeN~S 182 (408)
T COG1219 104 GPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAE-RGIIYIDEIDKIARKSENPS 182 (408)
T ss_pred CCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHh-CCeEEEechhhhhccCCCCC
Confidence 8 799999999999999997555554 2 2457999996554 45544 44555 58999999999976541
Q ss_pred -CCCCCchHHHHHHHHHHHHHccCC
Q psy11253 487 -SEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 487 -~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
+.+-++ +-+.+ .||.-|+|.
T Consensus 183 ITRDVSG-EGVQQ---ALLKiiEGT 203 (408)
T COG1219 183 ITRDVSG-EGVQQ---ALLKIIEGT 203 (408)
T ss_pred cccccCc-hHHHH---HHHHHHcCc
Confidence 122222 23444 677777765
No 288
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.66 E-value=0.0024 Score=66.09 Aligned_cols=67 Identities=27% Similarity=0.381 Sum_probs=52.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchh
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTI 164 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~ 164 (515)
.+....++.|-+...+++++-+.. |. .....||++|++||||+++|++|.... +.||+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 455678899988888888777643 22 223569999999999999999988554 469999999998
Q ss_pred hH
Q psy11253 165 AI 166 (515)
Q Consensus 165 ~~ 166 (515)
..
T Consensus 142 ~e 143 (403)
T COG1221 142 SE 143 (403)
T ss_pred Cc
Confidence 76
No 289
>PLN02674 adenylate kinase
Probab=96.62 E-value=0.0014 Score=63.73 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
++..|+|.||||+|||+.|+.+|+.++. ..++..++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR 67 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLR 67 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHH
Confidence 3466999999999999999999999984 5566666654
No 290
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.60 E-value=0.0023 Score=65.93 Aligned_cols=48 Identities=27% Similarity=0.444 Sum_probs=40.5
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.++.+|.+..++.+++|.+. .+|||+.||||.|||++|+|+|..+...
T Consensus 243 k~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred EechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 45778888888888887763 3899999999999999999999888643
No 291
>PF13173 AAA_14: AAA domain
Probab=96.59 E-value=0.002 Score=56.27 Aligned_cols=38 Identities=34% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh--hcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~~~ 166 (515)
+-++++||+|||||++++.+++.+. ..++.++..+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4578999999999999999999887 7788888887665
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.57 E-value=0.002 Score=57.77 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=28.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
++++||||+|||++++.++.... .+++.++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 57899999999999999998884 5666666655444
No 293
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.57 E-value=0.0038 Score=67.89 Aligned_cols=77 Identities=26% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
....+|+++.|.....+.+.+.+.. +. .....||++|++||||+++|+++.... +.||+.+++..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~-------~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARK-------LA----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 3567899999998877776665532 11 124569999999999999999987654 369999999998
Q ss_pred hHHHHHHHHhh
Q psy11253 165 AIVLIFAVIFL 175 (515)
Q Consensus 165 ~~~~~f~~~f~ 175 (515)
....+-..+|-
T Consensus 267 ~~~~~e~elFG 277 (520)
T PRK10820 267 PDDVVESELFG 277 (520)
T ss_pred CHHHHHHHhcC
Confidence 76444445554
No 294
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.56 E-value=0.0013 Score=59.22 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=27.9
Q ss_pred eecCCCChhhHHHHHHHHHhhhcceEEecchhhHH
Q psy11253 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIV 167 (515)
Q Consensus 133 l~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~ 167 (515)
+.||||+|||++|+.||+.++ +..++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHH
Confidence 579999999999999999986 567777777653
No 295
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.55 E-value=0.0016 Score=56.26 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.9
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
|+|.|+||+|||++|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998
No 296
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0018 Score=60.03 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=29.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.|++.||||.|||++|+.||+. .++..++-.++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4789999999999999999999 6777777666554
No 297
>KOG1970|consensus
Probab=96.53 E-value=0.0016 Score=68.73 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=47.0
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCC-CCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPP-KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~-~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
..+++..+-+.+++.--.+-+.++++.+. +-..+.. +.+ +=+||.||+|||||++.+.+++++|..++.=+
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~----~~~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLK----QVAEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHH----HHHHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34455566677777766666666666653 1111111 112 23667999999999999999999998877643
No 298
>PRK04182 cytidylate kinase; Provisional
Probab=96.53 E-value=0.0016 Score=59.91 Aligned_cols=28 Identities=39% Similarity=0.697 Sum_probs=25.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|.+.|+||||||++|+.+|+.++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6789999999999999999999988765
No 299
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0026 Score=58.72 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.6
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc---ceEEecch
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRT 163 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~~~~ 163 (515)
++.-|.|.||||+|||++|+.++..+..+ .+.+++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 44568899999999999999999999743 44455443
No 300
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.49 E-value=0.0026 Score=60.81 Aligned_cols=22 Identities=50% Similarity=0.827 Sum_probs=16.4
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6789999999998666665555
No 301
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.49 E-value=0.0022 Score=64.57 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+-+++.||||||||++|+.+++.+. .++.++..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 3478899999999999999999983 45566665543
No 302
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.49 E-value=0.0012 Score=63.22 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=19.9
Q ss_pred CCCceeecCCCChhhHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVA 149 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia 149 (515)
|..+|+||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999986
No 303
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.0028 Score=67.52 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh-----hcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~~~~~~ 166 (515)
.++++||||||||||.+++++++++. ..++++++.++..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~ 184 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR 184 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 35799999999999999999999663 5778888888764
No 304
>PRK14526 adenylate kinase; Provisional
Probab=96.48 E-value=0.0019 Score=61.60 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=27.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
++|.||||+|||++++.+|..++.+. ++..++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~llr 36 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLFR 36 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChHHH
Confidence 78999999999999999999987554 55666543
No 305
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.46 E-value=0.0024 Score=58.84 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=51.4
Q ss_pred c-chhHHHHHHHhhhhhhCC----eEEeeeceeccccc--chHHHHHHHHHH------HHhhCCeEEEechhhhhccCCC
Q psy11253 420 G-IVTTITILFHEIPHEIGD----FAILIHAIVDKYIG--ESARLIREMFNY------ARDHQPCIIFMDEIDAIGGRRF 486 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~----~~i~~~~~~s~~~g--~~~~~i~~~f~~------A~~~~p~ilf~DE~D~~~~~r~ 486 (515)
| .|+|||.+++.+++.+.. ..+... ++.|.. +.+..+.++... ++.. .||||||||.+..+.
T Consensus 10 GpsGvGKT~la~~la~~l~~~~~~~~~~~d--~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidKa~~~~- 84 (171)
T PF07724_consen 10 GPSGVGKTELAKALAELLFVGSERPLIRID--MSEYSEGDDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDKAHPSN- 84 (171)
T ss_dssp SSTTSSHHHHHHHHHHHHT-SSCCEEEEEE--GGGHCSHHHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGGCSHTT-
T ss_pred CCCCCCHHHHHHHHHHHhccCCccchHHHh--hhcccccchHHhhhhhhhhcccceeeccch--hhhhhHHHhhccccc-
Confidence 7 899999999999999874 333332 333333 223334444332 2222 399999999998762
Q ss_pred CCCCCchHHHHHHHHHHHHHccC
Q psy11253 487 SEGTSADREIQRTLMELLNQMDG 509 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~lL~~md~ 509 (515)
..+.+..-..+.+.||+-||+
T Consensus 85 --~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 85 --SGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp --TTCSHHHHHHHHHHHHHHHHH
T ss_pred --cccchhhHHHHHHHHHHHhcc
Confidence 223333334666888887764
No 306
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.45 E-value=0.0026 Score=57.16 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=28.2
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+++.|+||+|||++|+.++..+ +.+.+.+++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 5789999999999999999998 5556666655543
No 307
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0046 Score=59.49 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+.-|.+.|+||+|||++|+.|+..+ +.+++.++.+++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3447789999999999999999999 5566666666653
No 308
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.43 E-value=0.0024 Score=56.12 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.+..-++|.|+.|+|||+++|.+++.++.+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344458899999999999999999999864
No 309
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.41 E-value=0.0021 Score=60.00 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=24.8
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+..+|||||||+|||++|+.+++.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4567999999999999999999998764
No 310
>PRK01184 hypothetical protein; Provisional
Probab=96.39 E-value=0.0021 Score=59.78 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=26.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
-|.|.||||+|||++++ ++++++.+++.. +++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~lr 36 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVIR 36 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHHH
Confidence 36789999999999998 788888776544 46554
No 311
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.39 E-value=0.0022 Score=58.51 Aligned_cols=28 Identities=36% Similarity=0.719 Sum_probs=25.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|.++|+||+|||++|+.+|+.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 6789999999999999999999988654
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.38 E-value=0.0029 Score=60.26 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=35.9
Q ss_pred cccc-chhHHHHHHHhhhhhhCCeEEeeec-eecccccchHHHHHHHHHHHHhhCCeEEEechhhhh
Q psy11253 417 KHVG-IVTTITILFHEIPHEIGDFAILIHA-IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAI 481 (515)
Q Consensus 417 ~~~G-~gtgkt~~~~~i~~~l~~~~i~~~~-~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~ 481 (515)
.++| ||+|||.+|+-|+.+++......+. .+.+ ..-+..++...+. ..|||||||-.+
T Consensus 54 lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~~dl~~il~~l~~--~~ILFIDEIHRl 113 (233)
T PF05496_consen 54 LFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----AGDLAAILTNLKE--GDILFIDEIHRL 113 (233)
T ss_dssp EEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----CHHHHHHHHT--T--T-EEEECTCCC-
T ss_pred EEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----HHHHHHHHHhcCC--CcEEEEechhhc
Confidence 3458 9999999999999999965544432 2222 2344455544433 479999999887
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.37 E-value=0.0029 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999996
No 314
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.34 E-value=0.0025 Score=58.03 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=20.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
|.++|+||||||++++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999988 77765
No 315
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0058 Score=68.08 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=56.2
Q ss_pred cccc-chhHHHHHHHhhhhhhC------------CeEEeeece--ecccccchHHHHHHHHHHHHhhCCeEEEechhhhh
Q psy11253 417 KHVG-IVTTITILFHEIPHEIG------------DFAILIHAI--VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAI 481 (515)
Q Consensus 417 ~~~G-~gtgkt~~~~~i~~~l~------------~~~i~~~~~--~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~ 481 (515)
+++| ||.|||.++.-+|..+. ++.+-+..+ -.+|.|+=|++++.+.+..++..+.|||||||-.|
T Consensus 195 vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 3459 99999999998887654 133333333 35799999999999999999998999999999999
Q ss_pred ccCCC
Q psy11253 482 GGRRF 486 (515)
Q Consensus 482 ~~~r~ 486 (515)
.+.-.
