Query psy11254
Match_columns 741
No_of_seqs 706 out of 5169
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:06:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2.2E-86 4.8E-91 708.0 38.0 491 166-701 185-723 (802)
2 KOG0730|consensus 100.0 8.4E-77 1.8E-81 645.5 35.2 492 166-731 180-674 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 3.8E-72 8.3E-77 570.3 36.8 371 12-453 23-395 (406)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-63 2.3E-68 590.7 46.2 502 165-731 172-710 (733)
5 KOG0728|consensus 100.0 9.3E-60 2E-64 455.1 30.0 370 12-452 17-390 (404)
6 KOG0726|consensus 100.0 5.5E-59 1.2E-63 458.6 24.8 374 9-453 55-429 (440)
7 KOG0727|consensus 100.0 2.8E-58 6.1E-63 445.3 27.7 348 34-452 51-398 (408)
8 KOG0736|consensus 100.0 4.3E-57 9.3E-62 494.7 32.2 444 202-712 428-896 (953)
9 KOG0651|consensus 100.0 5.8E-58 1.3E-62 456.4 19.8 378 7-456 2-379 (388)
10 KOG0735|consensus 100.0 5E-55 1.1E-59 473.9 35.8 447 208-716 434-894 (952)
11 KOG0652|consensus 100.0 2.9E-54 6.2E-59 419.2 28.0 368 40-454 49-416 (424)
12 KOG0729|consensus 100.0 5.6E-52 1.2E-56 404.3 26.0 301 115-453 121-421 (435)
13 COG0464 SpoVK ATPases of the A 100.0 1.6E-50 3.5E-55 460.0 41.3 472 189-730 2-482 (494)
14 PTZ00454 26S protease regulato 100.0 1.1E-49 2.5E-54 433.9 38.9 371 11-452 17-388 (398)
15 PTZ00361 26 proteosome regulat 100.0 1.5E-48 3.2E-53 427.1 35.6 372 10-452 54-426 (438)
16 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-48 3.8E-53 397.4 20.1 232 501-732 162-393 (406)
17 PRK03992 proteasome-activating 100.0 1.2E-44 2.6E-49 397.0 38.9 362 22-454 15-376 (389)
18 KOG0730|consensus 100.0 1.2E-45 2.6E-50 402.4 21.6 251 161-452 424-676 (693)
19 TIGR01242 26Sp45 26S proteasom 100.0 2.4E-43 5.1E-48 385.5 35.7 358 22-450 6-363 (364)
20 KOG0733|consensus 100.0 3.5E-44 7.6E-49 384.5 23.1 236 158-434 498-737 (802)
21 KOG0741|consensus 100.0 2.5E-42 5.5E-47 364.4 28.0 432 165-672 213-684 (744)
22 KOG0736|consensus 100.0 2.1E-40 4.6E-45 363.8 22.1 234 161-434 662-899 (953)
23 KOG0734|consensus 100.0 5.7E-40 1.2E-44 346.9 18.7 247 164-452 297-543 (752)
24 KOG0728|consensus 100.0 7.8E-40 1.7E-44 316.9 17.3 232 501-732 158-389 (404)
25 COG0466 Lon ATP-dependent Lon 100.0 3.8E-41 8.3E-46 370.2 3.4 356 16-442 179-557 (782)
26 KOG0738|consensus 100.0 3.2E-38 6.9E-43 323.6 20.4 237 164-443 205-445 (491)
27 KOG0727|consensus 100.0 1.1E-38 2.3E-43 309.3 16.1 229 500-728 165-393 (408)
28 KOG0729|consensus 100.0 1.3E-38 2.8E-43 310.9 13.7 226 503-728 190-415 (435)
29 KOG0726|consensus 100.0 1.6E-38 3.5E-43 313.9 13.0 232 501-732 196-427 (440)
30 KOG0731|consensus 100.0 1.5E-37 3.3E-42 349.6 22.0 252 163-453 303-556 (774)
31 TIGR03689 pup_AAA proteasome A 100.0 1.4E-35 3E-40 328.8 32.5 360 24-427 10-407 (512)
32 KOG0734|consensus 100.0 2.1E-37 4.5E-42 327.6 16.8 220 510-732 323-542 (752)
33 KOG0735|consensus 100.0 6.6E-37 1.4E-41 333.2 20.7 230 163-433 659-888 (952)
