Query psy11253
Match_columns 515
No_of_seqs 483 out of 4599
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:05:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 8.9E-45 3E-49 402.1 7.0 379 85-514 195-615 (806)
2 4b4t_J 26S protease regulatory 100.0 3.5E-38 1.2E-42 323.1 20.5 129 34-162 88-216 (405)
3 4b4t_I 26S protease regulatory 100.0 1.3E-37 4.3E-42 319.7 18.6 128 34-161 122-249 (437)
4 4b4t_L 26S protease subunit RP 100.0 1.9E-37 6.6E-42 322.5 16.5 128 34-161 121-248 (437)
5 4b4t_H 26S protease regulatory 100.0 5.3E-37 1.8E-41 318.0 14.7 128 34-161 149-276 (467)
6 4b4t_M 26S protease regulatory 100.0 2.8E-36 9.6E-41 313.5 15.2 128 34-161 121-248 (434)
7 4b4t_K 26S protease regulatory 100.0 1.2E-35 4.3E-40 308.5 19.0 128 34-161 112-239 (428)
8 1ypw_A Transitional endoplasmi 99.9 4.9E-29 1.7E-33 280.4 5.5 381 87-513 197-614 (806)
9 3cf2_A TER ATPase, transitiona 99.8 3.5E-20 1.2E-24 205.6 5.5 112 76-187 459-589 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 99.7 3.2E-17 1.1E-21 165.5 6.7 102 85-187 3-124 (322)
11 3cf0_A Transitional endoplasmi 99.7 3.4E-17 1.2E-21 163.8 5.3 104 84-187 5-127 (301)
12 2x8a_A Nuclear valosin-contain 99.6 4.5E-17 1.5E-21 160.6 4.5 100 87-186 3-121 (274)
13 3eie_A Vacuolar protein sortin 99.6 1.4E-16 4.7E-21 160.8 5.8 102 84-186 8-128 (322)
14 2qp9_X Vacuolar protein sortin 99.6 2.5E-16 8.6E-21 161.1 5.5 104 82-186 39-161 (355)
15 3h4m_A Proteasome-activating n 99.6 4.6E-16 1.6E-20 153.8 4.8 106 82-187 5-129 (285)
16 2zan_A Vacuolar protein sortin 99.6 1.4E-15 4.6E-20 160.2 7.3 107 80-187 120-246 (444)
17 2ce7_A Cell division protein F 99.5 5.7E-15 2E-19 155.7 7.2 98 88-186 10-126 (476)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.5 5.4E-15 1.8E-19 144.0 5.8 97 89-186 1-116 (262)
19 3hu3_A Transitional endoplasmi 99.5 6.5E-15 2.2E-19 156.3 4.8 99 88-186 198-315 (489)
20 3b9p_A CG5977-PA, isoform A; A 99.5 1.5E-14 5E-19 143.9 6.5 102 84-186 11-131 (297)
21 1lv7_A FTSH; alpha/beta domain 99.5 1.3E-14 4.5E-19 141.3 5.5 101 85-186 3-122 (257)
22 3vfd_A Spastin; ATPase, microt 99.5 1.6E-14 5.5E-19 149.5 6.4 114 72-186 93-225 (389)
23 3d8b_A Fidgetin-like protein 1 99.5 6.3E-15 2.2E-19 150.8 2.5 103 83-186 73-194 (357)
24 2r62_A Cell division protease 99.5 1.4E-14 4.9E-19 141.7 4.7 101 86-187 3-122 (268)
25 1xwi_A SKD1 protein; VPS4B, AA 99.5 1.5E-13 5.1E-18 138.5 11.1 131 379-512 6-145 (322)
26 1ypw_A Transitional endoplasmi 99.4 4.5E-14 1.6E-18 158.8 3.7 105 83-187 466-589 (806)
27 2dhr_A FTSH; AAA+ protein, hex 99.4 1.7E-13 5.9E-18 145.3 7.2 97 89-186 26-141 (499)
28 3eie_A Vacuolar protein sortin 99.4 5.7E-13 2E-17 134.2 8.8 131 378-511 11-149 (322)
29 2ce7_A Cell division protein F 99.4 4.8E-13 1.7E-17 141.0 8.0 123 390-512 25-151 (476)
30 1ixz_A ATP-dependent metallopr 99.3 6.3E-13 2.1E-17 129.1 5.1 100 85-185 7-125 (254)
31 2qp9_X Vacuolar protein sortin 99.3 1.6E-12 5.4E-17 132.9 8.1 132 378-512 44-183 (355)
32 3cf0_A Transitional endoplasmi 99.3 3.5E-13 1.2E-17 134.5 3.0 134 379-512 9-151 (301)
33 2zan_A Vacuolar protein sortin 99.3 2.4E-12 8.3E-17 135.4 8.5 133 377-512 126-267 (444)
34 2c9o_A RUVB-like 1; hexameric 99.3 1.6E-12 5.4E-17 137.3 5.1 95 87-189 30-147 (456)
35 1iy2_A ATP-dependent metallopr 99.2 3.9E-12 1.3E-16 125.3 5.4 100 85-185 31-149 (278)
36 2x8a_A Nuclear valosin-contain 99.2 1.1E-11 3.8E-16 121.9 8.1 130 380-512 5-143 (274)
37 3h4m_A Proteasome-activating n 99.2 2.4E-11 8.4E-16 119.7 10.4 105 409-513 46-154 (285)
38 1lv7_A FTSH; alpha/beta domain 99.2 3E-11 1E-15 117.4 10.5 105 409-513 40-148 (257)
39 3t15_A Ribulose bisphosphate c 99.2 1E-11 3.4E-16 123.4 4.6 101 410-511 32-140 (293)
40 2qz4_A Paraplegin; AAA+, SPG7, 99.2 3.6E-11 1.2E-15 116.7 8.4 105 408-512 33-142 (262)
41 1r6b_X CLPA protein; AAA+, N-t 99.2 2.9E-10 9.8E-15 127.5 16.8 85 89-186 181-296 (758)
42 2dhr_A FTSH; AAA+ protein, hex 99.2 4.3E-11 1.5E-15 126.9 8.6 122 391-512 41-166 (499)
43 3d8b_A Fidgetin-like protein 1 99.1 1.4E-10 4.7E-15 118.5 10.2 97 412-511 115-215 (357)
44 3t15_A Ribulose bisphosphate c 99.1 1.1E-11 3.7E-16 123.2 1.7 65 122-186 30-117 (293)
45 3pxi_A Negative regulator of g 99.1 2.5E-10 8.4E-15 128.1 12.6 61 88-161 174-244 (758)
46 3hu3_A Transitional endoplasmi 99.1 6.3E-11 2.2E-15 125.7 6.8 102 409-513 233-338 (489)
47 3b9p_A CG5977-PA, isoform A; A 99.1 3.3E-10 1.1E-14 112.3 9.8 96 414-512 54-153 (297)
48 3vfd_A Spastin; ATPase, microt 99.1 2E-10 6.9E-15 118.6 8.5 96 414-512 148-247 (389)
49 3syl_A Protein CBBX; photosynt 99.1 9.1E-11 3.1E-15 116.9 5.3 91 94-185 31-147 (309)
50 1g41_A Heat shock protein HSLU 99.0 5.2E-10 1.8E-14 116.4 6.7 73 94-166 15-88 (444)
51 3hws_A ATP-dependent CLP prote 98.9 3.3E-10 1.1E-14 115.9 3.7 93 95-187 16-135 (363)
52 2r62_A Cell division protease 98.9 8.5E-11 2.9E-15 114.7 -1.8 104 409-512 39-147 (268)
53 1ixz_A ATP-dependent metallopr 98.9 3.2E-09 1.1E-13 102.7 9.1 104 409-512 44-151 (254)
54 3cmw_A Protein RECA, recombina 98.8 3.6E-10 1.2E-14 133.7 -0.0 68 88-155 1014-1109(1706)
55 3pfi_A Holliday junction ATP-d 98.8 3.1E-09 1.1E-13 107.2 6.8 88 86-181 21-119 (338)
56 1ofh_A ATP-dependent HSL prote 98.8 2.2E-09 7.6E-14 106.5 5.0 72 94-165 15-87 (310)
57 1sxj_A Activator 1 95 kDa subu 98.8 4.3E-09 1.5E-13 112.7 5.5 86 82-167 27-116 (516)
58 2c9o_A RUVB-like 1; hexameric 98.7 1.6E-09 5.5E-14 114.2 1.5 78 410-488 59-145 (456)
59 1um8_A ATP-dependent CLP prote 98.7 5.3E-09 1.8E-13 107.3 5.2 71 95-165 22-109 (376)
60 1iy2_A ATP-dependent metallopr 98.7 2.7E-08 9.4E-13 97.6 9.8 104 409-512 68-175 (278)
61 3hws_A ATP-dependent CLP prote 98.6 1.3E-08 4.5E-13 103.9 4.7 96 415-510 52-157 (363)
62 1d2n_A N-ethylmaleimide-sensit 98.6 2.4E-08 8.2E-13 97.6 5.9 89 94-185 33-141 (272)
63 1jbk_A CLPB protein; beta barr 98.6 3.5E-08 1.2E-12 89.8 6.0 64 89-165 17-90 (195)
64 2p65_A Hypothetical protein PF 98.6 5.1E-08 1.7E-12 88.6 6.5 63 90-165 18-90 (187)
65 3n70_A Transport activator; si 98.6 3.2E-08 1.1E-12 87.4 4.6 60 95-166 2-64 (145)
66 3cmw_A Protein RECA, recombina 98.6 2.8E-08 9.5E-13 117.8 5.3 98 412-509 1078-1203(1706)
67 3co5_A Putative two-component 98.6 7.8E-09 2.7E-13 91.1 0.4 60 95-166 5-64 (143)
68 3uk6_A RUVB-like 2; hexameric 98.6 6.2E-08 2.1E-12 98.7 7.0 72 87-166 37-110 (368)
69 3m6a_A ATP-dependent protease 98.6 3.8E-08 1.3E-12 105.9 5.5 91 66-164 54-144 (543)
70 3pvs_A Replication-associated 98.6 3.9E-08 1.3E-12 103.2 5.2 83 88-183 20-121 (447)
71 1hqc_A RUVB; extended AAA-ATPa 98.5 9.1E-08 3.1E-12 95.6 7.5 72 87-166 5-76 (324)
72 3u61_B DNA polymerase accessor 98.5 1.2E-07 4.2E-12 94.9 6.5 70 85-166 17-86 (324)
73 3syl_A Protein CBBX; photosynt 98.4 2.2E-07 7.7E-12 92.1 6.9 83 420-510 74-166 (309)
74 2bjv_A PSP operon transcriptio 98.4 3.9E-07 1.3E-11 88.5 6.9 73 91-174 3-78 (265)
75 1d2n_A N-ethylmaleimide-sensit 98.3 8.6E-07 2.9E-11 86.4 8.6 93 414-511 64-162 (272)
76 2chg_A Replication factor C sm 98.3 7E-07 2.4E-11 83.1 7.6 68 86-166 9-81 (226)
77 2chq_A Replication factor C sm 98.3 6.6E-07 2.3E-11 88.8 6.8 67 85-164 8-79 (319)
78 3ec2_A DNA replication protein 98.3 1E-06 3.6E-11 80.2 6.7 71 89-166 5-80 (180)
79 2r44_A Uncharacterized protein 98.3 8.3E-07 2.8E-11 89.1 6.5 55 93-162 26-80 (331)
80 1sxj_D Activator 1 41 kDa subu 98.3 4.5E-07 1.5E-11 91.5 4.6 67 85-164 28-100 (353)
81 1iqp_A RFCS; clamp loader, ext 98.2 1.4E-06 4.8E-11 86.7 7.3 69 85-166 16-89 (327)
82 1l8q_A Chromosomal replication 98.2 2.1E-06 7.2E-11 85.9 8.4 68 88-166 5-78 (324)
83 1qvr_A CLPB protein; coiled co 98.2 1.1E-06 3.8E-11 99.6 6.3 85 89-186 165-281 (854)
84 3bos_A Putative DNA replicatio 98.2 2.8E-06 9.7E-11 80.3 8.1 67 87-166 21-93 (242)
85 1in4_A RUVB, holliday junction 98.2 2.8E-06 9.5E-11 85.6 8.0 68 89-164 20-87 (334)
86 4fcw_A Chaperone protein CLPB; 98.2 2.3E-06 7.9E-11 84.7 7.3 69 94-166 17-88 (311)
87 3pxg_A Negative regulator of g 98.2 1.2E-06 4E-11 92.6 5.4 62 88-162 174-245 (468)
88 1g8p_A Magnesium-chelatase 38 98.2 1.1E-06 3.6E-11 88.7 4.7 55 86-153 16-70 (350)
89 3te6_A Regulatory protein SIR3 98.2 1.7E-06 5.9E-11 86.2 6.1 70 98-176 24-104 (318)
90 1g41_A Heat shock protein HSLU 98.2 5.9E-07 2E-11 93.4 2.7 89 415-513 51-145 (444)
91 1sxj_B Activator 1 37 kDa subu 98.1 3.2E-06 1.1E-10 83.9 6.5 66 86-164 13-83 (323)
92 1ojl_A Transcriptional regulat 98.1 3.8E-06 1.3E-10 83.5 6.9 70 94-174 2-74 (304)
93 3pxi_A Negative regulator of g 98.1 4.1E-06 1.4E-10 93.8 7.6 65 94-166 491-562 (758)
94 1r6b_X CLPA protein; AAA+, N-t 98.1 3.6E-06 1.2E-10 94.1 7.1 64 94-165 458-525 (758)
95 2v1u_A Cell division control p 98.1 4.8E-06 1.6E-10 84.7 7.1 66 92-166 17-91 (387)
96 1um8_A ATP-dependent CLP prote 98.0 3.9E-06 1.3E-10 85.8 6.3 94 417-510 75-178 (376)
97 2wg5_A General control protein 98.0 3.3E-06 1.1E-10 70.4 4.6 53 34-86 56-108 (109)
98 2qby_B CDC6 homolog 3, cell di 98.0 3.7E-06 1.3E-10 85.7 6.0 63 94-165 20-93 (384)
99 2w58_A DNAI, primosome compone 98.0 7.2E-06 2.5E-10 75.9 7.2 39 128-166 54-95 (202)
100 1sxj_C Activator 1 40 kDa subu 98.0 6.6E-06 2.2E-10 82.9 6.8 66 85-163 16-86 (340)
101 1njg_A DNA polymerase III subu 98.0 5.8E-06 2E-10 77.7 6.0 58 86-155 15-72 (250)
102 2z4s_A Chromosomal replication 98.0 1.1E-05 3.9E-10 84.2 8.1 68 87-166 98-173 (440)
103 1ofh_A ATP-dependent HSL prote 97.9 7.1E-06 2.4E-10 80.9 5.9 94 415-510 51-155 (310)
104 1qvr_A CLPB protein; coiled co 97.9 9.4E-06 3.2E-10 92.0 6.1 66 93-166 557-629 (854)
105 1jr3_A DNA polymerase III subu 97.9 1.2E-05 3.9E-10 81.7 6.0 57 87-155 9-65 (373)
106 2qby_A CDC6 homolog 1, cell di 97.9 1.3E-05 4.6E-10 81.2 6.4 66 91-165 17-88 (386)
107 1sxj_E Activator 1 40 kDa subu 97.9 1E-05 3.4E-10 81.7 5.1 56 84-152 4-60 (354)
108 2qgz_A Helicase loader, putati 97.8 2.1E-05 7.1E-10 78.3 7.1 39 128-166 152-194 (308)
109 1fnn_A CDC6P, cell division co 97.8 2.3E-05 7.9E-10 79.8 6.5 65 93-166 16-86 (389)
110 2p65_A Hypothetical protein PF 97.8 2.4E-05 8.1E-10 70.6 5.5 68 419-486 49-132 (187)
111 1tue_A Replication protein E1; 97.7 1E-05 3.6E-10 74.9 2.5 30 125-154 55-84 (212)
112 1jbk_A CLPB protein; beta barr 97.7 3.6E-05 1.2E-09 69.5 5.7 67 419-485 49-131 (195)
113 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 1.9E-05 6.6E-10 83.6 3.5 52 95-161 23-76 (500)
114 1u0j_A DNA replication protein 97.6 2.9E-05 9.9E-10 75.1 3.1 26 128-153 104-129 (267)
115 1qhx_A CPT, protein (chloramph 97.5 4.1E-05 1.4E-09 69.1 3.4 37 129-165 4-40 (178)
116 3uk6_A RUVB-like 2; hexameric 97.5 0.00011 3.8E-09 74.3 6.9 82 415-510 71-216 (368)
117 3m6a_A ATP-dependent protease 97.5 1.5E-05 5.3E-10 85.5 0.2 82 419-511 114-207 (543)
118 3vaa_A Shikimate kinase, SK; s 97.4 6.6E-05 2.3E-09 69.4 3.6 35 125-159 22-56 (199)
119 3te6_A Regulatory protein SIR3 97.4 0.00019 6.4E-09 71.5 6.6 68 415-482 46-145 (318)
120 3trf_A Shikimate kinase, SK; a 97.4 7.6E-05 2.6E-09 67.8 3.4 32 128-159 5-36 (185)
121 3k1j_A LON protease, ATP-depen 97.4 0.00011 3.8E-09 79.9 5.1 55 86-155 33-87 (604)
122 2kjq_A DNAA-related protein; s 97.4 9.9E-05 3.4E-09 65.1 3.8 40 127-166 35-77 (149)
123 1svm_A Large T antigen; AAA+ f 97.3 8.6E-05 3E-09 75.7 3.6 82 100-182 132-230 (377)
124 2rhm_A Putative kinase; P-loop 97.3 0.00012 4.2E-09 66.7 3.3 33 126-158 3-35 (193)
125 3f9v_A Minichromosome maintena 97.2 7E-05 2.4E-09 81.2 1.4 31 128-158 327-357 (595)
126 2gno_A DNA polymerase III, gam 97.2 0.00022 7.5E-09 70.7 4.6 52 98-162 1-58 (305)
127 1via_A Shikimate kinase; struc 97.2 0.00017 5.9E-09 64.9 3.5 30 129-158 5-34 (175)
128 1zp6_A Hypothetical protein AT 97.2 0.00011 3.9E-09 66.9 2.3 41 125-165 6-46 (191)
129 1y63_A LMAJ004144AAA protein; 97.2 0.00012 4.1E-09 66.7 2.4 31 128-158 10-41 (184)
130 3iij_A Coilin-interacting nucl 97.2 0.00022 7.5E-09 64.5 4.0 33 127-159 10-42 (180)
131 2fna_A Conserved hypothetical 97.2 0.00046 1.6E-08 68.9 6.7 63 85-164 4-66 (357)
132 2iyv_A Shikimate kinase, SK; t 97.1 0.00025 8.6E-09 64.3 3.9 30 129-158 3-32 (184)
133 1w5s_A Origin recognition comp 97.1 0.0004 1.4E-08 71.1 5.6 64 92-163 20-96 (412)
134 3kb2_A SPBC2 prophage-derived 97.1 0.0002 6.9E-09 63.8 2.9 31 130-160 3-33 (173)
135 1gvn_B Zeta; postsegregational 97.1 0.00037 1.3E-08 68.4 5.0 37 128-164 33-69 (287)
136 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.5E-09 63.2 3.6 29 129-157 5-33 (173)
137 1zuh_A Shikimate kinase; alpha 97.1 0.00026 8.8E-09 63.2 3.3 30 129-158 8-37 (168)
138 2p5t_B PEZT; postsegregational 97.1 0.00034 1.2E-08 67.2 4.4 39 126-164 30-68 (253)
139 1a5t_A Delta prime, HOLB; zinc 97.1 0.00046 1.6E-08 69.2 5.3 45 99-155 7-51 (334)
140 2qen_A Walker-type ATPase; unk 97.0 0.00082 2.8E-08 66.9 6.8 63 85-164 3-65 (350)
141 2cdn_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 64.1 3.7 30 129-158 21-50 (201)
142 1aky_A Adenylate kinase; ATP:A 97.0 0.00037 1.3E-08 65.2 3.4 31 128-158 4-34 (220)
143 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00022 7.5E-09 70.7 1.9 38 124-161 119-156 (331)
144 1e6c_A Shikimate kinase; phosp 97.0 0.00044 1.5E-08 61.8 3.7 30 129-158 3-32 (173)
145 2ze6_A Isopentenyl transferase 96.9 0.00036 1.2E-08 67.1 3.0 30 131-160 4-33 (253)
146 3umf_A Adenylate kinase; rossm 96.9 0.00034 1.2E-08 65.7 2.7 39 126-166 27-65 (217)
147 2vli_A Antibiotic resistance p 96.9 0.00035 1.2E-08 63.0 2.5 29 129-157 6-34 (183)
148 2c95_A Adenylate kinase 1; tra 96.9 0.00047 1.6E-08 62.9 3.2 32 127-158 8-39 (196)
149 3cm0_A Adenylate kinase; ATP-b 96.9 0.00045 1.5E-08 62.6 3.0 28 130-157 6-33 (186)
150 3h43_A Proteasome-activating n 96.9 0.00023 7.7E-09 56.3 0.9 41 34-74 37-77 (85)
151 1tev_A UMP-CMP kinase; ploop, 96.9 0.00041 1.4E-08 63.1 2.7 36 128-165 3-38 (196)
152 1sxj_A Activator 1 95 kDa subu 96.9 0.00013 4.5E-09 77.7 -0.8 70 415-484 78-163 (516)
153 1ak2_A Adenylate kinase isoenz 96.8 0.00056 1.9E-08 64.7 3.6 31 128-158 16-46 (233)
154 3lw7_A Adenylate kinase relate 96.8 0.0005 1.7E-08 61.1 3.0 29 130-159 3-31 (179)
155 1qf9_A UMP/CMP kinase, protein 96.8 0.0005 1.7E-08 62.4 3.0 36 128-165 6-41 (194)
156 1kht_A Adenylate kinase; phosp 96.8 0.00055 1.9E-08 62.1 3.3 25 129-153 4-28 (192)
157 1zd8_A GTP:AMP phosphotransfer 96.8 0.00047 1.6E-08 64.9 2.9 37 127-165 6-42 (227)
158 3t61_A Gluconokinase; PSI-biol 96.8 0.00065 2.2E-08 62.6 3.7 35 128-164 18-52 (202)
159 3pvs_A Replication-associated 96.8 0.0012 4.2E-08 68.9 6.2 60 419-483 56-120 (447)
160 3sr0_A Adenylate kinase; phosp 96.8 0.00055 1.9E-08 63.8 3.2 34 131-166 3-36 (206)
161 2pt5_A Shikimate kinase, SK; a 96.8 0.00063 2.1E-08 60.5 3.4 28 131-158 3-30 (168)
162 1ly1_A Polynucleotide kinase; 96.8 0.0004 1.4E-08 62.4 2.1 28 129-156 3-31 (181)
163 3be4_A Adenylate kinase; malar 96.8 0.00053 1.8E-08 64.1 3.0 30 129-158 6-35 (217)
164 1zak_A Adenylate kinase; ATP:A 96.8 0.00057 1.9E-08 64.0 3.1 31 127-157 4-34 (222)
165 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00048 1.6E-08 69.3 2.6 31 130-160 26-56 (359)
166 2bwj_A Adenylate kinase 5; pho 96.8 0.00062 2.1E-08 62.2 3.1 36 128-165 12-47 (199)
167 1l8q_A Chromosomal replication 96.7 0.0007 2.4E-08 67.3 3.5 65 420-485 44-114 (324)
168 2pez_A Bifunctional 3'-phospho 96.7 0.00073 2.5E-08 60.9 3.3 36 129-164 6-44 (179)
169 3dl0_A Adenylate kinase; phosp 96.7 0.00069 2.4E-08 63.1 3.2 34 131-166 3-36 (216)
170 3fb4_A Adenylate kinase; psych 96.7 0.00076 2.6E-08 62.7 3.4 33 131-165 3-35 (216)
171 3cmu_A Protein RECA, recombina 96.7 0.00083 2.8E-08 81.0 4.3 96 416-511 1429-1550(2050)
172 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00075 2.6E-08 66.9 3.3 65 419-485 129-198 (331)
173 4b4t_J 26S protease regulatory 96.7 0.00087 3E-08 68.6 3.8 139 376-514 139-286 (405)
174 3tlx_A Adenylate kinase 2; str 96.7 0.00075 2.6E-08 64.4 3.0 37 127-165 28-64 (243)
175 1ukz_A Uridylate kinase; trans 96.6 0.00076 2.6E-08 62.1 2.8 30 129-158 16-45 (203)
176 3pxg_A Negative regulator of g 96.6 0.00076 2.6E-08 70.9 3.1 57 419-476 207-274 (468)
177 3pfi_A Holliday junction ATP-d 96.6 0.0021 7.2E-08 64.1 6.2 61 416-482 57-119 (338)
178 4eun_A Thermoresistant glucoki 96.6 0.00097 3.3E-08 61.4 3.4 35 128-164 29-63 (200)
179 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0009 3.1E-08 64.5 3.2 35 129-163 5-42 (260)
180 1knq_A Gluconate kinase; ALFA/ 96.6 0.001 3.5E-08 59.7 3.3 33 130-164 10-42 (175)
181 1nks_A Adenylate kinase; therm 96.6 0.00091 3.1E-08 60.6 2.8 36 130-165 3-41 (194)
182 2wwf_A Thymidilate kinase, put 96.6 0.00098 3.4E-08 61.6 3.0 32 128-159 10-41 (212)
183 1e4v_A Adenylate kinase; trans 96.6 0.001 3.5E-08 61.9 3.2 33 131-165 3-35 (214)
184 3uie_A Adenylyl-sulfate kinase 96.6 0.0012 4E-08 60.8 3.5 38 127-164 24-64 (200)
185 2v54_A DTMP kinase, thymidylat 96.5 0.0015 5.2E-08 59.9 4.1 34 128-161 4-38 (204)
186 2pbr_A DTMP kinase, thymidylat 96.5 0.0015 5E-08 59.3 3.9 30 131-160 3-35 (195)
187 4b4t_I 26S protease regulatory 96.5 0.0015 5.1E-08 67.2 4.2 138 377-514 174-320 (437)
188 3n70_A Transport activator; si 96.5 0.00095 3.2E-08 58.2 2.4 57 417-482 27-89 (145)
189 3crm_A TRNA delta(2)-isopenten 96.5 0.00097 3.3E-08 66.3 2.7 33 129-161 6-38 (323)
190 3co5_A Putative two-component 96.5 0.00051 1.8E-08 59.8 0.6 57 416-482 29-88 (143)
191 2xb4_A Adenylate kinase; ATP-b 96.5 0.0013 4.3E-08 61.8 3.3 32 131-164 3-34 (223)
192 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.5E-08 60.8 3.3 32 128-159 9-40 (215)
193 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4E-08 63.5 2.9 31 128-158 48-78 (250)
194 2cvh_A DNA repair and recombin 96.4 0.0019 6.6E-08 59.8 4.2 40 124-163 16-55 (220)
195 4b4t_H 26S protease regulatory 96.4 0.0016 5.6E-08 67.5 3.9 137 378-514 202-347 (467)
196 1cke_A CK, MSSA, protein (cyti 96.4 0.0015 5.1E-08 61.1 3.3 35 129-165 6-40 (227)
197 2jaq_A Deoxyguanosine kinase; 96.4 0.0014 4.8E-08 60.0 2.9 27 131-157 3-29 (205)
198 4b4t_L 26S protease subunit RP 96.4 0.0017 5.9E-08 67.2 3.8 137 378-514 174-319 (437)
199 2v1u_A Cell division control p 96.4 0.0043 1.5E-07 62.5 6.6 83 419-510 50-162 (387)
200 2z0h_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 58.7 3.7 29 131-159 3-34 (197)
201 4b4t_K 26S protease regulatory 96.4 0.0019 6.5E-08 66.8 3.9 137 378-514 165-310 (428)
202 3r20_A Cytidylate kinase; stru 96.3 0.002 6.7E-08 61.2 3.3 37 128-166 9-45 (233)
203 2if2_A Dephospho-COA kinase; a 96.3 0.0017 5.9E-08 59.6 2.9 28 130-158 3-30 (204)
204 4b4t_M 26S protease regulatory 96.3 0.0022 7.4E-08 66.5 3.9 137 378-514 174-319 (434)
205 2bbw_A Adenylate kinase 4, AK4 96.3 0.0022 7.7E-08 61.0 3.6 30 128-157 27-56 (246)
206 2z4s_A Chromosomal replication 96.3 0.0017 5.8E-08 67.7 2.9 67 419-485 136-210 (440)
207 3ake_A Cytidylate kinase; CMP 96.2 0.0023 7.8E-08 58.8 3.4 34 130-165 4-37 (208)
208 4akg_A Glutathione S-transfera 96.2 0.0011 3.6E-08 82.6 1.4 58 419-478 1615-1676(2695)
209 1uj2_A Uridine-cytidine kinase 96.2 0.0028 9.7E-08 60.6 4.1 29 129-157 23-51 (252)
210 1jjv_A Dephospho-COA kinase; P 96.2 0.0021 7E-08 59.3 2.7 31 131-164 5-35 (206)
211 2yvu_A Probable adenylyl-sulfa 96.1 0.003 1E-07 57.2 3.5 35 129-163 14-51 (186)
212 1m7g_A Adenylylsulfate kinase; 96.1 0.0027 9.1E-08 58.9 3.2 37 127-163 24-64 (211)
213 2plr_A DTMP kinase, probable t 96.1 0.0037 1.3E-07 57.5 4.1 27 129-155 5-31 (213)
214 2grj_A Dephospho-COA kinase; T 96.1 0.0028 9.7E-08 58.2 3.2 33 131-165 15-47 (192)
215 1uf9_A TT1252 protein; P-loop, 96.1 0.003 1E-07 57.7 3.3 33 129-164 9-41 (203)
216 1n0w_A DNA repair protein RAD5 96.0 0.0031 1E-07 59.4 3.3 40 124-163 20-68 (243)
217 4b3f_X DNA-binding protein smu 96.0 0.011 3.9E-07 64.5 7.9 66 90-170 182-250 (646)
218 3u61_B DNA polymerase accessor 96.0 0.008 2.7E-07 59.5 6.1 58 420-482 55-118 (324)
219 3upu_A ATP-dependent DNA helic 95.9 0.0057 1.9E-07 64.0 5.1 69 84-165 14-86 (459)
220 1q3t_A Cytidylate kinase; nucl 95.9 0.0041 1.4E-07 58.7 3.5 35 129-165 17-51 (236)
221 2h92_A Cytidylate kinase; ross 95.9 0.0044 1.5E-07 57.6 3.6 30 129-158 4-33 (219)
222 1ye8_A Protein THEP1, hypothet 95.9 0.0049 1.7E-07 55.8 3.8 26 131-156 3-28 (178)
223 1ny5_A Transcriptional regulat 95.9 0.014 5E-07 59.5 7.7 48 128-175 160-210 (387)
224 4akg_A Glutathione S-transfera 95.9 0.0033 1.1E-07 78.2 3.3 39 127-165 644-682 (2695)
225 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0038 1.3E-07 58.2 2.9 40 124-163 19-61 (235)
226 3hr8_A Protein RECA; alpha and 95.8 0.004 1.4E-07 62.8 3.2 41 124-164 57-100 (356)
227 4e22_A Cytidylate kinase; P-lo 95.8 0.0047 1.6E-07 59.1 3.4 34 130-165 29-62 (252)
228 2qor_A Guanylate kinase; phosp 95.8 0.0051 1.7E-07 56.7 3.4 28 126-153 10-37 (204)
229 2j41_A Guanylate kinase; GMP, 95.8 0.0041 1.4E-07 57.0 2.7 27 126-152 4-30 (207)
230 2z43_A DNA repair and recombin 95.8 0.0049 1.7E-07 61.4 3.5 40 124-163 103-151 (324)
231 3fdi_A Uncharacterized protein 95.7 0.0045 1.6E-07 57.2 2.9 29 130-158 8-36 (201)
232 2qt1_A Nicotinamide riboside k 95.7 0.0034 1.2E-07 57.9 2.0 27 129-155 22-49 (207)
233 1vht_A Dephospho-COA kinase; s 95.7 0.0045 1.5E-07 57.6 2.9 29 129-158 5-33 (218)
234 2qby_A CDC6 homolog 1, cell di 95.7 0.022 7.5E-07 57.1 8.1 67 419-485 51-144 (386)
235 3cmu_A Protein RECA, recombina 95.7 0.0059 2E-07 73.8 4.3 82 85-166 669-773 (2050)
236 3a8t_A Adenylate isopentenyltr 95.7 0.0032 1.1E-07 62.9 1.7 34 129-162 41-74 (339)
237 4fcw_A Chaperone protein CLPB; 95.7 0.014 4.9E-07 57.0 6.4 60 420-481 54-131 (311)
238 2dr3_A UPF0273 protein PH0284; 95.6 0.0066 2.3E-07 57.1 3.8 41 124-164 19-62 (247)
239 4a74_A DNA repair and recombin 95.6 0.0059 2E-07 56.8 3.2 30 124-153 21-50 (231)
240 1ltq_A Polynucleotide kinase; 95.6 0.0043 1.5E-07 60.7 2.3 33 129-163 3-36 (301)
241 3foz_A TRNA delta(2)-isopenten 95.5 0.0049 1.7E-07 60.7 2.5 36 128-163 10-45 (316)
242 1u94_A RECA protein, recombina 95.5 0.0076 2.6E-07 60.8 3.9 40 124-163 59-101 (356)
243 2zr9_A Protein RECA, recombina 95.5 0.0076 2.6E-07 60.7 3.7 40 124-163 57-99 (349)
244 2bdt_A BH3686; alpha-beta prot 95.5 0.0061 2.1E-07 55.2 2.7 32 131-163 5-36 (189)
245 3c8u_A Fructokinase; YP_612366 95.4 0.01 3.4E-07 54.9 4.1 25 129-153 23-47 (208)
246 1rz3_A Hypothetical protein rb 95.4 0.019 6.6E-07 52.6 6.0 24 130-153 24-47 (201)
247 1v5w_A DMC1, meiotic recombina 95.4 0.0082 2.8E-07 60.3 3.5 40 124-163 118-166 (343)
248 2f6r_A COA synthase, bifunctio 95.3 0.0066 2.3E-07 59.2 2.7 32 130-164 77-108 (281)
249 3gmt_A Adenylate kinase; ssgci 95.3 0.0077 2.6E-07 56.8 3.0 34 131-166 11-44 (230)
250 2qby_B CDC6 homolog 3, cell di 95.3 0.0093 3.2E-07 60.2 3.8 64 420-484 52-148 (384)
251 2ehv_A Hypothetical protein PH 95.3 0.0067 2.3E-07 57.3 2.5 40 124-163 26-69 (251)
