BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11254
(741 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/456 (56%), Positives = 316/456 (69%), Gaps = 71/456 (15%)
Query: 8 EVRHKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHC 67
E +K L +++KL EH + +L++ R+ +++L K YDK+END+KALQS+GQ
Sbjct: 51 EAHNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQ------L 104
Query: 68 VREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDK 127
+ E +KEL+++ IVKA++GPRY+VG R +D+
Sbjct: 105 IGEVMKELSEE---------------------------KYIVKASSGPRYIVGVRNSVDR 137
Query: 128 AKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVI 187
+KLK G RV LD+TTLTIMR LPRE DPLVYNM+ + G+IT+ IGGL+EQIRELREVI
Sbjct: 138 SKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVI 197
Query: 188 ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247
ELPL NPE+FQRVGI PPKG LLYGPPGTGKTLLA+AVA+ + ANF+
Sbjct: 198 ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI------------- 244
Query: 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307
+ P +S IVDKYIGESAR+IREMF YA+ H+PCIIFMDE
Sbjct: 245 --------------------FSP--ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGR 367
+DAIGGRRFSEGTSADREIQRTLMELL QMDGFD+LGQ K+IMATNRPDTLDPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 368 LDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAG 427
LDRK+EIPLPNE RL IH + K GE D+EA VK+SD FNGAD+RN TEAG
Sbjct: 343 LDRKVEIPLPNEAGRLEI---FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAG 399
Query: 428 LFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYR 463
FAIR +R+++ +D MKAVRKV++ KKL+ Y+
Sbjct: 400 FFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQ 435
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/447 (56%), Positives = 301/447 (67%), Gaps = 83/447 (18%)
Query: 60 QHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWT---VIVKATNGPR 116
++D L R+ +++L K YDK+END+KALQS+GQ L V K + IVKA++GPR
Sbjct: 69 RYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQ--LIGEVMKELSEEKYIVKASSGPR 126
Query: 117 YVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGL 176
Y+VG R +D++KLK G RV LD+TTLTIMR LPRE DPLVYNM+ + G+IT+ IGGL
Sbjct: 127 YIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGL 186
Query: 177 SEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 236
+EQIRELREVIELPL NPE+FQRVGI PPKG LLYGPPGTGKTLLA+AVA+ + ANF+
Sbjct: 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI-- 244
Query: 237 VSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR 296
+ P +S IVDKYIGESAR+IREMF YA+
Sbjct: 245 -------------------------------FSP--ASGIVDKYIGESARIIREMFAYAK 271
Query: 297 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356
H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELL QMDGFD+LGQ K+IMATNRPD
Sbjct: 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331
Query: 357 TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNG 416
TLDPALLRPGRLDRK+EIPLPNE RL IH + K GE D+EA VK+SD FNG
Sbjct: 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEI---FKIHTAKVKKTGEFDFEAAVKMSDGFNG 388
Query: 417 ADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSERE 476
AD+RN TEAG FAIR +R+
Sbjct: 389 ADIRNCA----------------------------------------TEAGFFAIRDDRD 408
Query: 477 YVTQEDFMKAVRKVSDNKKLESKLDYK 503
++ +D MKAVRKV++ KKLE ++Y+
Sbjct: 409 HINPDDLMKAVRKVAEVKKLEGTIEYQ 435
Score = 308 bits (790), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 149/205 (72%), Positives = 166/205 (80%), Gaps = 1/205 (0%)
Query: 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560
+ + VIELPL NPE+FQRVGI PPKG LLYGPPGTGKTLLA+AVA+ + ANF+ +S I
Sbjct: 192 ELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251
Query: 561 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 620
VDKYIGESAR+IREMF YA+ H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELL Q
Sbjct: 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311
Query: 621 MDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH 680
MDGFD+LGQ K+IMATNRPDTLDPALLRPGRLDRK+EIPLPNE RLEI KIH + K
Sbjct: 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT 371
Query: 681 GEIG-DAATKWVLPFTAGGFIYIAT 704
GE +AA K F AT
Sbjct: 372 GEFDFEAAVKMSDGFNGADIRNCAT 396
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 193/534 (36%), Positives = 293/534 (54%), Gaps = 56/534 (10%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED-FMKAVRKV 450
H + ++D E V + GADL +C+EA L AIR + + + ED + A
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 451 SDNKKLDHCNSYRTEAGLFAIRS---EREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIE 507
S +D +++ A+R E VT ED + + D K+ + + +++
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED----IGGLEDVKR-----ELQELVQ 494
Query: 508 LPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGE 567
P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ + ++ + GE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554
Query: 568 SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 627
S +RE+F+ AR PC++F DE+D+I R R + ++L +MDG +
Sbjct: 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614
Query: 628 GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK--IHAGPIAK 679
V +I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+ ILK + P+AK
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 42/313 (13%)
Query: 122 RRQLDKAKLKSGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGDITYSAIGGLS 177
R+++D L+ T A M +L + R+ + +P + + +T+ IGGL
Sbjct: 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 178 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 237
+ REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN 297
+T + GES +RE+F+ AR
Sbjct: 544 GPELLTM-----------------------------------WFGESEANVREIFDKARQ 568
Query: 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357
PC++F DE+D+I R R + ++L +MDG + V +I ATNRPD
Sbjct: 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628
Query: 358 LDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGA 417
+DPA+LRPGRLD+ I IPLP+E++R+A ++ P+AK ++D E + K+++ F+GA
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEKSRVA-ILKANLRKSPVAK--DVDLEFLAKMTNGFSGA 685
Query: 418 DLRNVCTEAGLFA 430
DL +C A A
Sbjct: 686 DLTEICQRACKLA 698
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 318 bits (816), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 192/534 (35%), Positives = 293/534 (54%), Gaps = 56/534 (10%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED-FMKAVRKV 450
H + ++D E V + GADL +C+EA L AIR + + + ED + A
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMN 443
Query: 451 SDNKKLDHCNSYRTEAGLFAIRS---EREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIE 507
S +D +++ A+R E VT ED + + D K+ + + +++
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED----IGGLEDVKR-----ELQELVQ 494
Query: 508 LPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGE 567
P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ + ++ + GE
Sbjct: 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554
Query: 568 SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 627
S +RE+F+ AR PC++F DE+D+I R R + ++L +MDG +
Sbjct: 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614
Query: 628 GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK--IHAGPIAK 679
V +I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+ ILK + P+AK
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 42/313 (13%)
Query: 122 RRQLDKAKLKSGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGDITYSAIGGLS 177
R+++D L+ T A M +L + R+ + +P + + +T+ IGGL
Sbjct: 424 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 178 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 237
+ REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN 297
+T + GES +RE+F+ AR
Sbjct: 544 GPELLTM-----------------------------------WFGESEANVREIFDKARQ 568
Query: 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357
PC++F DE+D+I R R + ++L +MDG + V +I ATNRPD
Sbjct: 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628
Query: 358 LDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGA 417
+DPA+LRPGRLD+ I IPLP+E++R+A ++ P+AK ++D E + K+++ F+GA
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEKSRVA-ILKANLRKSPVAK--DVDLEFLAKMTNGFSGA 685
Query: 418 DLRNVCTEAGLFA 430
DL +C A A
Sbjct: 686 DLTEICQRACKLA 698
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/348 (45%), Positives = 221/348 (63%), Gaps = 39/348 (11%)
Query: 116 RYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGG 175
++VVG ++ ++ G RV +D + I LP +DP V M+ E+ D+TYS +GG
Sbjct: 154 KFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGG 213
Query: 176 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 235
+QI +LREV+ELPLL+PE F +GI PPKG LLYGPPGTGKTL ARAVA++ DA F++
Sbjct: 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273
Query: 236 VVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA 295
V+ S +V KY+GE AR++RE+F A
Sbjct: 274 VIGS-----------------------------------ELVQKYVGEGARMVRELFEMA 298
Query: 296 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 355
R + CIIF DEIDA+GG RF +G D E+QRT++EL+ Q+DGFD G +K++ ATNRP
Sbjct: 299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358
Query: 356 DTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFN 415
+TLDPALLRPGR+DRK+E LP+ + R A+ + IH+ ++ I +E + +L +
Sbjct: 359 NTLDPALLRPGRIDRKVEFSLPDLEGR-ANIF--RIHSKSMSVERGIRWELISRLCPNST 415
Query: 416 GADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV-SDNKKLDHCNSY 462
GA+LR+VCTEAG+FAIR+ R+ T++DF+KAV KV S KK + Y
Sbjct: 416 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRY 463
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 134/170 (78%)
Query: 505 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 564
V+ELPLL+PE F +GI PPKG LLYGPPGTGKTL ARAVA++ DA F++V+ S +V KY
Sbjct: 224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283
Query: 565 IGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 624
+GE AR++RE+F AR + CIIF DEIDA+GG RF +G D E+QRT++EL+ Q+DGF
Sbjct: 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343
Query: 625 DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
D G +K++ ATNRP+TLDPALLRPGR+DRK+E LP+ + R I +IH+
Sbjct: 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 218/374 (58%), Gaps = 39/374 (10%)
Query: 83 ENDLKALQSVGQ-VSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMT 141
+++L+ LQ G V + V+VK +Y+V + ++ LK+ RV L
Sbjct: 59 KDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSD 118
Query: 142 TLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG 201
+ + + L + DPLV M E D TY +GGL++QI+E++EVIELP+ +PELF+ +G
Sbjct: 119 SYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG 178
