RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11253
(515 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 101 bits (254), Expect = 5e-25
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F I V+ ++G A +R+MF A+ PCIIF+DEIDA+G +R + E ++
Sbjct: 74 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ 133
Query: 499 TLMELLNQMDGFDSLGQ 515
TL ++L +MDGF+
Sbjct: 134 TLNQMLVEMDGFEGNEG 150
Score = 96.4 bits (240), Expect = 4e-23
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 83 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 142
M ED T++ + G E E+ E++E L P FQ++G PKG L+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 143 LLARAVASQLDANFLKV 159
LLA+A+A + F +
Sbjct: 60 LLAKAIAGEAKVPFFTI 76
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 99.2 bits (247), Expect = 3e-24
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
V+ ++G A +R++F A+ H PCI+F+DEIDA+G +R S + E ++
Sbjct: 71 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ 130
Query: 499 TLMELLNQMDGFDSLGQ 515
TL +LL +MDGF+
Sbjct: 131 TLNQLLVEMDGFEKDTA 147
Score = 91.4 bits (227), Expect = 2e-21
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 86 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLA 145
E P +T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LA
Sbjct: 2 EAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59
Query: 146 RAVASQLDANFLKV 159
RAVA + F+
Sbjct: 60 RAVAGEARVPFITA 73
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 92.8 bits (229), Expect = 7e-22
Identities = 35/69 (50%), Positives = 53/69 (76%)
Query: 91 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 150
+ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 151 QLDANFLKV 159
+ A F +
Sbjct: 61 ETGAFFFLI 69
Score = 39.2 bits (90), Expect = 7e-04
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
F I I+ K GES +R+ F A + P IIF+DE+DAI +R + +R
Sbjct: 67 FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVERR 123
Query: 499 TLMELLNQM 507
+ +LL M
Sbjct: 124 IVSQLLTLM 132
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 87.6 bits (216), Expect = 5e-20
Identities = 34/70 (48%), Positives = 52/70 (74%)
Query: 90 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 149
+T+ IGGL + REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A
Sbjct: 3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 62
Query: 150 SQLDANFLKV 159
++ ANF+ +
Sbjct: 63 NECQANFISI 72
Score = 69.8 bits (170), Expect = 5e-14
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 439 FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 498
+I ++ + GES +RE+F+ AR PC++F DE+D+I R R
Sbjct: 70 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 129
Query: 499 TLMELLNQMDGFDSLGQ 515
+ ++L +MDG +
Sbjct: 130 VINQILTEMDGMSTKKN 146
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 69.7 bits (170), Expect = 1e-13
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 423 TTITILFHEIPHEIGD----FAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEI 478
+ T L H + +G + + Y + + ++ Q +I +D +
Sbjct: 134 SGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML--QHRVIVIDSL 191
Query: 479 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 515
+ G TS R +LL+ + +
Sbjct: 192 KNVIGAAGGNTTSGGIS--RGAFDLLSDIGAMAASRG 226
Score = 65.8 bits (160), Expect = 2e-12
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 24 HAEVEGRLRETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNM 83
H + G + T+G V + ++SG + D I+ Y + V
Sbjct: 22 HTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVK------ 75
Query: 84 SHEDPGDITYSAIGGLSEQIRELRE--VIELPLLNPELFQRVGITPPKGCLL-YGPPGTG 140
+ + + G + + R EL +P + + G G ++ G +G
Sbjct: 76 AEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSG 135
Query: 141 KTLLARAVASQL--DANFLKV 159
KT L A+ L + V
Sbjct: 136 KTPLVHALGEALGGKDKYATV 156
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 60.5 bits (146), Expect = 1e-10
Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 13/156 (8%)
Query: 8 EVRHKTLQDYRKKLTEHAEVEGRLRETTNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLT 67
+ K + K +H ++ N + K +D LT
Sbjct: 39 KCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKR-------VDSLQLT 91
Query: 68 IMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELR----EVIELPLLNPELFQRV 123
+ L + L+ M + I + L ++ + +
Sbjct: 92 REQMLTNRFNDLLDRMDIMFGSTGSAD-IEEWMAGVAWLHCLLPKMDSVVYDFLKCMVY- 149
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
I + L GP +GKT LA A+ L V
Sbjct: 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 185
Score = 41.2 bits (96), Expect = 2e-04
Identities = 4/66 (6%), Positives = 13/66 (19%), Gaps = 6/66 (9%)
Query: 451 IGESARLIREMF------NYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 504
+G + +F P ++ +D + + +
Sbjct: 196 LGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQI 255
Query: 505 NQMDGF 510
Sbjct: 256 FPPGIV 261
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 54.9 bits (131), Expect = 5e-09
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 96 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAV 148
+ G+ + + V++ L + + TP LL GPP +GKT LA +
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKI 60
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 52.3 bits (124), Expect = 5e-08
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158