252 3d3q_A TRNA delta(2)-isopenten 95.3 0.0075 2.6E-07 60.3 2.8 29 130-158 9-37 (340)
253 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0029 9.8E-08 66.9 -0.2 61 420-481 48-121 (500)
254 1kgd_A CASK, peripheral plasma 95.2 0.0087 3E-07 54.0 3.0 25 129-153 6-30 (180)
255 3zvl_A Bifunctional polynucleo 95.2 0.006 2E-07 63.0 2.1 30 128-157 258-287 (416)
256 2zts_A Putative uncharacterize 95.2 0.011 3.9E-07 55.6 3.9 40 124-163 26-69 (251)
257 3exa_A TRNA delta(2)-isopenten 95.2 0.0087 3E-07 59.0 2.9 31 130-160 5-35 (322)
258 1xp8_A RECA protein, recombina 95.2 0.011 3.8E-07 59.9 3.8 40 124-163 70-112 (366)
259 3tr0_A Guanylate kinase, GMP k 95.2 0.012 3.9E-07 53.9 3.6 24 129-152 8-31 (205)
260 1x6v_B Bifunctional 3'-phospho 95.1 0.01 3.6E-07 64.1 3.6 36 129-164 53-91 (630)
261 3io5_A Recombination and repai 95.1 0.011 3.8E-07 58.3 3.4 39 124-163 25-68 (333)
262 3asz_A Uridine kinase; cytidin 95.1 0.0095 3.3E-07 54.9 2.8 25 129-153 7-31 (211)
263 3hdt_A Putative kinase; struct 95.1 0.0099 3.4E-07 55.9 2.9 29 130-158 16-44 (223)
264 3tau_A Guanylate kinase, GMP k 95.1 0.0099 3.4E-07 55.0 2.8 25 129-153 9-33 (208)
265 1nlf_A Regulatory protein REPA 95.0 0.011 3.9E-07 57.2 3.3 29 124-152 26-54 (279)
266 3b9q_A Chloroplast SRP recepto 95.0 0.016 5.3E-07 57.2 4.3 54 100-153 70-125 (302)
267 2r2a_A Uncharacterized protein 95.0 0.014 4.6E-07 53.9 3.6 35 130-164 7-50 (199)
268 1pzn_A RAD51, DNA repair and r 95.0 0.012 4E-07 59.3 3.3 41 124-164 127-176 (349)
269 2qmh_A HPR kinase/phosphorylas 95.0 0.006 2E-07 56.1 1.0 30 128-158 34-63 (205)
270 1vma_A Cell division protein F 94.8 0.018 6.2E-07 56.8 4.2 28 126-153 102-129 (306)
271 2jeo_A Uridine-cytidine kinase 94.8 0.015 5.2E-07 55.1 3.5 36 121-156 16-53 (245)
272 1hqc_A RUVB; extended AAA-ATPa 94.8 0.018 6.1E-07 56.7 4.1 61 416-482 40-103 (324)
273 3dzd_A Transcriptional regulat 94.8 0.036 1.2E-06 56.1 6.3 49 128-176 152-202 (368)
274 1lvg_A Guanylate kinase, GMP k 94.8 0.015 5E-07 53.4 3.2 27 127-153 3-29 (198)
275 2i1q_A DNA repair and recombin 94.8 0.013 4.5E-07 58.0 3.0 28 124-151 94-121 (322)
276 2og2_A Putative signal recogni 94.7 0.019 6.5E-07 57.9 4.1 28 126-153 155-182 (359)
277 1cr0_A DNA primase/helicase; R 94.7 0.015 5E-07 56.8 3.2 40 123-162 30-73 (296)
278 3lda_A DNA repair protein RAD5 94.7 0.017 5.7E-07 59.2 3.7 40 124-163 174-222 (400)
279 2eyu_A Twitching motility prot 94.7 0.017 5.8E-07 55.6 3.4 30 125-154 22-51 (261)
280 1z6g_A Guanylate kinase; struc 94.6 0.017 5.9E-07 53.8 3.3 27 126-152 21-47 (218)
281 3a00_A Guanylate kinase, GMP k 94.6 0.017 5.9E-07 52.2 3.2 25 129-153 2-26 (186)
282 3eph_A TRNA isopentenyltransfe 94.6 0.012 4.2E-07 60.0 2.3 30 129-158 3-32 (409)
283 1gtv_A TMK, thymidylate kinase 94.6 0.01 3.5E-07 54.6 1.6 27 131-157 3-29 (214)
284 2v9p_A Replication protein E1; 94.6 0.017 5.8E-07 56.9 3.2 29 124-152 122-150 (305)
285 1ex7_A Guanylate kinase; subst 94.6 0.019 6.4E-07 52.3 3.3 28 129-156 2-29 (186)
286 1htw_A HI0065; nucleotide-bind 94.5 0.017 5.7E-07 51.2 2.8 27 126-152 31-57 (158)
287 2chg_A Replication factor C sm 94.4 0.019 6.4E-07 52.5 3.0 59 420-482 45-115 (226)
288 3ney_A 55 kDa erythrocyte memb 94.4 0.02 6.7E-07 52.7 3.1 26 128-153 19-44 (197)
289 3e1s_A Exodeoxyribonuclease V, 94.4 0.036 1.2E-06 59.6 5.5 54 95-164 187-243 (574)
290 2yhs_A FTSY, cell division pro 94.4 0.02 6.7E-07 60.1 3.3 26 128-153 293-318 (503)
291 4eaq_A DTMP kinase, thymidylat 94.3 0.019 6.4E-07 54.1 2.8 25 130-154 28-52 (229)
292 1a7j_A Phosphoribulokinase; tr 94.3 0.02 6.9E-07 56.0 3.1 36 130-165 7-45 (290)
293 4gp7_A Metallophosphoesterase; 94.3 0.012 4.1E-07 52.6 1.2 23 127-149 8-30 (171)
294 1znw_A Guanylate kinase, GMP k 94.3 0.021 7.2E-07 52.6 2.9 28 126-153 18-45 (207)
295 2axn_A 6-phosphofructo-2-kinas 94.2 0.019 6.6E-07 61.0 2.9 37 129-165 36-75 (520)
296 1m8p_A Sulfate adenylyltransfe 94.2 0.022 7.7E-07 61.1 3.5 36 130-165 398-437 (573)
297 1g8p_A Magnesium-chelatase 38 94.2 0.041 1.4E-06 54.7 5.0 21 417-437 48-70 (350)
298 1njg_A DNA polymerase III subu 94.1 0.014 4.9E-07 54.0 1.5 63 419-481 51-138 (250)
299 1ojl_A Transcriptional regulat 94.1 0.012 4.3E-07 57.9 1.0 63 416-482 27-109 (304)
300 2ewv_A Twitching motility prot 94.0 0.022 7.5E-07 57.8 2.6 37 118-154 126-162 (372)
301 1p9r_A General secretion pathw 93.9 0.057 1.9E-06 55.6 5.6 50 90-154 143-193 (418)
302 3ec2_A DNA replication protein 93.9 0.021 7E-07 51.2 2.0 61 419-481 44-112 (180)
303 3jvv_A Twitching mobility prot 93.8 0.024 8.2E-07 57.2 2.6 26 130-155 125-150 (356)
304 1odf_A YGR205W, hypothetical 3 93.8 0.019 6.4E-07 56.2 1.7 26 129-154 32-57 (290)
305 1fnn_A CDC6P, cell division co 93.8 0.14 4.8E-06 51.3 8.3 63 419-481 50-137 (389)
306 3dm5_A SRP54, signal recogniti 93.8 0.057 2E-06 55.9 5.3 38 128-165 100-140 (443)
307 3lnc_A Guanylate kinase, GMP k 93.7 0.019 6.7E-07 53.7 1.5 28 126-153 25-53 (231)
308 1bif_A 6-phosphofructo-2-kinas 93.7 0.027 9.2E-07 59.0 2.7 34 128-161 39-72 (469)
309 2px0_A Flagellar biosynthesis 93.6 0.081 2.8E-06 51.8 6.0 59 101-162 80-143 (296)
310 2orw_A Thymidine kinase; TMTK, 93.6 0.042 1.5E-06 49.8 3.6 30 130-159 5-37 (184)
311 2i3b_A HCR-ntpase, human cance 93.6 0.033 1.1E-06 50.8 2.9 24 130-153 3-26 (189)
312 1zu4_A FTSY; GTPase, signal re 93.6 0.037 1.3E-06 54.9 3.4 28 126-153 103-130 (320)
313 3bos_A Putative DNA replicatio 93.5 0.044 1.5E-06 50.9 3.7 54 420-483 59-118 (242)
314 1c9k_A COBU, adenosylcobinamid 93.5 0.03 1E-06 50.6 2.4 32 131-163 2-33 (180)
315 3bh0_A DNAB-like replicative h 93.5 0.039 1.3E-06 54.5 3.3 39 124-162 64-105 (315)
316 2bjv_A PSP operon transcriptio 93.4 0.064 2.2E-06 51.2 4.8 22 416-437 31-54 (265)
317 3cr8_A Sulfate adenylyltranfer 93.4 0.029 1E-06 59.9 2.5 37 128-164 369-409 (552)
318 2gk6_A Regulator of nonsense t 93.4 0.056 1.9E-06 58.7 4.8 41 130-170 197-241 (624)
319 4a1f_A DNAB helicase, replicat 93.4 0.11 3.6E-06 52.0 6.4 39 124-162 42-83 (338)
320 3kta_A Chromosome segregation 93.4 0.04 1.4E-06 49.3 3.0 30 124-153 21-51 (182)
321 3kl4_A SRP54, signal recogniti 93.3 0.05 1.7E-06 56.2 3.9 37 128-164 97-136 (433)
322 3vkg_A Dynein heavy chain, cyt 93.2 0.04 1.4E-06 69.5 3.5 38 128-165 604-641 (3245)
323 3e70_C DPA, signal recognition 93.1 0.078 2.7E-06 52.7 5.0 26 128-153 129-154 (328)
324 1g8f_A Sulfate adenylyltransfe 93.1 0.042 1.5E-06 58.0 3.1 25 130-154 397-421 (511)
325 2r6a_A DNAB helicase, replicat 93.1 0.066 2.3E-06 55.7 4.5 39 124-162 199-241 (454)
326 1s96_A Guanylate kinase, GMP k 92.9 0.048 1.6E-06 51.0 2.9 26 128-153 16-41 (219)
327 2fz4_A DNA repair protein RAD2 92.8 0.13 4.6E-06 48.3 5.9 34 130-163 110-143 (237)
328 1rj9_A FTSY, signal recognitio 92.8 0.053 1.8E-06 53.4 3.1 25 129-153 103-127 (304)
329 2q6t_A DNAB replication FORK h 92.7 0.075 2.6E-06 55.2 4.3 39 124-162 196-238 (444)
330 2b8t_A Thymidine kinase; deoxy 92.7 0.075 2.6E-06 49.8 3.9 30 131-160 15-47 (223)
331 1sq5_A Pantothenate kinase; P- 92.7 0.041 1.4E-06 54.2 2.2 23 131-153 83-105 (308)
332 4edh_A DTMP kinase, thymidylat 92.6 0.057 1.9E-06 50.2 2.9 24 131-154 9-32 (213)
333 1p5z_B DCK, deoxycytidine kina 92.6 0.021 7.4E-07 54.7 0.0 26 128-153 24-49 (263)
334 3aez_A Pantothenate kinase; tr 92.5 0.055 1.9E-06 53.4 2.8 24 131-154 93-116 (312)
335 2r8r_A Sensor protein; KDPD, P 92.5 0.062 2.1E-06 50.4 2.9 34 130-163 8-44 (228)
336 2wjy_A Regulator of nonsense t 92.4 0.088 3E-06 58.8 4.6 41 130-170 373-417 (800)
337 1z6t_A APAF-1, apoptotic prote 92.4 0.12 4E-06 55.5 5.5 48 93-151 123-170 (591)
338 2cbz_A Multidrug resistance-as 92.4 0.045 1.5E-06 51.8 2.0 29 125-153 28-56 (237)
339 2ocp_A DGK, deoxyguanosine kin 92.4 0.051 1.8E-06 51.2 2.3 25 129-153 3-27 (241)
340 3fvq_A Fe(3+) IONS import ATP- 92.4 0.049 1.7E-06 54.8 2.3 44 120-163 20-67 (359)
341 3tqc_A Pantothenate kinase; bi 92.4 0.061 2.1E-06 53.3 2.9 23 131-153 95-117 (321)
342 2j37_W Signal recognition part 92.4 0.1 3.5E-06 54.9 4.8 37 127-163 100-139 (504)
343 2kjq_A DNAA-related protein; s 92.4 0.064 2.2E-06 46.8 2.7 49 419-482 42-96 (149)
344 2v3c_C SRP54, signal recogniti 92.4 0.081 2.8E-06 54.7 4.0 37 127-163 98-137 (432)
345 3v9p_A DTMP kinase, thymidylat 92.4 0.057 1.9E-06 50.8 2.5 25 131-155 28-52 (227)
346 2ged_A SR-beta, signal recogni 92.3 0.11 3.9E-06 46.4 4.5 26 127-152 47-72 (193)
347 1a5t_A Delta prime, HOLB; zinc 92.3 0.17 5.7E-06 50.3 6.1 79 419-511 30-136 (334)
348 1w36_D RECD, exodeoxyribonucle 92.2 0.087 3E-06 57.0 4.2 25 129-153 165-189 (608)
349 3tif_A Uncharacterized ABC tra 92.2 0.049 1.7E-06 51.4 2.0 34 120-153 21-56 (235)
350 2pcj_A ABC transporter, lipopr 92.2 0.043 1.5E-06 51.5 1.5 28 126-153 28-55 (224)
351 1np6_A Molybdopterin-guanine d 92.1 0.077 2.6E-06 47.6 3.1 26 128-153 6-31 (174)
352 3tmk_A Thymidylate kinase; pho 92.1 0.089 3.1E-06 49.0 3.6 27 129-155 6-32 (216)
353 1q57_A DNA primase/helicase; d 92.1 0.08 2.7E-06 55.8 3.6 40 124-163 238-281 (503)
354 2r2a_A Uncharacterized protein 92.1 0.054 1.8E-06 49.8 2.0 66 420-485 12-103 (199)
355 2onk_A Molybdate/tungstate ABC 92.0 0.059 2E-06 51.1 2.2 28 125-153 22-49 (240)
356 2gxq_A Heat resistant RNA depe 92.0 0.13 4.6E-06 46.6 4.6 52 92-146 2-56 (207)
357 2yyz_A Sugar ABC transporter, 92.0 0.063 2.1E-06 54.1 2.5 25 129-153 30-54 (359)
358 1xjc_A MOBB protein homolog; s 92.0 0.081 2.8E-06 47.3 2.9 27 129-155 5-31 (169)
359 3f9v_A Minichromosome maintena 91.9 0.0086 3E-07 64.7 -4.2 23 416-438 329-353 (595)
360 3rlf_A Maltose/maltodextrin im 91.9 0.063 2.1E-06 54.5 2.5 33 121-153 20-54 (381)
361 2it1_A 362AA long hypothetical 91.9 0.063 2.2E-06 54.1 2.5 25 129-153 30-54 (362)
362 1sgw_A Putative ABC transporte 91.9 0.058 2E-06 50.2 2.0 29 125-153 32-60 (214)
363 2gks_A Bifunctional SAT/APS ki 91.9 0.075 2.5E-06 56.7 3.1 36 129-164 373-411 (546)
364 1j8m_F SRP54, signal recogniti 91.9 0.16 5.4E-06 49.8 5.2 34 128-161 98-134 (297)
365 3bgw_A DNAB-like replicative h 91.9 0.094 3.2E-06 54.5 3.7 39 124-162 193-234 (444)
366 1b0u_A Histidine permease; ABC 91.9 0.057 1.9E-06 51.9 1.9 34 120-153 22-57 (262)
367 1z47_A CYSA, putative ABC-tran 91.9 0.06 2.1E-06 54.1 2.2 28 126-153 39-66 (355)
368 3d31_A Sulfate/molybdate ABC t 91.8 0.056 1.9E-06 54.2 1.9 25 129-153 27-51 (348)
369 2r44_A Uncharacterized protein 91.8 0.13 4.6E-06 50.7 4.7 20 420-439 53-73 (331)
370 1v43_A Sugar-binding transport 91.8 0.067 2.3E-06 54.1 2.5 25 129-153 38-62 (372)
371 3vkg_A Dynein heavy chain, cyt 91.7 0.051 1.8E-06 68.5 1.8 57 419-479 1652-1714(3245)
372 1tf7_A KAIC; homohexamer, hexa 91.7 0.096 3.3E-06 55.6 3.8 41 124-164 35-79 (525)
373 1qde_A EIF4A, translation init 91.7 0.18 6E-06 46.5 5.2 55 88-145 11-68 (224)
374 3tqf_A HPR(Ser) kinase; transf 91.7 0.062 2.1E-06 48.2 1.9 24 128-151 16-39 (181)
375 2zu0_C Probable ATP-dependent 91.6 0.073 2.5E-06 51.3 2.5 27 125-151 43-69 (267)
376 2w58_A DNAI, primosome compone 91.6 0.029 1E-06 51.1 -0.4 61 420-482 61-128 (202)
377 3b85_A Phosphate starvation-in 91.6 0.054 1.8E-06 50.2 1.5 23 129-151 23-45 (208)
378 2olj_A Amino acid ABC transpor 91.6 0.064 2.2E-06 51.6 1.9 28 126-153 48-75 (263)
379 3bor_A Human initiation factor 91.5 0.34 1.2E-05 45.2 7.0 56 89-147 28-86 (237)
380 4i1u_A Dephospho-COA kinase; s 91.5 0.097 3.3E-06 48.5 3.1 28 130-158 11-38 (210)
381 1g6h_A High-affinity branched- 91.5 0.061 2.1E-06 51.5 1.8 27 127-153 32-58 (257)
382 3f8t_A Predicted ATPase involv 91.5 0.11 3.7E-06 54.1 3.6 23 130-153 241-264 (506)
383 3lv8_A DTMP kinase, thymidylat 91.5 0.093 3.2E-06 49.6 2.9 27 129-155 28-54 (236)
384 3ld9_A DTMP kinase, thymidylat 91.5 0.14 4.8E-06 47.9 4.1 24 131-154 24-47 (223)
385 2ghi_A Transport protein; mult 91.4 0.067 2.3E-06 51.3 2.0 29 125-153 43-71 (260)
386 2d2e_A SUFC protein; ABC-ATPas 91.4 0.073 2.5E-06 50.7 2.2 27 125-151 26-52 (250)
387 2ff7_A Alpha-hemolysin translo 91.4 0.062 2.1E-06 51.2 1.7 29 125-153 32-60 (247)
388 2ixe_A Antigen peptide transpo 91.4 0.067 2.3E-06 51.7 2.0 40 125-164 42-83 (271)
389 1g29_1 MALK, maltose transport 91.4 0.071 2.4E-06 54.0 2.2 27 127-153 28-54 (372)
390 2ffh_A Protein (FFH); SRP54, s 91.3 0.15 5.1E-06 52.5 4.5 36 127-162 97-135 (425)
391 2xzl_A ATP-dependent helicase 91.3 0.14 4.8E-06 57.2 4.6 42 130-171 377-422 (802)
392 2pze_A Cystic fibrosis transme 91.3 0.065 2.2E-06 50.4 1.6 29 125-153 31-59 (229)
393 1mv5_A LMRA, multidrug resista 91.3 0.061 2.1E-06 51.0 1.4 28 126-153 26-53 (243)
394 1ji0_A ABC transporter; ATP bi 91.2 0.066 2.3E-06 50.7 1.7 28 126-153 30-57 (240)
395 1lw7_A Transcriptional regulat 91.2 0.081 2.8E-06 53.3 2.4 28 128-155 170-197 (365)
396 1in4_A RUVB, holliday junction 91.2 0.17 5.9E-06 50.2 4.8 58 419-482 57-115 (334)
397 1sxj_D Activator 1 41 kDa subu 91.2 0.12 4E-06 51.2 3.6 19 419-437 64-83 (353)
398 1tf7_A KAIC; homohexamer, hexa 91.2 0.085 2.9E-06 56.0 2.6 39 124-162 277-318 (525)
399 3ice_A Transcription terminati 91.1 0.11 3.7E-06 52.7 3.2 28 127-154 173-200 (422)
400 3gfo_A Cobalt import ATP-bindi 91.1 0.067 2.3E-06 51.8 1.6 45 120-164 24-72 (275)
401 1oxx_K GLCV, glucose, ABC tran 91.1 0.06 2E-06 54.2 1.3 25 129-153 32-56 (353)
402 2xxa_A Signal recognition part 91.1 0.13 4.4E-06 53.2 3.8 39 127-165 99-141 (433)
403 1jr3_A DNA polymerase III subu 91.0 0.13 4.4E-06 51.4 3.7 63 419-481 44-131 (373)
404 2qi9_C Vitamin B12 import ATP- 91.0 0.072 2.5E-06 50.8 1.6 29 125-153 23-51 (249)
405 1vpl_A ABC transporter, ATP-bi 91.0 0.08 2.7E-06 50.7 1.9 28 126-153 39-66 (256)
406 2ihy_A ABC transporter, ATP-bi 90.9 0.073 2.5E-06 51.7 1.6 28 126-153 45-72 (279)
407 2yz2_A Putative ABC transporte 90.9 0.081 2.8E-06 50.9 2.0 29 125-153 30-58 (266)
408 1t6n_A Probable ATP-dependent 90.8 0.42 1.5E-05 43.8 6.8 70 90-162 13-91 (220)
409 3gd7_A Fusion complex of cysti 90.8 0.091 3.1E-06 53.5 2.3 28 126-153 45-72 (390)
410 2pl3_A Probable ATP-dependent 90.8 0.42 1.4E-05 44.4 6.8 54 90-146 24-80 (236)
411 2dpy_A FLII, flagellum-specifi 90.7 0.14 4.7E-06 53.1 3.6 29 129-157 158-186 (438)
412 4g1u_C Hemin import ATP-bindin 90.7 0.078 2.7E-06 51.1 1.6 39 126-164 35-75 (266)
413 2oap_1 GSPE-2, type II secreti 90.7 0.074 2.5E-06 56.3 1.6 28 126-153 258-285 (511)
414 4tmk_A Protein (thymidylate ki 90.7 0.11 3.9E-06 48.1 2.7 25 130-154 5-29 (213)
415 2gza_A Type IV secretion syste 90.7 0.071 2.4E-06 53.8 1.4 31 124-154 171-201 (361)
416 2nq2_C Hypothetical ABC transp 90.6 0.079 2.7E-06 50.6 1.6 29 125-153 28-56 (253)
417 3sfz_A APAF-1, apoptotic pepti 90.5 0.21 7.1E-06 58.1 5.4 50 92-152 122-171 (1249)
418 1sxj_B Activator 1 37 kDa subu 90.5 0.18 6E-06 49.1 4.1 60 419-482 48-120 (323)
419 2a5y_B CED-4; apoptosis; HET: 90.5 0.17 5.8E-06 53.9 4.3 44 97-150 131-174 (549)
420 2f9l_A RAB11B, member RAS onco 90.5 0.12 4.2E-06 46.7 2.7 22 130-151 7-28 (199)
421 2obl_A ESCN; ATPase, hydrolase 90.5 0.13 4.6E-06 51.4 3.2 31 126-156 69-99 (347)
422 1oix_A RAS-related protein RAB 90.4 0.12 4E-06 46.6 2.5 23 130-152 31-53 (191)
423 1nrj_B SR-beta, signal recogni 90.4 0.14 4.7E-06 46.9 3.0 25 128-152 12-36 (218)
424 1ls1_A Signal recognition part 90.3 0.22 7.7E-06 48.6 4.6 26 128-153 98-123 (295)
425 1hv8_A Putative ATP-dependent 90.2 0.46 1.6E-05 46.8 6.9 73 90-165 5-86 (367)
426 1q0u_A Bstdead; DEAD protein, 90.2 0.34 1.1E-05 44.5 5.5 71 91-164 4-83 (219)
427 2qm8_A GTPase/ATPase; G protei 90.2 0.18 6.2E-06 50.2 3.9 23 131-153 58-80 (337)
428 2f1r_A Molybdopterin-guanine d 90.2 0.093 3.2E-06 47.0 1.5 27 129-155 3-29 (171)
429 2gno_A DNA polymerase III, gam 90.1 0.41 1.4E-05 46.9 6.3 77 418-512 23-111 (305)
430 2zr9_A Protein RECA, recombina 90.1 0.31 1.1E-05 48.8 5.5 64 420-483 68-153 (349)
431 2npi_A Protein CLP1; CLP1-PCF1 89.9 0.14 4.9E-06 53.3 2.9 38 124-161 134-175 (460)
432 2p5s_A RAS and EF-hand domain 89.8 0.13 4.4E-06 46.5 2.2 25 127-151 27-51 (199)
433 3ber_A Probable ATP-dependent 89.7 0.32 1.1E-05 46.0 5.0 55 89-146 41-98 (249)
434 2bbs_A Cystic fibrosis transme 89.7 0.11 3.8E-06 50.7 1.8 35 119-153 53-89 (290)
435 2dyk_A GTP-binding protein; GT 89.7 0.16 5.5E-06 43.6 2.7 22 130-151 3-24 (161)
436 2pt7_A CAG-ALFA; ATPase, prote 89.5 0.075 2.6E-06 52.9 0.4 29 125-153 168-196 (330)
437 1vec_A ATP-dependent RNA helic 89.4 0.23 7.8E-06 45.0 3.6 53 92-147 4-59 (206)
438 1z2a_A RAS-related protein RAB 89.3 0.18 6.1E-06 43.6 2.7 22 130-151 7-28 (168)
439 2pjz_A Hypothetical protein ST 89.3 0.12 4.2E-06 49.6 1.7 33 120-152 21-54 (263)
440 3p32_A Probable GTPase RV1496/ 89.3 0.23 8E-06 49.7 3.9 33 129-161 80-115 (355)
441 1dek_A Deoxynucleoside monopho 89.3 0.16 5.4E-06 48.2 2.4 33 131-165 4-36 (241)
442 2hf9_A Probable hydrogenase ni 89.2 0.32 1.1E-05 44.7 4.5 26 128-153 38-63 (226)
443 1qhl_A Protein (cell division 89.1 0.1 3.4E-06 49.1 0.9 23 131-153 30-52 (227)
444 2ce2_X GTPase HRAS; signaling 89.1 0.18 6E-06 43.3 2.5 22 130-151 5-26 (166)
445 3m9b_A Proteasome-associated A 89.1 0.35 1.2E-05 45.3 4.6 44 34-78 116-159 (251)
446 3sop_A Neuronal-specific septi 89.0 0.18 6.1E-06 48.6 2.7 23 131-153 5-27 (270)
447 2zej_A Dardarin, leucine-rich 89.0 0.15 5.1E-06 45.5 2.0 22 130-151 4-25 (184)
448 3nh6_A ATP-binding cassette SU 89.0 0.12 4.1E-06 50.8 1.4 40 125-164 77-118 (306)
449 2wji_A Ferrous iron transport 88.9 0.19 6.3E-06 43.9 2.5 21 130-150 5-25 (165)
450 1kao_A RAP2A; GTP-binding prot 88.9 0.2 6.7E-06 43.1 2.7 21 130-150 5-25 (167)
451 3b6e_A Interferon-induced heli 88.8 0.4 1.4E-05 43.5 4.8 35 129-163 49-92 (216)
452 2chq_A Replication factor C sm 88.8 0.14 4.7E-06 49.8 1.7 62 419-482 44-115 (319)
453 2wsm_A Hydrogenase expression/ 88.7 0.22 7.5E-06 45.7 3.0 26 128-153 30-55 (221)
454 3tui_C Methionine import ATP-b 88.7 0.18 6E-06 50.8 2.5 45 120-164 44-92 (366)
455 1u8z_A RAS-related protein RAL 88.7 0.21 7.2E-06 43.0 2.7 22 129-150 5-26 (168)
456 1ek0_A Protein (GTP-binding pr 88.6 0.21 7.2E-06 43.1 2.7 22 130-151 5-26 (170)
457 1wms_A RAB-9, RAB9, RAS-relate 88.5 0.22 7.4E-06 43.6 2.7 22 130-151 9-30 (177)
458 2nzj_A GTP-binding protein REM 88.4 0.21 7.1E-06 43.5 2.5 21 130-150 6-26 (175)
459 1z0j_A RAB-22, RAS-related pro 88.4 0.22 7.7E-06 43.0 2.7 22 130-151 8-29 (170)
460 1z08_A RAS-related protein RAB 88.3 0.23 7.7E-06 43.1 2.6 22 130-151 8-29 (170)
461 4hlc_A DTMP kinase, thymidylat 88.2 0.36 1.2E-05 44.4 4.1 29 131-159 5-35 (205)
462 1ky3_A GTP-binding protein YPT 88.1 0.23 8E-06 43.5 2.7 23 129-151 9-31 (182)
463 1g16_A RAS-related protein SEC 88.1 0.23 7.8E-06 43.0 2.5 22 130-151 5-26 (170)
464 1yrb_A ATP(GTP)binding protein 88.0 0.36 1.2E-05 45.6 4.0 31 130-160 16-48 (262)
465 3pey_A ATP-dependent RNA helic 88.0 0.8 2.7E-05 45.6 6.8 80 91-170 5-92 (395)
466 2xau_A PRE-mRNA-splicing facto 87.9 0.82 2.8E-05 50.8 7.4 81 88-170 69-157 (773)
467 2lkc_A Translation initiation 87.9 0.26 9.1E-06 43.1 2.9 23 128-150 8-30 (178)
468 1f2t_A RAD50 ABC-ATPase; DNA d 87.9 0.27 9.3E-06 42.7 2.9 22 131-152 26-47 (149)
469 1r8s_A ADP-ribosylation factor 87.9 0.27 9.1E-06 42.4 2.8 20 131-150 3-22 (164)
470 1r2q_A RAS-related protein RAB 87.9 0.25 8.7E-06 42.6 2.7 21 130-150 8-28 (170)
471 1sky_E F1-ATPase, F1-ATP synth 87.9 0.19 6.4E-06 52.3 2.1 27 128-154 151-177 (473)
472 1pui_A ENGB, probable GTP-bind 87.7 0.14 4.8E-06 46.5 0.9 29 123-151 21-49 (210)
473 3q85_A GTP-binding protein REM 87.7 0.25 8.4E-06 42.8 2.5 21 130-150 4-24 (169)
474 1upt_A ARL1, ADP-ribosylation 87.7 0.25 8.6E-06 42.8 2.5 22 129-150 8-29 (171)
475 1xp8_A RECA protein, recombina 87.7 0.79 2.7E-05 46.1 6.5 65 420-484 81-167 (366)
476 3bc1_A RAS-related protein RAB 87.6 0.27 9.1E-06 43.6 2.7 21 130-150 13-33 (195)
477 1c1y_A RAS-related protein RAP 87.6 0.27 9.3E-06 42.3 2.7 21 130-150 5-25 (167)
478 2wjg_A FEOB, ferrous iron tran 87.5 0.25 8.7E-06 43.7 2.5 22 130-151 9-30 (188)
479 2hxs_A RAB-26, RAS-related pro 87.5 0.24 8.2E-06 43.3 2.3 22 130-151 8-29 (178)
480 2erx_A GTP-binding protein DI- 87.5 0.26 8.8E-06 42.6 2.5 21 130-150 5-25 (172)
481 3q72_A GTP-binding protein RAD 87.5 0.23 7.9E-06 42.9 2.2 21 130-150 4-24 (166)
482 2y8e_A RAB-protein 6, GH09086P 87.4 0.26 9E-06 43.0 2.5 21 130-150 16-36 (179)
483 3iuy_A Probable ATP-dependent 87.3 0.91 3.1E-05 41.8 6.3 58 87-147 15-76 (228)
484 1m7b_A RND3/RHOE small GTP-bin 87.2 0.27 9.2E-06 43.6 2.5 22 130-151 9-30 (184)
485 3ch4_B Pmkase, phosphomevalona 87.2 0.36 1.2E-05 44.3 3.3 40 127-166 10-50 (202)
486 1xti_A Probable ATP-dependent 87.2 1.1 3.9E-05 44.5 7.5 70 91-163 8-86 (391)
487 3con_A GTPase NRAS; structural 87.1 0.29 1E-05 43.5 2.7 22 130-151 23-44 (190)
488 2b6h_A ADP-ribosylation factor 87.1 0.29 9.8E-06 44.0 2.6 23 128-150 29-51 (192)
489 2a9k_A RAS-related protein RAL 87.0 0.3 1E-05 43.0 2.7 22 129-150 19-40 (187)
490 2oil_A CATX-8, RAS-related pro 87.0 0.3 1E-05 43.6 2.7 22 130-151 27-48 (193)
491 1svi_A GTP-binding protein YSX 87.0 0.35 1.2E-05 43.1 3.2 24 128-151 23-46 (195)
492 4dsu_A GTPase KRAS, isoform 2B 87.0 0.3 1E-05 43.1 2.7 22 130-151 6-27 (189)
493 2qgz_A Helicase loader, putati 87.0 0.079 2.7E-06 52.2 -1.4 61 420-482 159-227 (308)
494 1z0f_A RAB14, member RAS oncog 86.9 0.31 1.1E-05 42.5 2.7 23 129-151 16-38 (179)
495 2atv_A RERG, RAS-like estrogen 86.9 0.27 9.2E-06 44.1 2.3 23 129-151 29-51 (196)
496 2oxc_A Probable ATP-dependent 86.9 0.48 1.6E-05 43.9 4.2 55 88-145 21-78 (230)
497 3tw8_B RAS-related protein RAB 86.8 0.27 9.4E-06 42.9 2.3 21 130-150 11-31 (181)
498 2efe_B Small GTP-binding prote 86.8 0.31 1.1E-05 42.7 2.6 21 130-150 14-34 (181)
499 2bme_A RAB4A, RAS-related prot 86.7 0.3 1E-05 43.1 2.5 23 129-151 11-33 (186)
500 2va8_A SSO2462, SKI2-type heli 86.7 0.47 1.6E-05 52.1 4.6 81 89-170 6-92 (715)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.9e-45 Score=402.12 Aligned_cols=379 Identities=26% Similarity=0.383 Sum_probs=228.5
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
....|+++|+||||+++++++|++.+++|+++|++|.++|+.+|+|||||||||||||++||++|++++.+|+.|+++++
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCCccC---------CCCCccccccccCCCCccC
Q psy11253 165 AI----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHSHDH---------GKLPSFKYSKQANEPYHQD 216 (515)
Q Consensus 165 ~~----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~ 216 (515)
.+ +.+| ||+|+| +|+|+.+|+......+..-.. .+...+.....++.+...|
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 76 5566 477777 999999997543221100000 0000011111222221111
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCC
Q psy11253 217 VKHPITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHG 296 (515)
Q Consensus 217 ~~~~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~ 296 (515)
. ... ....+-..+.+|++....+..+++.++ -+. |..