T Consensus 275 VGAG~ 279 (786)
T COG0542 275 VGAGA 279 (786)
T ss_pred cCCCc
Confidence 87764
No 316
>KOG0990|consensus
Probab=96.33 E-value=0.0025 Score=63.10 Aligned_cols=61 Identities=21% Similarity=0.121 Sum_probs=46.4
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.-.+++.++-...|+.+.++....+.+.... ..-...|+|||||||||+...+.|..+-.|
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~ 89 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSP 89 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCC
Confidence 3445677778888888888887777776422 122379999999999999999999887654
No 317
>PRK14529 adenylate kinase; Provisional
Probab=96.30 E-value=0.0026 Score=61.05 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=25.4
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|+|.||||+|||+.++.||+.++.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7889999999999999999999977653
No 318
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.28 E-value=0.0036 Score=58.81 Aligned_cols=36 Identities=36% Similarity=0.424 Sum_probs=27.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
++++||+|||||.+|-++|+++|.|++..+.-....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 578999999999999999999999999998776543
No 319
>KOG0738|consensus
Probab=96.27 E-value=0.0033 Score=63.72 Aligned_cols=137 Identities=30% Similarity=0.374 Sum_probs=118.9
Q ss_pred hcccCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhC--CeEEeeece
Q psy11253 375 VKAKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIG--DFAILIHAI 446 (515)
Q Consensus 375 ~~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~~~i~~~~~ 446 (515)
.....++..|+||. .+.+|......+--+|+.+.-.-.+.+|+++ | ||||||++|++++.|++ +|.|..+.+
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 34566788999995 5566666777777788888877788899887 8 99999999999999999 566666789
Q ss_pred ecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 447 ~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
.|||.|||||.||-+|++||..+|++|||||||+|+.+| +.++.++..+|+-++||.+|||..+.
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~R--G~s~EHEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQR--GGSSEHEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcC--CCccchhHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999 55577778889999999999999763
No 320
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.25 E-value=0.0033 Score=67.61 Aligned_cols=48 Identities=35% Similarity=0.583 Sum_probs=37.9
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
...++||.|.+..++.+.-++ .....++|+||||||||+++++++..+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 347899999888876655443 234569999999999999999999765
No 321
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.24 E-value=0.0041 Score=57.64 Aligned_cols=35 Identities=34% Similarity=0.275 Sum_probs=27.4
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+|++||||||||+++..++.+. |.+++.++..+-.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 6899999999999998876654 5677777765543
No 322
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.24 E-value=0.0066 Score=55.39 Aligned_cols=45 Identities=40% Similarity=0.568 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 98 g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
|.+++++.+.+.+.. + ..|..+|||||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-----------~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------G-RLPHALLFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------T-C--SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHc-----------C-CcceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 567777777777644 1 34667999999999999999999998753
No 323
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.22 E-value=0.0037 Score=61.20 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=26.4
Q ss_pred ceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
|+|.|+||+|||++|+.++..+. .+++.++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 67899999999999999999885 4455555443
No 324
>PLN02199 shikimate kinase
Probab=96.22 E-value=0.0032 Score=62.51 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
..+.|.|.|++|||||++++.+|+.++.+|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 3568999999999999999999999999987654
No 325
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.21 E-value=0.0045 Score=58.73 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=31.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+...+-++++||||||||+++..++... +-+.+.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 55555568999999999999999888654 45577777765
No 326
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.20 E-value=0.0021 Score=56.87 Aligned_cols=39 Identities=33% Similarity=0.546 Sum_probs=29.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh---cceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~~~ 165 (515)
....||++|+|||||+++|+++....+. +|+.+++..+.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~ 61 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP 61 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc
Confidence 3466999999999999999999988764 56666665544
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.16 E-value=0.005 Score=59.87 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=32.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH---hhhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ---LDANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~---~~~~~~~v~~~~~ 164 (515)
|+.+...+|++||||||||++|-.++.+ -|-+.+.++..+-
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 6777777999999999999998766544 3667888876653
No 328
>PLN02459 probable adenylate kinase
Probab=96.14 E-value=0.0042 Score=60.81 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.1
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.++|.||||+|||++|+.+|+.++ +..++..++..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR 65 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVR 65 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHH
Confidence 388899999999999999999887 55666677654
No 329
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.14 E-value=0.0085 Score=60.78 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=46.3
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhh-hcceEEecchh
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLD-ANFLKVVSRTI 164 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~-~~~~~v~~~~~ 164 (515)
+++.|+++.++++.+++.. ...|....+. ++|.||+|+|||++++.+-+-+. .+++.+.++-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~--------AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKS--------AAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccCcHHHHHHHHHHHHH--------HHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 4899999999999887744 2234444455 55799999999999999998775 45666644433
No 330
>KOG1051|consensus
Probab=96.13 E-value=0.0046 Score=69.79 Aligned_cols=64 Identities=28% Similarity=0.483 Sum_probs=50.3
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhccc---CCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGI---TPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~---~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+.|.|++++...|.++|.... .|. ++.-..||.||.|+|||-+|+++|..+ .-.|++++.+++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr--------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSR--------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhh--------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhh
Confidence 568899999999999986532 222 244458899999999999999999988 3569999998743
No 331
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.11 E-value=0.0053 Score=62.03 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=43.9
Q ss_pred cccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecc--cccchHHH----------HHHHHHHHHhhCCeEEEechhh
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDK--YIGESARL----------IREMFNYARDHQPCIIFMDEID 479 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~--~~g~~~~~----------i~~~f~~A~~~~p~ilf~DE~D 479 (515)
..++ | ||||||.+++.++..++. ..+.++..++. ++|...-. ....+-.|... ++++++||+|
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~-g~illlDEin 144 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH-NVALCFDEYD 144 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC-CeEEEechhh
Confidence 3445 8 999999999999999995 44444444444 45543211 11245566555 6999999999
Q ss_pred hh
Q psy11253 480 AI 481 (515)
Q Consensus 480 ~~ 481 (515)
..
T Consensus 145 ~a 146 (327)
T TIGR01650 145 AG 146 (327)
T ss_pred cc
Confidence 77
No 332
>PHA02774 E1; Provisional
Probab=96.11 E-value=0.0049 Score=66.27 Aligned_cols=38 Identities=32% Similarity=0.617 Sum_probs=29.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhhcceE-Eec
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK-VVS 161 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~-v~~ 161 (515)
+++..++++||||||||||++|-+|++.++-..+. ++.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 33334579999999999999999999998644433 553
No 333
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.11 E-value=0.005 Score=58.16 Aligned_cols=41 Identities=22% Similarity=0.439 Sum_probs=32.3
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHh-hhcceEEecchhhH
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSRTIAI 166 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~-~~~~~~v~~~~~~~ 166 (515)
..|.-+++.||||+|||++++.+...+ +..++.|+.+++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 346678899999999999999999998 78899999988765
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.10 E-value=0.005 Score=59.27 Aligned_cols=42 Identities=33% Similarity=0.389 Sum_probs=30.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchhh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIA 165 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~ 165 (515)
|+++..-+|++||||||||+++..++.+. +-+.+.++..+-.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 67777779999999999999988766433 6788888765543
No 335
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.07 E-value=0.013 Score=62.30 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=62.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
....+++||.|-.....++.+.+.. + -..+..||++|.+||||.++|++|-+.. +-||+.++|..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-------~----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-------I----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-------h----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3456888999988887777666532 1 1345779999999999999999999877 479999999998
Q ss_pred hHHHHHHHHhhc-CCcccCCC
Q psy11253 165 AIVLIFAVIFLH-MPNLCDSH 184 (515)
Q Consensus 165 ~~~~~f~~~f~~-~d~~~~~r 184 (515)
--..+=.-+|=- --|+..+.