34 KOG2004|consensus 100.0 1.1E-38 2.4E-43 347.8 6.1 367 15-444 265-647 (906)
35 COG0465 HflB ATP-dependent Zn 100.0 1.7E-35 3.7E-40 328.4 20.4 252 164-454 143-394 (596)
36 KOG0652|consensus 100.0 1.1E-35 2.3E-40 289.7 15.9 227 503-729 184-410 (424)
37 KOG0651|consensus 100.0 1.9E-36 4.1E-41 302.7 10.5 198 502-699 144-341 (388)
38 CHL00195 ycf46 Ycf46; Provisio 100.0 9.6E-33 2.1E-37 307.0 33.1 378 299-732 81-464 (489)
39 KOG0739|consensus 100.0 4.6E-35 1E-39 290.3 12.9 227 163-433 125-353 (439)
40 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-33 2.5E-38 335.0 25.1 231 164-434 446-676 (733)
41 COG0464 SpoVK ATPases of the A 100.0 9.8E-34 2.1E-38 322.4 22.6 249 163-452 234-485 (494)
42 KOG0732|consensus 100.0 5.8E-34 1.3E-38 328.1 20.6 391 166-599 260-669 (1080)
43 KOG0731|consensus 100.0 9.9E-34 2.1E-38 318.9 18.7 221 509-729 329-551 (774)
44 KOG0737|consensus 100.0 1.8E-33 4E-38 289.5 17.3 225 166-434 87-315 (386)
45 PTZ00454 26S protease regulato 100.0 7.7E-33 1.7E-37 301.9 20.2 231 502-732 157-387 (398)
46 TIGR01241 FtsH_fam ATP-depende 100.0 1.6E-32 3.6E-37 311.3 23.1 251 163-452 47-297 (495)
47 KOG0738|consensus 100.0 1.5E-33 3.2E-38 289.4 12.3 222 500-726 222-447 (491)
48 COG1223 Predicted ATPase (AAA+ 100.0 7E-33 1.5E-37 270.4 16.3 244 161-450 111-355 (368)
49 KOG0739|consensus 100.0 9.1E-34 2E-38 281.2 7.8 219 498-727 141-363 (439)
50 COG0465 HflB ATP-dependent Zn 100.0 2.4E-32 5.2E-37 303.4 17.8 224 509-732 168-391 (596)
51 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-31 3.5E-36 297.3 23.3 243 165-453 222-466 (489)
52 CHL00176 ftsH cell division pr 100.0 2E-31 4.3E-36 305.4 21.7 249 165-452 177-425 (638)
53 PRK03992 proteasome-activating 100.0 2E-31 4.3E-36 292.5 20.3 230 502-731 143-372 (389)
54 PTZ00361 26 proteosome regulat 100.0 1.4E-31 3E-36 293.5 18.0 230 503-732 196-425 (438)
55 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-31 3.1E-36 261.2 14.2 212 511-729 141-353 (368)
56 PRK11034 clpA ATP-dependent Cl 100.0 1.4E-30 3.1E-35 303.2 25.0 420 168-677 183-669 (758)
57 TIGR02639 ClpA ATP-dependent C 100.0 4.5E-30 9.8E-35 303.3 27.3 442 168-712 179-708 (731)
58 TIGR03689 pup_AAA proteasome A 100.0 1.8E-30 3.9E-35 288.1 18.9 171 504-676 196-380 (512)
59 PLN00020 ribulose bisphosphate 100.0 2.1E-30 4.5E-35 269.9 17.9 156 518-677 142-314 (413)
60 COG0488 Uup ATPase components 100.0 1.9E-30 4E-35 290.6 18.8 164 186-369 8-224 (530)
61 PRK10733 hflB ATP-dependent me 100.0 1.5E-29 3.3E-34 293.4 23.1 248 166-452 147-394 (644)
62 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-29 4.2E-34 286.3 20.0 223 510-732 74-296 (495)
63 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-29 2.8E-34 302.9 19.3 250 192-452 1617-1879(2281)
64 TIGR01242 26Sp45 26S proteasom 100.0 3.4E-29 7.4E-34 273.9 19.6 228 504-731 136-363 (364)
65 KOG0741|consensus 100.0 3.3E-30 7.2E-35 272.9 8.0 205 508-714 240-457 (744)