L++ + EL + + + P LL G PG+GKT L A+ + N +
Sbjct: 15 LNDNLEELIQ------------GKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 159 V 159
+
Sbjct: 63 I 63
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 51.0 bits (120), Expect = 1e-07
Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 7/154 (4%)
Query: 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157
+Q+++L ++ L NP L G PGTGKT+ R +
Sbjct: 20 HREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 158 KVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDV 217
+ + + L + D
Sbjct: 73 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 132
Query: 218 KHPITLQVWGEALLSTILISLAPFLILFVVPLDT 251
+ + + + +V +
Sbjct: 133 AFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 166
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 50.3 bits (119), Expect = 1e-07
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 151
T G ++LR +E E P + LL+GPPG GKT LA +A +
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 152 LDANF 156
L N
Sbjct: 59 LGVNL 63
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 51.0 bits (121), Expect = 1e-07
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 98 GLSEQIRELREVIELPLLNPELFQRV-GITPPKGCLLYGPPGTGKTLLARAVASQLDANF 156
G ++ R + + +L + + PK L+ GP G GKT +AR +A +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 157 LKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSH 195
+KV + V + +
Sbjct: 78 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN 116
Score = 40.2 bits (93), Expect = 4e-04
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 430 HEIPHEIGDFAILIHAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEG 489
I E F + + + Q I+F+DEID I + G
Sbjct: 76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG 135
Query: 490 TSADREIQRTLMELLNQMDGF 510
RE +LL ++G
Sbjct: 136 ADVSRE--GVQRDLLPLVEGS 154
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 50.1 bits (118), Expect = 2e-07
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 4/100 (4%)
Query: 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157
+ L + LL+ V + G G GKT LA+ ++
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Query: 158 KVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDH 197
K + L + + +
Sbjct: 76 KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAP 115
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 47.8 bits (112), Expect = 1e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 92 TYSAIGGLSEQIRELREVIELPLLNPE----LFQRVGITPPKGCLLYGPPGTGKTLLARA 147
+ G + +L+ + + + + G + +LYGPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 148 VASQL 152
VA +L
Sbjct: 72 VAQEL 76
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.1 bits (111), Expect = 3e-06
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
PK L+ GP G GKT +AR +A +A F+KV
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 42.3 bits (98), Expect = 6e-05
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 151
+ G ++L +E + E LL GPPG GKT LA +AS+
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGE--------VLDHVLLAGPPGLGKTTLAHIIASE 58
Query: 152 LDANF 156
L N
Sbjct: 59 LQTNI 63
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 40.1 bits (92), Expect = 3e-04
Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 3/106 (2%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSRTIAIVLIFAVIFLHMPNLCDSH 184
L+ PG G L A++ L K L+ A L
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK 83
Query: 185 GHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEAL 230
G + + + + + + +T L
Sbjct: 84 GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALL 129
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 39.2 bits (90), Expect = 4e-04
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 129 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSH 188
+ L GPPG GKT L + L ++ + V F
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV------------DGFYTEEVRQGGRRIGF 49
Query: 189 HSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEA 229
S G L + + ++ + L + +
Sbjct: 50 DVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQL 90
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 39.7 bits (91), Expect = 5e-04
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHS 190
L+ G TGK+ + + ++L+ ++ + R + + L
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL-ELQKEINKLVKR 90
Query: 191 HEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
K ++ + K ++
Sbjct: 91 LPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 126
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 39.9 bits (92), Expect = 5e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 130 GCLLYGPPGTGKTLLARAVASQLD 153
G L++G GTGK+ RA+A+ L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLP 53
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 38.9 bits (89), Expect = 6e-04
Identities = 7/66 (10%), Positives = 17/66 (25%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSH 191
+ G +GK++L +A+ + R + + H +
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70
Query: 192 EHSHDH 197
Sbjct: 71 IDYAVR 76
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 38.4 bits (88), Expect = 6e-04
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 2/96 (2%)
Query: 133 LYGPPGTGKTLLARAVASQLDANF--LKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHS 190