T Consensus 308 Pe~LlESELFGye~GAFTGA~ 328 (560)
T COG3829 308 PETLLESELFGYEKGAFTGAS 328 (560)
T ss_pred CHHHHHHHHhCcCCccccccc
Confidence 764444445444 44444433
No 336
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.06 E-value=0.0088 Score=67.94 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=50.0
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee--ce---------ecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH--AI---------VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~--~~---------~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
+| ||+|||.+++.++..++...+.++ .. ...|.|.....+...+..+....| |+||||+|.+..+.
T Consensus 355 ~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~ 432 (784)
T PRK10787 355 VGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM 432 (784)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc
Confidence 48 999999999999999885443332 21 135888888888888887766554 78999999997543
No 337
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.04 E-value=0.016 Score=64.56 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=31.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIVLIFA 171 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~~~f~ 171 (515)
..++++||||||||+++..+..++ +.+++.+..+......+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e 219 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLE 219 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHH
Confidence 457899999999999877776664 5667777777666655543
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.0041 Score=57.94 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=24.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
++|.|+||+|||++|+-+|+.+......
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 7899999999999999999998755443
No 339
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.01 E-value=0.006 Score=56.21 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhh---cceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~~ 164 (515)
+.-+.+.|+||+|||++|+.++..+.. .+..+++..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 345778999999999999999998843 3555665544
No 340
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.01 E-value=0.0041 Score=61.36 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=22.1
Q ss_pred CceeecCCCChhhHHHHHHHHHhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
-++++||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 378999999999999999999876
No 341
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.00 E-value=0.005 Score=58.08 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLI 169 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~~~ 169 (515)
+-+++.|+||+|||++|+.+|.+++.++ +..+++.-..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~r~~~ 42 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYLREFL 42 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHHHHHH
Confidence 4578899999999999999999987643 56666654333
No 342
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.99 E-value=0.0066 Score=58.05 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=30.4
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+.+-++++||||||||++|..+|.+. +-+.+.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 55555558999999999999999998776 34566666543
No 343
>KOG0731|consensus
Probab=95.98 E-value=0.0046 Score=68.43 Aligned_cols=126 Identities=32% Similarity=0.434 Sum_probs=111.9
Q ss_pred hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHH
Q psy11253 389 VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNY 464 (515)
Q Consensus 389 ~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~ 464 (515)
.+..+..+..++.|......+|+.+|+|.++ | ||||||.+|+++|.|.++..+.+ +..+.+++|....+++.+|..
T Consensus 319 AK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ 398 (774)
T KOG0731|consen 319 AKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPL 398 (774)
T ss_pred HHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHH
Confidence 4667888999999999999999999999998 8 99999999999999999655544 589999999999999999999
Q ss_pred HHhhCCeEEEechhhhhccCCC-CCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 465 ARDHQPCIIFMDEIDAIGGRRF-SEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 465 A~~~~p~ilf~DE~D~~~~~r~-~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
||.++|||+|+||||++++.|+ ....+.+.+..+++||||.+||||...+
T Consensus 399 ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 399 ARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred hhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 9999999999999999999994 2344556667799999999999998764
No 344
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.91 E-value=0.0065 Score=59.94 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=29.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~ 162 (515)
|+.+..-++++||||||||++|-.+|... +-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56666669999999999999988876643 4566777655
No 345
>PRK08233 hypothetical protein; Provisional
Probab=95.91 E-value=0.0061 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
|.+.||||+|||++|+.++..++
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 56789999999999999999886
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.011 Score=62.51 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
..|.-++++||||+|||+++..+|..+. ..+..|+++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3567799999999999999999998874 4566666665543
No 347
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.91 E-value=0.0045 Score=57.75 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
-+.|.||+|+|||++++.++..++.+|
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 477899999999999999999887554
No 348
>PRK13808 adenylate kinase; Provisional
Probab=95.90 E-value=0.0053 Score=62.30 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|+|+||||+|||++++.||..++++. ++..++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~--is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--ecccHHH
Confidence 78999999999999999999998654 4445544
No 349
>KOG0743|consensus
Probab=95.89 E-value=0.0078 Score=62.42 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=71.8
Q ss_pred hcccccc----ccccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCe
Q psy11253 400 THNFTDG----LAIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPC 471 (515)
Q Consensus 400 lh~~~dg----~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ 471 (515)
++.|..| -..|.+.-.|-++ | |||||+.+..++|..|.. +.+.+++.. ..++ ++++.-.+... +
T Consensus 217 l~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----~n~d--Lr~LL~~t~~k--S 288 (457)
T KOG0743|consen 217 LDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----LDSD--LRHLLLATPNK--S 288 (457)
T ss_pred HHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----CcHH--HHHHHHhCCCC--c
Confidence 4444444 3488888888776 8 999999999999999984 444443322 2333 88888776554 8
Q ss_pred EEEechhhhhccCCCCCCCC--chH--HHHHHHHHHHHHccCCCCC
Q psy11253 472 IIFMDEIDAIGGRRFSEGTS--ADR--EIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 472 ilf~DE~D~~~~~r~~~~~~--~~~--~~~~~~~~lL~~md~~~~~ 513 (515)
||+|.+||+=+.-|...... ... ..+-+++.||+.+||+-+.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs 334 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS 334 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc
Confidence 99999999987755222211 111 1234678999999998653
No 350
>KOG3354|consensus
Probab=95.88 E-value=0.0055 Score=54.41 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=26.8
Q ss_pred CCCC-ceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 127 PPKG-CLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 127 ~~~g-iLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
+.++ +++.|++|||||+++++++++++.+|+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~ 41 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFI 41 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccc
Confidence 4454 667899999999999999999998876
No 351
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.88 E-value=0.0084 Score=58.07 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=32.2
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
|+..+.-++++||||||||+++..++.+. +.+.+.++..+-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 66666679999999999999999997553 567777776543
No 352
>KOG3907|consensus
Probab=95.87 E-value=0.0022 Score=60.45 Aligned_cols=161 Identities=22% Similarity=0.333 Sum_probs=93.8
Q ss_pred heeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCC------C-CCCCCCCC---------------CCCC
Q psy11253 243 ILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASK------E-HSHSHSHG---------------GSHE 300 (515)
Q Consensus 243 ~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~------~-~~~~~~~~---------------~~~~ 300 (515)
.+..+|+.. ...+..++...-+|+|.+.|+|+..++||.++..- . ....++.+ ..++
T Consensus 19 laG~IPL~~-~~se~rl~lvtv~GAgll~gtAl~viIpegv~sly~~~~~~~~~g~~~~~~~~~~~vIp~~i~a~v~~~~ 97 (303)
T KOG3907|consen 19 LAGSIPLYY-ILSEERLKLVTVLGAGLLVGTALTVIIPEGVSSLYVKIAVLSILGIGMLLGTSFMLVIPEGIKAEVEHDG 97 (303)
T ss_pred Hhcccceee-ecchhheEEEEeecccceecceeEEEecccHHHHhhhHHHHhhhccchhcccccceeccccceeeeeecC
Confidence 344456542 34555566666677888888888888888776532 0 00011000 0001
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhcccCC
Q psy11253 301 HSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAKTS 380 (515)
Q Consensus 301 ~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (515)
+ ..-....|+..+.||++++++|+.-... .|+..+ .+
T Consensus 98 ~--~~~~~~IG~slVLgfv~mLlVdqi~tv~----~h~~v~--~~----------------------------------- 134 (303)
T KOG3907|consen 98 H--VGVHALIGFSLVLGFVFMLLVDQIGTVY----VHSNVK--FQ----------------------------------- 134 (303)
T ss_pred C--cChheeeeHHHHHHHHHHHhhhccccEE----Eecccc--hh-----------------------------------
Confidence 1 1123456677788999999888763211 111110 00
Q ss_pred CCCCccchhhhhhhhhhhhhccccccccccccccccccc-cchhHHHHHHHhhhhhhCCeEEeeeceeccc
Q psy11253 381 SQSNDDIAVAGYLNLAADFTHNFTDGLAIGASYLAGKHV-GIVTTITILFHEIPHEIGDFAILIHAIVDKY 450 (515)
Q Consensus 381 ~~~~~~i~~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~ 450 (515)
+|+++. -..-..++.++|...||+|+|++...+..- -.-...++..|++|..++....++.+.+.||
T Consensus 135 --a~rs~i-n~~t~tlgLvVHaaaDGVALGaaattn~~svqiIVfvAImlHKaPAafgLvSfll~e~l~r~ 202 (303)
T KOG3907|consen 135 --AGRSII-NHITVTLGLVVHAAADGVALGAAATTNNDSVQIIVFVAIMLHKAPAAFGLVSFLLHENLDRW 202 (303)
T ss_pred --hhhhcc-ccceeEEEEEEeeccccceecccccccCCcEEEeehhHHHHhcccHHHHHHHHHHHhhhHHH
Confidence 011110 001245899999999999999777655443 4667789999999999998777766666665
No 353
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.87 E-value=0.0053 Score=56.08 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=19.9
Q ss_pred ecCCCChhhHHHHHHHHHhhhc
Q psy11253 134 YGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 134 ~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.||||||||+++++++..++..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~ 22 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAA 22 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCe
Confidence 4999999999999999999754
No 354
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.84 E-value=0.0087 Score=59.01 Aligned_cols=43 Identities=30% Similarity=0.406 Sum_probs=33.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|++..+-+|++|+||||||+++...+.+. |-|++.|+-.+-..