T Consensus 355 ~---ALr-------------R~GRFd~~I~i~~Pd~~~R~~IL~~~l---~~~----------~~~-------------- 391 (806)
T 3cf2_A 355 P---ALR-------------RFGRFDREVDIGIPDATGRLEILQIHT---KNM----------KLA-------------- 391 (806)
T ss_dssp T---TTT-------------STTSSCEEEECCCCCHHHHHHHHHHTC---SSS----------EEC--------------
T ss_pred H---HHh-------------CCcccceEEecCCCCHHHHHHHHHHHh---cCC----------CCC--------------
Confidence 0 000 000111234455555444555554332 111 000
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCCCCccc-ccCCCCCCCCCCCCCCCCCCccchhh
Q psy11253 297 GSHEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGH----GHSHGKPIEK-KKHTSSGEDSDLSDDEDDSDDVDYKK 371 (515)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~----~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (515)
.......++..+.| +..+.+..+|-+..+..+++.. .+........ ..... +.++............
T Consensus 392 -~dvdl~~lA~~T~G--fsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v-----~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 392 -DDVDLEQVANETHG--HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAV-----TMDDFRWALSQSNPSA 463 (806)
T ss_dssp -TTCCHHHHHHHCCS--CCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEE-----CTTHHHHHHSSSSCCC
T ss_pred -cccCHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhccccccccccccchhhhcccee-----eHHHHHHHHHhCCCcc
Confidence 00001111111111 1233444445554443332200 0000000000 00000 0000000000000000
Q ss_pred hhhhcccCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee-
Q psy11253 372 TKRVKAKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI- 443 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~- 443 (515)
.+....+.+...|++++ .+..+.....++...++-+. .|..++.+.++ | ||||||.+|++++.+++...+.+
T Consensus 464 ~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 464 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred cccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 11122345677898885 44555666667777777764 78888999887 8 99999999999999999755555
Q ss_pred -eceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 444 -HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 444 -~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
++++++|+|++|++|+.+|+.||+.+||||||||||+++++|+....+.+...++++|+||++|||+.+..
T Consensus 544 ~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred cchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999999999999965544445566799999999999998753
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=323.13 Aligned_cols=129 Identities=45% Similarity=0.781 Sum_probs=123.3
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.+++++|++.+.+.++.+.++||++|.++..+..+++.+|...||.+..+...+.|+++|+||||++++|++|+++|++|
T Consensus 88 ~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~P 167 (405)
T 4b4t_J 88 VQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELP 167 (405)
T ss_dssp ESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHH
T ss_pred eCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+++|++|+++|+.+|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 168 l~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 168 VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp HHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred HhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 9999999999999999999999999999999999999988877766543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=319.74 Aligned_cols=128 Identities=46% Similarity=0.783 Sum_probs=123.1
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
+++|++|++.+.+.++++.++||++|.+++.+..+++.+|.+.|+.+..+.+++.|+++|+||||++++|++|++.|++|
T Consensus 122 ~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~P 201 (437)
T 4b4t_I 122 SPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELP 201 (437)
T ss_dssp CSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+++|++|+++|+.+|+|||||||||||||++|+|+|++++++|+.+++
T Consensus 202 l~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 202 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp HHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred HhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 999999999999999999999999999999999999988877766543
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=322.52 Aligned_cols=128 Identities=69% Similarity=1.147 Sum_probs=122.3
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
+++|++|++.+.+.++.++++||++|.++..+..+++.+|++.||.+..+.+.+.|+++|+||||++++|++|++.|++|
T Consensus 121 ~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~p 200 (437)
T 4b4t_L 121 ASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELP 200 (437)
T ss_dssp ETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+++|++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 201 l~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp HHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 999999999999999999999999999999999999988877766543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-37 Score=318.04 Aligned_cols=128 Identities=48% Similarity=0.829 Sum_probs=122.2
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.+++++|+|.|.+.+++++|+||++|.+++.++.++..+|.+.||.+..|.+++.|+++|+||||++++|++|++.|++|
T Consensus 149 ~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~p 228 (467)
T 4b4t_H 149 LKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELP 228 (467)
T ss_dssp ETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHH
T ss_pred ecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+.+|++|.++|+.+|+|||||||||||||++|+|+|++++++|+.+++
T Consensus 229 l~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 229 LLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp HHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 999999999999999999999999999999999999988877766543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=313.54 Aligned_cols=128 Identities=42% Similarity=0.657 Sum_probs=122.5
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
++++++|++.+.+.++++.++||++|.++..+..+++.||.+.||.+..+..++.|+++|+||||++++|++|++.|++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~p 200 (434)
T 4b4t_M 121 TSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLP 200 (434)
T ss_dssp ETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHH
T ss_pred cCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+++|++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 201 l~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp HHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 999999999999999999999999999999999999988877776543
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=308.49 Aligned_cols=128 Identities=42% Similarity=0.763 Sum_probs=122.2
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 113 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~ 113 (515)
.+++++|++.+.+.++++.++||++|.++..+..++..+|.+.|+.+..+.+++.|+++|+||||++++|++|++.+.+|
T Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~p 191 (428)
T 4b4t_K 112 STTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELP 191 (428)
T ss_dssp ETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 114 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 114 ~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+++|++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 192 l~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp HHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred HhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 999999999999999999999999999999999999988877766543
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=4.9e-29 Score=280.39 Aligned_cols=381 Identities=25% Similarity=0.375 Sum_probs=205.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..++++|+||+|++.+++.+++.+.+|+.++++|..+++.+++++|||||||||||++|+++|++++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCCCCCCCCCCc--------cC-CCCCccccccccCCCCccCCC
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGHSHHSHEHSH--------DH-GKLPSFKYSKQANEPYHQDVK 218 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~~~~~~e~~~--------~~-~~~~~~~~~~~~~~~~~~~~~ 218 (515)
+.+| +++|+| +|.++..|+......+..- +. .....+.....++.+...+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld-- 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID-- 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC--
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC--
Confidence 3444 356666 9999988764321100000 00 0000011111111111110
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhheeeeccCCCCCChhHHHHHHHhhccccccchhhhcccccccCCCCCCCCCCCCCC
Q psy11253 219 HPITLQVWGEALLSTILISLAPFLILFVVPLDTATGNENFLKVLLSFGSGGLLGDAFLHLIPHAIGASKEHSHSHSHGGS 298 (515)
Q Consensus 219 ~~~~~~~w~~~~l~~~ii~~~~~l~~~~vp~~~~~~~~~~l~~l~~fa~G~Ll~~a~~~LLPea~~~~~~~~~~~~~~~~ 298 (515)
|... ....+-..+.++.+. .+..+..+..+.-...+ . .
T Consensus 355 -~al~-------------r~gRf~~~i~i~~p~---~~~r~~il~~~~~~~~l--------------~-----------~ 392 (806)
T 1ypw_A 355 -PALR-------------RFGRFDREVDIGIPD---ATGRLEILQIHTKNMKL--------------A-----------D 392 (806)
T ss_dssp -TTTT-------------STTSSCEEECCCCCC---HHHHHHHHHHTTTTSCC--------------C-----------T
T ss_pred -HHHh-------------cccccccccccCCCC---HHHHHHHHHHHHhcCCC--------------c-----------c
Confidence 0000 000010111222221 11122222211111100 0 0
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccchhhhhhhccc
Q psy11253 299 HEHSHSIADLSVGLWVLFGILAFLCVEKFVRYVKGGHGHSHGKPIEKKKHTSSGEDSDLSDDEDDSDDVDYKKTKRVKAK 378 (515)
Q Consensus 299 ~~~~~~~~~~~~g~~~l~G~~~~~~le~~i~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (515)
..........+.+ +....+..++.+..+..++..........................+...................
T Consensus 393 ~~~l~~la~~t~g--~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~ 470 (806)
T 1ypw_A 393 DVDLEQVANETHG--HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470 (806)
T ss_dssp TCCTHHHHHSCSS--CCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCC
T ss_pred cchhHHHHHhhcC--cchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhccc
Confidence 0000000000000 01112223333444333322110000000000000000000000000000000000000011122
Q ss_pred CCCCCCccch----hhhhhhhhhhhhccccc-cccccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecc
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTD-GLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDK 449 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~d-g~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~ 449 (515)
.+...|+++. ++..+.....+....++ ...+|.....+.++ | ||||||.++++++..++. +.+....+.++
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 3445666653 22333322222222222 33456666666666 8 999999999999999884 55556688999
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|+|+++++++.+|+.|+...||||||||||+++..|............+++++||++||++...
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999996554455566789999999999988653
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=3.5e-20 Score=205.61 Aligned_cols=112 Identities=36% Similarity=0.722 Sum_probs=95.8
Q ss_pred cccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 76 VDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
..|...+....+.|+++|+||+|++++|++|++.+.+|+++++.|.++|+.+++|+|||||||||||++|+++|++++.+
T Consensus 459 ~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 459 SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 33444455566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecchhhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 156 FLKVVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 156 ~~~v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
|+.++++++.+ +.+| ||+|+| +|+++..|+..
T Consensus 539 f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~ 589 (806)
T 3cf2_A 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589 (806)
T ss_dssp EEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------
T ss_pred eEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCC
Confidence 99999999986 6667 577766 99999999754
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=165.55 Aligned_cols=102 Identities=34% Similarity=0.671 Sum_probs=89.0
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-hhcceEEecch
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSRT 163 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-~~~~~~v~~~~ 163 (515)
+.+.|+++|+||+|++++|+.|++.+.+|++++++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35678999999999999999999999999999999985 35778999999999999999999999999 89999999998
Q ss_pred hhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 164 IAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 164 ~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
+.+ +.+| +++|+| +|+++..|...
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~ 124 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 124 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc
Confidence 754 4455 356666 99999988654
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.66 E-value=3.4e-17 Score=163.78 Aligned_cols=104 Identities=38% Similarity=0.761 Sum_probs=92.4
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
...+.|+++|+||+|++.+++.+++.+.+|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 164 IAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 164 ~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
+.+ +.+| +++|+| +|+++..|+..
T Consensus 85 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 127 (301)
T 3cf0_A 85 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127 (301)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTT
T ss_pred HHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCC
Confidence 864 3344 356655 99999887643
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.65 E-value=4.5e-17 Score=160.65 Aligned_cols=100 Identities=38% Similarity=0.675 Sum_probs=78.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..|+++|+||||++++|++|++.+.+|+.+++.|+.+++.+++|++||||||||||++++++|.+++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred ----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 ----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 ----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| +++|.| +|.++..|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~ 121 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC
Confidence 3444 345555 9999877653
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.63 E-value=1.4e-16 Score=160.84 Aligned_cols=102 Identities=33% Similarity=0.660 Sum_probs=88.0
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
...+.|+++|+||+|++.+++.+++.+.+|+.+++++.. +..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 356789999999999999999999999999999999988 5577899999999999999999999999999999999998
Q ss_pred hhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 164 IAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 164 ~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+ +.+| +++|+| +|.++..|+.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~ 128 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 128 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC
Confidence 865 3444 355666 9999998854
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.61 E-value=2.5e-16 Score=161.08 Aligned_cols=104 Identities=33% Similarity=0.648 Sum_probs=83.1
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
.....+.|+++|+||+|++.+++.|++.+.+|+.++++|.. +..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 44456788999999999999999999999999999999987 56788999999999999999999999999999999999
Q ss_pred chhhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 162 RTIAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 162 ~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+++.+ +.+| +++|+| +|.++..|+.
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 161 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC
Confidence 98854 3444 356666 9999988864
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=4.6e-16 Score=153.76 Aligned_cols=106 Identities=48% Similarity=0.905 Sum_probs=93.0
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
.+.....|+++|+||+|++++++.+++.+..|+.+++.+..+|+.+++++|||||||||||++|+++|++++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 162 RTIAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 162 ~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
+++.+ +.+| +++|+| +|.++..|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 129 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc
Confidence 98854 3333 255555 99999887653
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.58 E-value=1.4e-15 Score=160.24 Aligned_cols=107 Identities=33% Similarity=0.634 Sum_probs=87.4
Q ss_pred cccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-hhcceE
Q psy11253 80 VYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLK 158 (515)
Q Consensus 80 ~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-~~~~~~ 158 (515)
+........|+++|+||+|++.+++.+++.+.+|+.++++|.. +..+++++|||||||||||++|+++|+++ +.+|+.
T Consensus 120 ~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 120 LQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp ----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred hhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 3445566789999999999999999999999999999999985 45678999999999999999999999999 899999
Q ss_pred EecchhhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 159 VVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 159 v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
++++++.+ +.+| +++|+| +|+++..|...
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~ 246 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 246 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc
Confidence 99998865 3444 356666 99999888654
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.53 E-value=5.7e-15 Score=155.73 Aligned_cols=98 Identities=40% Similarity=0.735 Sum_probs=85.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI- 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~- 166 (515)
.+.++|+||+|++.+++++++.+.. +.+++.|.++|...|+|+|||||||||||++|+++|++++.||+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 6789999999999999999999876 78899999999999999999999999999999999999999999999998753
Q ss_pred ---------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 ---------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 ---------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| |++|+| +|+++..|+.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 4445 366666 9999998864
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.52 E-value=5.4e-15 Score=143.95 Aligned_cols=97 Identities=32% Similarity=0.637 Sum_probs=71.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH--
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI-- 166 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~-- 166 (515)
|+++|+||+|++.+++.+++.+.. +.+++.|..+|+.+++++|||||||||||++|+++|++++.+++.++++++..
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 578999999999999999999877 88899999999999999999999999999999999999999999999988743
Q ss_pred --------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 --------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 --------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| +++|+| +|.++..|..
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~ 116 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST 116 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC---------
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccc
Confidence 3333 345555 9999988754
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.50 E-value=6.5e-15 Score=156.35 Aligned_cols=99 Identities=41% Similarity=0.805 Sum_probs=89.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI- 166 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~- 166 (515)
.++++|++|+|++.+++.+++.+..|+.++++|..+|..+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 ---------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 ---------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| +++|+| +|.++..|+.
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc
Confidence 3444 266666 9999988864
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.50 E-value=1.5e-14 Score=143.91 Aligned_cols=102 Identities=36% Similarity=0.678 Sum_probs=86.8
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
...+.|+++|+||+|.+.+++.+++.+..|..+++++..++ .+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 45567889999999999999999999999999999998776 56789999999999999999999999999999999988
Q ss_pred hhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 164 IAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 164 ~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+ +.+| +++|+| +|.++..|..
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 131 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc
Confidence 753 3344 355555 9999988754
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.49 E-value=1.3e-14 Score=141.29 Aligned_cols=101 Identities=35% Similarity=0.621 Sum_probs=82.1
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
.++.++.+|+||+|++.+++++++.+.+ +.+++.|.+++...++++|||||||||||++|+++|++++.|++.++++++
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 3466789999999999999999998876 888899999999999999999999999999999999999999999999887
Q ss_pred hH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 165 AI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 165 ~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
.. +.+| +++|+| +|.+...|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~ 122 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCST
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCC
Confidence 53 3344 255555 9999987754
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=149.48 Aligned_cols=114 Identities=31% Similarity=0.617 Sum_probs=89.7
Q ss_pred cCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 72 LPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
+.......+........++++|+||+|++.+++.+.+.+.+|..++++|..++ .+++++|||||||||||++|+++|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 93 VDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp ----CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 33344445555667788999999999999999999999999999999999877 56789999999999999999999999
Q ss_pred hhhcceEEecchhhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 152 LDANFLKVVSRTIAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 152 ~~~~~~~v~~~~~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
++.+|+.++++++.+ +.+| +++|+| +|.++..|..
T Consensus 172 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 172 SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp TTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----
T ss_pred hcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC
Confidence 999999999998765 3344 366666 9999987753
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.48 E-value=6.3e-15 Score=150.81 Aligned_cols=103 Identities=33% Similarity=0.684 Sum_probs=87.1
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
....+.++++|+||+|++.+++.+++.+.+|+.++++|...+ .+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 345667899999999999999999999999999999998775 6789999999999999999999999999999999999
Q ss_pred hhhH----------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 163 TIAI----------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 163 ~~~~----------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
++.+ +.+| +++|+| +|.++..|+.
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 8854 3344 355555 9999988753
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.48 E-value=1.4e-14 Score=141.75 Aligned_cols=101 Identities=32% Similarity=0.596 Sum_probs=83.8
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+.|+++|+||+|.+.+++.+++.+.. +.+++.|..++...++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356789999999999999999998876 8899999999999999999999999999999999999999999999988875
Q ss_pred H----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 166 I----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 166 ~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
. +.+| +++|+| +|.+...|...
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~ 122 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhccccccc
Confidence 3 2233 355555 99999888543
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=138.54 Aligned_cols=131 Identities=28% Similarity=0.413 Sum_probs=98.9
Q ss_pred CCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhh-C--CeEEeeeceecc
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEI-G--DFAILIHAIVDK 449 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l-~--~~~i~~~~~~s~ 449 (515)
.+..+|+++. .+..+.....++-..++.+.-+..++.+.++ | ||||||.++++++.++ + ++.+.+..+.++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 3556777774 3344444444444444444323445566666 8 9999999999999998 5 455666689999
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|+|++++.++.+|+.|+..+||||||||+|+++++|...... ...+++++||++||++..
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTT---HHHHHHHHHHHHHHCSSS
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccch---HHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999998655333 345889999999999753
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=4.5e-14 Score=158.78 Aligned_cols=105 Identities=37% Similarity=0.747 Sum_probs=93.7
Q ss_pred ccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 83 ~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
......|.++|+|++|++++++.+.+++.+|+.+++.+..+++.+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhH----------HHHH--------HHHhhc-CCcccCCCCCC
Q psy11253 163 TIAI----------VLIF--------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 163 ~~~~----------~~~f--------~~~f~~-~d~~~~~r~~~ 187 (515)
++.+ +.+| |++|+| +|+++..|+..
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~ 589 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC
Confidence 8754 4445 466666 99999998643
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.41 E-value=1.7e-13 Score=145.26 Aligned_cols=97 Identities=35% Similarity=0.650 Sum_probs=86.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH--
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI-- 166 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~-- 166 (515)
++++|+||+|++.+++++++.+.. +.++..|..+++..++|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 889999999999999999999876 77889999999999999999999999999999999999999999999998753
Q ss_pred --------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 167 --------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 167 --------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
+.+| +++|+| +|+++..|..
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~ 141 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 141 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc
Confidence 3444 466666 9999988764
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.38 E-value=5.7e-13 Score=134.23 Aligned_cols=131 Identities=27% Similarity=0.417 Sum_probs=94.3
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCe--EEeeeceecc
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDF--AILIHAIVDK 449 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~--~i~~~~~~s~ 449 (515)
+.+..+|+++. .+..+.....++...++-+.-+...+.+.++ | ||||||.++++++.+++.. .+.+..+.++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 34556677763 3333333333344444444444455566666 8 9999999999999999854 4444578899
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
|+|++++.++.+|+.|+..+|+||||||||++..+|........ +++.++||.+||++.
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS---RRIKTELLVQMNGVG 149 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCT---HHHHHHHHHHHGGGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHH---HHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998855444433 477889999999874
No 29
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.37 E-value=4.8e-13 Score=141.02 Aligned_cols=123 Identities=34% Similarity=0.488 Sum_probs=91.8
Q ss_pred hhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHH
Q psy11253 390 AGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYA 465 (515)
Q Consensus 390 ~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A 465 (515)
+..+..+..++.+....-.+|...+.+.++ | ||||||.++++++.+++. +.+.++.....|+|.++++++.+|+.|
T Consensus 25 ~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A 104 (476)
T 2ce7_A 25 IEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA 104 (476)
T ss_dssp HHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444444433333467777788776 8 999999999999999885 444555788899999999999999999
Q ss_pred HhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 466 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 466 ~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
+..+||||||||+|+++.+|+....+.+.+..+++|+||.+||++..
T Consensus 105 ~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 105 KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999998654444555667889999999998754
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.33 E-value=6.3e-13 Score=129.09 Aligned_cols=100 Identities=34% Similarity=0.635 Sum_probs=82.2
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
..+.|+++|+||+|++.+++++++.+.. +.++..+..+++..++|++||||||||||++++++|+.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4577899999999999999999998776 677888999999999999999999999999999999999999999999877
Q ss_pred hH----------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 165 AI----------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 165 ~~----------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
.. +.+| +++|+| +|.++..|.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC
Confidence 43 2333 244444 888887664
No 31
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.32 E-value=1.6e-12 Score=132.86 Aligned_cols=132 Identities=27% Similarity=0.395 Sum_probs=90.1
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCCeE--Eeeeceecc
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDK 449 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~ 449 (515)
..+...|+++. .+..+......+...++.+.-+.....+.++ | ||||||.+|++++.+++... +.+..+.++
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34556777774 3334444443444444444434455566666 8 99999999999999999644 444578899
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|+|++++.++.+|..|+..+||||||||+|++...|...... ..++++++||.+||++..
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~---~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT---HHHHHHHHHHHHHHHCC-
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch---HHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999988554333 345788999999998753
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.32 E-value=3.5e-13 Score=134.49 Aligned_cols=134 Identities=25% Similarity=0.390 Sum_probs=96.0
Q ss_pred CCCCCCccch----hhhhhhhhhhhhccccccc-cccccccccccc-c-chhHHHHHHHhhhhhhCCeEEe--eeceecc
Q psy11253 379 TSSQSNDDIA----VAGYLNLAADFTHNFTDGL-AIGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAIL--IHAIVDK 449 (515)
Q Consensus 379 ~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~-alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~--~~~~~s~ 449 (515)
.+..+|+++. .+..+......+-..++-+ .+|.....+.++ | ||||||.++++++.+++...+. +..+.++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 3556676663 2233333333333333333 356666666666 8 9999999999999998864444 4478899
Q ss_pred cccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 450 YIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 450 ~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|+|+++++++.+|+.|+..+||||||||+|++...|............+++++||++||++..
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999888533222112224678999999998754
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.31 E-value=2.4e-12 Score=135.38 Aligned_cols=133 Identities=29% Similarity=0.426 Sum_probs=90.4
Q ss_pred ccCCCCCCccch----hhhhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhh-CC--eEEeeecee
Q psy11253 377 AKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEI-GD--FAILIHAIV 447 (515)
Q Consensus 377 ~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l-~~--~~i~~~~~~ 447 (515)
...+...|+++. .+..+......+-..++.+.-+..++.+.++ | ||||||.++++++.++ +. +.+.+..+.
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 345667788874 3344444333333333333323344566666 8 9999999999999998 53 455566889
Q ss_pred cccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 448 DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 448 s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
++|+|++++.++.+|+.|+..+|+||||||||++++.|....... .++++++||++||++..
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA---ARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGG---GHHHHHHHHTTTTCSSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccH---HHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999986554433 34788999999999753
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.28 E-value=1.6e-12 Score=137.32 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh--hcceEEecchh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSRTI 164 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~--~~~~~v~~~~~ 164 (515)
..|...|++|+|++++++.+.+.+.. -..+..+++++|||||||||||++|+++|++++ .+|+.++++++
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred cChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 45677899999999999999888754 223566789999999999999999999999999 99999999998
Q ss_pred hH---------HHHH-----------HHHhhc-CCcccCCCCCCCC
Q psy11253 165 AI---------VLIF-----------AVIFLH-MPNLCDSHGHSHH 189 (515)
Q Consensus 165 ~~---------~~~f-----------~~~f~~-~d~~~~~r~~~~~ 189 (515)
.+ +.+| +++|+| +|+++..|+....
T Consensus 102 ~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~ 147 (456)
T 2c9o_A 102 YSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPM 147 (456)
T ss_dssp CCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC------
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCC
Confidence 75 2333 355666 9999999976543
No 35
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.24 E-value=3.9e-12 Score=125.33 Aligned_cols=100 Identities=34% Similarity=0.635 Sum_probs=82.3
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
....|+++|+||+|++.+++++++.+.. +..+..+..+++..++|++||||||||||+++++++..++.+++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445889999999999999999998765 677888999999999999999999999999999999999999999998876
Q ss_pred hH----------HHHH--------HHHhhc-CCcccCCCC
Q psy11253 165 AI----------VLIF--------AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 165 ~~----------~~~f--------~~~f~~-~d~~~~~r~ 185 (515)
.. ..+| +++|+| +|.++..|.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc
Confidence 43 2334 244444 888887664
No 36
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=121.95 Aligned_cols=130 Identities=30% Similarity=0.468 Sum_probs=88.0
Q ss_pred CCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceeccc
Q psy11253 380 SSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKY 450 (515)
Q Consensus 380 ~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~ 450 (515)
+..+|++++ ++.++......+...++-+. +|..++.|.++ | ||||||.++++++..++...+.+ ..+.++|
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 456788885 34444433333333333332 66667777665 8 99999999999999988644444 4678899
Q ss_pred ccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 451 IGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 451 ~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
+|+++++|+.+|+.|+...|||+|+||+|.++..|..... ....+.+++++.+|||...
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCS
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999987743221 2234678999999999865
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=2.4e-11 Score=119.66 Aligned_cols=105 Identities=41% Similarity=0.654 Sum_probs=89.6
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCCeE--EeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFA--ILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~--i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+|.....+.++ | ||||||.++++++..++... +.+..+.+.|.|++++.++.+|+.|+...|+||||||+|.++.+
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 125 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBC
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhccc
Confidence 45556666666 8 99999999999999998544 44457889999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|.....+.+....+.++++|.+|+++...
T Consensus 126 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 126 RTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp CSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred CccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 97766666777788999999999987653
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.22 E-value=3e-11 Score=117.38 Aligned_cols=105 Identities=35% Similarity=0.542 Sum_probs=84.0
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+|...+.+.++ | ||||||.++++++..++. +.+....+.+.|.|++++.++.+|+.|+...|||+||||+|.+...
T Consensus 40 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~ 119 (257)
T 1lv7_A 40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119 (257)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccC
Confidence 55566666666 8 999999999999999884 3444457788899999999999999999999999999999999988
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|.....+......+.++++|++||++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp CSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 85443344445567899999999987653
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.17 E-value=1e-11 Score=123.45 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=68.2
Q ss_pred cccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHH----HhhCCeEEEechhhhh
Q psy11253 410 GASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYA----RDHQPCIIFMDEIDAI 481 (515)
Q Consensus 410 g~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A----~~~~p~ilf~DE~D~~ 481 (515)
+...+.+.++ | ||||||.++++++.+++. +.+.++.+.++|+|++++.++.+|+.| +..+||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 4445566666 8 999999999999999985 555556889999999999999999999 5778999999999999
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHccCCC
Q psy11253 482 GGRRFSEGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 482 ~~~r~~~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
++++.+...+ ....+.+.+.||+.||+..
T Consensus 112 ~~~~~~~~~~-~~~~~~v~~~Ll~~ld~~~ 140 (293)
T 3t15_A 112 AGRMGGTTQY-TVNNQMVNATLMNIADNPT 140 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC
T ss_pred cCCCCCCccc-cchHHHHHHHHHHHhcccc
Confidence 9876432221 1122356688888888543
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.17 E-value=3.6e-11 Score=116.73 Aligned_cols=105 Identities=31% Similarity=0.489 Sum_probs=72.9
Q ss_pred cccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 408 AIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 408 alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
.+|...+.+.++ | ||||||.++++++.+++. +.+.+....+.|.|++++.++.+|+.|+...|+||||||+|.++.