L G PG+GK+ + R +A L V I +
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVR 65
Query: 191 HEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
+ G L + + H +
Sbjct: 66 AALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEI 101
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 37.8 bits (86), Expect = 0.001
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 127 PPKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSH 184
+G L G +GK +ARA+ L+ + VS + + + D H
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62
Query: 185 GHSHHSHEHSHDH 197
+ + +
Sbjct: 63 TNIQRIAFVATEL 75
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.3 bits (85), Expect = 0.002
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHS 187
+ +L G GK+ + R + S L +L ++ + + D+ G
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 188 HHSHEHSHDHGKL 200
E G
Sbjct: 63 SIGPEFRALEGAW 75
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 37.1 bits (85), Expect = 0.004
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 127 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
LL GP G+GKTL+A+ +A LD
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 99
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLI--FAVIFLHMPNLCDSHGHSHHSHE 192
G +GK+ + + L N + + + I+ F + G + H
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 68
Query: 193 HSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGE 228
+ D+ + + V ++ E
Sbjct: 69 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEE 104
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 35.4 bits (81), Expect = 0.008
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLK 158
L+ G + ++ + ++ K
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPPK 45
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 35.1 bits (80), Expect = 0.010
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 1/121 (0%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAV-IFLHMPNLCDSHGHSHHS 190
L G G+GKT A +A + + A +
Sbjct: 14 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD 73
Query: 191 HEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEALLSTILISLAPFLILFVVPLD 250
E + K +A + D + + L+ + L P +L V+
Sbjct: 74 GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 133
Query: 251 T 251
T
Sbjct: 134 T 134
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 35.0 bits (79), Expect = 0.011
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIV---LIFAVIFLHMPNLCDSHGHSH 188
++ GP G GK+ + +A+QLD + +V + L +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 189 HSHEHSHDHGKLPSFKYSKQANEPYHQDVK 218
+ + + + E Q V+
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQ 95
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 34.5 bits (78), Expect = 0.012
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSH-GHSHHSH 191
+ G G G T + R +A L F+ + + S
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQ 66
Query: 192 EHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
+ + + + + H + ++
Sbjct: 67 AVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLF 101
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.5 bits (78), Expect = 0.015
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
LL G PG+GK+ +A A+A+ +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHF 35
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 34.3 bits (77), Expect = 0.017
Identities = 13/102 (12%), Positives = 25/102 (24%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHE 192
L GP G GK+ + R +A QL+ F +
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVIN 66
Query: 193 HSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEALLSTI 234
+ + ++ + V+ E +
Sbjct: 67 ELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQ 108
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 34.5 bits (79), Expect = 0.018
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAV 148
S +++E+ E I+ ++ L+ G G GK ++AR +
Sbjct: 4 FESPKMKEILEKIK----------KISCAE-CPVLITGESGVGKEVVARLI 43
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.8 bits (78), Expect = 0.020
Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 19/145 (13%)
Query: 92 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 151
+ +A+ E L+ + + P P L LLYGP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 56
Query: 152 LDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDHGKLPSFKYSKQANE 211
+ + + I F+ N + + +
Sbjct: 57 IFGPG-------VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 109
Query: 212 PYHQDVKHPITLQVWGEALLSTILI 236
+ Q + L
Sbjct: 110 LKEVAQMEQVDFQDSKDGLAHRYKC 134
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 33.8 bits (76), Expect = 0.023
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 128 PKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHG 185
PKG L+ G PGTGKT +A +A++LD + + + + +
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAELDGFQH------LEVGKLVKENHFYTEYDTELDT 56
Query: 186 HSHHSHEHSH 195
H +
Sbjct: 57 HIIEEKDEDR 66
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.9 bits (76), Expect = 0.026
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSH 191
+L G G+GK+ +A VA QL A FL L M + +
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDG------DFLHPRRNIEKMASGEPLNDDDRKPW 63
Query: 192 EHSHDH 197
+ +
Sbjct: 64 LQALND 69