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~ 64 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPE 64 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHH
Confidence 56666679999999999999987776555 56688887666543
No 355
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.0089 Score=57.89 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=30.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
|+.+..-+++.|+||+|||+++-.+|.+. |-+.+.++..+-
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 56666668999999999999887776544 667777765543
No 356
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.82 E-value=0.0089 Score=57.47 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=30.2
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~ 162 (515)
|+....-++++||||+|||++|..+|.+. +.+.+.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55555558999999999999999998755 5566666665
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.80 E-value=0.0091 Score=56.72 Aligned_cols=28 Identities=43% Similarity=0.603 Sum_probs=23.2
Q ss_pred CCCC--ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 127 PPKG--CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 127 ~~~g--iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+++| +.+.||+|+|||+++++++..++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455 557999999999999999998763
No 358
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.80 E-value=0.0088 Score=54.02 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=30.4
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|.|.|.||+|||++|+++.+.+ +.+.+.++++.+..
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 7789999999999999999988 46788888887653
No 359
>PRK12338 hypothetical protein; Provisional
Probab=95.75 E-value=0.0066 Score=61.20 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVL 168 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~~~ 168 (515)
|.-+++.|+||||||++|+++|..++.+. +..++...+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~--~~~tD~~r~~ 42 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH--LIETDFIREV 42 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE--EccChHHHHH
Confidence 45688999999999999999999998653 5455655543
No 360
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.75 E-value=0.01 Score=57.39 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=28.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+..-++++||||||||++|..++... +.+.++++..+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45555668999999999999986555433 45667776443
No 361
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.75 E-value=0.0082 Score=55.35 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=32.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
=|+|.|||-+|||++||+|.+.+..||+.+..+++..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 3789999999999999999999999999999988765
No 362
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.68 E-value=0.016 Score=57.89 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=29.2
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
.|--|++.||+|||||++|+.+|..++.+. .++.+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~ 127 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSI 127 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHH
Confidence 345688999999999999999999998873 3444333
No 363
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.66 E-value=0.0078 Score=55.80 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=25.5
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|.++|+||+|||++++.+++ +|.++ ++++++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHH
Confidence 57899999999999999998 77654 4555544
No 364
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.65 E-value=0.011 Score=56.43 Aligned_cols=27 Identities=44% Similarity=0.818 Sum_probs=23.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+.+++|||+|+|||++++.+.+.+.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 356799999999999999999999884
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.65 E-value=0.019 Score=56.98 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=27.5
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
.+++-++|.||||+|||+++..+|..+. ..+..++++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3456688899999999999988887773 3444444443
No 366
>PTZ00202 tuzin; Provisional
Probab=95.65 E-value=0.021 Score=59.60 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
-.+..|-+....++.+++.. .....++=+.|.||+|||||++++.++..++.+.+.++...
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 44788999999999887742 22334455678999999999999999999998877777663
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.64 E-value=0.018 Score=60.79 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=43.6
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhh----CCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDH----QPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~----~p~ilf~DE~D~~~ 482 (515)
.| ||||||.+++.++..++...+.++.. ..+.+.++.+++.++.. .+.||||||+|.+.
T Consensus 42 ~GppGtGKTtLA~~ia~~~~~~~~~l~a~-----~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 42 WGPPGTGKTTLARIIAGATDAPFEALSAV-----TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEecc-----cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhC
Confidence 48 99999999999999988544444322 12356677788877532 46899999999874
No 368
>PRK13975 thymidylate kinase; Provisional
Probab=95.64 E-value=0.011 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.9
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
-|.+.||+|+|||++++.+|+.++..+
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 377899999999999999999998643
No 369
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.63 E-value=0.01 Score=49.97 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=27.6
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+.+...+.|.||+|||||++++++. ..-+.+.+.++..
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~~ 49 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNVE 49 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHHH
Confidence 3444568999999999999999987 2235566665543
No 370
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.61 E-value=0.014 Score=69.59 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=44.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
+...++++.|.+..++++.+.+.. +....+-+-++||+|+|||++|+++++.+...|
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 445678899999999998877632 223345577999999999999999998886554
No 371
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.60 E-value=0.012 Score=56.69 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=30.4
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+...++++||||||||+++..++.+. +-+.+.++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 66666779999999999999998776532 45667776644
No 372
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.60 E-value=0.019 Score=56.72 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=39.4
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+++++|-.+.+.+.+++++.. ++| +++.||+|+|||++.+++...+..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 45788898888888887776632 344 789999999999999999877653
No 373
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.59 E-value=0.012 Score=56.94 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=29.6
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---------hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---------~~~~~~v~~~~ 163 (515)
|+....-+.++||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56655568899999999999999998553 24556666554
No 374
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.59 E-value=0.0087 Score=55.42 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
-+.+.||+|||||+++++++..++.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4788999999999999999998876
No 375
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.58 E-value=0.014 Score=59.58 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=39.1
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
.| ||+|||.+++.++++++......+.-. -+....+..++...+ .++||||||||.+.
T Consensus 57 ~GppG~GKT~la~~ia~~l~~~~~~~~~~~----~~~~~~l~~~l~~l~--~~~vl~IDEi~~l~ 115 (328)
T PRK00080 57 YGPPGLGKTTLANIIANEMGVNIRITSGPA----LEKPGDLAAILTNLE--EGDVLFIDEIHRLS 115 (328)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeEEEeccc----ccChHHHHHHHHhcc--cCCEEEEecHhhcc
Confidence 38 999999999999999986433322110 122334555555432 46899999999984
No 376
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.57 E-value=0.028 Score=59.41 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=56.1
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHH
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIV 167 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~ 167 (515)
....++.|.....+++++.+.. .. ...-.||++|++||||.++||+|-+... .||+.|+|..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA-~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VA-PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4577888888888888887744 11 2345699999999999999999998886 49999999998764
Q ss_pred HHHHHHh
Q psy11253 168 LIFAVIF 174 (515)
Q Consensus 168 ~~f~~~f 174 (515)
.+-.-+|
T Consensus 207 l~ESELF 213 (464)
T COG2204 207 LLESELF 213 (464)
T ss_pred HHHHHhh
Confidence 4433333
No 377
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.54 E-value=0.0086 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3678999999999999999998753
No 378
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.54 E-value=0.0097 Score=54.64 Aligned_cols=22 Identities=45% Similarity=0.830 Sum_probs=20.0
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
++|.|+||+|||++.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999
No 379
>PF05729 NACHT: NACHT domain
Probab=95.54 E-value=0.009 Score=53.78 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
-++++|+||+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 367899999999999999998774
No 380
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.50 E-value=0.013 Score=54.45 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=25.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
|.+.|+||+|||++|+.++..++ .+...++..+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 56889999999999999999985 3444444443
No 381
>PRK06761 hypothetical protein; Provisional
Probab=95.49 E-value=0.012 Score=58.48 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=27.1
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
-+.+.||||+|||++++.+++.+....+.+..