T Consensus 33 ~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 33 QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp ---CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-----
T ss_pred HcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc
Confidence 466667777776 8 999999999999999885 444455788899999999999999999999999999999999998
Q ss_pred CCCCCCCC-chHHHHHHHHHHHHHccCCCC
Q psy11253 484 RRFSEGTS-ADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 484 ~r~~~~~~-~~~~~~~~~~~lL~~md~~~~ 512 (515)
+|.....+ .+....+.+++||++|+++..
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 113 KRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------------CHHHHHHHHHHHTCCT
T ss_pred cccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 88433211 123345778999999998654
No 41
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.17 E-value=2.9e-10 Score=127.52 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=62.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
.+-+++++.|.+..++.+.+.+.. ..++++||+||||||||++|+++|..+ +.+++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 345788999999999998887643 245789999999999999999999988 556777
Q ss_pred EecchhhH------------HHHH--------HHHhhc-CCcccCCCCC
Q psy11253 159 VVSRTIAI------------VLIF--------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 159 v~~~~~~~------------~~~f--------~~~f~~-~d~~~~~r~~ 186 (515)
++.+.+.. +.+| +++|+| +|.++..+..
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 296 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA 296 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC
Confidence 66555431 2333 355666 9999876653
No 42
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.16 E-value=4.3e-11 Score=126.88 Aligned_cols=122 Identities=31% Similarity=0.454 Sum_probs=93.2
Q ss_pred hhhhhhhhhhccccccccccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHH
Q psy11253 391 GYLNLAADFTHNFTDGLAIGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYAR 466 (515)
Q Consensus 391 ~~l~~~~~~lh~~~dg~alg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~ 466 (515)
..+..+..++.+....-.+|...+.+.++ | ||||||.++++++.+++. +.+....+...|+|.++++++.+|+.|+
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~ 120 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 120 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH
Confidence 33444444443332223466677777666 8 999999999999999875 4444457788899999999999999999
Q ss_pred hhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 467 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 467 ~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
..+|||+||||||+++..|.....+...+..+.+|++|++||++..
T Consensus 121 ~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 8889999999999999888543333455667889999999998865
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=118.50 Aligned_cols=97 Identities=31% Similarity=0.476 Sum_probs=76.8
Q ss_pred cccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCC
Q psy11253 412 SYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFS 487 (515)
Q Consensus 412 ~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~ 487 (515)
....+.++ | ||||||.++++++.+++. +.+.+..+.++|.|++++.++.+|..|+...|+||||||||.++..|..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 34455555 8 999999999999999985 4455568899999999999999999999999999999999999998854
Q ss_pred CCCCchHHHHHHHHHHHHHccCCC
Q psy11253 488 EGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 488 ~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
+... ...+++++||.+|++..
T Consensus 195 ~~~~---~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 195 GEHE---SSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp ---C---HHHHHHHHHHHHHHC--
T ss_pred Ccch---HHHHHHHHHHHHHhccc
Confidence 4332 34578899999999865
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.11 E-value=1.1e-11 Score=123.18 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=47.9
Q ss_pred hcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH----------HHHH------------HHHhhc-CC
Q psy11253 122 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI----------VLIF------------AVIFLH-MP 178 (515)
Q Consensus 122 ~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~----------~~~f------------~~~f~~-~d 178 (515)
..+.++|+++|||||||||||++|+++|++++.+|+.++++++.+ +.+| +++|+| +|
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346788999999999999999999999999999999999998854 2334 456655 99
Q ss_pred cccCCCCC
Q psy11253 179 NLCDSHGH 186 (515)
Q Consensus 179 ~~~~~r~~ 186 (515)
+++..++.
T Consensus 110 ~~~~~~~~ 117 (293)
T 3t15_A 110 AGAGRMGG 117 (293)
T ss_dssp --------
T ss_pred hhcCCCCC
Confidence 99986653
No 45
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.11 E-value=2.5e-10 Score=128.06 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=49.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcce
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFL 157 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~ 157 (515)
..+-.+++|.|.++.++.+.+.+.. ..++++|||||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3456788999999999998887643 345679999999999999999999997 77888
Q ss_pred EEec
Q psy11253 158 KVVS 161 (515)
Q Consensus 158 ~v~~ 161 (515)
.++.
T Consensus 241 ~~~~ 244 (758)
T 3pxi_A 241 TLDM 244 (758)
T ss_dssp CC--
T ss_pred Eecc
Confidence 7766
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.10 E-value=6.3e-11 Score=125.69 Aligned_cols=102 Identities=33% Similarity=0.459 Sum_probs=85.3
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+|+..+.+.++ | ||||||.++++++.+++. +.+.+..+.++|.|+++..++.+|+.|+..+||||||||||+++.+
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~ 312 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBC
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccc
Confidence 56667777776 8 999999999999999885 4455568899999999999999999999999999999999999998
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
|..... +...+++++||..||+....
T Consensus 313 ~~~~~~---~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 313 REKTHG---EVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp TTSCCC---HHHHHHHHHHHHHHHHSCTT
T ss_pred cccccc---hHHHHHHHHHHHHhhccccC
Confidence 854433 23457889999999976543
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.06 E-value=3.3e-10 Score=112.26 Aligned_cols=96 Identities=31% Similarity=0.521 Sum_probs=76.5
Q ss_pred cccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCC
Q psy11253 414 LAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG 489 (515)
Q Consensus 414 ~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~ 489 (515)
..+.++ | ||||||.++++++.+++. +.+.+..+.++|.|++++.++.+|..|+...|+||||||+|+++..|....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 133 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE 133 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC----
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc
Confidence 345555 8 999999999999999985 445556888999999999999999999999999999999999999885443
Q ss_pred CCchHHHHHHHHHHHHHccCCCC
Q psy11253 490 TSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 490 ~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
.... .+..++||.+||++..
T Consensus 134 ~~~~---~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 134 HEAS---RRLKTEFLVEFDGLPG 153 (297)
T ss_dssp -CCS---HHHHHHHHHHHHHCC-
T ss_pred chHH---HHHHHHHHHHHhcccc
Confidence 3333 3667899999988754
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=118.59 Aligned_cols=96 Identities=32% Similarity=0.511 Sum_probs=67.9
Q ss_pred cccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCC
Q psy11253 414 LAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG 489 (515)
Q Consensus 414 ~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~ 489 (515)
..+.++ | ||||||.++++++.+++. +.+.+..+.+.|.|+++..++.+|+.|+..+|+||||||||.++..|....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~ 227 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE 227 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc
Confidence 445555 8 999999999999999885 455556889999999999999999999999999999999999998885443
Q ss_pred CCchHHHHHHHHHHHHHccCCCC
Q psy11253 490 TSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 490 ~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
... ..++.++||..|+++..
T Consensus 228 ~~~---~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 228 HDA---SRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp -CT---HHHHHHHHHHHHHHHC-
T ss_pred chH---HHHHHHHHHHHhhcccc
Confidence 333 34778899999987654
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.05 E-value=9.1e-11 Score=116.87 Aligned_cols=91 Identities=24% Similarity=0.332 Sum_probs=72.6
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCC---CceeecCCCChhhHHHHHHHHHhhh-------cceEEecch
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK---GCLLYGPPGTGKTLLARAVASQLDA-------NFLKVVSRT 163 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~---giLl~GPpGtGKT~~a~~ia~~~~~-------~~~~v~~~~ 163 (515)
.+|+|++.+++.+.+.+..+. .+..+.++|+.+++ ++|||||||||||++|+++|+.++. +++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 479999999999999998855 47777778876544 4999999999999999999999965 899999988
Q ss_pred hhH----------HHHH-----HHHhhc-CCcccCCCC
Q psy11253 164 IAI----------VLIF-----AVIFLH-MPNLCDSHG 185 (515)
Q Consensus 164 ~~~----------~~~f-----~~~f~~-~d~~~~~r~ 185 (515)
+.+ ..+| +++|+| +|.++..++
T Consensus 110 l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 147 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDN 147 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-
T ss_pred hhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCC
Confidence 854 2333 355555 999997664
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.96 E-value=5.2e-10 Score=116.43 Aligned_cols=73 Identities=27% Similarity=0.371 Sum_probs=64.0
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccC-CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGIT-PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~-~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
++|+|++++|+.+..++..|++++.++..++.. +++++||+||||||||++|+++|+.++.+|+.++++.+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 479999999999999999988888877766543 5789999999999999999999999999999999877644
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.93 E-value=3.3e-10 Score=115.89 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=68.4
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhh-ccc-CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH------
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQR-VGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI------ 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~-~g~-~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~------ 166 (515)
.|.|++.+++.+..++..++........ .+. .+++++||+||||||||++|+++|+.++.||+.++++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3789999999999998654332221111 111 25678999999999999999999999999999999988752
Q ss_pred ------HHHH------------HHHhhc-CCcccCCCCCC
Q psy11253 167 ------VLIF------------AVIFLH-MPNLCDSHGHS 187 (515)
Q Consensus 167 ------~~~f------------~~~f~~-~d~~~~~r~~~ 187 (515)
..+| +++|+| +|.+...|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~ 135 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNP 135 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccc
Confidence 1111 256666 99999887643
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.90 E-value=8.5e-11 Score=114.75 Aligned_cols=104 Identities=37% Similarity=0.578 Sum_probs=77.9
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
+|...+.+.++ | ||||||.++++++.+++. +.+.+..+.+.|.|++++.++.+|+.|+...|+||||||+|.+..+
T Consensus 39 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 118 (268)
T 2r62_A 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118 (268)
T ss_dssp HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-
T ss_pred CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhccc
Confidence 45566666666 8 999999999999999874 5555567888999999999999999999999999999999999988
Q ss_pred CCCCC-CCchHHHHHHHHHHHHHccCCCC
Q psy11253 485 RFSEG-TSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 485 r~~~~-~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|..+. .+.+....+.+++||.+||++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 119 RAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ---------CCCSCSSTTTTTTTTTCSSC
T ss_pred ccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 73221 11111223567899999988754
No 53
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=3.2e-09 Score=102.69 Aligned_cols=104 Identities=35% Similarity=0.535 Sum_probs=77.8
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
++...+.+..+ | ||+|||.+++.++..+....+.+ ....+.+.|+.++.++.+|+.++...|+++|+||+|.++..
T Consensus 44 ~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~ 123 (254)
T 1ixz_A 44 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 123 (254)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcc
Confidence 44455556555 8 99999999999999887544444 35667889999999999999999888999999999999988
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|.........+..+.++++|.+|++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 124 RGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp --------CHHHHHHHHHHHHHHHTCCT
T ss_pred cCccccccchHHHHHHHHHHHHHhCCCC
Confidence 7433223345567889999999998764
No 54
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.83 E-value=3.6e-10 Score=133.66 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=49.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccc----------hhhhhh------cccC----------CCCC--ceeecCCCC
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLN----------PELFQR------VGIT----------PPKG--CLLYGPPGT 139 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~----------~~~~~~------~g~~----------~~~g--iLl~GPpGt 139 (515)
.+.++|+||+|+++.|+++.+++++|+.+ ++.++. .|+. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45699999999999999999999999955 667776 4444 5677 999999999
Q ss_pred hhhHHHHHHHHHhhhc
Q psy11253 140 GKTLLARAVASQLDAN 155 (515)
Q Consensus 140 GKT~~a~~ia~~~~~~ 155 (515)
|||++|++++.+....
T Consensus 1094 GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhhhc
Confidence 9999999999988665
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.83 E-value=3.1e-09 Score=107.16 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=66.6
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
++..+.+|+++.|.+..++.+.+.+..... .-.++.++|||||||||||++|+++|+.++.+|+.++++.+.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 344556999999999999999998865211 113567899999999999999999999999999999998765
Q ss_pred HHH----HH------HHHhhc-CCccc
Q psy11253 166 IVL----IF------AVIFLH-MPNLC 181 (515)
Q Consensus 166 ~~~----~f------~~~f~~-~d~~~ 181 (515)
... .+ +++|+| +|.+.
T Consensus 93 ~~~~~~~~~~~~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 93 KSGDLAAILTNLSEGDILFIDEIHRLS 119 (338)
T ss_dssp SHHHHHHHHHTCCTTCEEEEETGGGCC
T ss_pred chhHHHHHHHhccCCCEEEEechhhcC
Confidence 421 11 244444 88775
No 56
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.81 E-value=2.2e-09 Score=106.48 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=57.4
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcc-cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
++|.|.+.+++.+..++..++....+...+. -..++++|||||||||||++|+++|+.++.+++.++++++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 4689999999999998876544333322221 13568899999999999999999999999999999988763
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=4.3e-09 Score=112.66 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=69.5
Q ss_pred cccccCCCCCCcccccCCHHHHHHHHHHHhh-cccchhhhhhcccC---CCCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 82 NMSHEDPGDITYSAIGGLSEQIRELREVIEL-PLLNPELFQRVGIT---PPKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 82 ~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~-~~~~~~~~~~~g~~---~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.+..++.++.+|+|+.|.+.+++.+++.+.. ...++..++..|.. +++++|||||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4556677788999999999999999999864 22233445555543 5678999999999999999999999999999
Q ss_pred EEecchhhHH
Q psy11253 158 KVVSRTIAIV 167 (515)
Q Consensus 158 ~v~~~~~~~~ 167 (515)
.++++++.+.
T Consensus 107 ~in~s~~~~~ 116 (516)
T 1sxj_A 107 EQNASDVRSK 116 (516)
T ss_dssp EECTTSCCCH
T ss_pred EEeCCCcchH
Confidence 9999887653
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.74 E-value=1.6e-09 Score=114.24 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=63.4
Q ss_pred cccccccccc-c-chhHHHHHHHhhhhhhC--C--eEEeeeceecccccchHHHHHHHHHHH---HhhCCeEEEechhhh
Q psy11253 410 GASYLAGKHV-G-IVTTITILFHEIPHEIG--D--FAILIHAIVDKYIGESARLIREMFNYA---RDHQPCIIFMDEIDA 480 (515)
Q Consensus 410 g~~~~~~~~~-G-~gtgkt~~~~~i~~~l~--~--~~i~~~~~~s~~~g~~~~~i~~~f~~A---~~~~p~ilf~DE~D~ 480 (515)
|...+.+.++ | ||||||.+|++++.+++ . +.+..+.+.++|+|++++ ++.+|+.| +..+||||||||+|+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhh
Confidence 3334455665 8 99999999999999998 4 445555889999999998 99999999 888999999999999
Q ss_pred hccCCCCC
Q psy11253 481 IGGRRFSE 488 (515)
Q Consensus 481 ~~~~r~~~ 488 (515)
++++|...
T Consensus 138 l~~~r~~~ 145 (456)
T 2c9o_A 138 LTPCETEN 145 (456)
T ss_dssp EEEC----
T ss_pred cccccCCC
Confidence 99999544
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.74 E-value=5.3e-09 Score=107.31 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=54.9
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhh-----------------hcccCCCCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQ-----------------RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~-----------------~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
+|+|++.+++.+..++..++....... .-...++.++|||||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999998855443332211 001134678999999999999999999999999999
Q ss_pred EEecchhh
Q psy11253 158 KVVSRTIA 165 (515)
Q Consensus 158 ~v~~~~~~ 165 (515)
.+++..+.
T Consensus 102 ~~~~~~~~ 109 (376)
T 1um8_A 102 ISDATSLT 109 (376)
T ss_dssp EEEGGGCC
T ss_pred Eecchhhh
Confidence 99988763
No 60
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=2.7e-08 Score=97.58 Aligned_cols=104 Identities=35% Similarity=0.535 Sum_probs=77.7
Q ss_pred ccccccccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccC
Q psy11253 409 IGASYLAGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 409 lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~ 484 (515)
++...+.+..+ | +|+|||.+++.++..+....+.+ ..+...+.|+.++.++.+|+.++...|+++|+||+|.++..
T Consensus 68 ~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~ 147 (278)
T 1iy2_A 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147 (278)
T ss_dssp TTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC
T ss_pred cCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcc
Confidence 34444555555 8 99999999999999887544444 35667788999999999999999888999999999999887
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
|.........+..+.++++|.+|++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 148 RGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp --------CHHHHHHHHHHHHHHTTCCT
T ss_pred cccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 7432222344566889999999998764
No 61
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.65 E-value=1.3e-08 Score=103.91 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=72.7
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCCeEEee--ecee-cccccch-HHHHHHHHHHH----HhhCCeEEEechhhhhccC
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIV-DKYIGES-ARLIREMFNYA----RDHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~-s~~~g~~-~~~i~~~f~~A----~~~~p~ilf~DE~D~~~~~ 484 (515)
.+.++ | ||||||.+|++++..++...+.+ ..+. +.|+|++ ++.++.+|+.+ +...|+||||||||.+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 34444 8 99999999999999998644444 4454 3489988 77889999887 5556899999999999998
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 485 RFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 485 r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
|...+.+.+.....+.+.||+.||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccchHHHHHHHHHHhcCc
Confidence 86655555544456889999999954
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.63 E-value=2.4e-08 Score=97.60 Aligned_cols=89 Identities=27% Similarity=0.339 Sum_probs=60.3
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH-------
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI------- 166 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~------- 166 (515)
..+.|.+...+.+.+.... ..+.+...+..+++++|||||||||||++|+++|+.++.+|+.+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4566777666665553211 022233334566788999999999999999999999999999998765210
Q ss_pred ----HHHH--------HHHhh-cCCcccCCCC
Q psy11253 167 ----VLIF--------AVIFL-HMPNLCDSHG 185 (515)
Q Consensus 167 ----~~~f--------~~~f~-~~d~~~~~r~ 185 (515)
+.+| +++|+ |+|.++..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 2333 24444 4999986654
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.61 E-value=3.5e-08 Score=89.84 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=52.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
++.+|+++.|.+++++.+.+.+.. ..+++++|+||||||||++|+++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 345788999999999988887632 345779999999999999999999997 678888
Q ss_pred Eecchhh
Q psy11253 159 VVSRTIA 165 (515)
Q Consensus 159 v~~~~~~ 165 (515)
+++.++.
T Consensus 84 ~~~~~~~ 90 (195)
T 1jbk_A 84 LDMGALV 90 (195)
T ss_dssp ECHHHHH
T ss_pred eeHHHHh
Confidence 8877764
No 64
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.59 E-value=5.1e-08 Score=88.56 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=52.1
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceEE
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKV 159 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~v 159 (515)
+.+++++.|.+..++.+.+.+.. ..++++||+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45788999999988888877632 235679999999999999999999998 7788888
Q ss_pred ecchhh
Q psy11253 160 VSRTIA 165 (515)
Q Consensus 160 ~~~~~~ 165 (515)
+...+.
T Consensus 85 ~~~~~~ 90 (187)
T 2p65_A 85 DLSSLI 90 (187)
T ss_dssp CHHHHH
T ss_pred eHHHhh
Confidence 877654
No 65
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.58 E-value=3.2e-08 Score=87.36 Aligned_cols=60 Identities=27% Similarity=0.285 Sum_probs=47.2
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
++.|.+...+.+.+.+..- ...+..+||+||||||||++|+++++.. +.||+ ++++.+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 5678888888887776431 1245679999999999999999999987 78999 99988754
No 66
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.57 E-value=2.8e-08 Score=117.77 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=75.2
Q ss_pred ccccc--ccc-c-chhHHHHHHHhhhhhhCC-----eEEeeece------------ecccccc----hHHHHHHHHHHHH
Q psy11253 412 SYLAG--KHV-G-IVTTITILFHEIPHEIGD-----FAILIHAI------------VDKYIGE----SARLIREMFNYAR 466 (515)
Q Consensus 412 ~~~~~--~~~-G-~gtgkt~~~~~i~~~l~~-----~~i~~~~~------------~s~~~g~----~~~~i~~~f~~A~ 466 (515)
.++++ .++ | ||||||.+|++++.+... ..|..... +++|+++ +|+.++.+|..||
T Consensus 1078 G~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar 1157 (1706)
T 3cmw_A 1078 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1157 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH
Confidence 35666 454 8 999999999999976542 13333332 3889999 9999999999999
Q ss_pred hhCCeEEEechhhhhccCCC---CCCCCchHHHHHHHHHHHHHccC
Q psy11253 467 DHQPCIIFMDEIDAIGGRRF---SEGTSADREIQRTLMELLNQMDG 509 (515)
Q Consensus 467 ~~~p~ilf~DE~D~~~~~r~---~~~~~~~~~~~~~~~~lL~~md~ 509 (515)
+.+||+||+||+|++++.|. ........-..|++|++|++||+
T Consensus 1158 ~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1158 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999999952 12211124456889999999998
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.57 E-value=7.8e-09 Score=91.12 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=48.1
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
++.|.+..++.+++.+... . ..+.++||+||||||||++|+++++..+ +|+.++++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~ 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH
T ss_pred CceeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh
Confidence 5678888888888887541 1 2456799999999999999999999988 999999998765
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.56 E-value=6.2e-08 Score=98.69 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=56.9
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh--cceEEecchh
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA--NFLKVVSRTI 164 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~--~~~~v~~~~~ 164 (515)
-.|..+|+++.|.+..++.+...+.. . ..+..+++++|||||||||||++|+++|+.++. ||+.+++..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~-------~-~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEM-------I-REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHH-------H-HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 34566799999999999887665533 1 124345688999999999999999999999985 8899998876
Q ss_pred hH
Q psy11253 165 AI 166 (515)
Q Consensus 165 ~~ 166 (515)
.+
T Consensus 109 ~~ 110 (368)
T 3uk6_A 109 FS 110 (368)
T ss_dssp SC
T ss_pred hh
Confidence 54
No 69
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.56 E-value=3.8e-08 Score=105.90 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=64.7
Q ss_pred HHHHhhcCCCcccccccccccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHH
Q psy11253 66 LTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLA 145 (515)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a 145 (515)
...+..+|...... ......+....-++|++|++++++.+.+.+.......+. ++..+||+||||||||++|
T Consensus 54 l~~~~~lp~~~~~~-~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 54 IDWLVALPWTDETD-DKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp HHHHHHSCSSCCCC-CCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHH
T ss_pred HHHHhcCCCCcccc-ccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHH
Confidence 34444566432221 223344555667789999999999998877653222111 4556999999999999999
Q ss_pred HHHHHHhhhcceEEecchh
Q psy11253 146 RAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 146 ~~ia~~~~~~~~~v~~~~~ 164 (515)
+++|..++.+++.+++..+
T Consensus 126 r~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 126 KSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcCCCeEEEEeccc
Confidence 9999999999999988764
No 70
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=3.9e-08 Score=103.16 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=62.3
Q ss_pred CCCCCcccccCCHHHH---HHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 88 PGDITYSAIGGLSEQI---RELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~---~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
..+.+++++.|.+..+ +.++..+.. ....++|||||||||||++|+++|+.++.+|+.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4457899999999998 677777754 123679999999999999999999999999999998764
Q ss_pred hH---HHHH------------HHHhhc-CCcccCC
Q psy11253 165 AI---VLIF------------AVIFLH-MPNLCDS 183 (515)
Q Consensus 165 ~~---~~~f------------~~~f~~-~d~~~~~ 183 (515)
.. +.++ .++|+| +|.+...
T Consensus 87 ~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 87 GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---
T ss_pred CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH
Confidence 33 2222 255555 9988643
No 71
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.54 E-value=9.1e-08 Score=95.55 Aligned_cols=72 Identities=29% Similarity=0.376 Sum_probs=59.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+..+.+|+++.|.+..++.+.+.+... ...+ ..++++||+||||||||++|+++++.++.+|+.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAA-------KARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHH-------HccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 445668999999999999998887542 1111 35678999999999999999999999999999999887643
No 72
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.48 E-value=1.2e-07 Score=94.87 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=59.0
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
.++..+.+|+++.|.+..++.+++.+.. + ..++.+|++||||||||++|+++|++++.+++.+++++.
T Consensus 17 ~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 4455677899999999999999998862 1 345668889999999999999999999999999998876
Q ss_pred hH
Q psy11253 165 AI 166 (515)
Q Consensus 165 ~~ 166 (515)
..
T Consensus 85 ~~ 86 (324)
T 3u61_B 85 KI 86 (324)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.43 E-value=2.2e-07 Score=92.11 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=65.2
Q ss_pred c-chhHHHHHHHhhhhhh---------CCeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCC
Q psy11253 420 G-IVTTITILFHEIPHEI---------GDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG 489 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l---------~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~ 489 (515)
| ||||||.++++++..+ .+..+....+.+.|.|.+++.+..+|+.+ .++||||||+|.+++.+...
T Consensus 74 G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~- 149 (309)
T 3syl_A 74 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER- 149 (309)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc-
Confidence 8 9999999999999887 34555556888999999999999999987 47899999999999776332
Q ss_pred CCchHHHHHHHHHHHHHccCC
Q psy11253 490 TSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 490 ~~~~~~~~~~~~~lL~~md~~ 510 (515)
..+. .+++.|+..|+..
T Consensus 150 -~~~~---~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 150 -DYGQ---EAIEILLQVMENN 166 (309)
T ss_dssp -CCTH---HHHHHHHHHHHHC
T ss_pred -cccH---HHHHHHHHHHhcC
Confidence 2222 5677888887754
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.38 E-value=3.9e-07 Score=88.47 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=51.3
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHH
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIV 167 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~ 167 (515)
.+|+++.|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++++++...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 478899999999998887765411 2347899999999999999999999885 68999999988654
Q ss_pred HHHHHHh
Q psy11253 168 LIFAVIF 174 (515)
Q Consensus 168 ~~f~~~f 174 (515)
.+-..+|
T Consensus 72 ~~~~~l~ 78 (265)
T 2bjv_A 72 LLDSELF 78 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3333333
No 75
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=8.6e-07 Score=86.43 Aligned_cols=93 Identities=23% Similarity=0.172 Sum_probs=65.9
Q ss_pred cccccc-c-chhHHHHHHHhhhhhhCCeEEeeeceecccccch----HHHHHHHHHHHHhhCCeEEEechhhhhccCCCC
Q psy11253 414 LAGKHV-G-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGES----ARLIREMFNYARDHQPCIIFMDEIDAIGGRRFS 487 (515)
Q Consensus 414 ~~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~----~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~ 487 (515)
..+.++ | ||||||.++++++..++...+.+.. .+.+.|.+ .+.++.+|+.|+...|+||||||||.+++.+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS-PDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC-GGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC-HHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 344555 8 9999999999999998864444321 12344444 478899999998888999999999999887743
Q ss_pred CCCCchHHHHHHHHHHHHHccCCC
Q psy11253 488 EGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 488 ~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
... ... .+++.|+..+++..
T Consensus 143 ~~~-~~~---~~l~~L~~~~~~~~ 162 (272)
T 1d2n_A 143 GPR-FSN---LVLQALLVLLKKAP 162 (272)
T ss_dssp TTB-CCH---HHHHHHHHHTTCCC
T ss_pred Chh-HHH---HHHHHHHHHhcCcc
Confidence 322 222 45667777777654
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.34 E-value=7e-07 Score=83.10 Aligned_cols=68 Identities=32% Similarity=0.382 Sum_probs=54.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEEe
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVV 160 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~ 160 (515)
+..++.+|+++.|.+..++.+.+.+... .+..++||||||||||++++++++++ ..+++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 3456678999999999999999887541 23459999999999999999999986 45678888
Q ss_pred cchhhH
Q psy11253 161 SRTIAI 166 (515)
Q Consensus 161 ~~~~~~ 166 (515)
+++...
T Consensus 76 ~~~~~~ 81 (226)
T 2chg_A 76 ASDERG 81 (226)
T ss_dssp TTCTTC
T ss_pred cccccC
Confidence 766543
No 77
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.30 E-value=6.6e-07 Score=88.75 Aligned_cols=67 Identities=33% Similarity=0.401 Sum_probs=54.3
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEE
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKV 159 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v 159 (515)
.++..+.+|+++.|.+..++.+.+.+.. + ....+|||||||||||++|+++++.+ +.+++.+
T Consensus 8 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 3556778899999999999998887643 1 22349999999999999999999997 5678899
Q ss_pred ecchh
Q psy11253 160 VSRTI 164 (515)
Q Consensus 160 ~~~~~ 164 (515)
++++.
T Consensus 75 ~~~~~ 79 (319)
T 2chq_A 75 NASDE 79 (319)
T ss_dssp ETTST
T ss_pred eCccc
Confidence 88764
No 78
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1e-06 Score=80.19 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=48.8
Q ss_pred CCCCcccccCCH-HHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecch
Q psy11253 89 GDITYSAIGGLS-EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRT 163 (515)
Q Consensus 89 ~~~~~~di~g~~-~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~ 163 (515)
.+.+|+++.+.+ .+++.+..+.. ....+.+..+++++|+||||||||++++++++.+ +..++.++..+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRV-------FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHH-------HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHH-------HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456788877633 33333332222 2334445556889999999999999999999988 55777888877
Q ss_pred hhH
Q psy11253 164 IAI 166 (515)
Q Consensus 164 ~~~ 166 (515)
+..
T Consensus 78 ~~~ 80 (180)
T 3ec2_A 78 LIF 80 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 79
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.27 E-value=8.3e-07 Score=89.08 Aligned_cols=55 Identities=27% Similarity=0.266 Sum_probs=47.7
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+.+|.|.++.++.+...+.. .+++|||||||||||++|+++|+.++.+++.+++.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 46788999998888776633 26899999999999999999999999999999874
No 80
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=4.5e-07 Score=91.50 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=53.5
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh------cceE
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA------NFLK 158 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~------~~~~ 158 (515)
.++.++.+|+++.|.+++++.+...+.. ..+.++|||||||||||++|+++|+.++. .++.
T Consensus 28 ~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 94 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILE 94 (353)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEE
Confidence 3455677899999999999998888743 11234999999999999999999999764 4777
Q ss_pred Eecchh
Q psy11253 159 VVSRTI 164 (515)
Q Consensus 159 v~~~~~ 164 (515)
+++++.
T Consensus 95 ~~~~~~ 100 (353)
T 1sxj_D 95 LNASDE 100 (353)
T ss_dssp ECSSSC
T ss_pred Eccccc
Confidence 887764
No 81
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.4e-06 Score=86.66 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=54.8
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh-----hcceEE
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKV 159 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~-----~~~~~v 159 (515)
.++.++.+|+++.|.+..++.+...+.. + ...++|||||||||||++|+++++.+. .+++.+
T Consensus 16 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~ 82 (327)
T 1iqp_A 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82 (327)
T ss_dssp HHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe
Confidence 3456678899999999999999988754 1 223499999999999999999999974 457888
Q ss_pred ecchhhH
Q psy11253 160 VSRTIAI 166 (515)
Q Consensus 160 ~~~~~~~ 166 (515)
++++..+
T Consensus 83 ~~~~~~~ 89 (327)
T 1iqp_A 83 NASDERG 89 (327)
T ss_dssp ETTCHHH
T ss_pred eccccCc
Confidence 8776543
No 82
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.22 E-value=2.1e-06 Score=85.88 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCCCCccccc-C--CHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEec
Q psy11253 88 PGDITYSAIG-G--LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVS 161 (515)
Q Consensus 88 ~~~~~~~di~-g--~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~ 161 (515)
.|..+|+++. | .....+.++..+..| + ..+++++||||||||||++|+++++.+ +.+++.+++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3556788886 3 444455555555432 1 245789999999999999999999999 889999999
Q ss_pred chhhH
Q psy11253 162 RTIAI 166 (515)
Q Consensus 162 ~~~~~ 166 (515)
.++..
T Consensus 74 ~~~~~ 78 (324)
T 1l8q_A 74 DDFAQ 78 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.20 E-value=1.1e-06 Score=99.65 Aligned_cols=85 Identities=15% Similarity=0.348 Sum_probs=56.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcceE
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLK 158 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~~ 158 (515)
.+-+++++.|.++.++.+.+.+.. ..++++||+||||||||++|+++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 356789999999888888776632 345689999999999999999999998 788999
Q ss_pred EecchhhH------------HHHH---------HHHhhc-CCcccCCCCC
Q psy11253 159 VVSRTIAI------------VLIF---------AVIFLH-MPNLCDSHGH 186 (515)
Q Consensus 159 v~~~~~~~------------~~~f---------~~~f~~-~d~~~~~r~~ 186 (515)
++++.+.. +.+| +++|+| ++.+...+..