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 33.3 bits (75), Expect = 0.036
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHS 194
G G G+ + + ++ F + T P + +G +++ H
Sbjct: 10 GAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP-----------PKKDEENGKNYYFVSHD 58
Query: 195 HDHGKLPSFKYSKQANEPYHQDV 217
+ + +Y + +
Sbjct: 59 QMMQDISNNEYLEYGSHEDAMYG 81
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.0 bits (74), Expect = 0.041
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFL 157
LL G PG GKT L + +AS+ ++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYI 33
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.0 bits (74), Expect = 0.049
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRT 163
+ GP GTGK+ L + + ++ +F VS T
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 33.1 bits (74), Expect = 0.053
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 135 GPPGTGKTLLARAVASQLDANFLK--VVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHE 192
GP G GK L +A+A L + L + R +A+ + + + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF 69
Query: 193 HSHDHGKLPSFKYSKQANEPYHQDVKHPI 221
S + + + E Q+V +
Sbjct: 70 VSTNGNLEVILEGEDVSGEIRTQEVANAA 98
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.057
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 124 GITPPKGCLLYGPPGTGKTLLAR--AVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLC 181
GI ++G TGKT + AV QL + + + I + +
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 182 DSHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHP 220
+ +G S + + + + + Q +
Sbjct: 79 ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 117
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 32.6 bits (73), Expect = 0.057
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 21/110 (19%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRT-----------------IAIVLIFAVIFL 175
L GP G GK+ L + + + + F VS T ++ +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAG 64
Query: 176 HMPNLCDSHGH----SHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPI 221
+ G+ S + ++ Q + PI
Sbjct: 65 DFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPI 114
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 32.9 bits (75), Expect = 0.059
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 126 TPPKGCL-LYGPPGTGKTLLARAVASQL 152
TP K CL GP TGK+ + +
Sbjct: 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.5 bits (73), Expect = 0.061
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 127 PPKGCLLYGPPGTGKTLLARAVASQLDA 154
P+ + G PG GK+ +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 40
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.3 bits (72), Expect = 0.069
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHS 194
GTGKT L + + L A ++ H ++ S+ +
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRP---------GLIKHTHHDMDVDKPGKDSYELRKAG 59
Query: 195 HDHGKLPSFKYS 206
+ S +
Sbjct: 60 AAQTIVASQQRW 71
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.2 bits (72), Expect = 0.082
Identities = 13/65 (20%), Positives = 17/65 (26%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHE 192
G G+GK+ LARA+A LD FL +
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMAD 64
Query: 193 HSHDH 197
Sbjct: 65 FFSSC 69
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 32.9 bits (74), Expect = 0.089
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 98 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 157
++ +R++I+ L RVGIT G PG GK+ A+ S L A
Sbjct: 29 RRADHRAAVRDLIDAVLPQTGRAIRVGIT--------GVPGVGKSTTIDALGSLLTAAGH 80
Query: 158 KVVSRTIAIV-LIFAVIFLHMPNLCDSHGHSHHSHEHSHDH 197
KV + L ++
Sbjct: 81 KVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPS 121
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.7 bits (73), Expect = 0.097
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQL 152
+ L P G GK++LA +A+Q+
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLAAQI 53
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.0 bits (71), Expect = 0.10
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 129 KGC--LLYGPPGTGKTLLARAVASQLDANF 156
+GC L G G GKT ++ A+ L +
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.3 bits (72), Expect = 0.10
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
++ G P GKT +++ + L+ +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 32.4 bits (72), Expect = 0.11
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 115 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAV 148
LNP Q+ + G CL+ G+GKT + +
Sbjct: 2 LNPG--QQQAVEFVTGPCLVLAGAGSGKTRVITNKIA 36
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.9 bits (71), Expect = 0.13
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVV 160
++ G PG G T ++ L +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.5 bits (70), Expect = 0.16
Identities = 7/101 (6%), Positives = 26/101 (25%)
Query: 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHG 185
+ P + G PG+GK + L + + + +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63
Query: 186 HSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
+ + + + + ++ ++ + +
Sbjct: 64 IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEEN 104
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 31.3 bits (69), Expect = 0.17