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 47889999999999999999999876665543
No 382
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.49 E-value=0.0093 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
|.+.|+||||||++|+.+++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999987
No 383
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.47 E-value=0.01 Score=54.59 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=28.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
-+|+.||||+|||++|..++..++.+++++.-..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 3789999999999999999999887777655443
No 384
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.45 E-value=0.013 Score=59.30 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|+.+.+-+++|||||||||++|-.++.+. +-+.+.++...-..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 45555558899999999999988766554 45566776655433
No 385
>PRK04328 hypothetical protein; Provisional
Probab=95.44 E-value=0.014 Score=57.11 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=30.6
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH---hhhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ---LDANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~---~~~~~~~v~~~~~ 164 (515)
|+.+..-+|++||||||||.+|..++.+ .|-+.+.++..+-
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 5666666999999999999998876544 2567777776553
No 386
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.41 E-value=0.013 Score=63.16 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=32.9
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH----hhhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ----LDANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~----~~~~~~~v~~~~~ 164 (515)
|+.+.+.+|++||||||||++|..++.+ .+-+.++|+..+-
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 6777778999999999999999987543 2578888887643
No 387
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.41 E-value=0.02 Score=62.05 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+||+|+||||||++||++++.+..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r 262 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPR 262 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCc
Confidence 5999999999999999999997753
No 388
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.39 E-value=0.027 Score=59.47 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=46.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
-..+++++|......+.+++.+. .|.| +|+.||.|+|||++-.++.++++.+...|
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI 289 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNI 289 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceE
Confidence 46778999999999988888773 4577 55689999999999999999998776643
No 389
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.38 E-value=0.012 Score=56.43 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=27.0
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|-+.||+|||||++++.+|+.++.+++ +...+.
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~ 37 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMY 37 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--eCchHH
Confidence 668899999999999999999997766 344443
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.38 E-value=0.016 Score=53.25 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=27.5
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+++.||||+|||++++.+|..+ +..+..++.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 5789999999999999998876 4556667766543
No 391
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.37 E-value=0.03 Score=55.31 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=38.2
Q ss_pred c-chhHHHHHHHhhhhhhCCeEEee--e------ceecccccchHHHHHH--------------------HHHHHHhhCC
Q psy11253 420 G-IVTTITILFHEIPHEIGDFAILI--H------AIVDKYIGESARLIRE--------------------MFNYARDHQP 470 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~~~i~~--~------~~~s~~~g~~~~~i~~--------------------~f~~A~~~~p 470 (515)
| ||||||.+|++++..++...+.+ . ++++.|.|...+.+.. .+-.|.+. +
T Consensus 28 G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~-g 106 (262)
T TIGR02640 28 GPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE-G 106 (262)
T ss_pred cCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHc-C
Confidence 7 99999999999999888544433 2 3444454433222111 11223333 4
Q ss_pred eEEEechhhhh
Q psy11253 471 CIIFMDEIDAI 481 (515)
Q Consensus 471 ~ilf~DE~D~~ 481 (515)
.+|+|||+|.+
T Consensus 107 ~~lllDEi~r~ 117 (262)
T TIGR02640 107 FTLVYDEFTRS 117 (262)
T ss_pred CEEEEcchhhC
Confidence 79999999986
No 392
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.36 E-value=0.006 Score=63.50 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=46.0
Q ss_pred cccc-c-chhHHHHHHHhhhhhhCCeEEeee--cee-ccccc-chHHHHHHHHHHHHhhCCe
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIV-DKYIG-ESARLIREMFNYARDHQPC 471 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~-s~~~g-~~~~~i~~~f~~A~~~~p~ 471 (515)
..++ | ||+|||.+++.++..++...+.+. ... ..|+| +.+..++++|+.|....|+
T Consensus 52 ~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~ 113 (443)
T PRK05201 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVRE 113 (443)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHH
Confidence 4444 8 999999999999999997666664 344 36999 6699999999999888886
No 393
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.35 E-value=0.015 Score=54.83 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~ 165 (515)
+.-+.+.|+||+|||++++.++..+. ...+.+++.++.
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 44577899999999999999999873 446777776654
No 394
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.01 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.8
Q ss_pred ecCCCChhhHHHHHHHHHhhhcce
Q psy11253 134 YGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 134 ~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.|..|||||++++++|.+++++|+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fi 24 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFI 24 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCcee
Confidence 389999999999999999997765
No 395
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.33 E-value=0.012 Score=55.48 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=27.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|.++||||+|||++++.+++.+|.+++ +++++.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 678999999999999999998887776 555554
No 396
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.32 E-value=0.016 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-|.+.||||||||+++++|+..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477899999999999999999873
No 397
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.31 E-value=0.012 Score=56.76 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=25.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
-|.+.||||||||++++.+|+.++.+++.
T Consensus 6 ~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 6 VIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46789999999999999999999977653
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.30 E-value=0.03 Score=55.96 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh-----hcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~~~~ 164 (515)
++-++|.||+|+|||+++..+|..+. ..+..|+.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45588999999999999999988762 45555555543
No 399
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.29 E-value=0.017 Score=58.25 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee-ceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH-AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~-~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
.| ||+|||.+++.++++++....... ... .....+...+... ..+.||||||+|.+..
T Consensus 36 ~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~--~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 36 YGPPGLGKTTLAHIIANEMGVNLKITSGPAL-----EKPGDLAAILTNL--EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEeccchh-----cCchhHHHHHHhc--ccCCEEEEehHhhhCH
Confidence 38 999999999999999885322221 111 1112233333322 3468999999999853
No 400
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.29 E-value=0.012 Score=64.31 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+.|.|.|+||||||+++|.+|+.++.+|+.++-
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 348899999999999999999999999998764
No 401
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.013 Score=59.65 Aligned_cols=29 Identities=38% Similarity=0.494 Sum_probs=25.8
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999999999998764
No 402
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.28 E-value=0.025 Score=53.33 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=26.9
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~ 166 (515)
+-.++.||||||||++.+.++..+. ..++.+..+.-..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa 59 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAA 59 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHH
Confidence 4477899999999999998887664 4555555555444
No 403
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.27 E-value=0.016 Score=61.80 Aligned_cols=43 Identities=35% Similarity=0.486 Sum_probs=34.2
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|+.+..-+|++||||+|||+++..+|... +.+++++++.+-..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~ 121 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS 121 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH
Confidence 56666668999999999999999998766 46788888776443
No 404
>KOG2028|consensus
Probab=95.24 E-value=0.031 Score=56.40 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=46.3
Q ss_pred cccc-chhHHHHHHHhhhhhhCC---eEEeeeceecccccchHHHHHHHHHHHHhh-----CCeEEEechhhhhcc
Q psy11253 417 KHVG-IVTTITILFHEIPHEIGD---FAILIHAIVDKYIGESARLIREMFNYARDH-----QPCIIFMDEIDAIGG 483 (515)
Q Consensus 417 ~~~G-~gtgkt~~~~~i~~~l~~---~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~-----~p~ilf~DE~D~~~~ 483 (515)
++.| ||||||.+||-|+.-... ++|.++..- ...+-+|.+|+.|... ...|||||||-.|-.
T Consensus 166 IlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 166 ILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred EEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 3448 999999999999987653 355554433 3357899999999864 458999999987743
No 405
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.22 E-value=0.025 Score=57.42 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.++-++|.||||+|||+++..+|..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 345588999999999999999998774
No 406
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.21 E-value=0.013 Score=55.00 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
|.+.||||+|||++|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 457899999999999999999984
No 407
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.21 E-value=0.025 Score=60.89 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=39.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
...+++++|..+++.+.+++.+. .++| +++.||+|+|||++.+++.++++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 34577888877777777777653 3466 678999999999999988877753
No 408
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.21 E-value=0.017 Score=58.53 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=29.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
|++..+-+++|||||||||++|-.++.+. +.+.+.++...-
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~ 94 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 45544558899999999999998877554 456666666543
No 409
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.20 E-value=0.01 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
-+.|.||+|+|||++++.++.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 3788999999999999999997654
No 410
>PF13479 AAA_24: AAA domain
Probab=95.19 E-value=0.0094 Score=56.97 Aligned_cols=20 Identities=55% Similarity=0.997 Sum_probs=17.9
Q ss_pred CCceeecCCCChhhHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAV 148 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~i 148 (515)
-.+++|||||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45899999999999998887
No 411
>PLN02165 adenylate isopentenyltransferase
Probab=95.19 E-value=0.013 Score=59.38 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=25.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
-+.|.||+|+|||++|..+|..++..++..
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 478899999999999999999998755443
No 412
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.013 Score=59.69 Aligned_cols=30 Identities=40% Similarity=0.604 Sum_probs=26.1
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 346779999999999999999999988753
No 413
>PRK08356 hypothetical protein; Provisional
Probab=95.18 E-value=0.015 Score=54.79 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=24.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
-+.+.||||+|||++|+.++ +.+.+ .++..+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~~ 38 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSDP 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCCc
Confidence 37789999999999999996 45655 5555553
No 414
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.17 E-value=0.015 Score=54.96 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+-+.+.||+|+|||++++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345588999999999999999999876
No 415
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.16 E-value=0.021 Score=54.79 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=31.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
|+.+..-++++||||+|||.+|..++... +-+.+.++...-
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 56666668999999999999988877543 667777777663
No 416
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.15 E-value=0.022 Score=56.59 Aligned_cols=29 Identities=45% Similarity=0.657 Sum_probs=23.8
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
..+.+||.||+|||||++++..-..+.-.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~ 60 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSD 60 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTC
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCcc
Confidence 45779999999999999998877666533
No 417
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.11 E-value=0.014 Score=62.86 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=28.0
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.|.|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D 32 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD 32 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 3789999999999999999999999988654
No 418
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.10 E-value=0.022 Score=56.38 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=41.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.....+.++++-.....+.+.+.+.. .+...+.+++.||+|+|||++.+++...+...