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~ 281 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA 281 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc
Confidence 99887752 2232 266656 9999876543
No 84
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.19 E-value=2.8e-06 Score=80.28 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCCCCCcccccC---CHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEe
Q psy11253 87 DPGDITYSAIGG---LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVV 160 (515)
Q Consensus 87 ~~~~~~~~di~g---~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~ 160 (515)
..|..+|+++.+ .+..++.++..+.. ..+++++||||||||||++|+++++++. .+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 21 LPDDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CCTTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 344578888886 24555666555432 2457899999999999999999999987 5678888
Q ss_pred cchhhH
Q psy11253 161 SRTIAI 166 (515)
Q Consensus 161 ~~~~~~ 166 (515)
++++..
T Consensus 88 ~~~~~~ 93 (242)
T 3bos_A 88 LGIHAS 93 (242)
T ss_dssp GGGGGG
T ss_pred HHHHHH
Confidence 877654
No 85
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.17 E-value=2.8e-06 Score=85.57 Aligned_cols=68 Identities=28% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
...+++++.|.+.+++.+...+.... .-+ .++..++||||||||||++++++|+.++.++...+++.+
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 34578899999988888877764311 001 345779999999999999999999999999888877654
No 86
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.17 E-value=2.3e-06 Score=84.71 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=51.1
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
.++.|.+.+++.+...+...... .. ..-.+...+||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CS-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CC-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 36789999999999888652100 00 001223469999999999999999999998 56799999887654
No 87
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.17 E-value=1.2e-06 Score=92.55 Aligned_cols=62 Identities=26% Similarity=0.408 Sum_probs=49.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh----------hhcce
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFL 157 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~----------~~~~~ 157 (515)
..+-++++|.|.+..++.+.+.+.. ...+++|||||||||||++|+++|..+ +.+|+
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4456789999999999998887643 234679999999999999999999997 77888
Q ss_pred EEecc
Q psy11253 158 KVVSR 162 (515)
Q Consensus 158 ~v~~~ 162 (515)
.++++
T Consensus 241 ~l~~~ 245 (468)
T 3pxg_A 241 TLDMG 245 (468)
T ss_dssp CC---
T ss_pred EeeCC
Confidence 88876
No 88
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.16 E-value=1.1e-06 Score=88.66 Aligned_cols=55 Identities=29% Similarity=0.314 Sum_probs=42.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
...++.+|+++.|.+..++.+...... ....++|||||||||||++|+++|+.++
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345678999999999877765444322 1235699999999999999999999886
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.7e-06 Score=86.22 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh----------hcceEEecchhhH-
Q psy11253 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKVVSRTIAI- 166 (515)
Q Consensus 98 g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~----------~~~~~v~~~~~~~- 166 (515)
+-+++++.|...+.. .+.-..++++++|||||||||++++++++++. ..++.|+|..+.+
T Consensus 24 ~Re~E~~~i~~~L~~---------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 24 SQVEDFTRIFLPIYD---------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHH---------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred CHHHHHHHHHHHHHH---------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 344555555555432 22234678899999999999999999999994 5688999988766
Q ss_pred HHHHHHHhhc
Q psy11253 167 VLIFAVIFLH 176 (515)
Q Consensus 167 ~~~f~~~f~~ 176 (515)
..+|..++..
T Consensus 95 ~~~~~~I~~~ 104 (318)
T 3te6_A 95 DALYEKIWFA 104 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455444443
No 90
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.15 E-value=5.9e-07 Score=93.43 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=50.3
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ceec-ccccc-hHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCC
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIVD-KYIGE-SARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSE 488 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~s-~~~g~-~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~ 488 (515)
.+.++ | ||||||.++++++..++...+.+. ...+ +|+|+ +++.++.+|+.|+... ++||+|++....
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~~--- 123 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRARA--- 123 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhccc---
Confidence 44555 8 999999999999999997555554 4566 59995 8999999999998874 589999875332
Q ss_pred CCCchHHHHHHHHHHHHHccCCCCC
Q psy11253 489 GTSADREIQRTLMELLNQMDGFDSL 513 (515)
Q Consensus 489 ~~~~~~~~~~~~~~lL~~md~~~~~ 513 (515)
.+. ..++++++||++|||+.+.
T Consensus 124 ~~~---~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 124 EDV---AEERILDALLPPAKNQWGE 145 (444)
T ss_dssp -------------------------
T ss_pred hhh---HHHHHHHHHHHHhhccccc
Confidence 222 2358999999999998653
No 91
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=3.2e-06 Score=83.93 Aligned_cols=66 Identities=27% Similarity=0.371 Sum_probs=52.7
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEEe
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVV 160 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~ 160 (515)
++.++.+|+++.|.+..++.+.+.+.. + ..+. +|||||||||||++|+++++.+ +.+++.++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 345567899999999999999888743 1 2233 9999999999999999999996 45678888
Q ss_pred cchh
Q psy11253 161 SRTI 164 (515)
Q Consensus 161 ~~~~ 164 (515)
+++.
T Consensus 80 ~~~~ 83 (323)
T 1sxj_B 80 ASDD 83 (323)
T ss_dssp TTSC
T ss_pred Cccc
Confidence 7653
No 92
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.09 E-value=3.8e-06 Score=83.50 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=53.6
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhHHHHH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~~~~f 170 (515)
+++.|.+...+.+.+.+... ...+.++||+||||||||++|+++++.+ +.||+.++++.+....+-
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35788888888888877541 1345789999999999999999999965 689999999988664443
Q ss_pred HHHh
Q psy11253 171 AVIF 174 (515)
Q Consensus 171 ~~~f 174 (515)
.-+|
T Consensus 71 ~~lf 74 (304)
T 1ojl_A 71 SELF 74 (304)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 3333
No 93
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.07 E-value=4.1e-06 Score=93.77 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=52.6
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCC---CC-CceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITP---PK-GCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~~-giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
.+|.|.+..++.+.+++... ..++.. |. .+||+||||||||++|+++|+.+ +.+|++++++++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 57899999999999988652 122222 22 59999999999999999999998 68999999998764
No 94
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.07 E-value=3.6e-06 Score=94.15 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=50.7
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccC----CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGIT----PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~----~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+|.|.+.+++.+.+++.. .+.|+. |...+||+||||||||++|+++|+.++.+|++++++++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 3577888888888877743 223443 223599999999999999999999999999999998864
No 95
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.06 E-value=4.8e-06 Score=84.66 Aligned_cols=66 Identities=32% Similarity=0.383 Sum_probs=53.1
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh---------hhcceEEecc
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSR 162 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~---------~~~~~~v~~~ 162 (515)
..+++.|.+++++.+.+.+...+ .-..++.++||||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 34789999999999988764311 11356789999999999999999999998 7889999987
Q ss_pred hhhH
Q psy11253 163 TIAI 166 (515)
Q Consensus 163 ~~~~ 166 (515)
...+
T Consensus 88 ~~~~ 91 (387)
T 2v1u_A 88 HRET 91 (387)
T ss_dssp TSCS
T ss_pred cCCC
Confidence 6543
No 96
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.05 E-value=3.9e-06 Score=85.83 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=53.9
Q ss_pred ccc-c-chhHHHHHHHhhhhhhCCeEEeee--cee-cccccch-HHHHHHHHHHHH----hhCCeEEEechhhhhccCCC
Q psy11253 417 KHV-G-IVTTITILFHEIPHEIGDFAILIH--AIV-DKYIGES-ARLIREMFNYAR----DHQPCIIFMDEIDAIGGRRF 486 (515)
Q Consensus 417 ~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~-s~~~g~~-~~~i~~~f~~A~----~~~p~ilf~DE~D~~~~~r~ 486 (515)
.++ | ||||||.+++.++..++...+.+. .+. +.|.|+. +..+..+|..+. ...++||||||+|.+...|.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~ 154 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 154 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC
Confidence 444 8 999999999999999985444443 332 5678876 666777777542 34679999999999988764
Q ss_pred CCCCCchHHHHHHHHHHHHHccCC
Q psy11253 487 SEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
......+.....+.+.||..||+.
T Consensus 155 ~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 155 NRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp ---------CHHHHHHHHHHHHCC
T ss_pred CCceecccchHHHHHHHHHHhhcc
Confidence 332222222123677888888853
No 97
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=98.04 E-value=3.3e-06 Score=70.35 Aligned_cols=53 Identities=40% Similarity=0.765 Sum_probs=38.8
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCccccccccccc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 86 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 86 (515)
.++|++|++.|.+.+++++|+||++|+++..++.+++.||.++||+++.|.++
T Consensus 56 ~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 56 SSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp ETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred eCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 67799999999999999999999999999999999999999999999888664
No 98
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.04 E-value=3.7e-06 Score=85.74 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=52.2
Q ss_pred ccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----------hhcceEEecc
Q psy11253 94 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----------DANFLKVVSR 162 (515)
Q Consensus 94 ~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----------~~~~~~v~~~ 162 (515)
+++.|.+++++.+.+.+..... -..++.++||||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7899999999999888754211 1345789999999999999999999998 8899999987
Q ss_pred hhh
Q psy11253 163 TIA 165 (515)
Q Consensus 163 ~~~ 165 (515)
+..
T Consensus 91 ~~~ 93 (384)
T 2qby_B 91 EVG 93 (384)
T ss_dssp HHC
T ss_pred cCC
Confidence 654
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.03 E-value=7.2e-06 Score=75.88 Aligned_cols=39 Identities=36% Similarity=0.404 Sum_probs=33.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
+++++|+||||||||++|+++++.+ +.+++.++++++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 3789999999999999999999988 56788888776644
No 100
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=6.6e-06 Score=82.91 Aligned_cols=66 Identities=32% Similarity=0.462 Sum_probs=50.9
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh-----cceEE
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA-----NFLKV 159 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~-----~~~~v 159 (515)
.++..+.+|+++.|.+.+++.+...+.. | ..+ .+|||||||||||++++++|+.+.. .++.+
T Consensus 16 ~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 16 VEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 3455677899999999999998888753 2 123 3999999999999999999999743 35566
Q ss_pred ecch
Q psy11253 160 VSRT 163 (515)
Q Consensus 160 ~~~~ 163 (515)
+.++
T Consensus 83 ~~~~ 86 (340)
T 1sxj_C 83 NASD 86 (340)
T ss_dssp CTTS
T ss_pred cCcc
Confidence 6554
No 101
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.99 E-value=5.8e-06 Score=77.68 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=47.1
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+...+..|+++.|.+..++.+.+.+... ..++.++|+||||||||++++++++.++..
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3455667899999999999998887531 234568999999999999999999988754
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=1.1e-05 Score=84.24 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=49.2
Q ss_pred CCCCCCccccc-CCH--HHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceE
Q psy11253 87 DPGDITYSAIG-GLS--EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLK 158 (515)
Q Consensus 87 ~~~~~~~~di~-g~~--~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~ 158 (515)
-.|..+|+++. |.. .....+......| + . +++++||||||||||++|+++++.+ +.+++.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34567888876 533 3333444433321 1 1 5789999999999999999999999 788999
Q ss_pred EecchhhH
Q psy11253 159 VVSRTIAI 166 (515)
Q Consensus 159 v~~~~~~~ 166 (515)
+++.++..
T Consensus 166 v~~~~~~~ 173 (440)
T 2z4s_A 166 ITSEKFLN 173 (440)
T ss_dssp EEHHHHHH
T ss_pred eeHHHHHH
Confidence 99988754
No 103
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.95 E-value=7.1e-06 Score=80.90 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=63.4
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCCeEEee--eceec-ccccch-HHHHHHHHHHH-----HhhCCeEEEechhhhhcc
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGDFAILI--HAIVD-KYIGES-ARLIREMFNYA-----RDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~--~~~~s-~~~g~~-~~~i~~~f~~A-----~~~~p~ilf~DE~D~~~~ 483 (515)
.+.++ | ||||||.+++.++..++...+.+ ..... .|+|.. +..++.+|..+ +...++||||||+|.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 34444 8 99999999999999998544433 34444 677754 56778877643 223468999999999987
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 484 RRFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 484 ~r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
.+... +.+.....+.+.||..||+.
T Consensus 131 ~~~~~--~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 131 KGEYS--GADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp CSSCC--SSHHHHHHHHHHHHHHHHCC
T ss_pred ccccc--ccchhHHHHHHHHHHHhcCC
Confidence 76422 22222234567888888763
No 104
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.89 E-value=9.4e-06 Score=92.00 Aligned_cols=66 Identities=27% Similarity=0.456 Sum_probs=53.3
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCC----CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITP----PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~----~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
+.+|.|.+..++.+.+.+... +.|+.. ...+||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 467899999999998888541 122222 2368999999999999999999999 8899999998875
Q ss_pred H
Q psy11253 166 I 166 (515)
Q Consensus 166 ~ 166 (515)
.
T Consensus 629 ~ 629 (854)
T 1qvr_A 629 E 629 (854)
T ss_dssp S
T ss_pred c
Confidence 4
No 105
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.87 E-value=1.2e-05 Score=81.68 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=46.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 87 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 87 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+..+.+|+++.|.+..++.+.+.+.. + ..+..+|||||||||||++|+++|+.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44556899999999999999988743 1 234568999999999999999999998753
No 106
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.87 E-value=1.3e-05 Score=81.19 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=52.5
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh------hhcceEEecchh
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSRTI 164 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~------~~~~~~v~~~~~ 164 (515)
...+++.|.++.++.+.+.+...+ . + ..++.+++|||||||||++++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~------~--~-~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY------R--E-EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG------G--T-CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH------c--C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 344789999999999888764311 1 1 346789999999999999999999998 788999998765
Q ss_pred h
Q psy11253 165 A 165 (515)
Q Consensus 165 ~ 165 (515)
.
T Consensus 88 ~ 88 (386)
T 2qby_A 88 D 88 (386)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=1e-05 Score=81.71 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=45.3
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHH-hhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVI-ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i-~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
..++..+.+|+++.|.+.+++.++..+ .. + ..+. ++|+||||||||++++++|+++
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 355677889999999999998887766 21 1 2334 9999999999999999999975
No 108
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.84 E-value=2.1e-05 Score=78.27 Aligned_cols=39 Identities=36% Similarity=0.477 Sum_probs=33.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh----hcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD----ANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~----~~~~~v~~~~~~~ 166 (515)
.++++||||||||||++|+++|+++. .+++.++.+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 57899999999999999999999876 6777788776543
No 109
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.79 E-value=2.3e-05 Score=79.78 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=51.2
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCC--CceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhH
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK--GCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAI 166 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~--giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~ 166 (515)
.+++.|.+.+++.+.+.+.... . + ..+. .++++||||||||++++++++.+ +.+++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~------~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWL------R--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHH------H--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHH------c--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 3789999999999988875411 1 1 2234 79999999999999999999999 67889999766543
No 110
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.76 E-value=2.4e-05 Score=70.57 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=52.7
Q ss_pred cc-chhHHHHHHHhhhhhh----------CCeEEee--ecee--cccccchHHHHHHHHHHHHhh-CCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEI----------GDFAILI--HAIV--DKYIGESARLIREMFNYARDH-QPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----------~~~~i~~--~~~~--s~~~g~~~~~i~~~f~~A~~~-~p~ilf~DE~D~~~ 482 (515)
.| ||+|||.++++++..+ +...+.. .... .++.|..++.++.+|..+... .|+||||||+|.+.
T Consensus 49 ~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGS
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhc
Confidence 38 9999999999999987 4333332 2332 457788888999999988775 78999999999998
Q ss_pred cCCC
Q psy11253 483 GRRF 486 (515)
Q Consensus 483 ~~r~ 486 (515)
..+.
T Consensus 129 ~~~~ 132 (187)
T 2p65_A 129 GAGA 132 (187)
T ss_dssp SSSS
T ss_pred cccc
Confidence 7764
No 111
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.72 E-value=1e-05 Score=74.93 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
++..+++|+|||||||||++|.++|+.+.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444467999999999999999999998753
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=3.6e-05 Score=69.49 Aligned_cols=67 Identities=24% Similarity=0.392 Sum_probs=50.2
Q ss_pred cc-chhHHHHHHHhhhhhh----------CCeEE--eeecee--cccccchHHHHHHHHHHHH-hhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEI----------GDFAI--LIHAIV--DKYIGESARLIREMFNYAR-DHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----------~~~~i--~~~~~~--s~~~g~~~~~i~~~f~~A~-~~~p~ilf~DE~D~~~ 482 (515)
.| ||+|||.+++++++.+ +...+ .+.... .++.|+.++.++.+|+.+. ...|+||||||+|.+.
T Consensus 49 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMV 128 (195)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGT
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHh
Confidence 38 9999999999999986 33222 223333 4677888899999998764 4568999999999998
Q ss_pred cCC
Q psy11253 483 GRR 485 (515)
Q Consensus 483 ~~r 485 (515)
..+
T Consensus 129 ~~~ 131 (195)
T 1jbk_A 129 GAG 131 (195)
T ss_dssp T--
T ss_pred ccC
Confidence 766
No 113
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.65 E-value=1.9e-05 Score=83.58 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=39.3
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh--cceEEec
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA--NFLKVVS 161 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~--~~~~v~~ 161 (515)
.|.|.+..++.+..++.. ..++|||||||||||++|+++|+.++. +|..+++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 477888888776665522 367999999999999999999998853 4444443
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.56 E-value=2.9e-05 Score=75.10 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=23.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.++++||||||||||++|++||+.+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45799999999999999999999754
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=4.1e-05 Score=69.05 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+-|+|.||||+|||++++++|+.++.+++.++.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 4588999999999999999999999999888776543
No 116
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.52 E-value=0.00011 Score=74.35 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=50.8
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCC--eE--Eeeec-------------------------------------------
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGD--FA--ILIHA------------------------------------------- 445 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~--~~--i~~~~------------------------------------------- 445 (515)
.+.++ | ||||||.++++++..++. .. +.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~ 150 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSR 150 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcc
Confidence 34444 8 999999999999999873 22 22112
Q ss_pred ------eecccccchHHHHHHHHHHHHhh---------CCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 446 ------IVDKYIGESARLIREMFNYARDH---------QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 446 ------~~s~~~g~~~~~i~~~f~~A~~~---------~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
.++.+.|+....++..|..+... +|+||||||+|.+.. ...+.|+..|+..
T Consensus 151 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~--------------~~~~~L~~~le~~ 216 (368)
T 3uk6_A 151 TQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI--------------ESFSFLNRALESD 216 (368)
T ss_dssp ---CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH--------------HHHHHHHHHTTCT
T ss_pred cccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh--------------HHHHHHHHHhhCc
Confidence 23344555567777777766542 278999999998841 3455666666543
No 117
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.50 E-value=1.5e-05 Score=85.51 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=50.6
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEE--eeecee---------cccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAI--LIHAIV---------DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRF 486 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i--~~~~~~---------s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~ 486 (515)
+| ||||||.+++.++..++.... .+.... .+|+|...+.+..+|..|....| |+||||||.+...+.
T Consensus 114 ~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~ 192 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR 192 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC----
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc
Confidence 38 999999999999999875333 333222 27899999999999999987775 999999999987651
Q ss_pred CCCCCchHHHHHHHHHHHHHccCCC
Q psy11253 487 SEGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
. ...+.||+.||...
T Consensus 193 ~----------~~~~~LL~~ld~~~ 207 (543)
T 3m6a_A 193 G----------DPSSAMLEVLDPEQ 207 (543)
T ss_dssp ---------------CCGGGTCTTT
T ss_pred c----------CHHHHHHHHHhhhh
Confidence 1 24567888887543
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=6.6e-05 Score=69.37 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=29.0
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
+.+.+.|+|.||||||||++++.+|..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999887643
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00019 Score=71.48 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=48.2
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhC----------CeEEeee--ceec----------cc------ccchHHHHHHHHHH
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIG----------DFAILIH--AIVD----------KY------IGESARLIREMFNY 464 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~----------~~~i~~~--~~~s----------~~------~g~~~~~i~~~f~~ 464 (515)
.+.++ | ||||||.+++.+..++. +..+.++ ...+ .. .|++.+.+++.|+.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~ 125 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITN 125 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 34444 8 99999999999999883 2222222 2211 12 35678899999998
Q ss_pred H--HhhCCeEEEechhhhhc
Q psy11253 465 A--RDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 465 A--~~~~p~ilf~DE~D~~~ 482 (515)
+ ....|+|+||||+|.|.
T Consensus 126 ~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 126 VPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp SCGGGSCEEEEEEECCSSSC
T ss_pred hhhccCCceEEEEecHHHhh
Confidence 5 45568999999999997
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.39 E-value=7.6e-05 Score=67.78 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
++.|+|.||||||||++++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46789999999999999999999999887643
No 121
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.38 E-value=0.00011 Score=79.87 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=46.4
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 86 ~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.+.++..|+++.|.+..++.+...+.. ...++|+||||||||++|+++|..+...
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 456678899999999999888877642 3589999999999999999999988643
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.37 E-value=9.9e-05 Score=65.11 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~~ 166 (515)
+.+.++|+||||+|||+++++++..+ +...+.+++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL 77 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence 44668899999999999999999988 56677777776543
No 123
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.35 E-value=8.6e-05 Score=75.74 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhccc--------chhhhhhc--ccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH---
Q psy11253 100 SEQIRELREVIELPLL--------NPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI--- 166 (515)
Q Consensus 100 ~~~~~~l~~~i~~~~~--------~~~~~~~~--g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~--- 166 (515)
.++++.+ +.+++|.. ....++.+ ++.+++.++++||||||||+++++++..++..++.+..++-..
T Consensus 132 ~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~ 210 (377)
T 1svm_A 132 ADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFE 210 (377)
T ss_dssp CCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHH
T ss_pred HHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHH
Confidence 3345555 66666552 22333433 6777778999999999999999999999887766644333211
Q ss_pred -HHHH---HHHhhcCCcccC
Q psy11253 167 -VLIF---AVIFLHMPNLCD 182 (515)
Q Consensus 167 -~~~f---~~~f~~~d~~~~ 182 (515)
..+| .++++|++.+..
T Consensus 211 lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 211 LGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HGGGTTCSCEEETTCCCSTT
T ss_pred HHHhcchhHHHHHHHHHHHH
Confidence 1222 134455777764
No 124
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.26 E-value=0.00012 Score=66.69 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=28.1
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
..++-|+|.||||+|||++++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568899999999999999999999877655
No 125
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.23 E-value=7e-05 Score=81.19 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
..++||+||||||||++|+++|+.++..++.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 3479999999999999999999998766544
No 126
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.00022 Score=70.68 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh------hhcceEEecc
Q psy11253 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSR 162 (515)
Q Consensus 98 g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~------~~~~~~v~~~ 162 (515)
|.+++.+.++..+.. + . ...+|||||||||||++|+++|+.+ ...++.++++
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 455666777776643 1 1 3468999999999999999999975 3467788765
No 127
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.20 E-value=0.00017 Score=64.88 Aligned_cols=30 Identities=47% Similarity=0.662 Sum_probs=26.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+.|+|.||||+|||++|+.+|+.++.+++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 358899999999999999999999987764
No 128
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00011 Score=66.89 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=33.1
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+.++.-+.|.||||+|||++++.++..++.+.+.+++.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 34445588999999999999999999887777788776653
No 129
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.20 E-value=0.00012 Score=66.71 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=26.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHH-hhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQ-LDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~-~~~~~~~ 158 (515)
++.|+|.||||||||++++.+|+. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 345899999999999999999998 6866653
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.00022 Score=64.49 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=28.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
.++.|++.||||+|||++++.+|+.++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 346699999999999999999999998776543
No 131
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.18 E-value=0.00046 Score=68.90 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=50.6
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
....|......+.|-++..+.+.+ +.. +.++++||+|+|||++++.+++..+.+++.+++...
T Consensus 4 f~~~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 4 FDTSPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp TCSSCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CCCCCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 444556667788999988888877 521 468999999999999999999998878888887754
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00025 Score=64.27 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=26.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
..|+|.||||+|||++|+.+|+.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 358899999999999999999999988654
No 133
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.11 E-value=0.0004 Score=71.11 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=47.7
Q ss_pred CcccccCCHHHHHHHHHHH-hhcccchhhhhhccc-CCCCCcee--ecCCCChhhHHHHHHHHHhh---------hcceE
Q psy11253 92 TYSAIGGLSEQIRELREVI-ELPLLNPELFQRVGI-TPPKGCLL--YGPPGTGKTLLARAVASQLD---------ANFLK 158 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i-~~~~~~~~~~~~~g~-~~~~giLl--~GPpGtGKT~~a~~ia~~~~---------~~~~~ 158 (515)
..+++.|-+++++.+.+.+ ..... +. ..++.+++ |||||||||++++++++.+. .+++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3478999999999998887 43110 10 13456899 99999999999999999874 46778
Q ss_pred Eecch
Q psy11253 159 VVSRT 163 (515)
Q Consensus 159 v~~~~ 163 (515)
+++..
T Consensus 92 ~~~~~ 96 (412)
T 1w5s_A 92 VNAFN 96 (412)
T ss_dssp EEGGG
T ss_pred EECCC
Confidence 88644
No 134
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.0002 Score=63.83 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=26.5
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
-|.|.||||+|||++++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3788999999999999999999997765443
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00037 Score=68.37 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=30.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+.-++|.||||+|||++|+.++..++..++.|+++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4558899999999999999999988666777877554
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.08 E-value=0.00028 Score=63.17 Aligned_cols=29 Identities=38% Similarity=0.738 Sum_probs=25.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
..|.|.||||||||++++.+|..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999999987554
No 137
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00026 Score=63.23 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=27.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
..|+|.|+||||||++++.+|+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 568999999999999999999999988765
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00034 Score=67.19 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
..|.-++|.||||+|||++|+.++..++.+++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344568899999999999999999999877777777665
No 139
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.06 E-value=0.00046 Score=69.21 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 99 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+++.++.+...+.. | ..+..+|||||||||||++|+++|+.+..+
T Consensus 7 ~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 35556666665532 1 345679999999999999999999998753
No 140
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.02 E-value=0.00082 Score=66.90 Aligned_cols=63 Identities=24% Similarity=0.172 Sum_probs=49.7
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
....|...-..+.|-+...+.+.+.+.. + +.++++||+|+|||++++.+++..+ ++.+++...
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~ 65 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCREL 65 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHH
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecc
Confidence 3344556667889999999999887642 1 5789999999999999999999875 677776654
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00038 Score=64.13 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=26.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.-|+|.||||+|||++|+.+++.++.+++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 348899999999999999999999977654
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.96 E-value=0.00037 Score=65.25 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=26.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+..|+|.||||+|||++|+.+|+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4568899999999999999999999876543
No 143
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.96 E-value=0.00022 Score=70.72 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=29.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
|+.+.+.++++||||||||++|.++|.+.+.+.+.++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 55555668999999999999999999876655443333
No 144
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.00044 Score=61.76 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=26.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+-|+|.||||+|||++|+.+|+.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458899999999999999999999987654
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00036 Score=67.12 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
+++.||||+|||++|+.+|+.++.+++.++
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 678999999999999999999987766544
No 146
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00034 Score=65.68 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
..++-|+|.||||+||++.|+.||+.++.+ .++..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 345568889999999999999999998755 556666554
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.89 E-value=0.00035 Score=63.02 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00047 Score=62.90 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.+.-|.|.||||+|||++++.+|+.++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 34568899999999999999999999876553
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.87 E-value=0.00045 Score=62.58 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=24.7
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
-|.|.||||+|||++++.+|+.++.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4889999999999999999999986544
No 150
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.00023 Score=56.27 Aligned_cols=41 Identities=32% Similarity=0.638 Sum_probs=38.3
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCC
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPR 74 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~ 74 (515)
+++|++|++.|.+.+++++|+||++|+++..++.+++.||.
T Consensus 37 ss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 37 SSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp ETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred eCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 68999999999999999999999999999999999988875
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00041 Score=63.09 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+.-|+|.||||+|||++|+.+++.++.++ ++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHH
Confidence 34588999999999999999999998765 4444443
No 152
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.00013 Score=77.74 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred ccccc-c-chhHHHHHHHhhhhhhCCeEEeee--ceecccccchHH-------HHHHHHHHH-----HhhCCeEEEechh
Q psy11253 415 AGKHV-G-IVTTITILFHEIPHEIGDFAILIH--AIVDKYIGESAR-------LIREMFNYA-----RDHQPCIIFMDEI 478 (515)
Q Consensus 415 ~~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~--~~~s~~~g~~~~-------~i~~~f~~A-----~~~~p~ilf~DE~ 478 (515)
...++ | ||||||.++++++.+++...+.+. ...+++..++.- .+..+|+.+ ....|+||||||+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 34444 8 999999999999999986555443 333333222211 133445544 2356899999999
Q ss_pred hhhccC
Q psy11253 479 DAIGGR 484 (515)
Q Consensus 479 D~~~~~ 484 (515)
|.+...
T Consensus 158 d~l~~~ 163 (516)
T 1sxj_A 158 DGMSGG 163 (516)
T ss_dssp GGCCTT
T ss_pred Cccchh
Confidence 999754
No 153
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.84 E-value=0.00056 Score=64.73 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=26.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+..|+|.||||+|||++|+.+|+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3458999999999999999999999976554
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.0005 Score=61.07 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.9
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
-|+|.||||+|||++|+.+ +.++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3778999999999999999 8888876653
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.83 E-value=0.0005 Score=62.40 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=28.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
++-|.|.||||+|||++|+.+++.++.+++ +.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~ 41 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLL 41 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHH
Confidence 345889999999999999999999986554 444443
No 156
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.83 E-value=0.00055 Score=62.06 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-|++.||||+|||++++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999998
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.83 E-value=0.00047 Score=64.91 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.+.-|+|.||||+|||++++.+|+.++.+++ +.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~ 42 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL--SSGDLL 42 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE--EHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE--echHHH
Confidence 3456899999999999999999999986654 444443
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00065 Score=62.56 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
++-|+|.||||+|||++|+.++..++.+++ +..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i--~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI--EGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE--EGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE--eCCcC
Confidence 456899999999999999999999986654 45554
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.82 E-value=0.0012 Score=68.88 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=46.0
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhh----CCeEEEechhhhhcc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDH----QPCIIFMDEIDAIGG 483 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~----~p~ilf~DE~D~~~~ 483 (515)
.| ||||||.+++.|+..++...+.++. .+.+.+.++.+|+.|+.. .++||||||||.+-.
T Consensus 56 ~GppGtGKTtlAr~ia~~~~~~f~~l~a-----~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYANADVERISA-----VTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCEEEEEET-----TTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeEEEEe-----ccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH
Confidence 38 9999999999999999865555442 334567788888887753 579999999999843
No 160
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.82 E-value=0.00055 Score=63.77 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=28.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|+|.||||+||++.|+.||+.++.+ .++..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~--~istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHHH
Confidence 6789999999999999999998765 556666654
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.80 E-value=0.00063 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=25.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
|.|.|+||+|||++|+.+++.++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999977653
No 162
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.80 E-value=0.0004 Score=62.37 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCceeecCCCChhhHHHHHHHH-Hhhhcc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVAS-QLDANF 156 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~-~~~~~~ 156 (515)
+-|++.||||+|||++|+.+++ .++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3578999999999999999998 455433
No 163
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.80 E-value=0.00053 Score=64.12 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
..|+|.||||+|||++|+.+|+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 458899999999999999999999876554
No 164
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.79 E-value=0.00057 Score=64.04 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=26.6
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.+.-|+|.||||+|||++++.+|+.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3456899999999999999999999986544
No 165
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.77 E-value=0.00048 Score=69.26 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=27.9
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
.++|.||||+|||++++++|+.++.+|+.++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~ 56 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTFL 56 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeeec
Confidence 4899999999999999999999999996643
No 166
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.76 E-value=0.00062 Score=62.23 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
++-|.|.||||+|||++|+.+|+.++.++ ++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--i~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH--LSTGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE--EcHHHHH
Confidence 45688999999999999999999998554 4444443
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.73 E-value=0.0007 Score=67.31 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=42.3
Q ss_pred c-chhHHHHHHHhhhhhh---CC--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 420 G-IVTTITILFHEIPHEI---GD--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l---~~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
| ||+|||.+++.++..+ +. ..+.+......+.+.........|..+.. .|+||||||+|.+..++
T Consensus 44 G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 44 GSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 8 9999999999999987 53 33333344444444333322333443333 37999999999997543
No 168
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.00073 Score=60.93 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
.-+.|.|++|+|||++++.++..+ |.+++.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 347789999999999999999998 888888875543
No 169
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.72 E-value=0.00069 Score=63.06 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
|+|.||||+|||++|+.+|+.++.+++ +.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~r 36 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHI--STGDMFR 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHHH
Confidence 788999999999999999999876554 4444443
No 170
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00076 Score=62.73 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=26.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|+|.||||+|||++|+.+++.++.+++ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 35 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHI--STGDMF 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEe--eHHHHH
Confidence 788999999999999999999986654 444443
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.70 E-value=0.00083 Score=81.02 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=64.2
Q ss_pred cccc-c-chhHHHHHHHhhhhhhC-----CeEEeeecee----ccccc------------chHHHHHHHHHHHHhhCCeE
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIG-----DFAILIHAIV----DKYIG------------ESARLIREMFNYARDHQPCI 472 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~----s~~~g------------~~~~~i~~~f~~A~~~~p~i 472 (515)
..++ | ||||||.+|.+++.+.. ...+.....+ .+..| .+|+.++.+++.++..+|++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 4444 8 99999999999987643 1222222211 12223 56789999999999999999
Q ss_pred EEechhhhhccCC---CCCCCCchHHHHHHHHHHHHHccCCC
Q psy11253 473 IFMDEIDAIGGRR---FSEGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 473 lf~DE~D~~~~~r---~~~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
|||||++++++.+ .....+....-.++++++|.+|+++.