Query: 202 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRST 261
I PKG +LYGPPGTGKTLLARAVA D F++V
Sbjct: 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV------------------------- 213
Query: 262 HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321
+ +V KYIGE +R++RE+F AR H P IIFMDEID+IG R
Sbjct: 214 ----------SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG 263
Query: 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA 381
D E+QRT++ELLNQ+DGF++ +K+IMATNR D LDPALLRPGR+DRKIE P P+ A
Sbjct: 264 GDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323
Query: 382 RLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQE 441
R + IH+ + I+ V + + +GAD++ VCTEAG++A+R R +VTQE
Sbjct: 324 R---AEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQE 380
Query: 442 DFMKAVRKVSDNKK 455
DF AV KV + +
Sbjct: 381 DFELAVGKVMNKNQ 394
Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 105/174 (60%), Positives = 132/174 (75%)
Query: 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560
+ K VIELP+ +PELF+ +GI PKG +LYGPPGTGKTLLARAVA D F++V + +
Sbjct: 159 EIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218
Query: 561 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 620
V KYIGE +R++RE+F AR H P IIFMDEID+IG R D E+QRT++ELLNQ
Sbjct: 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278
Query: 621 MDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
+DGF++ +K+IMATNR D LDPALLRPGR+DRKIE P P+ AR EIL+IH+
Sbjct: 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 204/347 (58%), Gaps = 38/347 (10%)
Query: 108 IVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGD 167
IV + P Y V +DK L+ G V L T++I+ L + DP+V M +
Sbjct: 119 IVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPT 178
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+YS IGGL QI+E++E +ELPL +PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+
Sbjct: 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
Q A FL++V S ++ KY+G+ RL
Sbjct: 239 QTSATFLRIVGS-----------------------------------ELIQKYLGDGPRL 263
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
R++F A + P I+F+DEIDAIG +R+ + +REIQRT++ELLNQ+DGFD G VK
Sbjct: 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
+IMATN+ +TLDPAL+RPGR+DRKI P+ + + IH + +++ E +
Sbjct: 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTK---KKILGIHTSKMNLSEDVNLETL 380
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454
V D +GAD++ +CTEAGL A+R R VT EDF +A +V NK
Sbjct: 381 VTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/185 (54%), Positives = 138/185 (74%), Gaps = 1/185 (0%)
Query: 491 SDNKKLESKL-DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 549
SD LES++ + K +ELPL +PEL++ +GI PPKG +LYG PGTGKTLLA+AVA+Q
Sbjct: 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241
Query: 550 ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 609
A FL++V S ++ KY+G+ RL R++F A + P I+F+DEIDAIG +R+ + +RE
Sbjct: 242 ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGERE 301
Query: 610 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669
IQRT++ELLNQ+DGFD G VK+IMATN+ +TLDPAL+RPGR+DRKI P+ + +I
Sbjct: 302 IQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361
Query: 670 LKIHA 674
L IH
Sbjct: 362 LGIHT 366
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/284 (47%), Positives = 186/284 (65%), Gaps = 38/284 (13%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++ Y IGGL +Q++E+REV+ELPL +PELF++VGI PPKG LLYGPPGTGKTLLA+AVA
Sbjct: 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ +A F++VV S +V K+IGE A
Sbjct: 73 TETNATFIRVVGS-----------------------------------ELVKKFIGEGAS 97
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346
L++++F A+ P IIF+DEIDAI +R T DRE+QRTLM+LL +MDGFD+ G V
Sbjct: 98 LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV 157
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
K+I ATNRPD LDPA+LRPGR DR IE+P P+E+ RL + IH + +++ E
Sbjct: 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI---LKIHTRKMNLAEDVNLEE 214
Query: 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ K+++ GA+L+ +CTEAG+ AIR R+YVT +DF KAV K+
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258
Score = 235 bits (599), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 138/173 (79%)
Query: 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560
+ + V+ELPL +PELF++VGI PPKG LLYGPPGTGKTLLA+AVA++ +A F++VV S +
Sbjct: 28 EIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87
Query: 561 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 620
V K+IGE A L++++F A+ P IIF+DEIDAI +R T DRE+QRTLM+LL +
Sbjct: 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147
Query: 621 MDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
MDGFD+ G VK+I ATNRPD LDPA+LRPGR DR IE+P P+E+ RLEILKIH
Sbjct: 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 254/459 (55%), Gaps = 49/459 (10%)
Query: 2 TTPVVDEVRHKTLQDYRKKLTEHAEV-EGRLREMREQLKELTKQ----YDKSENDLKALQ 56
T P DE+ + L ++L A++ + +R R +L+ L+ + +K +++ + ++
Sbjct: 11 TLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70
Query: 57 SVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSL-STSVSKCWTVIVKATNGP 115
+ Q L+ V E + ++ + DK EN Q G V+L +T+V K +VK ++
Sbjct: 71 NNRQLPYLVANVVEVM-DMNEIEDK-ENSESTTQG-GNVNLDNTAVGKA--AVVKTSSRQ 125
Query: 116 RYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGG 175
+ +D KLK V ++ + I+ LP E D V M ++ TYS +GG
Sbjct: 126 TVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGG 185
Query: 176 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 235
L +QI EL E I LP+ + F+ +GI PKG L+YGPPGTGKTLLARA A+Q +A FLK
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245
Query: 236 VVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA 295
+ + +V YIGE A+L+R+ F A
Sbjct: 246 LAAP-----------------------------------QLVQMYIGEGAKLVRDAFALA 270
Query: 296 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 355
+ P IIF+DE+DAIG +RF S DRE+QRT++ELLNQ+DGF S +VK++ ATNR
Sbjct: 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330
Query: 356 DTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFN 415
D LDPALLR GRLDRKIE PLP+E +R + IH+ + +I+++ + + +D FN
Sbjct: 331 DVLDPALLRSGRLDRKIEFPLPSEDSR---AQILQIHSRKMTTDDDINWQELARSTDEFN 387
Query: 416 GADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454
GA L+ V EAG+ A+R+ + V EDF++ + +V K
Sbjct: 388 GAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARK 426
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 131/179 (73%)
Query: 506 IELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI 565
I LP+ + F+ +GI PKG L+YGPPGTGKTLLARA A+Q +A FLK+ + +V YI
Sbjct: 197 IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256
Query: 566 GESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 625
GE A+L+R+ F A+ P IIF+DE+DAIG +RF S DRE+QRT++ELLNQ+DGF
Sbjct: 257 GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316
Query: 626 SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIG 684
S +VK++ ATNR D LDPALLR GRLDRKIE PLP+E +R +IL+IH+ + +I
Sbjct: 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN 375
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 157/430 (36%), Positives = 236/430 (54%), Gaps = 54/430 (12%)
Query: 37 QLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQV- 95
+LK+L K+Y+ L LQ ++++ + L ++ +++ ++K +QSV V
Sbjct: 50 KLKKLEKEYE-----LLTLQE--------DYIKDEQRHLKRELKRAQEEVKRIQSVPLVI 96
Query: 96 -SLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVD 154
+ + T IV +T G YVV LD+ LK VAL + ++ LP + D
Sbjct: 97 GQFLEPIDQN-TGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSD 155
Query: 155 PLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPP 214
+ M + D+TY+ +GGL Q +E+RE +ELPL+ +L++++GI PP+G LLYGPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 215 GTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSS 274
GTGKT+L +AVA+ A F++V S FV
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFV-------------------------------- 243
Query: 275 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 334
KY+GE R++R++F AR + P IIF+DE+D+I +RF T +DRE+QR L+ELL
Sbjct: 244 ---HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL 300
Query: 335 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394
QMDGFD VK+IMATNR DTLDPALLRPGRLDRKIE P+ + R A
Sbjct: 301 TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIE--FPSLRDRRERRLIFGTIAS 358
Query: 395 PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA-VRKVSDN 453
++ E D ++++ +DS +GA + + EAGL A+R R + Q D +A +V +
Sbjct: 359 KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418
Query: 454 KKLDHCNSYR 463
+D + Y+
Sbjct: 419 NTVDKFDFYK 428
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 122/161 (75%)
Query: 499 KLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS 558
K + + +ELPL+ +L++++GI PP+G LLYGPPGTGKT+L +AVA+ A F++V S
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 559 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 618
V KY+GE R++R++F AR + P IIF+DE+D+I +RF T +DRE+QR L+ELL
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL 300
Query: 619 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 659
QMDGFD VK+IMATNR DTLDPALLRPGRLDRKIE P
Sbjct: 301 TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 341
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 155/283 (54%), Gaps = 39/283 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ +GG E I EL+EV+E L +P F R+G PKG LL GPPGTGKTLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ + F + S FV + ++G A
Sbjct: 72 EANVPFFHISGSDFV-----------------------------------ELFVGVGAAR 96
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G R + E ++TL +LL +MDGFDS +
Sbjct: 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR D+KI + P+ R I P+A+ +++ E +
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR-KKILEIHTRNKPLAE--DVNLEII 213
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
K + F GADL N+ EA L A R R+ +T +DF +A+ +V
Sbjct: 214 AKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 124/199 (62%), Gaps = 10/199 (5%)
Query: 484 MKAVRKVSDNKKL---------ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPG 534
M + K S NK++ E+ + K V+E L +P F R+G PKG LL GPPG
Sbjct: 1 MATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPG 59
Query: 535 TGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 594
TGKTLLARAVA + + F + S V+ ++G A +R++F A+ H PCI+F+DEIDA
Sbjct: 60 TGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119
Query: 595 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDR 654
+G R + E ++TL +LL +MDGFDS + ++ ATNRPD LDPALLRPGR D+
Sbjct: 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDK 179