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~-----------~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRS-----------AVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHH-----------CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccccccHhhccCchhhHHHHHHHHhh-----------ccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 33456778887776666666666643 12234679999999999999999999988766
No 419
>PRK10536 hypothetical protein; Provisional
Probab=95.10 E-value=0.016 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.-+++.||+|||||++|.++|.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999999984
No 420
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.06 E-value=0.023 Score=54.53 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
|+.+..-+.++||||||||+++..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56655568899999999999999998764
No 421
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.06 E-value=0.021 Score=57.79 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=29.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---------hcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---------~~~~~v~~~~ 163 (515)
|+....-+++|||||||||+++-.+|.... -..++|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 555555578999999999999999887643 2566666554
No 422
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.05 E-value=0.035 Score=47.67 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh-----hcceEEecchhhHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~~~~~~~~~f 170 (515)
++++++||||+|||.++-..+.++. ..++.+........+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~ 47 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVA 47 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHH
Confidence 4689999999999998888777775 44555555554444433
No 423
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.04 E-value=0.025 Score=49.15 Aligned_cols=63 Identities=25% Similarity=0.417 Sum_probs=40.0
Q ss_pred cc-chhHHHHHHHhhhhhh---CC--eEEeeeceecccccchHHH---HHHHHHHHHhhCCeEEEechhhhh
Q psy11253 419 VG-IVTTITILFHEIPHEI---GD--FAILIHAIVDKYIGESARL---IREMFNYARDHQPCIIFMDEIDAI 481 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l---~~--~~i~~~~~~s~~~g~~~~~---i~~~f~~A~~~~p~ilf~DE~D~~ 481 (515)
.| ||+|||.+++.+...+ +. +.+........+....... ....+..+....|.+|++||+|.+
T Consensus 25 ~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 25 YGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred ECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 37 9999999999999987 43 3333333333332222111 123344455567899999999988
No 424
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.04 E-value=0.023 Score=55.13 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=31.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~ 163 (515)
|+.+..-+++.||||+|||+++..++... +.+++.++...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 66666668999999999999988777655 67888877655
No 425
>KOG2680|consensus
Probab=95.03 E-value=0.016 Score=57.00 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh--hcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~~~ 166 (515)
..+.+|+.||||||||.+|-.+|+.+| .||..+.++++.|
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 467899999999999999999999998 6999999999986
No 426
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.01 E-value=0.011 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.3
Q ss_pred CCChhhHHHHHHHHHhhhcceEEe
Q psy11253 137 PGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 137 pGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
||||||++++.+|..++.||+.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D 24 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLD 24 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccC
Confidence 799999999999999999998764
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.00 E-value=0.018 Score=51.02 Aligned_cols=27 Identities=37% Similarity=0.677 Sum_probs=22.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
+.+.||+|+|||++++.++......+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~ 28 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFG 28 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccce
Confidence 567899999999999999998765543
No 428
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.99 E-value=0.016 Score=58.44 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.8
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+-+++.||+|+|||++|..+|++++.+++..+.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 457889999999999999999999877655544
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.98 E-value=0.021 Score=55.87 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=25.0
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
....++++||||||||++++.+++.....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 44569999999999999999999988653
No 430
>PRK06893 DNA replication initiation factor; Validated
Probab=94.97 E-value=0.036 Score=53.59 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=35.7
Q ss_pred cc-chhHHHHHHHhhhhhhC-----CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 419 VG-IVTTITILFHEIPHEIG-----DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
.| ||+|||.+++++++++. ...+.... ......++++.++ ...+|+|||++.+.+++
T Consensus 45 ~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~~~~~~~~--~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 45 WGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSPAVLENLE--QQDLVCLDDLQAVIGNE 107 (229)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhHHHHhhcc--cCCEEEEeChhhhcCCh
Confidence 37 99999999999998862 22222211 1111123344333 34799999999997544
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.047 Score=56.84 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh-------hcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~-------~~~~~v~~~~~~~ 166 (515)
|+-++|+||+|+|||+++.-+|..+. ..+..++.+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 56689999999999999999998763 4556666666544
No 432
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.96 E-value=0.014 Score=59.58 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=30.6
Q ss_pred cccCCCCC--ceeecCCCChhhHHHHHHHHHhhhc--ceEEecchhhH
Q psy11253 123 VGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTIAI 166 (515)
Q Consensus 123 ~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~~~ 166 (515)
+.+.-.+| +-|-||+|||||++-|+||.--... -|.+++.++..
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 34445566 6689999999999999999654322 45566655544
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.035 Score=57.25 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 98 g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
+.++....+.+.+...+.-+..+ .+.+++-++|.||+|+|||+++..+|..+ +.++..++.+..
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 34566666666665544333322 23455668899999999999999998766 334555555544
No 434
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.92 E-value=0.024 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.1
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
+.+.||||||||+++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999987
No 435
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.92 E-value=0.017 Score=59.58 Aligned_cols=30 Identities=43% Similarity=0.732 Sum_probs=25.9
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+|+|+.||||+|||||++.-..-+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 457999999999999999999888876653
No 436
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.92 E-value=0.025 Score=52.53 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh---cceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~~~ 165 (515)
++.-+.+.|+||+|||++|+.++..+.. ..+.+++..+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3455788999999999999999998853 34555555443
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.92 E-value=0.021 Score=53.32 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.....+++.||+|+|||++.++++....
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456799999999999999999998764
No 438
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.026 Score=50.75 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
.+..+.+.||||+|||+++.-+|..+.-.=+.|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 345688999999999999999999887553333
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.89 E-value=0.016 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
++-+.|.||||+|||++++.+.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4558899999999999999998875
No 440
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.89 E-value=0.02 Score=53.80 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=26.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-|.++|++|||||++++.+++ +|.++ ++++.+.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~--i~~D~~~ 36 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPV--IDADAIA 36 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEE--EEecHHH
Confidence 478999999999999999998 77654 5555544
No 441
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=94.88 E-value=0.041 Score=57.82 Aligned_cols=66 Identities=30% Similarity=0.409 Sum_probs=53.9
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
......|+|......++.+.|+.. . .....||+.|..||||.++||+|-... +.||+++||..+--
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-------A----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-------A----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-------h----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 557778999999988888887652 1 234569999999999999999998777 48999999998753
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.036 Score=57.28 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
..+-++|.||+|+|||+++..+|..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558899999999999999999875
No 443
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.84 E-value=0.018 Score=49.92 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=26.1
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
++..-|+|+|+=|.|||+++|+++..++..- .|+.+++
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF 50 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE-EVTSPTF 50 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S-----TTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC-CcCCCCe
Confidence 3344588999999999999999999998665 4444444
No 444
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.84 E-value=0.019 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+.-.+++.||+||||+++-|++|.-..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3444599999999999999999997553
No 445
>PRK10867 signal recognition particle protein; Provisional
Probab=94.83 E-value=0.042 Score=58.00 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~ 166 (515)
+|.-+++.||||+|||+++.-+|..+ +..+..|+++...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 45668999999999999877777655 55677788776655
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.015 Score=56.01 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=27.1
Q ss_pred hhhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhh
Q psy11253 119 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 119 ~~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.++...+.-.+| +.+.||+|||||++-+.||.-..
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555555566 78899999999999999997554
No 447
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.82 E-value=0.027 Score=57.26 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---------hcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---------~~~~~v~~~~ 163 (515)
|+....-++++||||||||.+|-.+|...- ...++|+..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 466555588999999999999999987642 3566666554
No 448
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.81 E-value=0.037 Score=60.68 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.1
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh----cceEEecchh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA----NFLKVVSRTI 164 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v~~~~~ 164 (515)
-|.|.|+||+|||++|+++|..++. +++.++++.+
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3788999999999999999999985 3555555543
No 449
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.81 E-value=0.05 Score=58.40 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=38.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIVLIFAVIFL 175 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~~~f~~~f~ 175 (515)
...+|+.|++|||||++|+++.... +.||+.+++..+....+-..+|-
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 4569999999999999999999886 47999999999866444444443
No 450
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.80 E-value=0.027 Score=55.97 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.9
Q ss_pred CCCCceeecCCCChhhHHHHHHHHH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
..+-|.++|++|+|||++|+.+++.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 3455889999999999999999987
No 451
>PRK07667 uridine kinase; Provisional
Probab=94.78 E-value=0.03 Score=52.60 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=25.5
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh---cceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~ 163 (515)
|.+.|+||+|||++|+.++..++. +...++..+
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 568999999999999999998864 444444444
No 452
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.029 Score=58.38 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=34.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh-----hcceEEecchhhHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v~~~~~~~~~~f 170 (515)
.+.++||||.|.|||.+.+|++++.. ..+++++..++..+.+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~ 160 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK 160 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH
Confidence 45699999999999999999999884 45777788777654333
No 453
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.75 E-value=0.052 Score=49.63 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=30.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
..+.+|+.+|+|+|||.++-.++.++..+++.+....