T Consensus 1509 VVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~ 1550 (2050)
T 3cmu_A 1509 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 (2050)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999754 21111111112467889998887653
No 172
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.70 E-value=0.00075 Score=66.88 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=46.5
Q ss_pred cc-chhHHHHHHHhhhhhhC--CeEEee--eceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 419 VG-IVTTITILFHEIPHEIG--DFAILI--HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~--~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
.| ||+|||.++.+++...+ ...+.. ...++.+..+.++.++.+++..+... +|||||++++...+
T Consensus 129 ~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 129 TGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp ECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred EcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 38 99999999999997533 333333 34445555677888888888887764 99999999997655
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.00087 Score=68.57 Aligned_cols=139 Identities=34% Similarity=0.548 Sum_probs=121.0
Q ss_pred cccCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeece
Q psy11253 376 KAKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAI 446 (515)
Q Consensus 376 ~~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~ 446 (515)
..+.|.++|+||+ .+..+.....++-..++-+. +|..+++|.++ | ||||||.+|+++|.+++. +.+..+.+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3456788999996 56666667777777777765 89999999988 8 999999999999999995 45555689
Q ss_pred ecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 447 VDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 447 ~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+++|+|+++++|+.+|+.|+..+||||||||||+++++|..+..+.+.++++++++||++|||+.+..
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 99999999999999999999999999999999999999987777777888999999999999998754
No 174
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.67 E-value=0.00075 Score=64.42 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
+|..|+|.||||+|||++|+.+++.++.+++ +.+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHH
Confidence 4556899999999999999999999876544 444443
No 175
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.64 E-value=0.00076 Score=62.07 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+-|.|.||||+|||++++.+++.++.+++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 348899999999999999999999865544
No 176
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.64 E-value=0.00076 Score=70.92 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=40.5
Q ss_pred cc-chhHHHHHHHhhhhhh----------CCeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEec
Q psy11253 419 VG-IVTTITILFHEIPHEI----------GDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMD 476 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----------~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~D 476 (515)
.| ||||||.+++.++..+ +...+.+... ++|.|+.+..++.+|+.++...|+|||||
T Consensus 207 ~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 207 IGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp ESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 38 9999999999999987 3333333322 88999999999999999999999999999
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.64 E-value=0.0021 Score=64.08 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=42.2
Q ss_pred cccc-c-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
..++ | ||||||.+++.++..++...+.+....- .....+..++.. ...+++|||||||.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI----EKSGDLAAILTN--LSEGDILFIDEIHRLS 119 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC----CSHHHHHHHHHT--CCTTCEEEEETGGGCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc----cchhHHHHHHHh--ccCCCEEEEechhhcC
Confidence 3444 8 9999999999999998865554442111 234445555543 2457999999999994
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.63 E-value=0.00097 Score=61.43 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+.-+.|.||||+|||+++++++..+|. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 445889999999999999999999864 44555554
No 179
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0009 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=28.5
Q ss_pred CCceeecCCCChhhHHHHHHHHH---hhhcceEEecch
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ---LDANFLKVVSRT 163 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~---~~~~~~~v~~~~ 163 (515)
.-|+|.|+||+|||++|+.++.. .|.+++.++.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 45889999999999999999998 667776556544
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.61 E-value=0.001 Score=59.65 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=26.5
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
-+.|.||||+|||++++.++..+|.+ .+++.++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCccc
Confidence 47899999999999999999988754 4455544
No 181
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.57 E-value=0.00091 Score=60.61 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh---cceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~~~ 165 (515)
-|++.||||+|||++++.+++.++. ++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 3789999999999999999999872 24445544443
No 182
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.00098 Score=61.58 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
++-|.|.|+||+|||++++.+++.++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 45588999999999999999999999887655
No 183
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.57 E-value=0.001 Score=61.91 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=26.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|+|.||||+|||++|+.+++.++.+++ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i--~~d~~~ 35 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQI--STGDML 35 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 789999999999999999999986654 444443
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0012 Score=60.84 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc---ceEEecchh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRTI 164 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~~~~~ 164 (515)
++.-+.|.||||||||++++++|..++.+ .+.+++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34457789999999999999999998532 345665443
No 185
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.54 E-value=0.0015 Score=59.87 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=28.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh-hhcceEEec
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVS 161 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~-~~~~~~v~~ 161 (515)
++-|.|.||||+|||++++.+++.+ +.+++.+.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3458899999999999999999998 688777653
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.53 E-value=0.0015 Score=59.33 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=26.2
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~ 160 (515)
|.|.|+||+|||++++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6789999999999999999998 77777653
No 187
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0015 Score=67.19 Aligned_cols=138 Identities=33% Similarity=0.596 Sum_probs=119.8
Q ss_pred ccCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeecee
Q psy11253 377 AKTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIV 447 (515)
Q Consensus 377 ~~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~ 447 (515)
.+.+.++|+||+ .+.++.....++-..++-+. +|..++.|.++ | ||||||.+|+++|.+++. +.+..+.++
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 345778999996 56777777777666777665 99999999888 8 999999999999999995 455556899
Q ss_pred cccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 448 DKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 448 s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
++|+|+++++++.+|+.|+..+||||||||+|+++++|...+.+.+.++.+++++||++||++.+.+
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 9999999999999999999999999999999999999977777777788899999999999998754
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.51 E-value=0.00095 Score=58.20 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=39.4
Q ss_pred ccc-c-chhHHHHHHHhhhhhh---C-CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 417 KHV-G-IVTTITILFHEIPHEI---G-DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 417 ~~~-G-~gtgkt~~~~~i~~~l---~-~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
+++ | ||||||.+|++++... + -+.+.+....+. ......|+.| .+++|||||+|.+-
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~ 89 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLT 89 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCC
Confidence 344 8 9999999999999875 2 233555544333 2345566665 35799999999984
No 189
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.51 E-value=0.00097 Score=66.30 Aligned_cols=33 Identities=39% Similarity=0.528 Sum_probs=28.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+.+++.||||+|||++++.+|+.++.+++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 458899999999999999999999977776644
No 190
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.00051 Score=59.82 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=38.7
Q ss_pred cccc-c-chhHHHHHHHhhhhhhC-CeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIG-DFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~-~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
.+++ | ||||||.+|+.++.... +..+.+...... .+...|+.|+ +++|||||+|.+-
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~a~---~~~l~lDei~~l~ 88 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLID-------MPMELLQKAE---GGVLYVGDIAQYS 88 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHH-------CHHHHHHHTT---TSEEEEEECTTCC
T ss_pred cEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChH-------hhhhHHHhCC---CCeEEEeChHHCC
Confidence 3444 8 99999999999999876 122222222222 2566677654 5799999999984
No 191
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0013 Score=61.85 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=26.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
|+|.||||+|||++++.+++.++.++ ++.+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~ 34 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGI 34 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHH
Confidence 68899999999999999999998654 444444
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.47 E-value=0.0013 Score=60.78 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v 159 (515)
+.-|.|.||||+|||++++.+++.++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 45588999999999999999999998776655
No 193
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0012 Score=63.46 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.+.|.|.||||||||++++.+|..++.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4679999999999999999999999987765
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.44 E-value=0.0019 Score=59.83 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=31.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
|+.+..-++++||||+|||++++.+|...+.+.+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4665556889999999999999999985556677766554
No 195
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0016 Score=67.53 Aligned_cols=137 Identities=34% Similarity=0.623 Sum_probs=118.6
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceec
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVD 448 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s 448 (515)
+.|.++|+||+ .+..+.....++-..++-+. +|..+++|.++ | ||||||.+|+++|.+++. +.+..+.+++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45778999996 56666666666666667664 89999999988 8 999999999999999996 4455568999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+|+|+++++++.+|+.|+..+||||||||+|+++.+|...+.+....+.+++++||++||++.+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999999999999999987777777888899999999999998754
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.42 E-value=0.0015 Score=61.07 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=28.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.-|.|.||||||||++++.++..++.+++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 34789999999999999999999986554 444444
No 197
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.41 E-value=0.0014 Score=60.00 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=24.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
|.|.||||+|||++++.+|+.++.+++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 678999999999999999999997554
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0017 Score=67.25 Aligned_cols=137 Identities=53% Similarity=0.779 Sum_probs=117.6
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceec
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVD 448 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s 448 (515)
+.+.++|++|+ .+..+.....++-..++-+. +|..+++|.++ | ||||||.+|+++|.+++. +.+..+.+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45778899996 45556666666556666664 89999999988 8 999999999999999995 4455568999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+|+|+++++++.+|..|+..+||||||||+|+++++|.+.+.+.+.++.+++++||++|||+.+.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999987777777788899999999999998754
No 199
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0043 Score=62.51 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=53.6
Q ss_pred cc-chhHHHHHHHhhhhhh---------CCeEEeee--ceec----------------ccccchH-HHHHHHHHHHHhh-
Q psy11253 419 VG-IVTTITILFHEIPHEI---------GDFAILIH--AIVD----------------KYIGESA-RLIREMFNYARDH- 468 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l---------~~~~i~~~--~~~s----------------~~~g~~~-~~i~~~f~~A~~~- 468 (515)
.| ||+|||.+++.++..+ +...+.++ ...+ .+.|.+. ..+..+++.++..
T Consensus 50 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 129 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLR 129 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 38 9999999999999887 54333332 2111 1234333 3456666666544
Q ss_pred CCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCC
Q psy11253 469 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 510 (515)
Q Consensus 469 ~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~ 510 (515)
.|+||||||+|.+...+ . ....+..++..++..
T Consensus 130 ~~~vlilDEi~~l~~~~------~---~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRP------G---GQDLLYRITRINQEL 162 (387)
T ss_dssp SEEEEEEETTTHHHHST------T---HHHHHHHHHHGGGCC
T ss_pred CeEEEEEccHhhhcccC------C---CChHHHhHhhchhhc
Confidence 48999999999997543 0 125677888877654
No 200
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.36 E-value=0.002 Score=58.65 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.9
Q ss_pred ceeecCCCChhhHHHHHHHHHh---hhcceEE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL---DANFLKV 159 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~---~~~~~~v 159 (515)
|.|.||||||||++++.+++.+ |.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 6789999999999999999999 8777654
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0019 Score=66.78 Aligned_cols=137 Identities=34% Similarity=0.540 Sum_probs=117.2
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceec
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVD 448 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s 448 (515)
+.+.++|+||+ .+.++.....++-..++-+. +|..+++|.++ | ||||||.+|+++|.+++. +.+.++.+++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45778899996 56666666666666666664 89999999888 8 999999999999999995 4455558999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+|+|+++++|+.+|+.|+..+||||||||+|+++++|.....+.+....+++++||++|||+.+..
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999999999999999977766666778899999999999998754
No 202
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.30 E-value=0.002 Score=61.15 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=29.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+.-+.+.||||||||++++.+|+.++.++ ++...+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~~r 45 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAMYR 45 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcHHH
Confidence 34588899999999999999999998654 55555544
No 203
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.29 E-value=0.0017 Score=59.65 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=23.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
-|.+.||||||||++++.+|. +|.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 377899999999999999999 8765544
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0022 Score=66.46 Aligned_cols=137 Identities=35% Similarity=0.556 Sum_probs=115.9
Q ss_pred cCCCCCCccch----hhhhhhhhhhhhcccccccc-ccccccccccc-c-chhHHHHHHHhhhhhhCC--eEEeeeceec
Q psy11253 378 KTSSQSNDDIA----VAGYLNLAADFTHNFTDGLA-IGASYLAGKHV-G-IVTTITILFHEIPHEIGD--FAILIHAIVD 448 (515)
Q Consensus 378 ~~~~~~~~~i~----~~~~l~~~~~~lh~~~dg~a-lg~~~~~~~~~-G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s 448 (515)
+.+..+|++|+ .+..+......+-..++-+. +|..+++|.++ | ||||||.+|+++|.+++. +.+..+.+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45778899996 44555555555555566654 89999999888 8 999999999999999995 4555568999
Q ss_pred ccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCCCCC
Q psy11253 449 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 514 (515)
Q Consensus 449 ~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~~~~ 514 (515)
+|+|+++++++.+|+.|+..+||||||||+|+|+++|.....+.+.++.+++++||++|||+.+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999999999999999977777777788899999999999998754
No 205
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.26 E-value=0.0022 Score=61.00 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=26.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
+.-+.|.||||+|||++++.+++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456889999999999999999999986554
No 206
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.25 E-value=0.0017 Score=67.70 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=40.6
Q ss_pred cc-chhHHHHHHHhhhhhh-----CCeEE--eeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhccCC
Q psy11253 419 VG-IVTTITILFHEIPHEI-----GDFAI--LIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l-----~~~~i--~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~~r 485 (515)
.| ||+|||.++++++..+ +...+ .+......+.+.-.......|..+....|+||||||+|.+.+++
T Consensus 136 ~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~ 210 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT 210 (440)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh
Confidence 37 9999999999999987 43333 32233332322222111223433333368999999999997643
No 207
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.24 E-value=0.0023 Score=58.80 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=27.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-|.+.||||+|||++++.+|..++.+++. ..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d--~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec--cchHH
Confidence 47789999999999999999999976654 44443
No 208
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.24 E-value=0.0011 Score=82.58 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=39.7
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchH--HHHHHHHHHHHh-hCCeEEEechh
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESA--RLIREMFNYARD-HQPCIIFMDEI 478 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~--~~i~~~f~~A~~-~~p~ilf~DE~ 478 (515)
+| .|+||+.+++-.+.-.+.-..-+. +++..|.++ .-++.++..|-. ..|.+.+|+|.
T Consensus 1615 vGvgGsGkqSltrLaa~i~~~~~fqi~--~~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~ 1676 (2695)
T 4akg_A 1615 IGASRTGKTILTRFVAWLNGLKIVQPK--IHRHSNLSDFDMILKKAISDCSLKESRTCLIIDES 1676 (2695)
T ss_dssp ECTTTSCHHHHHHHHHHHTTCEEECCC--CCTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETT
T ss_pred ECCCCCcHHHHHHHHHHHhCCeeEEEE--eeCCCCHHHHHHHHHHHHHHcCCCCCceEEEEecc
Confidence 38 999999999988876664332222 344445553 778999999854 56777777654
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0028 Score=60.59 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=26.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.-|.+.||||+|||++|+.++..++.+++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~ 51 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEV 51 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcc
Confidence 44789999999999999999999998864
No 210
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0021 Score=59.31 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
+.|.||||||||++++.+|. +|.+++ +..++
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 67899999999999999997 776654 44443
No 211
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.003 Score=57.20 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc---ceEEecch
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRT 163 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~---~~~v~~~~ 163 (515)
.-|.|.|+||+|||++++.+|..++.. +..+++..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 447899999999999999999998743 44454433
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.12 E-value=0.0027 Score=58.94 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh----hcceEEecch
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD----ANFLKVVSRT 163 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~----~~~~~v~~~~ 163 (515)
++.-|.+.||||+|||++++.++..++ .+++.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 344588899999999999999999876 3466666433
No 213
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.10 E-value=0.0037 Score=57.49 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
.-|.+.||||+|||++++.+++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 347899999999999999999999874
No 214
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.09 E-value=0.0028 Score=58.18 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.0
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|.|.|++|||||++++.+++.+|.+++ +.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~ 47 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIG 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHH
Confidence 678999999999999999998886654 455543
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.07 E-value=0.003 Score=57.72 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=26.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
.-|.|.||||||||++++.+|+. |.+++ +..++
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~ 41 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDAL 41 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHH
Confidence 34789999999999999999998 76554 44444
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.04 E-value=0.0031 Score=59.40 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH--h-------hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ--L-------DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~--~-------~~~~~~v~~~~ 163 (515)
|+.+..-++|+||||+|||++++.+|.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5666666899999999999999999985 2 34566666655
No 217
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.98 E-value=0.011 Score=64.49 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=43.5
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHH-HHHHHHh--hhcceEEecchhhH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLA-RAVASQL--DANFLKVVSRTIAI 166 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a-~~ia~~~--~~~~~~v~~~~~~~ 166 (515)
++.|-+-...+.|++.+..++.. ..-.|+.||||||||+++ ..|+..+ +.+++.+..+....
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~Av 246 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAV 246 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred cccccCCCCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHH
Confidence 34555556788888888877632 112588999999999864 4443332 55677777777766
Q ss_pred HHHH
Q psy11253 167 VLIF 170 (515)
Q Consensus 167 ~~~f 170 (515)
..+.
T Consensus 247 D~i~ 250 (646)
T 4b3f_X 247 DNLV 250 (646)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 218
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.96 E-value=0.008 Score=59.47 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=41.3
Q ss_pred c-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhh-----CCeEEEechhhhhc
Q psy11253 420 G-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDH-----QPCIIFMDEIDAIG 482 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~-----~p~ilf~DE~D~~~ 482 (515)
| ||||||.++++++++++...+.++..- .....++..+..+... .+.||||||+|.+.
T Consensus 55 G~~G~GKT~la~~la~~l~~~~~~i~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 55 PSPGTGKTTVAKALCHDVNADMMFVNGSD-----CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SSTTSSHHHHHHHHHHHTTEEEEEEETTT-----CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CcCCCCHHHHHHHHHHHhCCCEEEEcccc-----cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 7 999999999999999985444443211 1255666655554333 56899999999995
No 219
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.93 E-value=0.0057 Score=63.97 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=41.3
Q ss_pred cccCCCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh----cceEE
Q psy11253 84 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----NFLKV 159 (515)
Q Consensus 84 ~~~~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v 159 (515)
.+++..+.+++++ .++|++.+...+.. ... ..+.+++.||||||||+++++++..+.. .++.+
T Consensus 14 ~~~~~~p~~~~~L--n~~Q~~av~~~~~~-------i~~----~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 14 LVPRGSHMTFDDL--TEGQKNAFNIVMKA-------IKE----KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp -------CCSSCC--CHHHHHHHHHHHHH-------HHS----SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CccccCCCccccC--CHHHHHHHHHHHHH-------Hhc----CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 3456667788776 66777766655432 011 1236889999999999999999988743 34445
Q ss_pred ecchhh
Q psy11253 160 VSRTIA 165 (515)
Q Consensus 160 ~~~~~~ 165 (515)
..+...
T Consensus 81 a~T~~A 86 (459)
T 3upu_A 81 APTHAA 86 (459)
T ss_dssp ESSHHH
T ss_pred cCcHHH
Confidence 444443
No 220
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0041 Score=58.75 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=28.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
.-|.|.||||||||++++.+|..+|.+++ +..++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 34788999999999999999999986654 445544
No 221
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.90 E-value=0.0044 Score=57.59 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=26.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.-|.+.||||||||++++.+|..+|.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 458899999999999999999999976544
No 222
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.0049 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.602 Sum_probs=23.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
+.|.||+|+|||++.+.++..++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 67899999999999999999997443
No 223
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.87 E-value=0.014 Score=59.48 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=38.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchhhHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIAIVLIFAVIFL 175 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~~~~~f~~~f~ 175 (515)
...+|++|++|||||++|+++..... .||+.++++.+....+-.-+|-
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC
Confidence 45689999999999999999998765 7899999999876554444443
No 224
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.86 E-value=0.0033 Score=78.24 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=35.5
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
...|++++||||||||.+++++|+.+|.+++.+++++-.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l 682 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF 682 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence 347899999999999999999999999999999998654
No 225
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.83 E-value=0.0038 Score=58.16 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=29.6
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+..-++++||||+|||++++.++... +-+++.++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 45655668899999999999999999655 34555555443
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.004 Score=62.81 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~ 164 (515)
|+.+..-++++||||||||+++..++..+. -++++++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 455555588999999999999999998753 45666766553
No 227
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.79 E-value=0.0047 Score=59.11 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=27.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
-|.|.||+|||||++++.+|+.+|.+++ +...+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 4778999999999999999999997654 444444
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.76 E-value=0.0051 Score=56.68 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.4
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+++-+.|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3556688999999999999999999874
No 229
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.75 E-value=0.0041 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.++.-+.|.||||+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344557899999999999999999876
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.0049 Score=61.38 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=31.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---------hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---------~~~~~~v~~~~ 163 (515)
|+.+..-++++||||+|||++|..+|... +.+.++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666668999999999999999999875 44567777665
No 231
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.73 E-value=0.0045 Score=57.18 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=26.6
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
-|.+.||+|||||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 37789999999999999999999999883
No 232
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.72 E-value=0.0034 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHh-hhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL-DAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~-~~~ 155 (515)
.-+.+.||||+|||++++.++..+ +.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~ 49 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCS 49 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 347789999999999999999877 443
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.71 E-value=0.0045 Score=57.56 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.-|.|.||||+|||++++.++. +|.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 3478999999999999999998 7765543
No 234
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.69 E-value=0.022 Score=57.15 Aligned_cols=67 Identities=27% Similarity=0.310 Sum_probs=44.7
Q ss_pred cc-chhHHHHHHHhhhhhh------CCeEEeee--ceec------c----------cccch-HHHHHHHHHHHHhhC-Ce
Q psy11253 419 VG-IVTTITILFHEIPHEI------GDFAILIH--AIVD------K----------YIGES-ARLIREMFNYARDHQ-PC 471 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l------~~~~i~~~--~~~s------~----------~~g~~-~~~i~~~f~~A~~~~-p~ 471 (515)
.| +|+|||.+++.++..+ +...+.+. ...+ . ..|.+ ...++.+++..+... |+
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 130 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQV 130 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCE
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeE
Confidence 38 9999999999999877 54444333 1111 0 12333 344666777666554 89
Q ss_pred EEEechhhhhccCC
Q psy11253 472 IIFMDEIDAIGGRR 485 (515)
Q Consensus 472 ilf~DE~D~~~~~r 485 (515)
||||||+|.+...+
T Consensus 131 vlilDE~~~l~~~~ 144 (386)
T 2qby_A 131 VIVLDEIDAFVKKY 144 (386)
T ss_dssp EEEEETHHHHHHSS
T ss_pred EEEEcChhhhhccC
Confidence 99999999997543
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.67 E-value=0.0059 Score=73.77 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=53.5
Q ss_pred ccCCCCCCcccccCCHHHHHHHHHH-----------------Hhhcccchhhhhhc---ccCCCCCceeecCCCChhhHH
Q psy11253 85 HEDPGDITYSAIGGLSEQIRELREV-----------------IELPLLNPELFQRV---GITPPKGCLLYGPPGTGKTLL 144 (515)
Q Consensus 85 ~~~~~~~~~~di~g~~~~~~~l~~~-----------------i~~~~~~~~~~~~~---g~~~~~giLl~GPpGtGKT~~ 144 (515)
..+.|+++|++-..+....+.+..- ..+|...+++-.-+ |+.+..-++++|+||||||++
T Consensus 669 ~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtL 748 (2050)
T 3cmu_A 669 TGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 748 (2050)
T ss_dssp -----CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHH
T ss_pred hccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHH
Confidence 4467888998644455555544322 12334455566666 488888899999999999999
Q ss_pred HHHHHHHhhh---cceEEecchhhH
Q psy11253 145 ARAVASQLDA---NFLKVVSRTIAI 166 (515)
Q Consensus 145 a~~ia~~~~~---~~~~v~~~~~~~ 166 (515)
|..+|..+.. +++++++.....
T Consensus 749 alqlA~~~a~~g~~VlyiS~Ees~~ 773 (2050)
T 3cmu_A 749 TLQVIAAAQREGKTCAFIDAEHALD 773 (2050)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred HHHHHHHHHhcCCcEEEEECCCcHH
Confidence 9999988754 588887766443
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.67 E-value=0.0032 Score=62.86 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=28.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceEEecc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSR 162 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~ 162 (515)
+-|++.||+|+|||+++..||+.++.+++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3478999999999999999999998777655443
No 237
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.65 E-value=0.014 Score=57.01 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=35.8
Q ss_pred c-chhHHHHHHHhhhhhhC-----CeEEeeeceec-----c-------cccchHHHHHHHHHHHHhhCCeEEEechhhhh
Q psy11253 420 G-IVTTITILFHEIPHEIG-----DFAILIHAIVD-----K-------YIGESARLIREMFNYARDHQPCIIFMDEIDAI 481 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s-----~-------~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~ 481 (515)
| ||||||.+++.++..+. +..+.+..... . +.|..+. ..+....+...++||||||+|.+
T Consensus 54 G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 54 GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGS
T ss_pred CCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhc
Confidence 8 99999999999999873 23333332211 1 1122210 12223333344599999999988
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0066 Score=57.14 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=31.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
|+.+..-++++||||+|||+++..+|... +.+.+.++...-
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 56666668999999999999988887654 456777776653
No 239
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.59 E-value=0.0059 Score=56.85 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
|+.+..-+.|.||||+|||++++.++....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555555588999999999999999998543
No 240
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.58 E-value=0.0043 Score=60.72 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHh-hhcceEEecch
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSRT 163 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~-~~~~~~v~~~~ 163 (515)
+-|++.||||+|||++|+.++..+ +.+ .++.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccH
Confidence 347899999999999999999864 543 444433
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.55 E-value=0.0049 Score=60.73 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=28.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
++-+++.||+|+|||++|..+|+.++.+++.++.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 345788999999999999999999987766554433
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.52 E-value=0.0076 Score=60.84 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=31.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+.+-++++||||+|||++|..+|... +.+++.++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46666669999999999999999998765 44677777644
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.48 E-value=0.0076 Score=60.68 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
|+.+.+-++++||||+|||++|..++.... .+.+.++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 556656689999999999999999987653 4566666554
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.45 E-value=0.0061 Score=55.19 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=23.9
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
+.|.||||+|||++++.++...+- .+.+++.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 678999999999999999975432 24455544
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.42 E-value=0.01 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.+.||+|+|||+++++|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999987
No 246
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.41 E-value=0.019 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
-+.+.||+|+|||++++.++..+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 377899999999999999998773
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.35 E-value=0.0082 Score=60.28 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=30.4
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---------hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---------~~~~~~v~~~~ 163 (515)
|+.+..-++++||||+|||++|..+|... +.+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45544458899999999999999999873 34566676655
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.0066 Score=59.16 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=25.3
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecchh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTI 164 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~ 164 (515)
-|.+.||||+|||++|+.++ .+|.++ ++..++
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~ 108 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHL 108 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHH
Confidence 47899999999999999999 577554 444444
No 249
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.33 E-value=0.0077 Score=56.80 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=26.7
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhhH
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~~ 166 (515)
+-+.||||+|||+.|+.+++.++.+.+ +..++..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 447899999999999999999987655 4445443
No 250
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.32 E-value=0.0093 Score=60.20 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=43.2
Q ss_pred c-chhHHHHHHHhhhhhh-----------CCeEEeee--cee-----------c-------ccccch-HHHHHHHHHHHH
Q psy11253 420 G-IVTTITILFHEIPHEI-----------GDFAILIH--AIV-----------D-------KYIGES-ARLIREMFNYAR 466 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l-----------~~~~i~~~--~~~-----------s-------~~~g~~-~~~i~~~f~~A~ 466 (515)
| ||+|||.++++++..+ +...+.++ ... . .+.|.+ ...+..+++.++
T Consensus 52 G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 131 (384)
T 2qby_B 52 GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR 131 (384)
T ss_dssp ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc
Confidence 8 9999999999999886 65444443 211 1 122333 344667777666
Q ss_pred hhCCeEEEechhhhhccC
Q psy11253 467 DHQPCIIFMDEIDAIGGR 484 (515)
Q Consensus 467 ~~~p~ilf~DE~D~~~~~ 484 (515)
... +||||||+|.+...
T Consensus 132 ~~~-~vlilDEi~~l~~~ 148 (384)
T 2qby_B 132 NIR-AIIYLDEVDTLVKR 148 (384)
T ss_dssp SSC-EEEEEETTHHHHHS
T ss_pred cCC-CEEEEECHHHhccC
Confidence 554 49999999999754
No 251
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.0067 Score=57.27 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=29.2
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHH--H--hhhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVAS--Q--LDANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~--~--~~~~~~~v~~~~ 163 (515)
|+.+..-+.|.||+|+|||+++++++. . .+...+.+....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 566666688999999999999999983 2 234455555544
No 252
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.28 E-value=0.0075 Score=60.29 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=24.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
-|.+.||+|+|||++|+.+|..++..++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis 37 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIIS 37 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceec
Confidence 47889999999999999999999854443
No 253
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.26 E-value=0.0029 Score=66.90 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=32.8
Q ss_pred c-chhHHHHHHHhhhhhhCC----eEEee-----eceecccccchHHHHHHHHHHHHhh---CCeEEEechhhhh
Q psy11253 420 G-IVTTITILFHEIPHEIGD----FAILI-----HAIVDKYIGESARLIREMFNYARDH---QPCIIFMDEIDAI 481 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~----~~i~~-----~~~~s~~~g~~~~~i~~~f~~A~~~---~p~ilf~DE~D~~ 481 (515)
| ||||||.++++++..++. ..+.+ +.+++.+.+..... ...|..+... .|+|||||||+.+
T Consensus 48 GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~ 121 (500)
T 3nbx_X 48 GPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA 121 (500)
T ss_dssp CCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGC
T ss_pred cCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh
Confidence 8 999999999999998853 11111 12233333332221 2223322222 4789999999754
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.24 E-value=0.0087 Score=53.95 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.7
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+-+.|.||+|+|||++++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4477899999999999999998754
No 255
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.006 Score=63.01 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
+.-|++.||||+|||++|+.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 344788999999999999999998865443
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.22 E-value=0.011 Score=55.56 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=29.9
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH----hhhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ----LDANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~----~~~~~~~v~~~~ 163 (515)
|+.+..-++++|+||+|||++|-.+|.. .+.+++.++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 5666666899999999999998876643 245677776554
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.19 E-value=0.0087 Score=59.05 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~ 160 (515)
-+++.||+|+|||++|..+|+.++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 4678999999999999999999886654443
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.18 E-value=0.011 Score=59.88 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=31.3
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
|+.+.+-++++||||+|||++|..+|... +.+++.++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 46666668999999999999999988765 34667776654
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.15 E-value=0.012 Score=53.88 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.-+.|.||+|+|||++++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 447789999999999999999875
No 260
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.13 E-value=0.01 Score=64.09 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
.-|+|.|+||+|||++|+++++.+ +.+++.+++..+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 348899999999999999999999 899998875543
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.10 E-value=0.011 Score=58.33 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=28.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~~~~ 163 (515)
|+.+. -+++|||||+|||+++-.++... +-.+++++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 35444 47899999999999977776655 34566777654
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.09 E-value=0.0095 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|+|||++++.++..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477899999999999999999887
No 263
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.07 E-value=0.0099 Score=55.87 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=26.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
-|.+.|++|||||++++.+|+.++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 36789999999999999999999998854
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.05 E-value=0.0099 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+-+.|.||+|+|||++++.++..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4477899999999999999998875
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.03 E-value=0.011 Score=57.16 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=24.4
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
|+.+..-++++||||+|||++++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56655568899999999999999999754
No 266
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.03 E-value=0.016 Score=57.16 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcc--cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 100 SEQIRELREVIELPLLNPELFQRVG--ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 100 ~~~~~~l~~~i~~~~~~~~~~~~~g--~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+..++.+.+.+...+........+. +.++.-+.|.||+|+|||++++.+|..+.