Query: 655 KIEIPLPNEQARLEILKIH 673
KI + P+ R +IL+IH
Sbjct: 180 KIVVDPPDMLGRKKILEIH 198
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 154/283 (54%), Gaps = 39/283 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ +GG E I EL+EV+E L +P F R+G PKG LL GPPGTG TLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ + F + S FV + ++G A
Sbjct: 72 EANVPFFHISGSDFV-----------------------------------ELFVGVGAAR 96
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G R + E ++TL +LL +MDGFDS +
Sbjct: 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR D+KI + P+ R I P+A+ +++ E +
Sbjct: 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR-KKILEIHTRNKPLAE--DVNLEII 213
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
K + F GADL N+ EA L A R R+ +T +DF +A+ +V
Sbjct: 214 AKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 123/199 (61%), Gaps = 10/199 (5%)
Query: 484 MKAVRKVSDNKKL---------ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPG 534
M + K S NK++ E+ + K V+E L +P F R+G PKG LL GPPG
Sbjct: 1 MATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPG 59
Query: 535 TGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 594
TG TLLARAVA + + F + S V+ ++G A +R++F A+ H PCI+F+DEIDA
Sbjct: 60 TGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119
Query: 595 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDR 654
+G R + E ++TL +LL +MDGFDS + ++ ATNRPD LDPALLRPGR D+
Sbjct: 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDK 179
Query: 655 KIEIPLPNEQARLEILKIH 673
KI + P+ R +IL+IH
Sbjct: 180 KIVVDPPDMLGRKKILEIH 198
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 147/263 (55%), Gaps = 38/263 (14%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ IGGL + REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A+
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ ANF+ + +T + GES
Sbjct: 72 ECQANFISIKGPELLTM-----------------------------------WFGESEAN 96
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+RE+F+ AR PC++F DE+D+I R R + ++L +MDG + V
Sbjct: 97 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
+I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+A ++ P+AK ++D E +
Sbjct: 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA-ILKANLRKSPVAK--DVDLEFL 213
Query: 408 VKLSDSFNGADLRNVCTEAGLFA 430
K+++ F+GADL +C A A
Sbjct: 214 AKMTNGFSGADLTEICQRACKLA 236
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 119/183 (65%), Gaps = 2/183 (1%)
Query: 499 KLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS 558
K + + +++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 24 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83
Query: 559 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 618
++ + GES +RE+F+ AR PC++F DE+D+I R R + ++L
Sbjct: 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 143
Query: 619 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK--IHAGP 676
+MDG + V +I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+ ILK + P
Sbjct: 144 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 203
Query: 677 IAK 679
+AK
Sbjct: 204 VAK 206
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 153/291 (52%), Gaps = 39/291 (13%)
Query: 160 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 219
M ED T++ + G E E+ E++E L P FQ++G PKG L+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 220 LLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK 279
LLA+A+A + F + S FV +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFV-----------------------------------EM 84
Query: 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339
++G A +R+MF A+ PCIIF+DEIDA+G +R + E ++TL ++L +MDG
Sbjct: 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144
Query: 340 FDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399
F+ + +I ATNRPD LDPALLRPGR DR++ + LP+ + R + + P+A
Sbjct: 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR-EQILKVHMRRVPLAP- 202
Query: 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ID + + + F+GADL N+ EA LFA R + V+ +F KA K+
Sbjct: 203 -DIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Query: 497 ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
E+K + ++E L P FQ++G PKG L+ GPPGTGKTLLA+A+A + F +
Sbjct: 19 EAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616
S V+ ++G A +R+MF A+ PCIIF+DEIDA+G +R + E ++TL +
Sbjct: 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137
Query: 617 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
+L +MDGF+ + +I ATNRPD LDPALLRPGR DR++ + LP+ + R +ILK+H
Sbjct: 138 MLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH 194
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
H + ++D E V + GADL +C+EA L AIR + + + ED
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K ++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA++ A F + I+
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K GES +R+ F A + P IIF+DE+DAI +R E T + E +R + +LL MD
Sbjct: 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMD 333
Query: 623 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
G V ++ ATNRP+++DPAL R GR DR+++I +P+ RLEIL+IH
Sbjct: 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
H + ++D E V + GADL +C+EA L AIR + + + ED
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K ++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA++ A F + I+
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K GES +R+ F A + P IIF+DE+DAI +R E T + E +R + +LL MD
Sbjct: 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMD 333
Query: 623 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
G V ++ ATNRP+++DPAL R GR DR+++I +P+ RLEIL+IH
Sbjct: 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y IGG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
H + ++D E V + GADL +C+EA L AIR + + + ED
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K ++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA++ A F + I+
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K GES +R+ F A + P IIF+DE+DAI +R E T + E +R + +LL MD
Sbjct: 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMD 333
Query: 623 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
G V ++ ATNRP+++DPAL R GR DR+++I +P+ RLEIL+IH
Sbjct: 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 152 EVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLY 211
E +P+ E ++ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GPPGTGKTL+ARAVA++ A F F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF-----------------------------------FLI 269
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331
I+ K GES +R+ F A + P IIF+DE+DAI +R E T + E +R +
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVS 326
Query: 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
+LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RL + I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQI 383
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
H + ++D E V + GADL +C+EA L AIR + + + ED
Sbjct: 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K ++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA++ A F + I+
Sbjct: 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K GES +R+ F A + P IIF+DE+DAI +R E T + E +R + +LL MD
Sbjct: 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMD 333
Query: 623 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
G V ++ ATNRP+++DPAL R GR DR+++I +P+ RLEIL+IH
Sbjct: 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%)
Query: 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESA 569
L NP F +G PKG LL GPPG GKT LARAVA + F+ S V+ ++G A
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 570 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 629
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178
Query: 630 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R +IL+IHA
Sbjct: 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 147/283 (51%), Gaps = 39/283 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ F+ S FV + ++G A
Sbjct: 96 EARVPFITASGSDFV-----------------------------------EMFVGVGAAR 120
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+ +
Sbjct: 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR DR+I I P+ + R I P+A+ ++D +
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR-EQILRIHARGKPLAE--DVDLALL 237
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
K + F GADL N+ EA L A R R +T +D +A +V
Sbjct: 238 AKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 280
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%)
Query: 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESA 569
L NP F +G PKG LL GPPG GKT LARAVA + F+ S V+ ++G A
Sbjct: 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 570 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 629
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169
Query: 630 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R +IL+IHA
Sbjct: 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 147/283 (51%), Gaps = 39/283 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ F+ S FV + ++G A
Sbjct: 87 EARVPFITASGSDFV-----------------------------------EMFVGVGAAR 111
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+ +
Sbjct: 112 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 171
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR DR+I I P+ + R I P+A+ ++D +
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR-EQILRIHARGKPLAE--DVDLALL 228
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
K + F GADL N+ EA L A R R +T +D +A +V
Sbjct: 229 AKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%)
Query: 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESA 569
L NP F +G PKG LL GPPG GKT LARAVA + F+ S V+ ++G A
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 570 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 629
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178
Query: 630 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R +IL+IHA
Sbjct: 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 145/280 (51%), Gaps = 39/280 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ F+ S FV + ++G A
Sbjct: 96 EARVPFITASGSDFV-----------------------------------EMFVGVGAAR 120
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+ +
Sbjct: 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR DR+I I P+ + R I P+A+ ++D +
Sbjct: 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR-EQILRIHARGKPLAE--DVDLALL 237
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447
K + F GADL N+ EA L A R R +T +D +A
Sbjct: 238 AKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 108/165 (65%)