66 CHL00206 ycf2 Ycf2; Provisiona 100.0 1E-28 2.3E-33 295.2 19.9 218 506-732 1612-1878(2281)
67 KOG0740|consensus 100.0 3.1E-29 6.7E-34 268.0 13.7 233 161-436 143-377 (428)
68 CHL00176 ftsH cell division pr 100.0 2.4E-28 5.3E-33 280.0 19.4 222 510-731 202-423 (638)
69 TIGR00763 lon ATP-dependent pr 100.0 1.8E-30 3.8E-35 308.2 0.8 301 15-385 175-500 (775)
70 PRK10787 DNA-binding ATP-depen 100.0 5.4E-29 1.2E-33 292.3 11.9 299 16-385 178-501 (784)
71 KOG0737|consensus 100.0 2.4E-28 5.3E-33 251.8 14.9 229 501-734 103-362 (386)
72 PRK10733 hflB ATP-dependent me 100.0 1.7E-27 3.8E-32 276.3 20.9 218 512-729 173-390 (644)
73 CHL00095 clpC Clp protease ATP 100.0 7.5E-27 1.6E-31 278.9 25.0 432 167-677 175-735 (821)
74 TIGR03345 VI_ClpV1 type VI sec 99.9 2.6E-26 5.7E-31 272.7 28.4 474 167-710 183-825 (852)
75 COG0542 clpA ATP-binding subun 99.9 7.5E-27 1.6E-31 265.7 21.4 483 165-714 164-753 (786)
76 PLN00020 ribulose bisphosphate 99.9 1.3E-26 2.9E-31 241.5 17.6 214 169-427 113-348 (413)
77 KOG0732|consensus 99.9 4.1E-27 8.9E-32 271.8 11.3 188 500-692 275-467 (1080)
78 PRK10865 protein disaggregatio 99.9 1.1E-24 2.5E-29 259.7 29.6 477 168-713 175-826 (857)
79 TIGR03346 chaperone_ClpB ATP-d 99.9 1.5E-24 3.3E-29 259.8 29.9 441 168-677 170-779 (852)
80 PRK10636 putative ABC transpor 99.9 2.7E-26 5.9E-31 267.6 13.7 159 187-364 7-215 (638)
81 KOG0740|consensus 99.9 2.4E-26 5.2E-31 245.9 11.0 200 500-707 163-367 (428)
82 PRK11147 ABC transporter ATPas 99.9 1.1E-24 2.5E-29 254.6 16.5 157 187-364 9-222 (635)
83 KOG0062|consensus 99.9 8.2E-24 1.8E-28 225.6 15.2 161 184-364 83-264 (582)
84 KOG0927|consensus 99.9 5E-24 1.1E-28 228.5 13.4 165 186-368 80-292 (614)
85 PRK15064 ABC transporter ATP-b 99.9 5.3E-23 1.2E-27 236.4 17.7 159 187-364 7-221 (530)
86 PRK11819 putative ABC transpor 99.9 1.2E-22 2.5E-27 234.5 17.4 157 187-363 12-228 (556)
87 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.8E-22 3.9E-27 232.9 18.0 157 187-363 10-226 (552)
88 PRK10938 putative molybdenum t 99.9 7.2E-23 1.6E-27 233.3 13.6 161 187-363 9-203 (490)
89 PRK10982 galactose/methyl gala 99.9 1.9E-22 4.2E-27 229.7 15.4 160 187-362 4-201 (491)
90 PLN03073 ABC transporter F fam 99.9 2E-22 4.2E-27 236.1 14.8 161 185-364 181-410 (718)
91 PRK10762 D-ribose transporter 99.9 5E-22 1.1E-26 226.8 15.5 160 187-362 10-208 (501)
92 PRK11288 araG L-arabinose tran 99.9 6.7E-22 1.5E-26 225.7 14.7 159 188-362 11-207 (501)
93 PRK15439 autoinducer 2 ABC tra 99.9 6.6E-22 1.4E-26 226.1 14.3 159 188-362 18-207 (510)
94 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-21 2.7E-26 224.7 16.0 161 187-362 6-236 (520)
95 COG1123 ATPase components of v 99.9 6.5E-22 1.4E-26 217.6 12.6 155 195-364 23-224 (539)
96 PRK13409 putative ATPase RIL; 99.9 1.5E-21 3.2E-26 224.7 15.1 159 185-361 77-277 (590)
97 PRK13549 xylose transporter AT 99.9 1.6E-21 3.5E-26 222.9 14.8 160 187-362 11-210 (506)
98 TIGR02633 xylG D-xylose ABC tr 99.9 3.9E-21 8.5E-26 219.6 15.8 160 187-362 7-208 (500)