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445555555544333221111222 33444588999999999999999998875
No 267
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.02 E-value=0.014 Score=53.91 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=25.0
Q ss_pred CceeecCCCChhhHHHHHHHHHh--------h-hcceEEecchh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL--------D-ANFLKVVSRTI 164 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~--------~-~~~~~v~~~~~ 164 (515)
-+|++||||+|||+.|.+.+... | .+++..+..++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 46889999999999988865443 3 55655555544
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.98 E-value=0.012 Score=59.31 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=31.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---------hcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---------~~~~~v~~~~~ 164 (515)
|+.+..-+.++||||+|||++++.++.... -..+++++.+.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 455445588999999999999999998862 24477776654
No 269
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.97 E-value=0.006 Score=56.12 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.+++++.||||+|||++|..++.... +++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 46799999999999999999998866 4443
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.84 E-value=0.018 Score=56.78 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+++-+++.||+|+|||++++.+|..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3445588999999999999999998774
No 271
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.82 E-value=0.015 Score=55.12 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=24.3
Q ss_pred hhcccCCCCC--ceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 121 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 121 ~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
....+..++| +-|.||+|+|||++++.++..+|...
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~ 53 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhc
Confidence 3333444455 66899999999999999999887544
No 272
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.81 E-value=0.018 Score=56.68 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=39.7
Q ss_pred cccc-c-chhHHHHHHHhhhhhhCCeEEeee-ceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIGDFAILIH-AIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~~~~i~~~-~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
..++ | +|||||.++++++..++...+... ... .....+...|..+ ...+++|||||+|.+.
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~-~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI-----EKPGDLAAILANS-LEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC-----CSHHHHHHHHTTT-CCTTCEEEETTTTSCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-----CChHHHHHHHHHh-ccCCCEEEEECCcccc
Confidence 3444 8 999999999999999885443332 111 1233444444331 1357999999999885
No 273
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.79 E-value=0.036 Score=56.14 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=38.9
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhc--ceEEecchhhHHHHHHHHhhc
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTIAIVLIFAVIFLH 176 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~~~~~~f~~~f~~ 176 (515)
...+|++|++||||+++|+++....+.. |+.+++..+....+..-+|-.
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc
Confidence 3459999999999999999999887644 999999988665554555543
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.015 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=22.4
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+++-+.|.||+|+|||++.+.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456688999999999999999998764
No 275
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.76 E-value=0.013 Score=58.00 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
|+.+..-++++||||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555899999999999999999975
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.74 E-value=0.019 Score=57.90 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.++.-+.|.||+|+|||++++.+|..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3444588999999999999999998875
No 277
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.73 E-value=0.015 Score=56.82 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=29.7
Q ss_pred cccCCCCCceeecCCCChhhHHHHHHHHHhh----hcceEEecc
Q psy11253 123 VGITPPKGCLLYGPPGTGKTLLARAVASQLD----ANFLKVVSR 162 (515)
Q Consensus 123 ~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~----~~~~~v~~~ 162 (515)
.++.+..-+++.||||+|||++++.+|..+. .+++.++..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3566556688999999999999999998764 245555543
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.72 E-value=0.017 Score=59.24 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=28.6
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---------hcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---------~~~~~v~~~~ 163 (515)
|+.+..-++++||||||||++++.++-..- ...++++..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 455555588999999999999997764432 2356666554
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.65 E-value=0.017 Score=55.62 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.4
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+.+..-+++.||+|+|||++.++++..+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 344444889999999999999999988754
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.64 E-value=0.017 Score=53.84 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+.+-+.|.||+|+|||++++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344457799999999999999999866
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.64 E-value=0.017 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+-+.|.||+|+|||++++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4467899999999999999998775
No 282
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.61 E-value=0.012 Score=60.00 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=25.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
+-|.+.||+|+|||++|..+|..++..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 346789999999999999999999876543
No 283
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.60 E-value=0.01 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
|.+.||||+|||++++.++..++..-+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 678999999999999999999875433
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.58 E-value=0.017 Score=56.90 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=24.5
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+++...+.|.||+|+|||+++++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34455558899999999999999999887
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.56 E-value=0.019 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=23.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
|-|.|.||+|+|||++++.+.++..-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5589999999999999999988764333
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.53 E-value=0.017 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+..-+.|.||.|+|||++.|+++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 333347899999999999999999876
No 287
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.44 E-value=0.019 Score=52.51 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=35.3
Q ss_pred c-chhHHHHHHHhhhhhhC-----CeEEeeeceecccccchHHHHHHHHHHH-H-----hhCCeEEEechhhhhc
Q psy11253 420 G-IVTTITILFHEIPHEIG-----DFAILIHAIVDKYIGESARLIREMFNYA-R-----DHQPCIIFMDEIDAIG 482 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s~~~g~~~~~i~~~f~~A-~-----~~~p~ilf~DE~D~~~ 482 (515)
| +|+|||.+++.+++.+. ...+.+... . ..+...+...+... + ...|+||||||+|.+.
T Consensus 45 G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 45 GPPGTGKTATAIALARDLFGENWRDNFIEMNAS--D--ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--C--TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHhccccccceEEeccc--c--ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 8 99999999999998752 222222211 1 11122333333222 2 2458999999999984
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.02 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
++-+.|.||+|+|||+++++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34477899999999999999998764
No 289
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.40 E-value=0.036 Score=59.58 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecchh
Q psy11253 95 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTI 164 (515)
Q Consensus 95 di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~ 164 (515)
.+...+.|++.+..++ ..+-+++.||||||||+++++++..+. .+++.+..+.-
T Consensus 187 ~~~L~~~Q~~Av~~~~----------------~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~ 243 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----------------GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGK 243 (574)
T ss_dssp TTTCCHHHHHHHHHHT----------------TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred cCCCCHHHHHHHHHHH----------------hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHH
Confidence 3444567777666543 124578899999999999999988654 45555544443
No 290
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.38 E-value=0.02 Score=60.07 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.-++|.||+|+|||++++.||..+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 33478999999999999999998775
No 291
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.35 E-value=0.019 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
-|.+.||||+|||++++.+++.++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3778999999999999999999874
No 292
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.30 E-value=0.02 Score=55.97 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=24.5
Q ss_pred CceeecCCCChhhHHHHHHHHHhh---hcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~~~ 165 (515)
-|.+.||+|+|||++|+.+++.++ ..+..++.+++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 367899999999999999999887 234455555543
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.26 E-value=0.012 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.9
Q ss_pred CCCCceeecCCCChhhHHHHHHH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVA 149 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia 149 (515)
++.-+.|.||+|+|||++++++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 33447899999999999999854
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.26 E-value=0.021 Score=52.61 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||+|+|||+++++|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3344477899999999999999998764
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.23 E-value=0.019 Score=60.95 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcceE---Eecchhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFLK---VVSRTIA 165 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~~---v~~~~~~ 165 (515)
.-|+|.|+||+|||++|+.+|..++..++. ++.+++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 347899999999999999999999877653 4555543
No 296
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.23 E-value=0.022 Score=61.12 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.8
Q ss_pred CceeecCCCChhhHHHHHHHHHhh----hcceEEecchhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD----ANFLKVVSRTIA 165 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~----~~~~~v~~~~~~ 165 (515)
-|+|.|+||+|||++|+++++.++ .+++.+++..+.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 378899999999999999999998 678888866543
No 297
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.15 E-value=0.041 Score=54.66 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=18.2
Q ss_pred ccc-c-chhHHHHHHHhhhhhhC
Q psy11253 417 KHV-G-IVTTITILFHEIPHEIG 437 (515)
Q Consensus 417 ~~~-G-~gtgkt~~~~~i~~~l~ 437 (515)
.++ | ||||||.+++.++..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 444 8 99999999999999876
No 298
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.14 E-value=0.014 Score=53.99 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=38.5
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEee------------------ecee--cccccchHHHHHHHHHHHHh----hCCeEE
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILI------------------HAIV--DKYIGESARLIREMFNYARD----HQPCII 473 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~------------------~~~~--s~~~g~~~~~i~~~f~~A~~----~~p~il 473 (515)
.| +|+|||.+++.++..+....... ...+ ..-.......++.+++.+.. ..|.||
T Consensus 51 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 130 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 130 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEE
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEE
Confidence 38 99999999999998764210000 0001 11111234556677666532 347999
Q ss_pred Eechhhhh
Q psy11253 474 FMDEIDAI 481 (515)
Q Consensus 474 f~DE~D~~ 481 (515)
||||+|.+
T Consensus 131 viDe~~~l 138 (250)
T 1njg_A 131 LIDEVHML 138 (250)
T ss_dssp EEETGGGS
T ss_pred EEECcccc
Confidence 99999997
No 299
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.09 E-value=0.012 Score=57.86 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=38.6
Q ss_pred cccc-c-chhHHHHHHHhhhhhhC-----CeEEeeeceec-------------ccccchHHHHHHHHHHHHhhCCeEEEe
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIG-----DFAILIHAIVD-------------KYIGESARLIREMFNYARDHQPCIIFM 475 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s-------------~~~g~~~~~i~~~f~~A~~~~p~ilf~ 475 (515)
.+++ | ||||||.+|+.++.... +..+.+..... .|.|... .....|+.|. +++|||
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~L 102 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD---GGTLFL 102 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT---TSEEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC---CCEEEE
Confidence 3444 8 99999999999998643 45555554321 1122211 1223455543 579999
Q ss_pred chhhhhc
Q psy11253 476 DEIDAIG 482 (515)
Q Consensus 476 DE~D~~~ 482 (515)
||||.+.
T Consensus 103 DEi~~l~ 109 (304)
T 1ojl_A 103 DEIGDIS 109 (304)
T ss_dssp ESCTTCC
T ss_pred eccccCC
Confidence 9999984
No 300
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.98 E-value=0.022 Score=57.82 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.3
Q ss_pred hhhhhcccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 118 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 118 ~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+.+..+.+.+..-+++.||+|+|||++.++++..+..
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3445544454455889999999999999999998764
No 301
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.92 E-value=0.057 Score=55.61 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=34.8
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCC-ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
..++++++-....++.+++.+ ..+++ +++.||+|+|||++.++++..+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 456677766555544444432 23344 788999999999999999988763
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.87 E-value=0.021 Score=51.23 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=33.2
Q ss_pred cc-chhHHHHHHHhhhhhh----CC--eEEeeeceecccccchHH-HHHHHHHHHHhhCCeEEEechhhhh
Q psy11253 419 VG-IVTTITILFHEIPHEI----GD--FAILIHAIVDKYIGESAR-LIREMFNYARDHQPCIIFMDEIDAI 481 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----~~--~~i~~~~~~s~~~g~~~~-~i~~~f~~A~~~~p~ilf~DE~D~~ 481 (515)
.| +|+|||.+++.++..+ +. ..+........+...-.. ....+.+ +-..|.+|+|||+++.
T Consensus 44 ~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 47 9999999999999876 32 223222222221100000 0001111 1235899999999865
No 303
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.84 E-value=0.024 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.7
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
-+++.||+|+|||++.++++..+..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 47889999999999999999887643
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.81 E-value=0.019 Score=56.22 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.-|.+.||+|+|||++++.++..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34778999999999999999999875
No 305
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.79 E-value=0.14 Score=51.34 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=38.7
Q ss_pred cc-chhHHHHHHHhhhhhh----CCeEEeee--ceecc----------------cccch-HHHHHHHHHHHHh-hCCeEE
Q psy11253 419 VG-IVTTITILFHEIPHEI----GDFAILIH--AIVDK----------------YIGES-ARLIREMFNYARD-HQPCII 473 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l----~~~~i~~~--~~~s~----------------~~g~~-~~~i~~~f~~A~~-~~p~il 473 (515)
.| +|+|||.+++.+...+ +...+.+. ...+. ..|.+ ...+..+.+.... ..|.||
T Consensus 50 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 129 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL 129 (389)
T ss_dssp ECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 38 9999999999999887 33333332 21110 01222 2333444444433 348999
Q ss_pred Eechhhhh
Q psy11253 474 FMDEIDAI 481 (515)
Q Consensus 474 f~DE~D~~ 481 (515)
||||+|.+
T Consensus 130 ilDE~~~l 137 (389)
T 1fnn_A 130 VLDDAFNL 137 (389)
T ss_dssp EEETGGGS
T ss_pred EEECcccc
Confidence 99999998
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.78 E-value=0.057 Score=55.86 Aligned_cols=38 Identities=29% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~~ 165 (515)
|+-|++.||||+|||+++..+|..+ |..+..+.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5568899999999999999999776 4556666665543
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.69 E-value=0.019 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred CCCCCceeecCCCChhhHHHHHHH-HHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVA-SQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia-~~~~ 153 (515)
.+..-+.|.||+|+|||++++.++ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 334447789999999999999999 7653
No 308
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.68 E-value=0.027 Score=58.98 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEec
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 161 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~ 161 (515)
+..|+|.|+||+|||++++.+|..++.+++....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~ 72 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 72 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE
Confidence 3458899999999999999999999877655443
No 309
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.65 E-value=0.081 Score=51.79 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcccchhhhhhccc-CCCCCceeecCCCChhhHHHHHHHHHhhh----cceEEecc
Q psy11253 101 EQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDA----NFLKVVSR 162 (515)
Q Consensus 101 ~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v~~~ 162 (515)
..++.+.+.+..-+..... ..+ .+++-+++.||+|+|||+++..+|..+.. .+..+..+
T Consensus 80 ~~~~~~~~~l~~~l~~~~~---~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG---SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCccc---ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4555555555443322211 111 23455888999999999999999987653 44444443
No 310
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.60 E-value=0.042 Score=49.77 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=21.8
Q ss_pred CceeecCCCChhhHHHHHHHHHh---hhcceEE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL---DANFLKV 159 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v 159 (515)
-++++||||+|||+++..++..+ +.+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36789999999999986666554 4444444
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.59 E-value=0.033 Score=50.77 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.4
Q ss_pred CceeecCCCChhhHHHHHHHHHhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
-+.+.||+|+|||++.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 477899999999999999998873
No 312
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.58 E-value=0.037 Score=54.93 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=23.5
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+++-+++.||+|+|||+++..+|..+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455588999999999999999998774
No 313
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.54 E-value=0.044 Score=50.87 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=34.6
Q ss_pred c-chhHHHHHHHhhhhhhC---C--eEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhcc
Q psy11253 420 G-IVTTITILFHEIPHEIG---D--FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGG 483 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~---~--~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~~ 483 (515)
| ||+|||.+++.++..+. . ..+.+......+ ..+++. -..|.||||||+|.+..
T Consensus 59 G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 59 GPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--------TALLEG--LEQFDLICIDDVDAVAG 118 (242)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--------GGGGTT--GGGSSEEEEETGGGGTT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------HHHHHh--ccCCCEEEEeccccccC
Confidence 8 99999999999998865 2 233333322221 111111 13479999999999854
No 314
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.51 E-value=0.03 Score=50.64 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.4
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
+|++|++|+|||++|..+|.. +.+.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 688999999999999999988 87877776544
No 315
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.46 E-value=0.039 Score=54.55 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=29.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~ 162 (515)
|+.+..-+++.|+||+|||+++..+|.... .+.+.++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 566666699999999999999999986653 456665544
No 316
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.44 E-value=0.064 Score=51.20 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=18.2
Q ss_pred cccc-c-chhHHHHHHHhhhhhhC
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIG 437 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~ 437 (515)
..++ | ||||||.+++.++..+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 3344 8 99999999999998865
No 317
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.43 E-value=0.029 Score=59.89 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhh----cceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDA----NFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v~~~~~ 164 (515)
+..+.|.||+|||||+++++||..++. .+..+++.++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 344789999999999999999999873 3444666554
No 318
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.42 E-value=0.056 Score=58.69 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=29.2
Q ss_pred CceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~~~~f 170 (515)
-.++.||||||||+++..++..+ +.+++.+..+......+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHH
Confidence 46889999999999877776654 345666666666554444
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.40 E-value=0.11 Score=51.98 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~ 162 (515)
|+.+..-+++.|+||+|||+++..+|... +.+++.++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56665568999999999999999988775 4566666554
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.37 E-value=0.04 Score=49.26 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=23.7
Q ss_pred ccCCCCC-ceeecCCCChhhHHHHHHHHHhh
Q psy11253 124 GITPPKG-CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 124 g~~~~~g-iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+....| .+++||.|+|||++.++|+..++
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444444 56899999999999999998765
No 321
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.29 E-value=0.05 Score=56.23 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=27.8
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh---hhcceEEecchh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRTI 164 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~~ 164 (515)
++-+++.||||+|||+++..+|..+ +..+..+.++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 4558889999999999999999777 445555555433
No 322
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.21 E-value=0.04 Score=69.46 Aligned_cols=38 Identities=34% Similarity=0.371 Sum_probs=34.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
..|..++||+|||||.+++.+|+.+|.+++.+++++-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~ 641 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF 641 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 45678999999999999999999999999999987754
No 323
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.15 E-value=0.078 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.-+.|.||+|+|||++++.+|..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999998775
No 324
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.13 E-value=0.042 Score=57.95 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=23.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.|.|.|++|||||++|+++|+.++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999985
No 325
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.06 E-value=0.066 Score=55.73 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~ 162 (515)
|+.+..-+++.||||+|||+++..+|... +.+++.++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56665568999999999999999888765 3467766654
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.93 E-value=0.048 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+-+.|.||+|+|||++.++++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34477899999999999999998764
No 327
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.81 E-value=0.13 Score=48.33 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=29.5
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceEEecch
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSRT 163 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~ 163 (515)
.+++.||+|+|||.++.+++..++.+.+.+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~ 143 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTL 143 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCH
Confidence 4899999999999999999999888877777663
No 328
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.78 E-value=0.053 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.+.||+|||||++++.+|..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4477899999999999999998775
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.72 E-value=0.075 Score=55.15 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=30.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~ 162 (515)
|+.+..-++++||||+|||++|..+|... +.+++.++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56655558899999999999998888654 3467777664
No 330
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.70 E-value=0.075 Score=49.78 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhh---hcceEEe
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD---ANFLKVV 160 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~ 160 (515)
++++||||+|||+++..++..+. ...+.+.
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 66789999999999988887773 4455554
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.67 E-value=0.041 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.|.||+|+|||++++.++..++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999876
No 332
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.63 E-value=0.057 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
|.|.||+|+|||+.++.+++.+..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998864
No 333
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.63 E-value=0.021 Score=54.67 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.-|.+.|++|+|||++++.+++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34478899999999999999999983
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.50 E-value=0.055 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
+.+.||+|+|||++++.|+..+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 678999999999999999998763
No 335
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.46 E-value=0.062 Score=50.38 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=25.6
Q ss_pred CceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
.|++.||||||||+++-.+|..+ |..++.++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 38889999999999998888776 44454444443
No 336
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.43 E-value=0.088 Score=58.81 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=28.5
Q ss_pred CceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAIVLIF 170 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~~~~f 170 (515)
-.++.||||||||+++..++..+ +..++.+..+......+.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~ 417 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHH
Confidence 36889999999999877776654 345666666665554444
No 337
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.42 E-value=0.12 Score=55.51 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=37.1
Q ss_pred cccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 93 ~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
...+.|-+..+++|.+.+... -...+-+.++||+|+|||++|+.+++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 356889999999998887431 012345889999999999999999764
No 338
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.40 E-value=0.045 Score=51.76 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=23.3
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.+.||+|+|||++.++++....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444478999999999999999997653
No 339
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.40 E-value=0.051 Score=51.19 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+-|.+.|++|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478899999999999999999984
No 340
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.39 E-value=0.049 Score=54.83 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=29.0
Q ss_pred hhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhhhc--ceEEecch
Q psy11253 120 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRT 163 (515)
Q Consensus 120 ~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~ 163 (515)
++...+.-.+| +.|.||+|||||++.|+||...... -+.+++.+
T Consensus 20 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT 67 (359)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 33333333444 7789999999999999999866432 33444443
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.37 E-value=0.061 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+.||+|||||+++++++..++
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 66899999999999999998876
No 342
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.37 E-value=0.1 Score=54.95 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecch
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSRT 163 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~~ 163 (515)
.++.|++.|+||+|||+++..+|..+ |..+..|+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34568899999999999999999777 45566666543
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.37 E-value=0.064 Score=46.78 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.5
Q ss_pred cc-chhHHHHHHHhhhhhh---CCeEEee--eceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEI---GDFAILI--HAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l---~~~~i~~--~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
.| +|+|||.+++.++..+ +...+.+ ...... +....|.+|+|||++++.
T Consensus 42 ~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp ESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 47 9999999999999876 4222222 222221 112358999999999864
No 344
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.36 E-value=0.081 Score=54.69 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecch
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSRT 163 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~~ 163 (515)
.++.|++.||||+|||+++..+|..+. ..++.+++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 356789999999999999999998774 4566666543
No 345
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.36 E-value=0.057 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
|.+.||+|+|||+.++.+++.+...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 6788999999999999999998643
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.11 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
....|++.|++|+|||++..++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999998643
No 347
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.29 E-value=0.17 Score=50.31 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=50.7
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEe----e--------------ece--ecc---cccchHHHHHHHHHHHHhh----CC
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAIL----I--------------HAI--VDK---YIGESARLIREMFNYARDH----QP 470 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~----~--------------~~~--~s~---~~g~~~~~i~~~f~~A~~~----~p 470 (515)
.| +|+|||.+++.++..+...... + .+. +.. -..-+...|+.+.+.+... .+
T Consensus 30 ~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~ 109 (334)
T 1a5t_A 30 QALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGA 109 (334)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSC
T ss_pred ECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCc
Confidence 38 9999999999999987531100 0 000 111 0122356688888877643 35
Q ss_pred eEEEechhhhhccCCCCCCCCchHHHHHHHHHHHHHccCCC
Q psy11253 471 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 511 (515)
Q Consensus 471 ~ilf~DE~D~~~~~r~~~~~~~~~~~~~~~~~lL~~md~~~ 511 (515)
.|++|||+|.+-. ...|.||..|+...
T Consensus 110 kvviIdead~l~~--------------~a~naLLk~lEep~ 136 (334)
T 1a5t_A 110 KVVWVTDAALLTD--------------AAANALLKTLEEPP 136 (334)
T ss_dssp EEEEESCGGGBCH--------------HHHHHHHHHHTSCC
T ss_pred EEEEECchhhcCH--------------HHHHHHHHHhcCCC
Confidence 8999999999831 34678888887643
No 348
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.24 E-value=0.087 Score=57.00 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.6
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+-+++.||||||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999887776653
No 349
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.23 E-value=0.049 Score=51.44 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=25.0
Q ss_pred hhhcccCCCC--CceeecCCCChhhHHHHHHHHHhh
Q psy11253 120 FQRVGITPPK--GCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 120 ~~~~g~~~~~--giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
++...+.-++ -+.+.||.|+|||++.++++....
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444433334 477999999999999999997654
No 350
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.18 E-value=0.043 Score=51.45 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=22.4
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.+.||+|+|||++.++++....
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3334477999999999999999997553
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.15 E-value=0.077 Score=47.65 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=22.3
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+-+.+.||+|+|||++++.+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 34578899999999999999998764
No 352
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.10 E-value=0.089 Score=49.00 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+-|.+.||+|+|||+.++.+++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 347789999999999999999999864
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.09 E-value=0.08 Score=55.83 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=30.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecch
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRT 163 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~ 163 (515)
|+.+..-+++.||||+|||+++-.+|... +.+++.++...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 45555558999999999999999888765 44677776654
No 354
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.09 E-value=0.054 Score=49.82 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=37.6
Q ss_pred c-chhHHHHHHHhhhhh--------hC---CeEEeeeceecccc----------cchHH--HHHHHHHHH--HhhCCeEE
Q psy11253 420 G-IVTTITILFHEIPHE--------IG---DFAILIHAIVDKYI----------GESAR--LIREMFNYA--RDHQPCII 473 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~--------l~---~~~i~~~~~~s~~~----------g~~~~--~i~~~f~~A--~~~~p~il 473 (515)
| ||+|||..+.+.... .| ++...+.++.-.+. ..+.. ..+..++.+ ....++||
T Consensus 12 G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 91 (199)
T 2r2a_A 12 GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIV 91 (199)
T ss_dssp CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGGTTCEE
T ss_pred eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccccCceEE
Confidence 7 999999998886433 22 23333333322221 22111 113344442 22347999
Q ss_pred EechhhhhccCC
Q psy11253 474 FMDEIDAIGGRR 485 (515)
Q Consensus 474 f~DE~D~~~~~r 485 (515)
+|||++.+++.|
T Consensus 92 iIDEAq~l~~~~ 103 (199)
T 2r2a_A 92 IVDEAQDVWPAR 103 (199)
T ss_dssp EETTGGGTSBCC
T ss_pred EEEChhhhccCc
Confidence 999999999877
No 355
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.04 E-value=0.059 Score=51.11 Aligned_cols=28 Identities=29% Similarity=0.657 Sum_probs=23.5
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+ .-+.+.||+|+|||++.++++....
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455 5677999999999999999997654
No 356
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.01 E-value=0.13 Score=46.60 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=30.5
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHH
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLAR 146 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~ 146 (515)
+|+|++-.+...+.+.+.- +..+.-++... +...+.+++.+|+|+|||..+-
T Consensus 2 ~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRG---LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence 5777776666666665521 11121111111 1224679999999999998743
No 357
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.97 E-value=0.063 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|||||++.|+||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3377899999999999999997654
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.95 E-value=0.081 Score=47.29 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=22.8
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+-+.+.||+|+|||+++..++..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 457789999999999999999887543
No 359
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.95 E-value=0.0086 Score=64.74 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=19.1
Q ss_pred cccc-c-chhHHHHHHHhhhhhhCC
Q psy11253 416 GKHV-G-IVTTITILFHEIPHEIGD 438 (515)
Q Consensus 416 ~~~~-G-~gtgkt~~~~~i~~~l~~ 438 (515)
..++ | ||||||.+|+.++..+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC
Confidence 3444 8 999999999999998763
No 360
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.93 E-value=0.063 Score=54.48 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=24.7
Q ss_pred hhcccCCCCC--ceeecCCCChhhHHHHHHHHHhh
Q psy11253 121 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 121 ~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+...+.-++| +.|.||+|||||++.|+||....
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3333333444 67899999999999999998664
No 361
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.92 E-value=0.063 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|||||++.|+||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3367899999999999999997654
No 362
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.91 E-value=0.058 Score=50.21 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.5
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.+.||.|+|||++.++++....
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445578999999999999999997654
No 363
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.91 E-value=0.075 Score=56.72 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhh---cceEEecchh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDA---NFLKVVSRTI 164 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~---~~~~v~~~~~ 164 (515)
.-|.|.|+||+|||++|+.+++.++. ++..+++..+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 34788999999999999999998874 5566665443
No 364
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.89 E-value=0.16 Score=49.75 Aligned_cols=34 Identities=32% Similarity=0.244 Sum_probs=25.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh---hcceEEec
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVS 161 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~ 161 (515)
++-+++.||+|+|||+++..+|..+. ..+..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 44577899999999999999998774 34444443
No 365
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.86 E-value=0.094 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=30.0
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHh---hhcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~~ 162 (515)
|+.+..-+++.|+||+|||++|-.+|... +.+++.++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56655569999999999999988888765 4566666654
No 366
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.85 E-value=0.057 Score=51.92 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=24.8
Q ss_pred hhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhh
Q psy11253 120 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 120 ~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+....+.-++| +.|.||+|+|||++.++++....
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34333333344 77899999999999999997654
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.85 E-value=0.06 Score=54.14 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||+|||||++.|+||....
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3334477899999999999999997654
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.84 E-value=0.056 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|||||++.|+||....
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3377899999999999999997654
No 369
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.80 E-value=0.13 Score=50.66 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=18.2
Q ss_pred c-chhHHHHHHHhhhhhhCCe
Q psy11253 420 G-IVTTITILFHEIPHEIGDF 439 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~~~ 439 (515)
| ||||||.+++.++..++..
T Consensus 53 G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 53 GVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp SCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCC
Confidence 8 9999999999999998853
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.76 E-value=0.067 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=21.5
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|||||++.|+||....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3377899999999999999997664
No 371
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.73 E-value=0.051 Score=68.47 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=36.8
Q ss_pred cc-chhHHHHHHHhhhhhhCC--eEEeeeceecccccch--HHHHHHHHHHHH-hhCCeEEEechhh
Q psy11253 419 VG-IVTTITILFHEIPHEIGD--FAILIHAIVDKYIGES--ARLIREMFNYAR-DHQPCIIFMDEID 479 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~--~~i~~~~~~s~~~g~~--~~~i~~~f~~A~-~~~p~ilf~DE~D 479 (515)
+| .|+||..+++-.+.-.+. |.+.++ +-.|.. ..-++.++..|- +..|.+.+|+|-.
T Consensus 1652 VGvgGSGkqSLtrLAa~i~~~~vfqi~i~----k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1652 IGVSGGGKSVLSRFVAWMNGLSIYTIKVN----NNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp EESTTSSHHHHHHHHHHHTTCEEECCC--------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred ecCCCCcHHHHHHHHHHHhCCeeEEEeee----CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 38 899999998877765553 444333 222333 466889999885 4667888887653
No 372
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.73 E-value=0.096 Score=55.56 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=30.3
Q ss_pred ccCCCCCceeecCCCChhhHHHHH--HHHHh--hhcceEEecchh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARA--VASQL--DANFLKVVSRTI 164 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~--ia~~~--~~~~~~v~~~~~ 164 (515)
++.+..-++|.||||||||++++. ++... +..-+.+++.+.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 345556689999999999999999 44443 345777887663
No 373
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.72 E-value=0.18 Score=46.51 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=34.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhc---ccCCCCCceeecCCCChhhHHH
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRV---GITPPKGCLLYGPPGTGKTLLA 145 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~---g~~~~~giLl~GPpGtGKT~~a 145 (515)
.+..+|++++..+...+.+.+.- +..+.-++.. .+...+.+++.+|+|+|||..+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 34567999988787777776542 2222222211 1223467999999999999873
No 374
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.71 E-value=0.062 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.+|+||.||+|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999999999873
No 375
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.65 E-value=0.073 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=22.1
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
+.+..-+.|.||.|+|||++.++++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 333344779999999999999999975
No 376
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.64 E-value=0.029 Score=51.14 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=33.4
Q ss_pred c-chhHHHHHHHhhhhhhC---CeE--Eeeeceecccccc-hHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 420 G-IVTTITILFHEIPHEIG---DFA--ILIHAIVDKYIGE-SARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~---~~~--i~~~~~~s~~~g~-~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
| +|+|||.++++++..+. ... +.+..+...+... ....+..+++..+. +.+|||||++...
T Consensus 61 G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 61 GSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 8 99999999999998873 222 2322222211100 00012233333332 4699999997753
No 377
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.62 E-value=0.054 Score=50.17 Aligned_cols=23 Identities=48% Similarity=0.546 Sum_probs=20.5
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.-+.+.||+|+|||++.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44778999999999999999976
No 378
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.56 E-value=0.064 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||.|+|||++.++++..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3333477999999999999999997654
No 379
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.53 E-value=0.34 Score=45.24 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=35.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHH
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARA 147 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ 147 (515)
+..+|++++..+...+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 4567999987777777765532 22222222211 22346799999999999987443
No 380
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.53 E-value=0.097 Score=48.52 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.2
Q ss_pred CceeecCCCChhhHHHHHHHHHhhhcceE
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDANFLK 158 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~~~~~ 158 (515)
.|-|+|.+|||||++++.++. +|.+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid 38 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD 38 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE
Confidence 467899999999999999998 8877654
No 381
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.52 E-value=0.061 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+..-+.|.||.|+|||++.++++....