Query: 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESA 569
L NP F +G PKG LL GPPG GKT LARAVA + F+ S V+ ++G A
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 570 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 629
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154
Query: 630 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R +IL+IHA
Sbjct: 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 39/279 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LARAVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ F+ S FV + ++G A
Sbjct: 72 EARVPFITASGSDFV-----------------------------------EMFVGVGAAR 96
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+ +
Sbjct: 97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 156
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRPD LDPALLRPGR DR+I I P+ + R I P+A+ ++D +
Sbjct: 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR-EQILRIHARGKPLAE--DVDLALL 213
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA 446
K + F GADL N+ EA L A R R +T +D +A
Sbjct: 214 AKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 40/270 (14%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++T++ IG L + EL I P+ NP+ F+ +G+ P G LL GPPG GKTLLA+AVA
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ NF+ V +++ Y+GES R
Sbjct: 66 NESGLNFISV-----------------------------------KGPELLNMYVGESER 90
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346
+R++F A+N PC+IF DE+DA+ RR T A R + +LL +MDG ++ QV
Sbjct: 91 AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS---VRVVNQLLTEMDGLEARQQV 147
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
++ ATNRPD +DPA+LRPGRLD+ + + LP RLA I+ + +++ EA
Sbjct: 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEA 207
Query: 407 VVK--LSDSFNGADLRNVCTEAGLFAIRSE 434
+ D + GADL + EA + A+R E
Sbjct: 208 IAGDLRCDCYTGADLSALVREASICALRQE 237
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 113/173 (65%), Gaps = 7/173 (4%)
Query: 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGES 568
P+ NP+ F+ +G+ P G LL GPPG GKTLLA+AVA++ NF+ V +++ Y+GES
Sbjct: 29 PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
R +R++F A+N PC+IF DE+DA+ RR T A R + +LL +MDG ++
Sbjct: 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS---VRVVNQLLTEMDGLEARQ 145
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHG 681
QV ++ ATNRPD +DPA+LRPGRLD+ + + LP RL ILK I K+G
Sbjct: 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKT----ITKNG 194
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 155/295 (52%), Gaps = 48/295 (16%)
Query: 160 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 219
++ E P ++ + + G E E+ E+++ L PE + +G PKG LL GPPGTGKT
Sbjct: 1 INAEKP-NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKT 58
Query: 220 LLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYS---SAI 276
LLA+AVA + + PF+S S+
Sbjct: 59 LLAKAVAGE--------------------------------------AHVPFFSMGGSSF 80
Query: 277 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLN 335
++ ++G A +R++F A+ P IIF+DEIDAIG R + G S + E ++TL +LL
Sbjct: 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA 140
Query: 336 QMDGFDSLGQ-VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394
+MDGF S V ++ ATNRP+ LDPAL+RPGR DR++ + P+ R+ + +H
Sbjct: 141 EMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRV---EILKVHIK 197
Query: 395 PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449
+ +++ + V KL+ GADL N+ EA L A R+ ++ V Q+ +AV +
Sbjct: 198 GVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 513 PELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLI 572
PE + +G PKG LL GPPGTGKTLLA+AVA + F + S+ ++ ++G A +
Sbjct: 33 PERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRV 92
Query: 573 REMFNYARNHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQMDGFDSLGQ-V 630
R++F A+ P IIF+DEIDAIG R + G S + E ++TL +LL +MDGF S V
Sbjct: 93 RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPV 152
Query: 631 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
++ ATNRP+ LDPAL+RPGR DR++ + P+ R+EILK+H
Sbjct: 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH 195
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 148/284 (52%), Gaps = 38/284 (13%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+++ + G+ E E+RE ++ L +PE F ++G PKG LL GPPG GKTLLA+AVA+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ FL + + FV ++G G A
Sbjct: 62 EAQVPFLAMAGAEFVE-------VIG----------------------------GLGAAR 86
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQMDGFDSLGQV 346
+R +F AR PCI+++DEIDA+G +R + + ++ E ++TL +LL +MDG + V
Sbjct: 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
++ +TNR D LD AL+RPGRLDR + I LP Q R + + + + + +
Sbjct: 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER-REIFEQHLKSLKLTQSSTFYSQR 205
Query: 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ +L+ F+GAD+ N+C EA L A R V +F AV +V
Sbjct: 206 LAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Query: 497 ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
E+KL+ + ++ L +PE F ++G PKG LL GPPG GKTLLA+AVA++ FL +
Sbjct: 13 EAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLM 615
+ V+ G A +R +F AR PCI+++DEIDA+G +R + + ++ E ++TL
Sbjct: 72 GAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN 131
Query: 616 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
+LL +MDG + V ++ +TNR D LD AL+RPGRLDR + I LP Q R EI + H
Sbjct: 132 QLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 52/308 (16%)
Query: 160 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGK 218
M H P + + I G+ ++E++ P+L P++F G+ PPKG LL+GPPGTGK
Sbjct: 75 MDHGPP--VNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGK 130
Query: 219 TLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVD 278
TL+ + +ASQ A T+F +S++
Sbjct: 131 TLIGKCIASQSGA-----------------------------------TFFSISASSLTS 155
Query: 279 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338
K++GE +++R +F AR QP +IF+DEID++ +R G +R E L Q+D
Sbjct: 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLD 212
Query: 339 GFDSLGQVKMIM--ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPI 396
G + + ++++ ATNRP +D A R RL +++ IPLP AR I++ +
Sbjct: 213 GATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV--INLMSKEQ 268
Query: 397 AKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKL 456
E + E +V+ SD+F+GAD+ +C EA L IRS + VR ++ +
Sbjct: 269 CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIA---YI 325
Query: 457 DHCNSYRT 464
D N++RT
Sbjct: 326 DFENAFRT 333
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 10/176 (5%)
Query: 498 SKLDYKPVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
+K K ++ P+L P++F G+ PPKG LL+GPPGTGKTL+ + +ASQ A F +
Sbjct: 92 AKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616
+S++ K++GE +++R +F AR QP +IF+DEID++ +R G +R E
Sbjct: 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTE 206
Query: 617 LLNQMDGFDSLGQVKMIM--ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEIL 670
L Q+DG + + ++++ ATNRP +D A R RL +++ IPLP AR +I+
Sbjct: 207 FLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV 260
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 27/227 (11%)
Query: 452 DNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLE-SKLDYKPVIELPL 510
DNKKL S AI SE+ V ED LE +K K + LP+
Sbjct: 29 DNKKLRGALSS-------AILSEKPNVKWEDVAG----------LEGAKEALKEAVILPV 71
Query: 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESAR 570
P LF + P G LLYGPPGTGK+ LA+AVA++ ++ F V SS +V K++GES +
Sbjct: 72 KFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 130
Query: 571 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DSLG 628
L++++F AR ++P IIF+D++DA+ G R + A R I+ ELL QM+G DS G
Sbjct: 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQG 187
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675
V ++ ATN P LD A+ R R +R+I IPLP+ AR + +I+ G
Sbjct: 188 -VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 231
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 166/329 (50%), Gaps = 53/329 (16%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++ + + GL L+E + LP+ P LF + P G LLYGPPGTGK+ LA+AVA
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ ++ T+F SS +V K++GES +
Sbjct: 106 TEANS-----------------------------------TFFSVSSSDLVSKWMGESEK 130
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--DSLG 344
L++++F AR ++P IIF+D++DA+ G R + A R I+ ELL QM+G DS G
Sbjct: 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQG 187
Query: 345 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404
V ++ ATN P LD A+ R R +R+I IPLP+ AR + I++ P E DY
Sbjct: 188 -VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM-FEINVGDTPSVLTKE-DY 242
Query: 405 EAVVKLSDSFNGADLRNVCTEAGLFAIR-----SEREYVTQEDFMKAVRKVSDNKKLDHC 459
+ +++ ++G+D+ V +A + IR + + V+ ED RK++ + D
Sbjct: 243 RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED--DETRKLTPSSPGDDG 300
Query: 460 NSYRTEAGLFAIRSEREYVTQEDFMKAVR 488
+ + A + +T +DF+KA++
Sbjct: 301 AIEMSWTDIEADELKEPDLTIKDFLKAIK 329
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 25/226 (11%)
Query: 452 DNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLE-SKLDYKPVIELPL 510
DNKKL S AI SE+ V ED LE +K K + LP+
Sbjct: 14 DNKKLRGALSS-------AILSEKPNVKWEDVAG----------LEGAKEALKEAVILPV 56
Query: 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESAR 570
P LF + P G LLYGPPGTGK+ LA+AVA++ ++ F V SS +V K++GES +
Sbjct: 57 KFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 115
Query: 571 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 630
L++++F AR ++P IIF+D++DA+ G R + A R I+ ELL QM+G + Q
Sbjct: 116 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQG 172
Query: 631 KMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675
+++ ATN P LD A+ R R +R+I IPLP+ AR + +I+ G
Sbjct: 173 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 216
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 44/267 (16%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++ + + GL L+E + LP+ P LF + P G LLYGPPGTGK+ LA+AVA
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ ++ T+F SS +V K++GES +
Sbjct: 91 TEANS-----------------------------------TFFSVSSSDLVSKWMGESEK 115
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346
L++++F AR ++P IIF+D++DA+ G R + A R I+ ELL QM+G + Q
Sbjct: 116 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQG 172
Query: 347 KMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYE 405
+++ ATN P LD A+ R R +R+I IPLP+ AR + I++ P E DY
Sbjct: 173 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM-FEINVGDTPCVLTKE-DYR 228
Query: 406 AVVKLSDSFNGADLRNVCTEAGLFAIR 432
+ +++ ++G+D+ V +A + IR