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~ 60 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELARKVLIVAPNI 60 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSH
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccccceeEecCHH
Confidence 3577999999999999999987877777888777663
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.74 E-value=0.019 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.4
Q ss_pred CCCceeecCCCChhhHHHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
++-++|.||||||||++++++.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 345778999999999999999854
No 455
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.73 E-value=0.03 Score=57.90 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=23.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
...|++||||||||++++.|++.....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 448999999999999999999988653
No 456
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.73 E-value=0.028 Score=58.28 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=32.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIA 165 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~ 165 (515)
|+.+..-++++||||+|||+++..+|.... .+.+++++.+-.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~ 122 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP 122 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH
Confidence 566666689999999999999998887653 467788776543
No 457
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.73 E-value=0.02 Score=64.72 Aligned_cols=28 Identities=36% Similarity=0.631 Sum_probs=24.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|.+-||||||||++|+.+|+.++..++.
T Consensus 4 i~I~G~~GsGKST~ak~la~~l~~~~~~ 31 (712)
T PRK09518 4 VAIDGPAGVGKSSVSRALAQYLGYAYLD 31 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 6789999999999999999999866554
No 458
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.077 Score=55.52 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~ 166 (515)
++-+++.||+|+|||+++..+|..+ +..+..++++...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 3448899999999999999999765 23455566655444
No 459
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.71 E-value=0.071 Score=55.75 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=40.0
Q ss_pred ccc-chhHHHHHHHhhhhhhC-----C--eEEeeece----------eccc-------ccch-HHHHHHHHHHHHh-hCC
Q psy11253 418 HVG-IVTTITILFHEIPHEIG-----D--FAILIHAI----------VDKY-------IGES-ARLIREMFNYARD-HQP 470 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l~-----~--~~i~~~~~----------~s~~-------~g~~-~~~i~~~f~~A~~-~~p 470 (515)
..| ||+|||.+++.+...+. . ..+.+... .... .|.+ .+.+..+++..+. ..|
T Consensus 60 I~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (394)
T PRK00411 60 IYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRV 139 (394)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 348 99999999999998762 2 23333211 1111 1212 3444555555443 346
Q ss_pred eEEEechhhhhc
Q psy11253 471 CIIFMDEIDAIG 482 (515)
Q Consensus 471 ~ilf~DE~D~~~ 482 (515)
.||+|||+|.+.
T Consensus 140 ~viviDE~d~l~ 151 (394)
T PRK00411 140 LIVALDDINYLF 151 (394)
T ss_pred EEEEECCHhHhh
Confidence 899999999998
No 460
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.036 Score=50.61 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
+.-+.|.|.+|.|||++|.++.+.+ |...+.++|+.+..
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 3457799999999999999999887 67788888888754
No 461
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.66 E-value=0.022 Score=60.11 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=26.1
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.|.-++++|+||||||++|..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36668999999999999999999999985
No 462
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.65 E-value=0.052 Score=57.10 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
+|+-|+|.||||+|||+++..+|..+ |..+..|+++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 35568899999999999999999877 55667777766544
No 463
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.029 Score=56.64 Aligned_cols=137 Identities=40% Similarity=0.653 Sum_probs=114.2
Q ss_pred CCCCCCccch----hhhhhhhhhhhhccccccc-cccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecc
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTDGL-AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDK 449 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~-alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~ 449 (515)
.+..+..+|+ -...+.....-+-.-||-+ .+|..+|+|+++ | ||||||++|+++|+..+..++.+ +.++.|
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 3455566664 1223333444444455555 499999999997 8 99999999999999998655444 589999
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~~ 515 (515)
|+||+.+.+|.+|++||..+||||||||||+|+++|...+.++++++.|++.+||+|||||+.+++
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 999999999999999999999999999999999999888889999999999999999999999875
No 464
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.65 E-value=0.026 Score=56.30 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=27.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
+++.||+|+|||.+|..+|.+++.+++.++.-.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q 34 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhh
Confidence 578999999999999999999988876665443
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.62 E-value=0.024 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.5
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+++.||+|+|||++.++++..+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 678999999999999999988764
No 466
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.60 E-value=0.026 Score=59.18 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
.+.|.+.|++|||||+++++||..+|.+++.--+-+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~ 254 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE 254 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHH
Confidence 467999999999999999999999998876544444
No 467
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.60 E-value=0.021 Score=53.83 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=25.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~ 164 (515)
|+-++|.||+|+|||+++--+|..+. ..+.-++.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 45688999999999998777776664 33444444433
No 468
>PRK09862 putative ATP-dependent protease; Provisional
Probab=94.60 E-value=0.058 Score=58.03 Aligned_cols=48 Identities=35% Similarity=0.470 Sum_probs=34.1
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
..+.++.|....++.+.-. ......++|+||||||||++++.++..+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 3667777766555443211 23345699999999999999999997664
No 469
>PRK04132 replication factor C small subunit; Provisional
Probab=94.59 E-value=0.019 Score=65.20 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=39.0
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHH
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLL 144 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~ 144 (515)
...+.++.+|+||.|.+..++.++.++.. .....++|+||||+||++.
T Consensus 9 ~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~-------------~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 9 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred HHHhhCCCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCCcccc
Confidence 35677889999999999999999999854 1223488999999999754
No 470
>PLN02840 tRNA dimethylallyltransferase
Probab=94.59 E-value=0.026 Score=59.01 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=28.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
-+.+.||+|+|||++|..+|..++.+++.++.-
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 377899999999999999999999887666543
No 471
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.55 E-value=0.025 Score=57.66 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
.+.+.+.|+||||||++++.++..++.+++.-.+.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~ 197 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE 197 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH
Confidence 457999999999999999999999999886555443
No 472
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.025 Score=57.94 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=27.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
..+.++||+||+|+||+++|+++|+.+.+.-
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999998754
No 473
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.069 Score=52.78 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCCC
Q psy11253 223 LQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEHS 302 (515)
Q Consensus 223 ~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~~ 302 (515)
++.|.++.+....--+...++...+... ++.++.++++|++|.|+..++..++||+.+....
T Consensus 180 ~~~l~~~~lsg~~~~lgavig~~~~~~~----~~~~l~~~la~aaG~mv~v~~~eliPea~~~~~~-------------- 241 (266)
T COG0428 180 LKALLVAVLSGLAEPLGAVIGAYLLGIS----SPLVLPFALAFAAGAMVYVVVDELLPEAKRHGGG-------------- 241 (266)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhc----hHHHHHHHHHHHhhcchhhhHHHHhhHHHhcCCC--------------
Confidence 3445555555555444444444433222 2689999999999999999999999999985210
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHH
Q psy11253 303 HSIADLSVGLWVLFGILAFLCVEKFV 328 (515)
Q Consensus 303 ~~~~~~~~g~~~l~G~~~~~~le~~i 328 (515)
.......+.+.|++++++++..+
T Consensus 242 ---~~~~~~~~~~~G~~~~~~l~~~l 264 (266)
T COG0428 242 ---SEKLATAGLFAGFLVMAVLDVLL 264 (266)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhh
Confidence 11234556789999999988765
No 474
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.49 E-value=0.026 Score=52.72 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=26.5
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|.++|+||||||++++.++...+.++ ++++++.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~ 34 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPV--IDADKIA 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHH
Confidence 57899999999999999999865655 4555554
No 475
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.051 Score=56.28 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 100 SEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 100 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
+..++.+.+.+...+..+..+ ...++-++|.||+|+|||+++..||..+. ..+..++.+.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 455566666554433332221 12356789999999999999999998774 2344444443
No 476
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.48 E-value=0.037 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.0
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
|.+.||+|+|||++++.+++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999984
No 477
>PRK04195 replication factor C large subunit; Provisional
Probab=94.48 E-value=0.077 Score=57.25 Aligned_cols=61 Identities=26% Similarity=0.298 Sum_probs=41.3
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhh------CCeEEEechhhhhcc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDH------QPCIIFMDEIDAIGG 483 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~------~p~ilf~DE~D~~~~ 483 (515)
.| ||+|||.++++++.+++...+.+...- . .+...|+.+...+... .+.||+|||+|.+..
T Consensus 45 ~GppG~GKTtla~ala~el~~~~ielnasd--~--r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 45 YGPPGVGKTSLAHALANDYGWEVIELNASD--Q--RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEEcccc--c--ccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 38 999999999999999986555443211 0 1223455544444332 468999999999965
No 478
>PRK13764 ATPase; Provisional
Probab=94.45 E-value=0.025 Score=61.85 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.9
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+++|+.||||+|||+++++++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999988864
No 479
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=94.43 E-value=0.027 Score=53.39 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.-|-|+|++|||||++++.++.++|.+++.