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 123 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCD 182
+GI G +GKT LA ++ L + V + ++ H N
Sbjct: 25 LGID--------GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 183 SHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
+ H K S Q P++ + +
Sbjct: 77 FEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTV 120
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.1 bits (69), Expect = 0.19
Identities = 15/77 (19%), Positives = 25/77 (32%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSH 191
+L GPPG GK A + + A L + + + L + D G
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 192 EHSHDHGKLPSFKYSKQ 208
+ +L + K
Sbjct: 66 MVNMIKDELTNNPACKN 82
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 31.1 bits (69), Expect = 0.23
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 135 GPPGTGKTLLARAVASQLDANFL 157
GP +GK+ +A+ +A +L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.8 bits (68), Expect = 0.24
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVV 160
++ G PG GK+ + V LD +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 13/107 (12%)
Query: 108 EVIELPLLNPEL--FQRVGI-------TPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 158
+++E + L +Q G G L G GKTL AV S
Sbjct: 2 QLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-- 59
Query: 159 VVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDHGKLPSFKY 205
T ++V+ + + D K+ Y
Sbjct: 60 --ELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY 104
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 31.1 bits (69), Expect = 0.31
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 115 LNPELFQRVGITPPKG-CLLYGPPGTGKT-LLARAVASQLDAN-------FLKVVSRTIA 165
LN E Q+ + +G L+ G+GKT +L +A + + A
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query: 166 IVLIFAVIFLHMPNLCDSHGHSHHSH 191
+ V L D + HS
Sbjct: 70 REMRERVQSLLGGAAEDVWISTFHSM 95
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.39
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQL 152
G L G GTGKTLL
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVENA 50
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 30.3 bits (68), Expect = 0.43
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 116 NPELFQRV------GITPPKGCL-LYGPPGTGKTLLARAVASQL 152
+P+ V + + L+GP TGKT +A A+A +
Sbjct: 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.48
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 124 GITPPKGCLLYGPPGTGKTLLAR--AVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLC 181
GI +G TGKT L+ V +QL + I I + ++
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 92
Query: 182 DSHGHSHHSHEHSHDH 197
D H + + +
Sbjct: 93 DRFNVDHDAVLDNVLY 108
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.0 bits (66), Expect = 0.57
Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 7/103 (6%)
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDS 183
G + ++ G GK+ R A Q K V + + D
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-------VGLAMLEESVEETAEDL 83
Query: 184 HGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
G + D K + K L
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDS 126
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 30.1 bits (66), Expect = 0.61
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 1/108 (0%)
Query: 118 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHM 177
+ I GC++ G GKTL + L I V++ + L
Sbjct: 69 DCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ-SPDCKPEIDKVIVVSPSSLVR 127
Query: 178 PNLCDSHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQV 225
+ + G SK N Q ++ P + +
Sbjct: 128 NWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILI 175
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.6 bits (65), Expect = 0.68
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSH 191
++ G PG GKT L + + +L +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGF------WTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 192 EHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEALL 231
S S N Y +++ PI + + EA
Sbjct: 58 IFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKK 97
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.84
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 99 LSEQIRELREVIELPLLNPELFQRVGITPPKGC--LLYGPPGTGKTLLAR--AVASQLDA 154
E +++ + + + L + +G ++G G+GKT LA AV QL
Sbjct: 5 ADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
Query: 155 NFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDH 197
+ I I + + + G
Sbjct: 65 EEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYV 107
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.6 bits (65), Expect = 0.85
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDAN 155
G+ + L+ G GTGKTL +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 53
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.6 bits (66), Expect = 0.86
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 93 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 152
+ + ++RE + ++ EL +R L YG + +
Sbjct: 305 WEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR 364
Query: 153 DANFLK--VVSRTIAIV 167
A F++ V IA +
Sbjct: 365 GARFVRLEVTEEDIAEI 381
Score = 26.6 bits (58), Expect = 7.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 LLYGPPGTGKTLLARAVA 149
+L G PG GKT + +A
Sbjct: 47 VLIGEPGVGKTAIVEGLA 64