Sbjct: 229 TLGAMTEGYSGSDIAVVVKDALMQPIR 255
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 7/174 (4%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K + LP+ P LF + P G LLYGPPGTGK+ LA+AVA++ ++ F V SS +V
Sbjct: 40 KEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 98
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K++GES +L++++F AR ++P IIF+DE+DA+ G R + A R I+ ELL QM+
Sbjct: 99 KWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIK---TELLVQMN 155
Query: 623 GFDSLGQVKMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675
G + Q +++ ATN P LD A+ R R +R+I IPLP+ AR + +I+ G
Sbjct: 156 GVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 207
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 51/339 (15%)
Query: 156 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPG 215
LV S + ++ + + GL L+E + LP+ P LF + P G LLYGPPG
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPG 70
Query: 216 TGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSA 275
TGK+ LA+AVA++ ++ T+F SS
Sbjct: 71 TGKSYLAKAVATEANS-----------------------------------TFFSVSSSD 95
Query: 276 IVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 335
+V K++GES +L++++F AR ++P IIF+DE+DA+ G R + A R I+ ELL
Sbjct: 96 LVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIK---TELLV 152
Query: 336 QMDGFDSLGQVKMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394
QM+G + Q +++ ATN P LD A+ R R +R+I IPLP+ AR + I++
Sbjct: 153 QMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM-FEINVGDT 209
Query: 395 PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIR-----SEREYVTQEDFMKAVRK 449
P E DY + +++ ++G+D+ V +A + IR + + V+ ED RK
Sbjct: 210 PCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED--DETRK 266
Query: 450 VSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVR 488
++ D + + A + +T +DF+KA++
Sbjct: 267 LTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIK 305
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 7/174 (4%)
Query: 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
K + LP+ P LF + P G LLYGPPGTGK+ LA+AVA++ ++ F V SS +V
Sbjct: 31 KEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
K++GES +L++++F AR ++P IIF+D++DA+ G R + A R I+ ELL QM+
Sbjct: 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMN 146
Query: 623 GFDSLGQVKMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675
G + Q +++ ATN P LD A+ R R +R+I IPLP+ AR + +I+ G
Sbjct: 147 GVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 198
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 171/342 (50%), Gaps = 53/342 (15%)
Query: 153 VDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYG 212
+DP +S E P ++ + + GL L+E + LP+ P LF + P G LLYG
Sbjct: 2 IDPFTAILS-EKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYG 58
Query: 213 PPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272
PPGTGK+ LA+AVA++ ++ T+F
Sbjct: 59 PPGTGKSYLAKAVATEANS-----------------------------------TFFSVS 83
Query: 273 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332
SS +V K++GES +L++++F AR ++P IIF+D++DA+ G R + A R I+ E
Sbjct: 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TE 140
Query: 333 LLNQMDGFDSLGQVKMIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISI 391
LL QM+G + Q +++ ATN P LD A+ R R +R+I IPLP+ AR + I++
Sbjct: 141 LLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM-FEINV 197
Query: 392 HAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIR-----SEREYVTQEDFMKA 446
P E DY + +++ ++G+D+ V +A + IR + + V+ ED
Sbjct: 198 GDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED--DE 254
Query: 447 VRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVR 488
RK++ D + + A + +T +DF+KA++
Sbjct: 255 TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIK 296
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 47/269 (17%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++ +S + GL L+E + LP+ P LF TP +G LL+GPPGTGK+ LA+AVA
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVA 188
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ + T+F SS +V K++GES +
Sbjct: 189 TEAN----------------------------------NSTFFSISSSDLVSKWLGESEK 214
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD--GFDSLG 344
L++ +F AR ++P IIF+DEID++ G R + A R I+ E L QM G D+ G
Sbjct: 215 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDG 271
Query: 345 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-GEID 403
+ ++ ATN P LD A+ R R +++I IPLP AR A +H G E D
Sbjct: 272 -ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAM---FRLHLGSTQNSLTEAD 325
Query: 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIR 432
++ + + +D ++GAD+ + +A + +R
Sbjct: 326 FQELGRKTDGYSGADISIIVRDALMQPVR 354
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 11/191 (5%)
Query: 489 KVSDNKKLE-SKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 547
K SD LE +K K + LP+ P LF TP +G LL+GPPGTGK+ LA+AVA++
Sbjct: 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATE 190
Query: 548 LD-ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 606
+ + F + SS +V K++GES +L++ +F AR ++P IIF+DEID++ G R + A
Sbjct: 191 ANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA 250
Query: 607 DREIQRTLMELLNQMD--GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664
R I+ E L QM G D+ G + ++ ATN P LD A+ R R +++I IPLP
Sbjct: 251 ARRIK---TEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 304
Query: 665 ARLEILKIHAG 675
AR + ++H G
Sbjct: 305 ARAAMFRLHLG 315
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 151/310 (48%), Gaps = 59/310 (19%)
Query: 156 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPP 214
L+ N ++ + + I G + L+E++ LP L PELF G+ P +G LL+GPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPP 157
Query: 215 GTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSS 274
G GKT+LA+AVA++ +A T+F ++
Sbjct: 158 GNGKTMLAKAVAAESNA-----------------------------------TFFNISAA 182
Query: 275 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 334
++ KY+GE +L+R +F AR QP IIF+D++D++ R A R ++ E L
Sbjct: 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLK---TEFL 239
Query: 335 NQMDGFDSLG--QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIH 392
+ DG S G +V ++ ATNRP LD A+LR R +++ + LPNE+ RL +
Sbjct: 240 IEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCK 297
Query: 393 AGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIR------------SEREYVTQ 440
G E+ + +++D ++G+DL + +A L IR SE +
Sbjct: 298 QGSPLTQKEL--AQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRL 355
Query: 441 EDFMKAVRKV 450
DF ++++K+
Sbjct: 356 SDFTESLKKI 365
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 10/165 (6%)
Query: 505 VIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 563
++ LP L PELF G+ P +G LL+GPPG GKT+LA+AVA++ +A F + ++++ K
Sbjct: 130 IVILPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187
Query: 564 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 623
Y+GE +L+R +F AR QP IIF+D++D++ R A R ++ E L + DG
Sbjct: 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLK---TEFLIEFDG 244
Query: 624 FDSLG--QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 666
S G +V ++ ATNRP LD A+LR R +++ + LPNE+ R
Sbjct: 245 VQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR 287
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 11/191 (5%)
Query: 489 KVSDNKKLE-SKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 547
K SD LE +K K + LP+ P LF TP +G LL+GPPGTGK+ LA+AVA++
Sbjct: 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATE 68
Query: 548 LD-ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 606
+ + F + SS +V K++GES +L++ +F AR ++P IIF+DEID++ G R + A
Sbjct: 69 ANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA 128
Query: 607 DREIQRTLMELLNQMD--GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664
R I+ E L QM G D+ G + ++ ATN P LD A+ R R +++I IPLP
Sbjct: 129 ARRIK---TEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182
Query: 665 ARLEILKIHAG 675
AR + K+H G
Sbjct: 183 ARAAMFKLHLG 193
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 47/269 (17%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
++ +S + GL L+E + LP+ P LF TP +G LL+GPPGTGK+ LA+AVA
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ + T+F SS +V K++GES +
Sbjct: 67 TEAN----------------------------------NSTFFSISSSDLVSKWLGESEK 92
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD--GFDSLG 344
L++ +F AR ++P IIF+DEID++ G R + A R I+ E L QM G D+ G
Sbjct: 93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDG 149
Query: 345 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-GEID 403
+ ++ ATN P LD A+ R R +++I IPLP AR A +H G E D
Sbjct: 150 -ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAM---FKLHLGTTQNSLTEAD 203
Query: 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIR 432
+ + + +D ++GAD+ + +A + +R
Sbjct: 204 FRELGRKTDGYSGADISIIVRDALMQPVR 232
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 155/324 (47%), Gaps = 62/324 (19%)
Query: 156 LVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGI-TPPKGCLLYGPP 214
L+ + E + ++ I G + L+E++ LP + PELF G+ P KG LL+GPP
Sbjct: 6 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPP 63
Query: 215 GTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSS 274
G GKTLLARAVA++ A FL + ++
Sbjct: 64 GNGKTLLARAVATECSATFLNI-----------------------------------SAA 88
Query: 275 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 334
++ KY+G+ +L+R +F AR+ QP IIF+DE+D++ R S A R ++ +
Sbjct: 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEF 148
Query: 335 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR-LAHTWPISIHA 393
+ + G ++ ++ ATNRP LD A LR R +++ + LP+EQ R L +
Sbjct: 149 DGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG 206
Query: 394 GPIAKHGEIDYEA---VVKLSDSFNGADLRNVCTEAGLFAIR------------SEREYV 438
P +D EA + K++D ++G+DL + +A L IR S +
Sbjct: 207 SP------LDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAI 260
Query: 439 TQEDFMKAVRKVSDNKKLDHCNSY 462
T++DF +++++ + NSY
Sbjct: 261 TEQDFHSSLKRIRRSVAPQSLNSY 284
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 105/170 (61%), Gaps = 5/170 (2%)
Query: 498 SKLDYKPVIELPLLNPELFQRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
+K + ++ LP + PELF G+ P KG LL+GPPG GKTLLARAVA++ A FL +
Sbjct: 29 AKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616
++++ KY+G+ +L+R +F AR+ QP IIF+DE+D++ R S A R ++ +
Sbjct: 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLV 146
Query: 617 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 666
+ + G ++ ++ ATNRP LD A LR R +++ + LP+EQ R