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 333477999999999999999997654
No 382
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=91.49 E-value=0.11 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.3
Q ss_pred CceeecCCCChhhHHHHHH-HHHhh
Q psy11253 130 GCLLYGPPGTGKTLLARAV-ASQLD 153 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~i-a~~~~ 153 (515)
++||.|+||| ||++|+++ ++-+.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~p 264 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAP 264 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCS
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCC
Confidence 6999999999 99999999 66553
No 383
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.48 E-value=0.093 Score=49.60 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+-|.+.||||+|||+.++.++..++..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 347789999999999999999988643
No 384
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.47 E-value=0.14 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.1
Q ss_pred ceeecCCCChhhHHHHHHHHHhhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
|.+.|++|+|||++++.+++.++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 677899999999999999998876
No 385
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.45 E-value=0.067 Score=51.34 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=23.4
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.+.||+|+|||++.++|+..+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34444488999999999999999997653
No 386
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.44 E-value=0.073 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=22.0
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
+.+..-+.|.||+|+|||++.++++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334444779999999999999999975
No 387
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.43 E-value=0.062 Score=51.17 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.4
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.|.||+|+|||++.++++..+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444477999999999999999998654
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.43 E-value=0.067 Score=51.68 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=28.0
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhhc--ceEEecchh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTI 164 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~ 164 (515)
+.+..-+.|.||+|+|||++.++|+..+... -+.+++.++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL 83 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 3344447799999999999999999876422 344444443
No 389
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.42 E-value=0.071 Score=54.01 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+..-+.|.||+|||||++.|+||....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 333477899999999999999997654
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.33 E-value=0.15 Score=52.51 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecc
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSR 162 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~ 162 (515)
+++-+++.||+|+|||+++..+|..+. ..+..++++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 345577899999999999999998774 345555554
No 391
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.14 Score=57.19 Aligned_cols=42 Identities=31% Similarity=0.504 Sum_probs=29.4
Q ss_pred CceeecCCCChhhHHHHHHHHHh----hhcceEEecchhhHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIAIVLIFA 171 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~~~~~f~ 171 (515)
-.++.||||||||+++..+...+ +..++.+..+......+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHH
Confidence 36889999999999866655443 4567777777766655543
No 392
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.30 E-value=0.065 Score=50.37 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.3
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.+.||.|+|||++.++++..+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34444477999999999999999997654
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.25 E-value=0.061 Score=51.03 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.+.||+|+|||++.++++....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3333478999999999999999997654
No 394
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.25 E-value=0.066 Score=50.69 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||.|+|||++.++++....
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3333477999999999999999997654
No 395
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.22 E-value=0.081 Score=53.30 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
...+.+.||+|||||+++++|+..+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4558899999999999999999987643
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.21 E-value=0.17 Score=50.16 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=38.1
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEEeeeceecccccchHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
+| ||+|||.+++.++..++......+. -+-...+.+..++.. ...++|+|+||++.+.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l~~~~~~~sg----~~~~~~~~l~~~~~~--~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASELQTNIHVTSG----PVLVKQGDMAAILTS--LERGDVLFIDEIHRLN 115 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHHTCCEEEEET----TTCCSHHHHHHHHHH--CCTTCEEEEETGGGCC
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEec----hHhcCHHHHHHHHHH--ccCCCEEEEcchhhcC
Confidence 48 9999999999999998754332221 111223345554432 2246899999999985
No 397
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.20 E-value=0.12 Score=51.24 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=16.8
Q ss_pred cc-chhHHHHHHHhhhhhhC
Q psy11253 419 VG-IVTTITILFHEIPHEIG 437 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~ 437 (515)
.| ||+|||.+++.++..+.
T Consensus 64 ~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp ECSTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 38 99999999999998864
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.17 E-value=0.085 Score=55.98 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=28.8
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhh---hcceEEecc
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSR 162 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~---~~~~~v~~~ 162 (515)
++.+..-+++.||||+|||++++.++.... -+.+.+...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 566656688999999999999999997653 234444443
No 399
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.14 E-value=0.11 Score=52.69 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
....+++.||||||||++++.||+..+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 4455999999999999999999987643
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.10 E-value=0.067 Score=51.80 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=29.7
Q ss_pred hhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhhhc--ceEEecchh
Q psy11253 120 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTI 164 (515)
Q Consensus 120 ~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~ 164 (515)
++...+.-++| +.|.||+|+|||++.++++...... -+.+++.++
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 33333333344 7799999999999999999766432 344455443
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.10 E-value=0.06 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhh
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.-+.|.||+|||||++.|+||....
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3377899999999999999997654
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.10 E-value=0.13 Score=53.24 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHh----hhcceEEecchhh
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSRTIA 165 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~----~~~~~~v~~~~~~ 165 (515)
+++.|++.|++|+|||+++-.+|..+ |..+..++++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 45678899999999999998888776 4567777766543
No 403
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.03 E-value=0.13 Score=51.39 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=38.1
Q ss_pred cc-chhHHHHHHHhhhhhhCCeEE----eee--------------cee--cccccchHHHHHHHHHHHHh----hCCeEE
Q psy11253 419 VG-IVTTITILFHEIPHEIGDFAI----LIH--------------AIV--DKYIGESARLIREMFNYARD----HQPCII 473 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~~~~i----~~~--------------~~~--s~~~g~~~~~i~~~f~~A~~----~~p~il 473 (515)
.| +|+|||.+++.++..+..... .+. ..+ ..-.......++.+++.+.. ..+.||
T Consensus 44 ~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vl 123 (373)
T 1jr3_A 44 SGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 (373)
T ss_dssp ESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEE
Confidence 38 999999999999988752100 000 000 00001123346677776653 246899
Q ss_pred Eechhhhh
Q psy11253 474 FMDEIDAI 481 (515)
Q Consensus 474 f~DE~D~~ 481 (515)
||||+|.+
T Consensus 124 iiDe~~~l 131 (373)
T 1jr3_A 124 LIDEVHML 131 (373)
T ss_dssp EEECGGGS
T ss_pred EEECcchh
Confidence 99999998
No 404
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.00 E-value=0.072 Score=50.80 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=23.3
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.|.||.|+|||++.++++..+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33444477999999999999999997664
No 405
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.08 Score=50.70 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||.|+|||++.++++....
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3333477999999999999999997654
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.91 E-value=0.073 Score=51.66 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||.|+|||++.++++..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3334477999999999999999997664
No 407
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.91 E-value=0.081 Score=50.91 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.|.||.|+|||++.++|+....
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33334477999999999999999997654
No 408
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.83 E-value=0.42 Score=43.77 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=41.9
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHHHHHHh------hhcceEEe
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVV 160 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ia~~~------~~~~~~v~ 160 (515)
..+|+|++..+...+.+.+.- +..+.-++.-. +...+.+++.+|+|+|||..+-..+-.. +...+.+.
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 356999988888777776632 22222222111 1124679999999999999766655444 22455555
Q ss_pred cc
Q psy11253 161 SR 162 (515)
Q Consensus 161 ~~ 162 (515)
..
T Consensus 90 Pt 91 (220)
T 1t6n_A 90 HT 91 (220)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 409
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.81 E-value=0.091 Score=53.53 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+..-+.|.||+|||||++.|+||....
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3334477899999999999999997654
No 410
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.77 E-value=0.42 Score=44.39 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHH
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLAR 146 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~ 146 (515)
..+|++++..+...+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 457999987777777776532 22222222211 2234779999999999999644
No 411
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.74 E-value=0.14 Score=53.09 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhcce
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDANFL 157 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~~~ 157 (515)
.-+.|.||+|||||++.+.|+........
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 34789999999999999999999865533
No 412
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.73 E-value=0.078 Score=51.08 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhc--ceEEecchh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTI 164 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~ 164 (515)
.+..-+.|.||+|+|||++.++++...... -+.+++.++
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 333447789999999999999999765422 344444443
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.72 E-value=0.074 Score=56.27 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.4
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
..+..+++.||+|+|||++.++++..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566799999999999999999998764
No 414
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.72 E-value=0.11 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred CceeecCCCChhhHHHHHHHHHhhh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
=|.|.||+|+|||+.++.+++.+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999998864
No 415
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.68 E-value=0.071 Score=53.77 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.+...+++.||+|+|||++.++++.....
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3556677999999999999999999987653
No 416
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.64 E-value=0.079 Score=50.61 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.3
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+..-+.|.||.|+|||++.++++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444477999999999999999997654
No 417
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.54 E-value=0.21 Score=58.15 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=38.5
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.-..+.|.++.+++|.+.+... -...+-+.++||+|+|||++|+.+++..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 4456889999999999887431 0123457899999999999999998764
No 418
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.54 E-value=0.18 Score=49.15 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=39.2
Q ss_pred cc-chhHHHHHHHhhhhhhC-----CeEEeeeceecccccchHHHHHHHHHHHH-------hhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIG-----DFAILIHAIVDKYIGESARLIREMFNYAR-------DHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s~~~g~~~~~i~~~f~~A~-------~~~p~ilf~DE~D~~~ 482 (515)
.| +|+|||.+++.+++.+. ...+..... . ..+...++.+++... ...+.||||||+|.+.
T Consensus 48 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 48 SGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--D--DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp ECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--S--CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred ECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--c--ccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 38 99999999999998862 122222210 0 112456666666554 2237999999999984
No 419
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.54 E-value=0.17 Score=53.92 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhcccchhhhhhcccCCCCCceeecCCCChhhHHHHHHHH
Q psy11253 97 GGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 97 ~g~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|-++.+++|.+.+... +-...+-|.++|++|.|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 39999999998887431 011235578999999999999999997
No 420
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.51 E-value=0.12 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.+.+.||+|+|||++.++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4788999999999999999875
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.47 E-value=0.13 Score=51.42 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.6
Q ss_pred CCCCCceeecCCCChhhHHHHHHHHHhhhcc
Q psy11253 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANF 156 (515)
Q Consensus 126 ~~~~giLl~GPpGtGKT~~a~~ia~~~~~~~ 156 (515)
....-+.|.||+|+|||++.+.|++......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 3344488999999999999999999987554
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.44 E-value=0.12 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred CceeecCCCChhhHHHHHHHHHh
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+.+.||+|+|||++.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 423
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.41 E-value=0.14 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.4
Q ss_pred CCCceeecCCCChhhHHHHHHHHHh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
...+++.||||+|||++..++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998654
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.34 E-value=0.22 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
++-+.+.||+|+|||++++.+|..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577889999999999999998764
No 425
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.23 E-value=0.46 Score=46.81 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc----cCCCCCceeecCCCChhhHHHHHHHHHh-----hhcceEEe
Q psy11253 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVG----ITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVV 160 (515)
Q Consensus 90 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g----~~~~~giLl~GPpGtGKT~~a~~ia~~~-----~~~~~~v~ 160 (515)
..+|++++..+...+.+++.-. ..+.-++... +...+.+++.+|+|+|||+.+-..+.+. +...+.+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGF---EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 3578888877777777766432 1111112111 1223679999999999999866555443 44555565
Q ss_pred cchhh
Q psy11253 161 SRTIA 165 (515)
Q Consensus 161 ~~~~~ 165 (515)
.....
T Consensus 82 P~~~L 86 (367)
T 1hv8_A 82 PTREL 86 (367)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 55433
No 426
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.23 E-value=0.34 Score=44.54 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=39.0
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHHHH-HHh-----hhcceEEec
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVA-SQL-----DANFLKVVS 161 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ia-~~~-----~~~~~~v~~ 161 (515)
.+|++++..+..++.+.+.- +..+.-++.-. +...+.+++.+|+|+|||..+-..+ ..+ +...+.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 80 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLR---FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAP 80 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcC
Confidence 46888877776666665421 11111111111 1123679999999999999744333 332 334555555
Q ss_pred chh
Q psy11253 162 RTI 164 (515)
Q Consensus 162 ~~~ 164 (515)
..-
T Consensus 81 t~~ 83 (219)
T 1q0u_A 81 TRE 83 (219)
T ss_dssp SHH
T ss_pred cHH
Confidence 433
No 427
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.22 E-value=0.18 Score=50.23 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.|.||||+|||++.++++..+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 77899999999999999997763
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.19 E-value=0.093 Score=46.96 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCceeecCCCChhhHHHHHHHHHhhhc
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQLDAN 155 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~~~~ 155 (515)
+.+.+.||+|+|||++++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 346789999999999999999988754
No 429
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.13 E-value=0.41 Score=46.93 Aligned_cols=77 Identities=9% Similarity=0.077 Sum_probs=51.3
Q ss_pred ccc-chhHHHHHHHhhhhhhC-------CeEEeeeceecccccchHHHHHHHHHHHHhh----CCeEEEechhhhhccCC
Q psy11253 418 HVG-IVTTITILFHEIPHEIG-------DFAILIHAIVDKYIGESARLIREMFNYARDH----QPCIIFMDEIDAIGGRR 485 (515)
Q Consensus 418 ~~G-~gtgkt~~~~~i~~~l~-------~~~i~~~~~~s~~~g~~~~~i~~~f~~A~~~----~p~ilf~DE~D~~~~~r 485 (515)
+.| ||+|||.+++.++.+++ .+...-.. + ..-+...|+.+.+.|... ...|+||||+|.+-.
T Consensus 23 f~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~--~--~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-- 96 (305)
T 2gno_A 23 INGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE--G--ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-- 96 (305)
T ss_dssp EECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS--S--SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--
T ss_pred EECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC--c--CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH--
Confidence 448 99999999999998742 22111111 0 023456788888888643 136999999999931
Q ss_pred CCCCCCchHHHHHHHHHHHHHccCCCC
Q psy11253 486 FSEGTSADREIQRTLMELLNQMDGFDS 512 (515)
Q Consensus 486 ~~~~~~~~~~~~~~~~~lL~~md~~~~ 512 (515)
...|.||..|+....
T Consensus 97 ------------~a~naLLk~LEep~~ 111 (305)
T 2gno_A 97 ------------QAANAFLKALEEPPE 111 (305)
T ss_dssp ------------HHHHHTHHHHHSCCT
T ss_pred ------------HHHHHHHHHHhCCCC
Confidence 346788888886543
No 430
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.08 E-value=0.31 Score=48.78 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=40.9
Q ss_pred c-chhHHHHHHHhhhhhhC-----CeEEeeeceecc----ccc------------chHHHHHHHHHHHHhhCCeEEEech
Q psy11253 420 G-IVTTITILFHEIPHEIG-----DFAILIHAIVDK----YIG------------ESARLIREMFNYARDHQPCIIFMDE 477 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s~----~~g------------~~~~~i~~~f~~A~~~~p~ilf~DE 477 (515)
| ||+|||.++..++..+. ...+.....+.. ..| ..++.+..+...++...|.+|+||+
T Consensus 68 G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDs 147 (349)
T 2zr9_A 68 GPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDS 147 (349)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 7 99999999999986542 222222221111 112 2244455555566677899999999
Q ss_pred hhhhcc
Q psy11253 478 IDAIGG 483 (515)
Q Consensus 478 ~D~~~~ 483 (515)
+.++..
T Consensus 148 l~~l~~ 153 (349)
T 2zr9_A 148 VAALVP 153 (349)
T ss_dssp GGGCCC
T ss_pred hHhhcc
Confidence 999985
No 431
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.92 E-value=0.14 Score=53.30 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=28.3
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHHHHhhh----cceEEec
Q psy11253 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDA----NFLKVVS 161 (515)
Q Consensus 124 g~~~~~giLl~GPpGtGKT~~a~~ia~~~~~----~~~~v~~ 161 (515)
.+.+..-+.+.||.|||||+++|.|+..... ..+.+++
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 3445556889999999999999999987632 2155665
No 432
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.84 E-value=0.13 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCCCceeecCCCChhhHHHHHHHHH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
..-.|++.|++|+|||++.+++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3446999999999999999998753
No 433
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.75 E-value=0.32 Score=45.96 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=34.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHH
Q psy11253 89 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLAR 146 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~ 146 (515)
+..+|++++..+...+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLG---WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 3467999987777777665532 22222222211 2234789999999999998643
No 434
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.73 E-value=0.11 Score=50.69 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=25.8
Q ss_pred hhhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhh
Q psy11253 119 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 119 ~~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
.+....+.-++| +.|.||.|+|||++.++++..+.
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 445444443444 77999999999999999997543
No 435
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.70 E-value=0.16 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.+++.|++|+|||++.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 436
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.53 E-value=0.075 Score=52.91 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.8
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+...+++.||+|+|||++.++++....
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34556789999999999999999998765
No 437
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.45 E-value=0.23 Score=45.02 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=30.1
Q ss_pred CcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHH
Q psy11253 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARA 147 (515)
Q Consensus 92 ~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ 147 (515)
+|++++..+..++.+.+. .+..+.-++... +...+.+++.+|+|+|||..+-.
T Consensus 4 ~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEM---GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SGGGSCCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHH
Confidence 567776666666655442 111122121111 12347899999999999986543
No 438
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.31 E-value=0.18 Score=43.59 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.6
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999853
No 439
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.30 E-value=0.12 Score=49.58 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=24.5
Q ss_pred hhhcccCCC-CCceeecCCCChhhHHHHHHHHHh
Q psy11253 120 FQRVGITPP-KGCLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 120 ~~~~g~~~~-~giLl~GPpGtGKT~~a~~ia~~~ 152 (515)
+....+.-+ .-+.+.||+|+|||++.++++...
T Consensus 21 l~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 21 LENINLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 343333333 347799999999999999999765
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.29 E-value=0.23 Score=49.72 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---hhcceEEec
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVS 161 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---~~~~~~v~~ 161 (515)
.-|.+.|+||+|||+++..++..+ +..+..++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 348889999999999999999876 444444443
No 441
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.26 E-value=0.16 Score=48.16 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=26.5
Q ss_pred ceeecCCCChhhHHHHHHHHHhhhcceEEecchhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIA 165 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~~~~~~v~~~~~~ 165 (515)
|.|.|+||+|||++++.++..+|.+. +..++..
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~--~~~~~~~ 36 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK--YQLAGPI 36 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE--CCTTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EecChHH
Confidence 56899999999999999999888774 4444443
No 442
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.16 E-value=0.32 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
...+.+.|+||+|||+++..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34588889999999999999998763
No 443
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.14 E-value=0.1 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.2
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+.||+|||||++.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45789999999999999998764
No 444
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.13 E-value=0.18 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|++|+|||++.+++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998854
No 445
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=89.12 E-value=0.35 Score=45.33 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=38.4
Q ss_pred cCCCCcEEEEeccccccccCCCCCEEEEccchHHHHhhcCCCccc
Q psy11253 34 TTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDP 78 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~ 78 (515)
.++|++|++.+...|+.++|+||++|.++ .+..+++.+|.+..-
T Consensus 116 ~s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~G 159 (251)
T 3m9b_A 116 FTSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVG 159 (251)
T ss_dssp ECSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCS
T ss_pred EeCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcc
Confidence 45789999999999999999999999995 689999999876443
No 446
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.01 E-value=0.18 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred ceeecCCCChhhHHHHHHHHHhh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
+.+.||+|+|||++.++|+....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999999998764
No 447
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.99 E-value=0.15 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.+++.|+||+|||++.+.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.99 E-value=0.12 Score=50.84 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=28.4
Q ss_pred cCCCCCceeecCCCChhhHHHHHHHHHhhhc--ceEEecchh
Q psy11253 125 ITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTI 164 (515)
Q Consensus 125 ~~~~~giLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~ 164 (515)
+.+..-+.+.||+|+|||++.++|+..+... -+.+++.++
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 4444558899999999999999999766432 344444443
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.92 E-value=0.19 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.+.+.|+||+|||++.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999975
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.91 E-value=0.2 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999988875
No 451
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.79 E-value=0.4 Score=43.45 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCceeecCCCChhhHHHHHHHHHh---------hhcceEEecch
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSRT 163 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~~---------~~~~~~v~~~~ 163 (515)
+.+++.+|+|+|||+++-.++... +...+.+....
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 92 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKV 92 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHH
Confidence 579999999999999988777654 34555555553
No 452
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.77 E-value=0.14 Score=49.81 Aligned_cols=62 Identities=23% Similarity=0.132 Sum_probs=34.6
Q ss_pred cc-chhHHHHHHHhhhhhhC-------CeEEeeeceecccccchHHHHHHHHHHH--HhhCCeEEEechhhhhc
Q psy11253 419 VG-IVTTITILFHEIPHEIG-------DFAILIHAIVDKYIGESARLIREMFNYA--RDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 419 ~G-~gtgkt~~~~~i~~~l~-------~~~i~~~~~~s~~~g~~~~~i~~~f~~A--~~~~p~ilf~DE~D~~~ 482 (515)
.| ||+|||.+++.++..+. +..+......+ ...-...+....... ....+.||||||+|.+.
T Consensus 44 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp ESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred ECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence 38 99999999999999862 22333222111 111112222221110 01347899999999984
No 453
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.73 E-value=0.22 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLD 153 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~ 153 (515)
...+.+.|+||+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999998764
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.71 E-value=0.18 Score=50.85 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=29.8
Q ss_pred hhhcccCCCCC--ceeecCCCChhhHHHHHHHHHhhhc--ceEEecchh
Q psy11253 120 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--FLKVVSRTI 164 (515)
Q Consensus 120 ~~~~g~~~~~g--iLl~GPpGtGKT~~a~~ia~~~~~~--~~~v~~~~~ 164 (515)
++...+.-++| +-+.||+|+|||++.|+|+...... -+.+++.++
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 34444444444 7789999999999999999765432 344444443
No 455
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.68 E-value=0.21 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred CCceeecCCCChhhHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~ 150 (515)
..|++.|++|+|||++.+++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999885
No 456
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.64 E-value=0.21 Score=43.12 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|++|+|||++.+++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988753
No 457
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.47 E-value=0.22 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.5
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998753
No 458
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.41 E-value=0.21 Score=43.55 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=18.9
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 588999999999999998874
No 459
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.36 E-value=0.22 Score=43.02 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.6
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999998754
No 460
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.30 E-value=0.23 Score=43.07 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.7
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.18 E-value=0.36 Score=44.36 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.3
Q ss_pred ceeecCCCChhhHHHHHHHHHhh--hcceEE
Q psy11253 131 CLLYGPPGTGKTLLARAVASQLD--ANFLKV 159 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~~--~~~~~v 159 (515)
|-+-|+.|+|||+.++.+++.+. .+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 56789999999999999999884 344444
No 462
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.13 E-value=0.23 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
-.|++.|++|+|||++.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988753
No 463
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.08 E-value=0.23 Score=42.99 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.4
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999998853
No 464
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.99 E-value=0.36 Score=45.57 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=23.7
Q ss_pred CceeecCCCChhhHHHHHHHHHh--hhcceEEe
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQL--DANFLKVV 160 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~~--~~~~~~v~ 160 (515)
-+++.|.+|+|||+++..+|..+ +.....++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 36779999999999999999776 44444443
No 465
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.98 E-value=0.8 Score=45.56 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCcccccCCHHHHHHHHHHHh-hcccc-hhhhhhcccCCCCCceeecCCCChhhHHHHHHHH-Hh-----hhcceEEecc
Q psy11253 91 ITYSAIGGLSEQIRELREVIE-LPLLN-PELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS-QL-----DANFLKVVSR 162 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~-~~~~~-~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~-~~-----~~~~~~v~~~ 162 (515)
.+|++++..+...+.+.+.-. .|..+ .+.+..+--..++.+++.+|+|+|||+.+-..+- .+ +...+.+...
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 478888877777777665321 11111 1111111112347899999999999997554433 32 3345555555
Q ss_pred hhhHHHHH
Q psy11253 163 TIAIVLIF 170 (515)
Q Consensus 163 ~~~~~~~f 170 (515)
.....+++
T Consensus 85 ~~L~~q~~ 92 (395)
T 3pey_A 85 RELARQTL 92 (395)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
No 466
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.90 E-value=0.82 Score=50.78 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccch--hhhhhcccCCCCCceeecCCCChhhHHHHHHHHHh------hhcceEE
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNP--ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKV 159 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~--~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia~~~------~~~~~~v 159 (515)
.+..+|++.+..+...+.+.+.-.+|.... .+... +...+.+++.||+|+|||++...+.... +..++.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec
Confidence 345578888888877777776666664322 22222 2334558999999999999777775543 2224555
Q ss_pred ecchhhHHHHH
Q psy11253 160 VSRTIAIVLIF 170 (515)
Q Consensus 160 ~~~~~~~~~~f 170 (515)
.........+.
T Consensus 147 ~P~r~La~q~~ 157 (773)
T 2xau_A 147 QPRRVAAMSVA 157 (773)
T ss_dssp ESCHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 55444444444
No 467
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.90 E-value=0.26 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.2
Q ss_pred CCCceeecCCCChhhHHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~ 150 (515)
...|++.|+||+|||++.+++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999875
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.90 E-value=0.27 Score=42.65 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred ceeecCCCChhhHHHHHHHHHh
Q psy11253 131 CLLYGPPGTGKTLLARAVASQL 152 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~~~ 152 (515)
.+++||.|+|||++..||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998655
No 469
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.88 E-value=0.27 Score=42.38 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.3
Q ss_pred ceeecCCCChhhHHHHHHHH
Q psy11253 131 CLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 131 iLl~GPpGtGKT~~a~~ia~ 150 (515)
|++.|+||+|||++.+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999875
No 470
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.87 E-value=0.25 Score=42.61 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999875
No 471
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.87 E-value=0.19 Score=52.27 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhhh
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQLDA 154 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~~~~ 154 (515)
.+.++|+||||+|||++++.++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 345899999999999999999887654
No 472
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.75 E-value=0.14 Score=46.50 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=22.1
Q ss_pred cccCCCCCceeecCCCChhhHHHHHHHHH
Q psy11253 123 VGITPPKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 123 ~g~~~~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
+.+.....+.+.||||+|||++.++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33344444889999999999999998743
No 473
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.72 E-value=0.25 Score=42.84 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=18.5
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 474
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.67 E-value=0.25 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred CCceeecCCCChhhHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~ 150 (515)
..|++.|+||+|||++..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999865
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.66 E-value=0.79 Score=46.13 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=41.0
Q ss_pred c-chhHHHHHHHhhhhhhC-----CeEEeeeceeccc----c------------cchHHHHHHHHHHHHhhCCeEEEech
Q psy11253 420 G-IVTTITILFHEIPHEIG-----DFAILIHAIVDKY----I------------GESARLIREMFNYARDHQPCIIFMDE 477 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~-----~~~i~~~~~~s~~----~------------g~~~~~i~~~f~~A~~~~p~ilf~DE 477 (515)
| ||+|||.++..++..+. +..+.....+..+ . ...++.+..+.+..+...+.+|+||.
T Consensus 81 G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDs 160 (366)
T 1xp8_A 81 GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDS 160 (366)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 7 99999999999987642 2222222222111 1 12244444555555567789999999
Q ss_pred hhhhccC
Q psy11253 478 IDAIGGR 484 (515)
Q Consensus 478 ~D~~~~~ 484 (515)
+.++..+
T Consensus 161 l~~l~~~ 167 (366)
T 1xp8_A 161 VAALTPR 167 (366)
T ss_dssp TTTCCCS
T ss_pred hHHhccc
Confidence 9999853
No 476
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.55 E-value=0.27 Score=43.56 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999886
No 477
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.55 E-value=0.27 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999885
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.53 E-value=0.25 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.+.+.|++|+|||++.++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999853
No 479
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.52 E-value=0.24 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999998753
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.47 E-value=0.26 Score=42.65 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999875
No 481
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.46 E-value=0.23 Score=42.88 Aligned_cols=21 Identities=48% Similarity=0.784 Sum_probs=18.4
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 482
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.36 E-value=0.26 Score=42.97 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|++|+|||++.+++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999874
No 483
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.27 E-value=0.91 Score=41.76 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCCCCccc-ccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHH
Q psy11253 87 DPGDITYSA-IGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARA 147 (515)
Q Consensus 87 ~~~~~~~~d-i~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ 147 (515)
..|..+|.| .+......+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-.
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVG---ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 456677888 455566666655532 22222222211 22346799999999999986543
No 484
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.21 E-value=0.27 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998864
No 485
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.20 E-value=0.36 Score=44.33 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhhhc-ceEEecchhhH
Q psy11253 127 PPKGCLLYGPPGTGKTLLARAVASQLDAN-FLKVVSRTIAI 166 (515)
Q Consensus 127 ~~~giLl~GPpGtGKT~~a~~ia~~~~~~-~~~v~~~~~~~ 166 (515)
|++-|++.|.||+||+++|+.+.+.++.. +..++.++..-
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 44557889999999999999999877643 44566666554
No 486
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.20 E-value=1.1 Score=44.51 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHHHHHHHHh------hhcceEEec
Q psy11253 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVS 161 (515)
Q Consensus 91 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a~~ia~~~------~~~~~~v~~ 161 (515)
.+|++++..+...+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-..+-.. +...+.+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 84 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 84 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHS---CCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECC
Confidence 36778877777777766532 22122222111 2234679999999999999765554433 335555655
Q ss_pred ch
Q psy11253 162 RT 163 (515)
Q Consensus 162 ~~ 163 (515)
..
T Consensus 85 ~~ 86 (391)
T 1xti_A 85 TR 86 (391)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.11 E-value=0.29 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|++|+|||+++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 488
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.08 E-value=0.29 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.6
Q ss_pred CCCceeecCCCChhhHHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~ 150 (515)
.-.|++.|+||+|||++.+.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999998853
No 489
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.04 E-value=0.3 Score=42.96 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred CCceeecCCCChhhHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~ 150 (515)
..|++.|++|+|||++.+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3589999999999999999885
No 490
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.97 E-value=0.3 Score=43.57 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++.+++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.96 E-value=0.35 Score=43.05 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCCceeecCCCChhhHHHHHHHHH
Q psy11253 128 PKGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 128 ~~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
...|++.|+||+|||++..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999998753
No 492
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.96 E-value=0.3 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.6
Q ss_pred CceeecCCCChhhHHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~~ 151 (515)
.|++.|+||+|||++..++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999853
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.96 E-value=0.079 Score=52.17 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=32.1
Q ss_pred c-chhHHHHHHHhhhhhhC----CeE--Eeeeceecccccc-hHHHHHHHHHHHHhhCCeEEEechhhhhc
Q psy11253 420 G-IVTTITILFHEIPHEIG----DFA--ILIHAIVDKYIGE-SARLIREMFNYARDHQPCIIFMDEIDAIG 482 (515)
Q Consensus 420 G-~gtgkt~~~~~i~~~l~----~~~--i~~~~~~s~~~g~-~~~~i~~~f~~A~~~~p~ilf~DE~D~~~ 482 (515)
| ||+|||.++++++.++. ... +.+..++..+.+. ....+...++..+ .+.+|||||++...
T Consensus 159 G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 159 GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7 99999999999998765 222 2222222221110 0111222233322 34699999997653
No 494
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.93 E-value=0.31 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
-.|++.|++|+|||++.+++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 495
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.91 E-value=0.27 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
-.|++.|+||+|||++.+.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998864
No 496
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.91 E-value=0.48 Score=43.91 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhhcccchhhhhhcc---cCCCCCceeecCCCChhhHHH
Q psy11253 88 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLA 145 (515)
Q Consensus 88 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~giLl~GPpGtGKT~~a 145 (515)
.+..+|++++..+..++.+.+.- +..+.-++... +...+.+++..|+|+|||..+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 34567999987777777766531 22222222111 223477999999999999874
No 497
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.83 E-value=0.27 Score=42.95 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999864
No 498
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.76 E-value=0.31 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred CceeecCCCChhhHHHHHHHH
Q psy11253 130 GCLLYGPPGTGKTLLARAVAS 150 (515)
Q Consensus 130 giLl~GPpGtGKT~~a~~ia~ 150 (515)
.|++.|+||+|||++.+++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999874
No 499
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.73 E-value=0.3 Score=43.12 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.0
Q ss_pred CCceeecCCCChhhHHHHHHHHH
Q psy11253 129 KGCLLYGPPGTGKTLLARAVASQ 151 (515)
Q Consensus 129 ~giLl~GPpGtGKT~~a~~ia~~ 151 (515)
-.|++.|++|+|||++.+++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 500
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=86.67 E-value=0.47 Score=52.10 Aligned_cols=81 Identities=21% Similarity=0.183 Sum_probs=46.3
Q ss_pred CCCCcccccCCHHHHHHHHHH-Hhhcccc-hhhhhhcccCCCCCceeecCCCChhhHHHHHHH-HHh---hhcceEEecc
Q psy11253 89 GDITYSAIGGLSEQIRELREV-IELPLLN-PELFQRVGITPPKGCLLYGPPGTGKTLLARAVA-SQL---DANFLKVVSR 162 (515)
Q Consensus 89 ~~~~~~di~g~~~~~~~l~~~-i~~~~~~-~~~~~~~g~~~~~giLl~GPpGtGKT~~a~~ia-~~~---~~~~~~v~~~ 162 (515)
.+.+|++++..+..++.+.+. +..+..+ .+.+.. .+...+.+++.+|+|+|||+.+-..+ ..+ +...+.+...
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 346788888777666665542 1111111 112221 23446789999999999999874333 222 4556666666
Q ss_pred hhhHHHHH
Q psy11253 163 TIAIVLIF 170 (515)
Q Consensus 163 ~~~~~~~f 170 (515)
......++
T Consensus 85 r~La~q~~ 92 (715)
T 2va8_A 85 RALTNEKY 92 (715)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 64443444
Done!