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 29.9 bits (66), Expect = 0.91
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 115 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAV 148
LN E Q+ + +G L+ G+GKT L R
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIA 46
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 0.99
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANF 156
L YGPPGTGKT A+ +L
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPD 61
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.3 bits (64), Expect = 1.0
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 124 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 160
G+ G G+GKT + L
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFY 66
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAI 166
L+ PP GKT+L + +A + N V + I
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 81
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.6 bits (63), Expect = 1.3
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 121 QRVGITPPKGCL--LYGPPGTGKTLLARAVASQLDANFLKVV 160
+R + +G L G +GK+ LA + QL +
Sbjct: 15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 56
>d1ehxa_ b.1.18.13 (A:) Cellulosomal scaffoldin protein CipC, module
x2.1 {Clostridium cellulolyticum [TaxId: 1521]}
Length = 94
Score = 27.4 bits (61), Expect = 1.4
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 366 DVDYKKTKRVKAKTSSQSNDDIAVAGYLNLAADFTHNFTDGLAIGASYLAGKHVGIVTTI 425
+ K K + N + ++ +T T+ + + ASYL T+
Sbjct: 10 SISAKAGSFADTKITLTPNGNTFNGISELQSSQYTKG-TNEVTLLASYLNTLPENTTKTL 68
Query: 426 TILFHE 431
T F
Sbjct: 69 TFDFGV 74
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.1 bits (61), Expect = 1.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 132 LLYGPPGTGKTLLARAVASQL 152
L G PG+GK+ AR ++
Sbjct: 6 LTIGCPGSGKSTWAREFIAKN 26
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 124 GITPPKGCLLYGPPGTGKTLLA 145
G+ L+G TGK+ L
Sbjct: 30 GVETGSITELFGEFRTGKSQLC 51
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.8 bits (64), Expect = 1.7
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVV 160
G G G + + +K V
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAV 36
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.0 bits (61), Expect = 2.0
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 128 PKGC--LLYGPPGTGKTLLARAVASQLDANFLKV 159
PKG +L GPPG GK A +A L
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.0 bits (61), Expect = 2.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
+L G P GK A+ + + +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQIST 31
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.9 bits (61), Expect = 2.1
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
++ G P +GK + ++ +
Sbjct: 7 MISGAPASGKGTQCELIKTKYQLAHISA 34
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 2.2
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 122 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 159
R+G+T G PG GK+ A L LKV
Sbjct: 56 RLGVT--------GTPGAGKSTFLEAFGMLLIREGLKV 85
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.9 bits (61), Expect = 2.5
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFL 157
+ G PG+GK ++ + + L
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHL 35
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 27.6 bits (60), Expect = 2.7
Identities = 13/117 (11%), Positives = 26/117 (22%), Gaps = 3/117 (2%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHS 187
P + G PG GK + + L + + G
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60
Query: 188 HHSHEHSH---DHGKLPSFKYSKQANEPYHQDVKHPITLQVWGEALLSTILISLAPF 241
+++ ++ LQ W + + +S F
Sbjct: 61 VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 117
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 27.6 bits (60), Expect = 2.8
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
+L G PG GK A + + +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.5 bits (60), Expect = 2.8
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 132 LLYGPPGTGK-TLLARAVASQLDANFLKVVSRT--------IAIVLIFAVIFLHMPNLCD 182
++ P G GK +L+ + +Q + VS T + F V +
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 65
Query: 183 SHGHSHHSHEHSHDHG 198
H+ + +G
Sbjct: 66 RDAFLEHAEVFGNYYG 81
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 3/95 (3%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVVSRTI---AIVLIFAVIFLHMPNLCDSHGHSHHSH 191
GP GK+ + R + ++ V + T + P
Sbjct: 9 GPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 68
Query: 192 EHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
E + HG L Q +
Sbjct: 69 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDL 103
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 27.4 bits (60), Expect = 3.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANF 156
L G G GKT +AR +A L+
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCET 62
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.1 bits (59), Expect = 4.1
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 135 GPPGTGKTLLARAVASQLDANFLKVV 160
G +GKT L + +V
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVG 33
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 27.2 bits (59), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFLKV 159