Sbjct: 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 391 IHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
IH+ ++ I +E + +L + GA+LR+VCTEAG+FAIR+ R+ T++DF+KAV KV
Sbjct: 19 IHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 78
Query: 451 -SDNKKLDHCNSY 462
S KK + Y
Sbjct: 79 ISGYKKFSSTSRY 91
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 415 NGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSE 474
G+ L ++ A +F I S+ V + + + ++ N S TEAG+FAIR+
Sbjct: 3 GGSSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 62
Query: 475 REYVTQEDFMKAVRKV-SDNKKLESKLDY 502
R+ T++DF+KAV KV S KK S Y
Sbjct: 63 RKVATEKDFLKAVDKVISGYKKFSSTSRY 91
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 391 IHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
IH+ + I +E + +L + GA+LR+VCTEAG FAIR+ R+ T++DF+KAV KV
Sbjct: 12 IHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKDFLKAVDKV 71
Query: 451 -SDNKKLDHCNSY 462
S KK + Y
Sbjct: 72 ISGYKKFSSTSRY 84
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 426 AGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMK 485
A +F I S+ V + + + ++ N S TEAG FAIR+ R+ T++DF+K
Sbjct: 7 ANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKDFLK 66
Query: 486 AVRKV-SDNKKLESKLDY 502
AV KV S KK S Y
Sbjct: 67 AVDKVISGYKKFSSTSRY 84
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 377 PNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSERE 436
PNE+ARL + IH+ + I+ + +L +GA+++ VCTEAG++A+R R
Sbjct: 11 PNEEARLD---ILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV 67
Query: 437 YVTQEDFMKAVRKV 450
+VTQEDF AV KV
Sbjct: 68 HVTQEDFEMAVAKV 81
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 375 PLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434
P PNE+ARL + IH+ I+ + +L +GA+++ VCTEAG +A+R
Sbjct: 1 PPPNEEARLD---ILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRER 57
Query: 435 REYVTQEDFMKAVRKV 450
R +VTQEDF AV KV
Sbjct: 58 RVHVTQEDFEXAVAKV 73
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 659 PLPNEQARLEILKIHA 674
P PNE+ARL+ILKIH+
Sbjct: 1 PPPNEEARLDILKIHS 16
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 68 VREQLKELTKQYDKSENDLKALQS----VGQVSLSTSVSKCWTVIVKATNGPRYVVGCRR 123
+ ++++EL + EN++ L+S VG VS + + V+VK++ GP++VV +
Sbjct: 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVS---DILEDGRVVVKSSTGPKFVVNTSQ 68
Query: 124 QLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHED 164
+++ +LK G RVAL+ TL I+ LP DP+VY E+
Sbjct: 69 YINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 19/152 (12%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ESARLIREMFNYARN 581
PK L+ GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 582 -----HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK---- 631
Q I+F+DEID I + G RE +QR L+ L+ G VK
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 632 MIMATN-----RPDTLDPALLRPGRLDRKIEI 658
+ +A+ RP L P L GRL ++E+
Sbjct: 170 LFIASGAFQVARPSDLIPEL--QGRLPIRVEL 199
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 52/186 (27%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHL 264
PK L+ GP G GKT +AR +A +A F+KV ++ F
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV-------------------- 89
Query: 265 EKTYFPFYSSAIVDKYIG-ESARLIREMFNYARN-----HQPCIIFMDEIDAIGGRRFSE 318
Y+G E +IR++ + A Q I+F+DEID I +
Sbjct: 90 --------------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS 135
Query: 319 GTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMATN-----RPDTLDPALLRPGRL 368
G RE +QR L+ L+ G VK + +A+ RP L P L GRL
Sbjct: 136 GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPEL--QGRL 193
Query: 369 DRKIEI 374
++E+
Sbjct: 194 PIRVEL 199
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 68 VREQLKELTKQYDKSENDLKALQS----VGQVSLSTSVSKCWTVIVKATNGPRYVVGCRR 123
+ ++++EL + EN++ L+S VG VS + + V+VK++ GP++VV +
Sbjct: 12 LEDKVEELLSKNYHLENEVARLRSAPLLVGVVS---DILEDGRVVVKSSTGPKFVVNTSQ 68
Query: 124 QLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHED 164
+++ +LK G RVAL+ TL I+ LP DP+VY E+
Sbjct: 69 YINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 204 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLK------ 257
P + LL+GPPG GKT LA +A +L N L+V S + D+A ++ N L+
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSLEEGDILF 95
Query: 258 ----RRSTHHLEKTYFPFYSSAIVDKYIGE--SARLIR 289
R + E+ +P ++D IG+ +AR IR
Sbjct: 96 IDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
P + LL+GPPG GKT LA +A +L N L+V S ++K G+ A ++
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLE----- 89
Query: 583 QPCIIFMDEI 592
+ I+F+DEI
Sbjct: 90 EGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 204 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLK------ 257
P + LL+GPPG GKT LA +A +L N L+V S + D+A ++ N L+
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSLEEGDILF 95
Query: 258 ----RRSTHHLEKTYFPFYSSAIVDKYIGE--SARLIR 289
R + E+ +P ++D IG+ +AR IR
Sbjct: 96 IDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
P + LL+GPPG GKT LA +A +L N L+V S ++K G+ A ++
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLE----- 89
Query: 583 QPCIIFMDEI 592
+ I+F+DEI
Sbjct: 90 EGDILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 204 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLK------ 257
P + LL+GPPG GKT LA +A +L N L+V S + D+A ++ N L+
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSLEEGDILF 95
Query: 258 ----RRSTHHLEKTYFPFYSSAIVDKYIGE--SARLIR 289
R + E+ +P ++D IG+ +AR IR
Sbjct: 96 IDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
P + LL+GPPG GKT LA +A +L N L+V S ++K G+ A ++
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLE----- 89
Query: 583 QPCIIFMDEI 592
+ I+F+DEI
Sbjct: 90 EGDILFIDEI 99
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK-YIGESA-----RLIREMFNYARN 581
LL GP G+GKTL+A+ +A LD ++++ + Y+GE RL++ +
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK 135
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADREI 610
Q I+F+DEID I R SE S R++
Sbjct: 136 AQKGIVFIDEIDKIS--RLSENRSITRDV 162
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 41/123 (33%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
LL GP G+GKTL+A+ +A LD +AI L
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDI---------------PIAISDATSLTEAG-------- 112
Query: 269 FPFYSSAIVDKYIGESA-----RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323
Y+GE RL++ + Q I+F+DEID I R SE S
Sbjct: 113 -----------YVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS--RLSENRSIT 159
Query: 324 REI 326
R++
Sbjct: 160 RDV 162
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDH 458
E+D E V D +GAD+ ++C E+G+ A+R R V +DF KA + V + +H
Sbjct: 22 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 79
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK-YIGESA-----RLIREMFNYARN 581
LL GP G+GKTLLA +A LD F ++ + + Y+GE +L+++ +
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 114
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-----IQRTLMELL 618
Q I+++D+ID I R S+ S R+ +Q+ L++L+
Sbjct: 115 AQRGIVYIDQIDKI--SRKSDNPSITRDVSGEGVQQALLKLI 154
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANF 233
LL GP G+GKTLLA +A LD F
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK-YIGESA-----RLIREMFNYARN 581
LL GP G+GKTLLA +A LD F ++ + + Y+GE +L+++ +
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 114
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-----IQRTLMELL 618
Q I+++D+ID I R S+ S R+ +Q+ L++L+
Sbjct: 115 AQRGIVYIDQIDKI--SRKSDNPSITRDVSGEGVQQALLKLI 154
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANF 233
LL GP G+GKTLLA +A LD F
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPF 79
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG GKT LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG GKT LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG GKT LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG GKT LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG GKT LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG GKT LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG GKT LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG GKT LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG GKT LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG GKT LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA----RNHQP 584
++G G GK+ V ++ N + + + + GE A+LIR+ + A R
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 585 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 634
C +F++++DA GR ++ T ++ + TLM + + Q+ G +V +I+
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160
Query: 635 ATNRPDTLDPALLRPGRLDRKIEIP 659
N TL L+R GR+++ P
Sbjct: 161 TGNDFSTLYAPLIRDGRMEKFYWAP 185
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 23/152 (15%)
Query: 282 GESARLIREMFNYA----RNHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN 335
GE A+LIR+ + A R C +F++++DA GR ++ T ++ + TLM + +
Sbjct: 78 GEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137
Query: 336 -----QMDGF---DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTW 387
Q+ G +V +I+ N TL L+R GR+++ P ++
Sbjct: 138 NPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR------- 190
Query: 388 PISIHAGPIAKHGEIDYEAVVKLSDSFNGADL 419
I + G I + + E VVK+ D+F G +
Sbjct: 191 -IGVCTG-IFRTDNVPAEDVVKIVDNFPGQSI 220
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-----GNQLKRRSTH 262
LL GPPG G+T LA +AS+L N + V S + + DMA ++ G+ L H
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIH 112
Query: 263 HLEKTYFPFYSSAIVDKYI------GESARLIR 289
L K SAI D I G SA+ IR
Sbjct: 113 RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIR 145
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
LL GPPG G+T LA +AS+L N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 587 IFMDEI 592
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK---------YIGESARLIREMFNYA 579
L GPPG GKT LA+++A L F+++ + D+ Y+G I + A
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA 172
Query: 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREI----QRTLMELLNQMDGFDSLGQVKMIMA 635
P + +DEID + + +SA E+ Q + + FD L +V I
Sbjct: 173 GKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD-LSKVLFIAT 230
Query: 636 TNRPDTLDPALLRPGRLDRK--IEIPLPNEQARLEILKIHAGP--IAKHG 681
N T+ P LR DR I I E +LEI+K H P I +HG
Sbjct: 231 ANNLATI-PGPLR----DRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHG 275
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKV 236
L GPPG GKT LA+++A L F+++
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ES 568
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ + Y+G E
Sbjct: 40 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 96
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