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 457799999999999999999989988543
No 480
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.033 Score=54.54 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=39.9
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee-ceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH-AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~-~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
+| ||+|||.+||-||.|++.-.-..+ ..+.| ..-+..++...... .|||||||-.+.
T Consensus 58 ~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-----~gDlaaiLt~Le~~--DVLFIDEIHrl~ 116 (332)
T COG2255 58 FGPPGLGKTTLAHIIANELGVNLKITSGPALEK-----PGDLAAILTNLEEG--DVLFIDEIHRLS 116 (332)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCeEecccccccC-----hhhHHHHHhcCCcC--CeEEEehhhhcC
Confidence 48 999999999999999997555444 22322 23344455444333 799999998884
No 481
>KOG3928|consensus
Probab=94.38 E-value=0.059 Score=55.33 Aligned_cols=38 Identities=39% Similarity=0.548 Sum_probs=31.1
Q ss_pred CCCCCceeecCCCChhhH-HHHHHHHHhhhcceEEecch
Q psy11253 126 TPPKGCLLYGPPGTGKTL-LARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~-~a~~ia~~~~~~~~~v~~~~ 163 (515)
.|-+.++|||+||||||. ++++++...+..++.+..+.
T Consensus 177 ~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~~wlIlhip~ 215 (461)
T KOG3928|consen 177 HPVKRFVLDGEPGTGKSIALAQAVHYAADQKWLILHIPY 215 (461)
T ss_pred CcceEEEEeCCCCCchhhHHHHHHHHHhcCCeEEEECCc
Confidence 345669999999999998 58888888888888876655
No 482
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.37 E-value=0.08 Score=56.37 Aligned_cols=72 Identities=26% Similarity=0.338 Sum_probs=50.2
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHHHHH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~~~f 170 (515)
.++.|.....+.+.+.+.. +. .....++++|++||||+++|+++..... .||+.+++..+....+-
T Consensus 139 ~~lig~s~~~~~l~~~i~~----------~a-~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK----------IA-PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred cceeecCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 3455655555555554422 11 2346699999999999999999987764 68999999998665554
Q ss_pred HHHhhc
Q psy11253 171 AVIFLH 176 (515)
Q Consensus 171 ~~~f~~ 176 (515)
..+|-.
T Consensus 208 ~~lfg~ 213 (445)
T TIGR02915 208 SELFGY 213 (445)
T ss_pred HHhcCC
Confidence 555554
No 483
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.36 E-value=0.026 Score=50.12 Aligned_cols=22 Identities=50% Similarity=0.804 Sum_probs=20.1
Q ss_pred CCceeecCCCChhhHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~ 150 (515)
|.++|.||.|||||+++++|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5689999999999999999875
No 484
>PRK04201 zinc transporter ZupT; Provisional
Probab=94.35 E-value=0.055 Score=53.52 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCCCCC
Q psy11253 222 TLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGSHEH 301 (515)
Q Consensus 222 ~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~~~~ 301 (515)
.++.|.+.++..+..-+...++.++. .....+.+...+++|++|.|+..++.+++||+.+..+
T Consensus 180 ~~~~~~~~~~~~l~~p~G~~~g~~~~---~~~~~~~~~~~~l~~aaG~~lyv~~~el~pea~~~~~-------------- 242 (265)
T PRK04201 180 KKKAFLYSFLSGLAEPLGAVLGYLLL---GPFISPVVMGAIFAAVAGIMVFISLDELLPAAKEYGP-------------- 242 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------
Confidence 34445544544444333333333222 1123566788999999999999999999999876421
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy11253 302 SHSIADLSVGLWVLFGILAFLCVEKFV 328 (515)
Q Consensus 302 ~~~~~~~~~g~~~l~G~~~~~~le~~i 328 (515)
.....+.+++|+.++++...++
T Consensus 243 -----~~~~~~~~~~G~~~m~~~~~~~ 264 (265)
T PRK04201 243 -----HHLPSYGLIAGMAVMALSLVLL 264 (265)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHh
Confidence 1234567788999888876553
No 485
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.34 E-value=0.063 Score=54.08 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=24.1
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
..+++++.||+|+|||++++++.....
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998874
No 486
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.31 E-value=0.03 Score=60.26 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=28.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
.-|.+.||+|||||++|+.+|+.++ +..++...+..
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~YR 320 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMYR 320 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCceeh
Confidence 3477899999999999999999997 45555555543
No 487
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.29 E-value=0.041 Score=59.31 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=33.7
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|+.+..-+|+.||||+|||+++-..+.+. +-+.++++..+-..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRA 304 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHH
Confidence 56666669999999999999988887755 55778887776554
No 488
>PRK09354 recA recombinase A; Provisional
Probab=94.25 E-value=0.042 Score=56.21 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=30.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
|+...+-+++|||||||||++|-.++.+. +-..++++...-..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 45544558899999999999988766543 55666666655433
No 489
>PRK14974 cell division protein FtsY; Provisional
Probab=94.24 E-value=0.061 Score=54.97 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
|+-++|.||||+|||+++..+|..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999888887764
No 490
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.057 Score=59.15 Aligned_cols=65 Identities=28% Similarity=0.344 Sum_probs=52.5
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeee--c---------eecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIH--A---------IVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~--~---------~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+| ||+|||.+++.||+.++--.+..+ . ...-|+|.-..+|=+..+.|....| |+++||||.+..+
T Consensus 356 VGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss 432 (782)
T COG0466 356 VGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS 432 (782)
T ss_pred ECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC
Confidence 38 999999999999999995444333 1 2234999999999999999999886 5678999999754
No 491
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.21 E-value=0.036 Score=56.99 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..+|++||||||||++++.+|+.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44899999999999999999998754
No 492
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.20 E-value=0.043 Score=64.81 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=34.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
.|++||-|-||.|||++..++|+.+|-.+++|+.++=
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ 1579 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ 1579 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc
Confidence 4889999999999999999999999999999998873
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.18 E-value=0.044 Score=54.19 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=31.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~ 163 (515)
|+.+..-+++.||||+|||+++..+|... +.+++.++...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 56666668899999999999988877664 56777777654
No 494
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.17 E-value=0.046 Score=50.23 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=27.0
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+|+.||||+|||++|..++...+.+.+++.-.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 57899999999999999998877777777443
No 495
>PRK10436 hypothetical protein; Provisional
Probab=94.14 E-value=0.081 Score=56.46 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=40.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+..+++++|..+.+.+.+++.+.. ++| +|+.||+|+|||++..++..+++.+
T Consensus 193 ~~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 193 QALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred CCCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 345788898888888887776633 455 7789999999999988887777544
No 496
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.14 E-value=0.041 Score=58.53 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=36.9
Q ss_pred c-chhHHHHHHHhhhhhhC-------CeEEeeeceecccccch-HHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 420 G-IVTTITILFHEIPHEIG-------DFAILIHAIVDKYIGES-ARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-------~~~i~~~~~~s~~~g~~-~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
| +|+|||.++++++.++. +..+.+...+..+...- ...+....+.. ...|.+|+|||++.+.+..
T Consensus 137 G~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 137 GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred cCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcCcH
Confidence 7 99999999999999853 12222223222221100 01122222222 2357899999999997543
No 497
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.13 E-value=0.053 Score=40.84 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.0
Q ss_pred CceeecCCCChhhHHHHHHHHHh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
-.+++||.|+|||++..|+...+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999887654
No 498
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.12 E-value=0.034 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
|.+.|++|||||++++.+++.++.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999998654
No 499
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=94.12 E-value=0.089 Score=56.17 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=40.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHHHHHHHHhhc
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIVLIFAVIFLH 176 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~~~f~~~f~~ 176 (515)
...+|++|++||||+++|+++.... +.||+.+++..+....+-..+|-.
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~ 217 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH 217 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence 3569999999999999999998764 479999999998776655666655
No 500
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.06 E-value=0.064 Score=52.62 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=49.6
Q ss_pred hhcccCCCCCceeecCCCChhhHHHHHHH------HHhhhcceEEecchhhHHHHHHHHhhc-CCcccCCCC
Q psy11253 121 QRVGITPPKGCLLYGPPGTGKTLLARAVA------SQLDANFLKVVSRTIAIVLIFAVIFLH-MPNLCDSHG 185 (515)
Q Consensus 121 ~~~g~~~~~giLl~GPpGtGKT~~a~~ia------~~~~~~~~~v~~~~~~~~~~f~~~f~~-~d~~~~~r~ 185 (515)
++..+.....+||.||.|.||+.+|+.|- +++.-+|+.|++.++.+......+|-- ..++...|+
T Consensus 201 erva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~ 272 (531)
T COG4650 201 ERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARE 272 (531)
T ss_pred HHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchh
Confidence 33445566679999999999999999875 455678999999999987766666666 555555554
Done!