LL GPPG GK A +A +L +
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 27.1 bits (59), Expect = 4.1
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 103 IRELREVIELPLLNPEL----FQRVGITP---PKGCLLYGPPGTGKTLLARAVASQLDAN 155
+ + I P + E+ +Q + K + P G+GKT +A A ++L
Sbjct: 53 VDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTP 112
Query: 156 FLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHSHEHSHDH 197
L VV + + +
Sbjct: 113 TLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVS 154
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.1 bits (59), Expect = 4.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 131 CLLYGPPGTGKTLLARAVASQ 151
L+G G+GK+++A S+
Sbjct: 47 LFLHGRAGSGKSVIASQALSK 67
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 5.5
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 133 LYGPPGTGKTLLARAVASQLDANFLK 158
GP G+GK+ + + + L +
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 26.7 bits (58), Expect = 5.9
Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 22/148 (14%)
Query: 113 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAV 172
P + P+ P +L G GTGK A +A KV ++ V
Sbjct: 4 PKVIPD-------KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVG------LVGADV 50
Query: 173 IFLHMPNLCDSHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVK---------HPITL 223
G + K + + + ++ H
Sbjct: 51 YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGE 110
Query: 224 QVWGEALLSTILISLAPFLILFVVPLDT 251
+ + I ++ P + V+
Sbjct: 111 EAALLEEMKNIYEAIKPDEVTLVIDASI 138
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.0 bits (56), Expect = 6.2
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 132 LLYGPPGTGKTL-LARAVASQLDANFLKVVSRTIAIVLI--FAVIFLHMPNLCDSHGHSH 188
L+ P G+GK+ + A A+Q + S + + PN+
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTIT 71
Query: 189 HSHEHSHDH 197
++
Sbjct: 72 TGSPITYST 80
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 26.4 bits (57), Expect = 6.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQLDANFL 157
K + G PG+GK + + L
Sbjct: 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 6.5
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHS 190
L+ G GKT + + + + + +S T+ + N+ D G
Sbjct: 5 LLMLGLDNAGKTTILK----KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 191 HEHSHDH 197
+
Sbjct: 61 SYWRNYF 67
>d2f5tx1 b.38.5.1 (X:247-338) Transcriptional regulator TrmB
{Thermococcus litoralis [TaxId: 2265]}
Length = 92
Score = 25.2 bits (55), Expect = 7.2
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 9 VRH--KTLQDYRKKLTEHAEVEGRLRETTNGPRYVVG 43
+ H ++++ K +AE+ G+ E + + G
Sbjct: 10 MFHAVDFVKNHLKNRNIYAEITGKNLE-SGRLETLTG 45
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 128 PKGCLLYGPPGTGKTLLARAVASQL 152
P+ L+ G GTGK++L R +A
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTG 74
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.8 bits (55), Expect = 7.4
Identities = 10/67 (14%), Positives = 15/67 (22%)
Query: 131 CLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHGHSHHS 190
+L PG GKT A ++ + + L S
Sbjct: 10 TVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFS 69
Query: 191 HEHSHDH 197
S
Sbjct: 70 AHGSGRE 76
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.6 bits (58), Expect = 7.5
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 96 IGGLSEQIRELREVIE--LPL-------------LNPELFQRVGITPPKGCLLY---GPP 137
+ G++E + L EV E LPL L Q +G + + G
Sbjct: 31 LKGINEDL-SLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSV 89
Query: 138 GTGKTLLARAVASQLDANF 156
GK+ AR + + L
Sbjct: 90 AVGKSTTARVLQALLSRWP 108
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.1 bits (56), Expect = 7.8
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 132 LLYGPPGTGKTLLARAVASQLDANFL 157
+ G PG GK + L
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 7.9
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 132 LLYGPPGTGKT-LLARAVASQLDANFLKV-VSRTIAIVLIFAVIFLHMPNLCDSHGHSHH 189
L G +GKT L R + Q + S I V L + +L
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 190 SHEHSHDHGKLPSFKYSKQANEPYHQDVKH 219
+ + F A + +DV
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAE 93
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 26.3 bits (56), Expect = 8.0
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 14/111 (12%)
Query: 123 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV-------SRTIAIVLIFAVIFL 175
+ + KG GTGKT + + L V + ++L + +
Sbjct: 4 ITVASGKG-------GTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPV 56
Query: 176 HMPNLCDSHGHSHHSHEHSHDHGKLPSFKYSKQANEPYHQDVKHPITLQVW 226
+ N+ + K+ S + + + + Q+
Sbjct: 57 TLQNVLAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIM 107
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.2 bits (57), Expect = 9.7
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Query: 126 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSRTIAIVLIFAVIFLHMPNLCDSHG 185
P L+ G G GKT +A Q + V+ + G
Sbjct: 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM------LAAGDTFRAAAVEQLQVWG 60
Query: 186 HSHHSHEHSHDHGKLP 201
++ + G
Sbjct: 61 QRNNIPVIAQHTGADS 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,930,928
Number of extensions: 92073
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 126
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)