+IR++ + A + M + AI R+ A+ I L+ ++ G
Sbjct: 97 DSIIRDLTDAA-------VKMVRVQAIEKNRYRAEELAEERILDVLIP-----PAKNNWG 144
Query: 629 QVKMIMATNRPDTLDPAL---LRPGRLDRK-IEIPLPNEQARLEIL 670
Q + P A LR G+LD K IEI L +EI+
Sbjct: 145 QTEQ---QQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIM 187
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 192 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ F
Sbjct: 40 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 298 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 352
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 248 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 307
Query: 353 NRPDTLDPALLRP---GRLDRKIEI 374
P+ L P GRL ++E+
Sbjct: 308 GAFQIAKPSDLIPELQGRLPIRVEL 332
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 636
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 248 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 307
Query: 637 NRPDTLDPALLRP---GRLDRKIEI 658
P+ L P GRL ++E+
Sbjct: 308 GAFQIAKPSDLIPELQGRLPIRVEL 332
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIG--ESARL--IREMFN 577
TP LL GPP +GKT LA +A + + F+K+ S DK IG E+A+ ++++F+
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 117
Query: 578 YARNHQPCIIFMDEIDAI-----GGRRFS 601
A Q + +D+I+ + G RFS
Sbjct: 118 DAYKSQLSCVVVDDIERLLDYVPIGPRFS 146
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 203 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 238
TP LL GPP +GKT LA +A + + F+K+ S
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 96
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ES 568
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ + Y+G E
Sbjct: 39 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 95
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
+IR++ + A + M + AI R+ A+ I L+ ++ G
Sbjct: 96 DSIIRDLTDAA-------VKMVRVQAIEKNRYRAEELAEERILDVLIP-----PAKNNWG 143
Query: 629 QVKMIMATNRPDTLDPAL---LRPGRLDRK-IEIPLPNEQARLEIL 670
Q + P A LR G+LD K IEI L +EI+
Sbjct: 144 QTEQ---QQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIM 186
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 192 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ F
Sbjct: 39 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 85
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 298 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 352
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 247 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 306
Query: 353 NRPDTLDPALLRP---GRLDRKIEI 374
P+ L P GRL ++E+
Sbjct: 307 GAFQIAKPSDLIPELQGRLPIRVEL 331
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 636
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 247 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 306
Query: 637 NRPDTLDPALLRP---GRLDRKIEI 658
P+ L P GRL ++E+
Sbjct: 307 GAFQIAKPSDLIPELQGRLPIRVEL 331
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ES 568
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ + Y+G E
Sbjct: 46 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 102
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
+IR++ + A + M + AI R+ A+ I L+ ++ G
Sbjct: 103 DSIIRDLTDAA-------VKMVRVQAIEKNRYRAEELAEERILDVLIP-----PAKNNWG 150
Query: 629 QVKMIMATNRPDTLDPAL---LRPGRLDRK-IEIPLPNEQARLEIL 670
Q + P A LR G+LD K IEI L +EI+
Sbjct: 151 QTEQ---QQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIM 193
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 192 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
LN EL V PK L+ GP G GKT +AR +A +A F+KV ++ F
Sbjct: 46 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 92
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 298 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 352
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 254 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 313
Query: 353 NRPDTLDPALLRP---GRLDRKIEI 374
P+ L P GRL ++E+
Sbjct: 314 GAFQIAKPSDLIPELQGRLPIRVEL 338
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 636
Q I+F+DEID I R S G RE +QR L+ L+ G VK + +A+
Sbjct: 254 EQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIAS 313
Query: 637 NRPDTLDPALLRP---GRLDRKIEI 658
P+ L P GRL ++E+
Sbjct: 314 GAFQIAKPSDLIPELQGRLPIRVEL 338
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIG--ESARL--IREMFN 577
TP LL GPP +GKT LA +A + + F+K+ S DK IG E+A+ ++++F+
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 118
Query: 578 YARNHQPCIIFMDEIDAI-----GGRRFS 601
A Q + +D+I+ + G RFS
Sbjct: 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFS 147
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 203 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 238
TP LL GPP +GKT LA +A + + F+K+ S
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
+L+GPPGTGKT LA +A +A+ ++ + K I E+ R+ N R I+
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TIL 110
Query: 588 FMDEI 592
F+DE+
Sbjct: 111 FVDEV 115
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
+L+GPPGTGKT LA +A +A+ ++
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERI 81
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ESARLIREMFNYA 579
PK L+ GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
PK L+ GP G GKT +AR +A +A F+KV ++ F
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIG-ESARLIREMFNYA 579
PK L GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ + A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
PK L GP G GKT +AR +A +A F+KV ++ F
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVK----MIMAT 636
Q I+F+DEID I + G RE +QR L+ L+ G VK + +A+
Sbjct: 249 EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHILFIAS 308
Query: 637 N-----RPDTLDPALLRPGRLDRKIEI 658
RP L P L GRL ++E+
Sbjct: 309 GAFQVARPSDLIPEL--QGRLPIRVEL 333
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 206 KGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSS-LFVTSKEDMAILMGN 254
+ LL GPPGTGKT LA A+A +L + F +V S ++ T + +LM N
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 525 KGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAIVDKYIGESARLIREMFNYAR 580
+ LL GPPGTGKT LA A+A +L + F +V S + I ++ L M N+ R
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVL---MENFRR 118
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI----GESARLIREMFNYAR 580
+ +LYGPPG GKT A VA +L + L+ +S + K + ++A + Y +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 581 --------NHQPCIIFMDEIDAI-GGRRFSEGTSAD--REIQRTLMELLNQ-----MDGF 624
N + +I MDE+D + GG R G A R+ L+ + N+ M F
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPF 197
Query: 625 DSLGQVKMIMATNRPD 640
D +V + + RPD
Sbjct: 198 D---RVCLDIQFRRPD 210
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 34/159 (21%)
Query: 206 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLE 265
+ +LYGPPG GKT A VA +L + L+ +S V SK + + N L S
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS-DVRSKTLLNAGVKNALDNMSV---- 132
Query: 266 KTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI-GGRRFSEGTSAD- 323
YF K+ E+ L N + +I MDE+D + GG R G A
Sbjct: 133 VGYF---------KHNEEAQNL---------NGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174
Query: 324 -REIQRTLMELLNQ-----MDGFDSLGQVKMIMATNRPD 356
R+ L+ + N+ M FD +V + + RPD
Sbjct: 175 CRKTSTPLILICNERNLPKMRPFD---RVCLDIQFRRPD 210
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 178 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 237
+QIR++ ++ PL E P +YG GTGKT + + V S+L FL
Sbjct: 27 DQIRKIASILA-PLYREE--------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKF 77
Query: 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEK--TYFPFYSSAIVDKYIGESARLIREMFNYA 295
+++ +++ + R LE PF +I + Y RL++ + +Y
Sbjct: 78 KHVYINTRQ------IDTPYRVLADLLESLDVKVPFTGLSIAELY----RRLVKAVRDYG 127
Query: 296 RNHQPCIIFMDEIDA 310
+I +DEIDA
Sbjct: 128 ---SQVVIVLDEIDA 139
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK-------------------- 563
P +YG GTGKT + + V S+L FL ++
Sbjct: 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK 104
Query: 564 --YIGES-ARLIREMFNYARNH-QPCIIFMDEIDA 594
+ G S A L R + R++ +I +DEIDA
Sbjct: 105 VPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 107 VIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLP 150
V+VK++ GP ++V ++ L G RV L+ TLT++ LP
Sbjct: 33 VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 525 KGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAIVDKYIGESARLIREMFNYA 579
+ LL GPPGTGKT LA A+A +L + F V S + I + ++ E F A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEI-KKTEVLXENFRRA 133
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 206 KGCLLYGPPGTGKTLLARAVASQLDA 231
+ LL GPPGTGKT LA A+A +L +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 471 IRSEREYVTQEDFMKAVRKVSDN----KKLESKLDYKPVIELPLLNPELFQRVGITPPKG 526
+R+E + ++ ++KA K++ K + + +Y+ + + +N GI P K
Sbjct: 69 LRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGI-PKKN 127
Query: 527 CLLY-GPPGTGKTLLARAVASQLDANFLKVVS 557
CL + GPP TGK++L ++ L + L +
Sbjct: 128 CLAFIGPPNTGKSMLCNSLIHFLGGSVLSFAN 159
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 471 IRSEREYVTQEDFMKAVRKVSDN----KKLESKLDYKPVIELPLLNPELFQRVGITPPKG 526
+R+E + ++ ++KA K++ K + + +Y+ + + +N GI P K
Sbjct: 66 LRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGI-PKKN 124
Query: 527 CLLY-GPPGTGKTLLARAVASQLDANFLKVVS 557
CL + GPP TGK++L ++ L + L +
Sbjct: 125 CLAFIGPPNTGKSMLCNSLIHFLGGSVLSFAN 156
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFL-------KVVSSAIVDKYIGESARLIREMFNYAR 580
+L G PG GKT +A +A Q+ N + +V++ + KY GE ++++ + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 581 NHQPCIIFMD-EIDA 594
I+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 520 GITPPK---GCLLY-GPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLI 572
G+ PK G ++ GP G GKT LARA+A + + + +++ S ++K+ +L
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 573 REMFNYARNHQPCIIFMDEID 593
++ R ++ +D I+
Sbjct: 573 EKV----RRKPYSVVLLDAIE 589
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 205 PKGC--LLYGPPGTGKTLLARAVASQLDA 231
PKG L+ G PGTGKT +A +A++LD
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDG 36
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 524 PKGC--LLYGPPGTGKTLLARAVASQLDA 550
PKG L+ G PGTGKT +A +A++LD
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDG 36
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA-VRKVSDNKKLDHC 459
E D ++++ +DS +GA + + EAGL A+R R + Q D +A +V + +D
Sbjct: 19 EADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKF 78
Query: 460 NSYR 463
+ Y+
Sbjct: 79 DFYK 82
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFL-------KVVSSAIVDKYIGESARLIREMFNYAR 580
+L G PG GKT +A +A Q+ N + +V++ + KY GE ++++ + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 581 NHQPCIIFMD-EIDA 594
I+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 517 QRVGI---TPPKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIG 566
Q++G+ TP G PGTGKT +A +A L + + V +V +YIG
Sbjct: 57 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 567 ESARLIREMFNYARNHQPCIIFMDE 591
+A +E+ A ++F+DE
Sbjct: 117 HTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI- 586
+YG GTGKT L +A ++ +V+ S+ D L + N RN +
Sbjct: 41 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVD 100
Query: 587 -IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR-PDTLDP 644
+ +D++ + G+ +RT +E + + L + ++I+A++R P LD
Sbjct: 101 LLLLDDVQFLSGK------------ERTQIEFFHIFNTL-YLLEKQIILASDRHPQKLDG 147
Query: 645 ALLR-PGRLDRKI--EIPLPNEQARLEILK 671
R R + I EI L N + R +I+K
Sbjct: 148 VSDRLVSRFEGGILVEIELDN-KTRFKIIK 176
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHL 264
P LLYG GTGKT +AR V +L+A SSL V K + N R + + +
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEAR----ASSLGVLVKP----IYVNARHRETPYRV 95
Query: 265 EKTY-------FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309
PF ++ + Y RL++ + +R II +DEID
Sbjct: 96 ASAIAEAVGVRVPFTGLSVGEVY----ERLVKRL---SRLRGIYIIVLDEID 140
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDA 550
P LLYG GTGKT +AR V +L+A
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 517 QRVGI---TPPKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIG 566
Q++G+ TP G PGTGKT +A +A L + + V +V +YIG
Sbjct: 50 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 109
Query: 567 ESARLIREMFNYARNHQPCIIFMDE 591
+A +E+ A ++F+DE
Sbjct: 110 HTAPKTKEVLKRAMG---GVLFIDE 131
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 33/121 (27%)
Query: 528 LLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
L GPPG GKT A A+A +L NFL++ +S +IRE
Sbjct: 50 LFAGPPGVGKTTAALALARELFGENWRHNFLELNASD------ERGINVIREKVKEFART 103
Query: 583 QPC------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT 636
+P IIF+DE DA+ A + ++RT M+ F S V+ I++
Sbjct: 104 KPIGGASFKIIFLDEADAL-------TQDAQQALRRT-------MEMFSS--NVRFILSC 147
Query: 637 N 637
N
Sbjct: 148 N 148
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 517 QRVGI---TPPKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIG 566
Q++G+ TP G PGTGKT +A A L + + V +V +YIG
Sbjct: 57 QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 567 ESARLIREMFNYARNHQPCIIFMDE 591
+A +E+ A ++F+DE
Sbjct: 117 HTAPKTKEVLKRAXG---GVLFIDE 138
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 209 LLYGPPGTGKTLLARAVASQL-DANFLKVVSSLFVTSKEDMAI-LMGNQLKR-RSTHHLE 265
L YGPPGTGKT A+A ++ N+ +V L + + +D I ++ NQ+K ST +
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMV--LELNASDDRGIDVVRNQIKDFASTRQIF 107
Query: 266 KTYFPFYSSAIVDKYIGESARLIREMFN-YARNHQPCII 303
F D + +R + Y +N + C++
Sbjct: 108 SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVL 146
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 33/146 (22%)
Query: 528 LLYGPPGTGKT----LLARAVASQLDANFLKVVSSA------IVDKYIGESARLIREMFN 577
L YGPPGTGKT LAR + + +N + ++++ +V I + A R++F+
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS-TRQIFS 108
Query: 578 YARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 637
+I +DE DA+ T+A + R ++E + F L N
Sbjct: 109 KGFK----LIILDEADAM--------TNAAQNALRRVIERYTKNTRFCVLA--------N 148
Query: 638 RPDTLDPALLRPGRLDRKIEIPLPNE 663
L PALL + R PLP E
Sbjct: 149 YAHKLTPALL--SQCTRFRFQPLPQE 172
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 528 LLYGPPGTGKTLLARAVASQL------DANFLKVVSS-----AIVDKYIGESARL-IREM 575
L YGPPGTGKT A+ +L + L++ +S +IV + + ARL + +
Sbjct: 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 121
Query: 576 FNYARNHQPC----IIFMDEIDAI 595
+ + PC II +DE D++
Sbjct: 122 SKHDLENYPCPPYKIIILDEADSM 145
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQ---------LKRR 259
L YGPPGTGKT A+ +L L L + + ++ I + + + +
Sbjct: 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 121
Query: 260 STHHLEKTYFPFYSSAIVDKYIGESA----RLIREMFNYARNHQPCII 303
S H LE P Y I+D+ +A L R M Y+ + C+I
Sbjct: 122 SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI 169
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 505 VIELPLLNPELFQRVGITPPK--GCLLYGPPGTGKTLLARAVAS-QLDANFLKVVSSAIV 561
V+ L+ P ++Q V K CL+ P G GKTL+A +A +L KV+ A
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61
Query: 562 DKYIGESARLIREMFN 577
+ + A R +FN
Sbjct: 62 KPLVLQHAESFRRLFN 77
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 186 VIELPLLNPELFQRVGITPPK--GCLLYGPPGTGKTLLARAVA 226
V+ L+ P ++Q V K CL+ P G GKTL+A +A
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIA 44
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 516 FQRVGITPPKGCLLYG---PPGTGKTLLARAVASQLDANF----LKVVSSAIVDKYIGES 568
F+ G+ PK + G G GKT + + +A ++ NF KV ++ ++ G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRG-- 71
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
+E++NY + ++ +E+ + ++ E A + ++ T+ E+L ++D
Sbjct: 72 ----KEIYNYFKE-----LYSNELKIVHKIQYVE--YASKFLKGTVNEILTKIDERGKKD 120
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDR 654
+VK ++ D +L G L R
Sbjct: 121 EVKELLNMTNLWNKDANILSGGGLQR 146
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E AE+E R+ ++R+Q++E T YD+
Sbjct: 338 EKAEIEARVSQIRQQIEETTSDYDR 362
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 528 LLYGPPGTGKTLLARAVASQLDA-----NFLKVVSS-----AIVDKYIGESARLIREMFN 577
L GPPGTGKT A A+A L NF+++ +S +V I E AR
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR------T 95
Query: 578 YARNHQPC-IIFMDEIDAI 595
P IIF+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 508 LPLLNPELFQRV---GITPPKGCLLYGP-PGTGKTLLARAVASQLDANFLKVVSS 558
LP + E F+ + G P +L+ P PGTGKT +A+A+ ++A+ + V S
Sbjct: 30 LPAFDKETFKSITSKGKIPH--IILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 528 LLYGPPGTGKTLLARAVASQLDA-----NFLKVVSS-----AIVDKYIGESARLIREMFN 577
L GPPGTGKT A A+A L NF+++ +S +V I E AR
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR------T 95
Query: 578 YARNHQPC-IIFMDEIDAI 595
P IIF+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
+YG GTGKT L +A ++ +V+ S S +D A M LK+ + + Y
Sbjct: 41 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS----SADDFAQAMVEHLKKGTINEFRNMY 96
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
+YG GTGKT L +A ++ +V+ S S +D A M LK+ + + Y
Sbjct: 40 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS----SADDFAQAMVEHLKKGTINEFRNMY 95
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 338 EEAAIQGRVAQIRQQIEEATSDYDR 362
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 338 EEAAIQGRVAQIRQQIEEATSDYDR 362
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 338 EEAAIQGRVAQIRQQIEEATSDYDR 362
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDR 361
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 195 ELFQ-RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241
EL Q + + P LL G PG+GKT L A+ + N + + + F
Sbjct: 22 ELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69
>pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
Subunit A (Grla) From Staphylococcus Aureus
Length = 514
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 14 LQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLK 73
LQ YR T+ +EG +E+ +K+L D HD LL+ ++E+L
Sbjct: 446 LQLYRLTNTDIVALEGEHKELEALIKQLRHILD-------------NHDALLNVIKEELN 492
Query: 74 ELTKQYDKSE 83
E+ K++ KSE
Sbjct: 493 EIKKKF-KSE 501
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
L GP G GKT LA ++ + AN +K ++ ++K G+ A ++ + + I+
Sbjct: 59 LFSGPAGLGKTTLANIISYEXSAN-IKTTAAPXIEKS-GDLAAILTNL------SEGDIL 110
Query: 588 FMDEI 592
F+DEI
Sbjct: 111 FIDEI 115
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGN 254
L GP G GKT LA ++ + AN +K ++ + D+A ++ N
Sbjct: 59 LFSGPAGLGKTTLANIISYEXSAN-IKTTAAPXIEKSGDLAAILTN 103
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 39/249 (15%)
Query: 12 KTLQDYRK-KLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVRE 70
++LQ + + + +H++ + QL LT Q S + Q++G L ++E
Sbjct: 424 ESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWST---QVDQALGGGTLQQSKIQE 480
Query: 71 QLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKL 130
QL+ + + N+L SV Q LS K + ++ R VV RQL K K
Sbjct: 481 QLQSIEQTTQMILNNLA--DSVLQ-DLSAQKRKKFEHLITELVHQRDVV---RQLQKCKN 534
Query: 131 KSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 190
+G + D L MRY D N+ H+ + + E + +++ P
Sbjct: 535 LTGNK---DFDWLYHMRYY---YDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTP 588
Query: 191 L-------LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---------DANF- 233
L L L R+G P +GP GTGKT +A+ SQL D F
Sbjct: 589 LTDRCYLTLTQALESRMGGNP------FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD 642
Query: 234 LKVVSSLFV 242
L+ +S +FV
Sbjct: 643 LQAMSRIFV 651
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 39/249 (15%)
Query: 12 KTLQDYRK-KLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVRE 70
++LQ + + + +H++ + QL LT Q S + Q++G L ++E
Sbjct: 424 ESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWST---QVDQALGGGTLQQSKIQE 480
Query: 71 QLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKL 130
QL+ + + N+L SV Q LS K + ++ R VV RQL K K
Sbjct: 481 QLQSIEQTTQMILNNLA--DSVLQ-DLSAQKRKKFEHLITELVHQRDVV---RQLQKCKN 534
Query: 131 KSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELP 190
+G + D L MRY D N+ H+ + + E + +++ P
Sbjct: 535 LTGNK---DFDWLYHMRYY---YDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTP 588
Query: 191 L-------LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---------DANF- 233
L L L R+G P +GP GTGKT +A+ SQL D F
Sbjct: 589 LTDRCYLTLTQALESRMGGNP------FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD 642
Query: 234 LKVVSSLFV 242
L+ +S +FV
Sbjct: 643 LQAMSRIFV 651
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 151 EEAAIQGRVAQIRQQIEEATSDYDR 175
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 165 EEAAIQGRVAQIRQQIEEATSDYDR 189
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 155 EEAAIQGRVAQIRQQIEEATSDYDR 179
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 155 EEAAIQGRVAQIRQQIEEATSDYDR 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,235,543
Number of Sequences: 62578
Number of extensions: 884469
Number of successful extensions: 3422
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 345
length of query: 741
length of database: 14,973,337
effective HSP length: 106
effective length of query: 635
effective length of database: 8,340,069
effective search space: 5295943815
effective search space used: 5295943815
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)