99 PF00004 AAA: ATPase family as 99.9 5E-21 1.1E-25 178.1 13.6 130 527-660 1-132 (132)
100 COG1126 GlnQ ABC-type polar am 99.9 6.9E-22 1.5E-26 190.5 6.9 167 187-369 8-210 (240)
101 PRK10261 glutathione transport 99.8 3.6E-21 7.9E-26 224.5 13.3 153 195-362 30-236 (623)
102 COG1116 TauB ABC-type nitrate/ 99.8 1.2E-21 2.5E-26 194.8 6.9 156 187-357 9-193 (248)
103 KOG0743|consensus 99.8 3.1E-21 6.7E-26 204.9 10.3 160 509-676 220-385 (457)
104 PRK15134 microcin C ABC transp 99.8 1.6E-20 3.4E-25 215.9 16.4 154 194-362 22-224 (529)
105 KOG0066|consensus 99.8 3.4E-21 7.3E-26 200.4 9.5 165 186-369 269-483 (807)
106 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 8.2E-22 1.8E-26 198.6 4.2 171 186-372 9-216 (254)
107 PRK09700 D-allose transporter 99.8 9.9E-21 2.1E-25 216.7 8.9 160 187-362 11-212 (510)
108 COG2884 FtsE Predicted ATPase 99.8 2.2E-20 4.7E-25 176.1 9.3 155 189-360 11-202 (223)
109 COG1120 FepC ABC-type cobalami 99.8 1.2E-20 2.6E-25 191.3 6.0 158 186-358 7-202 (258)
110 KOG0744|consensus 99.8 4.4E-20 9.4E-25 186.4 7.5 157 523-681 176-347 (423)
111 COG1127 Ttg2A ABC-type transpo 99.8 5.5E-20 1.2E-24 180.1 6.6 163 187-364 14-215 (263)
112 KOG0742|consensus 99.8 2.6E-19 5.6E-24 185.3 11.9 203 521-734 381-591 (630)
113 COG1125 OpuBA ABC-type proline 99.8 1.4E-19 3.1E-24 178.0 6.2 157 186-357 6-198 (309)
114 COG1118 CysA ABC-type sulfate/ 99.8 2E-19 4.3E-24 181.8 7.2 160 186-360 7-203 (345)
115 COG3842 PotA ABC-type spermidi 99.8 1E-19 2.2E-24 192.5 5.4 157 187-358 11-200 (352)
116 COG1136 SalX ABC-type antimicr 99.8 3E-19 6.5E-24 177.6 8.2 160 194-375 18-216 (226)
117 COG1131 CcmA ABC-type multidru 99.8 3E-19 6.5E-24 188.7 6.7 164 186-364 9-206 (293)
118 COG4555 NatA ABC-type Na+ tran 99.8 6.7E-19 1.5E-23 167.5 7.5 159 190-364 10-202 (245)
119 COG1124 DppF ABC-type dipeptid 99.8 3.1E-19 6.6E-24 175.9 5.1 159 196-369 22-216 (252)
120 PRK13537 nodulation ABC transp 99.7 7.3E-19 1.6E-23 187.4 6.1 165 188-368 14-211 (306)
121 PF00004 AAA: ATPase family as 99.7 8.9E-18 1.9E-22 156.2 12.6 130 208-376 1-132 (132)
122 COG4172 ABC-type uncharacteriz 99.7 2.2E-18 4.7E-23 179.2 9.2 152 193-359 22-222 (534)
123 CHL00181 cbbX CbbX; Provisiona 99.7 1.4E-17 2.9E-22 175.3 15.4 211 170-430 22-254 (287)
124 COG1135 AbcC ABC-type metal io 99.7 7.3E-19 1.6E-23 178.2 4.8 160 194-368 19-215 (339)
125 cd03235 ABC_Metallic_Cations A 99.7 1E-18 2.2E-23 177.1 5.4 160 187-362 5-199 (213)
126 cd03259 ABC_Carb_Solutes_like 99.7 1.3E-18 2.9E-23 176.2 6.2 161 187-362 6-198 (213)
127 COG1122 CbiO ABC-type cobalt t 99.7 8.5E-19 1.8E-23 177.7 4.1 155 194-363 17-207 (235)
128 TIGR01188 drrA daunorubicin re 99.7 2.5E-18 5.4E-23 183.4 7.3 157 192-364 4-193 (302)
129 COG3839 MalK ABC-type sugar tr 99.7 2.1E-18 4.6E-23 181.6 6.5 157 188-359 10-198 (338)
130 cd03226 ABC_cobalt_CbiO_domain 99.7 2.6E-18 5.6E-23 173.0 6.2 157 188-360 6-191 (205)
131 cd03301 ABC_MalK_N The N-termi 99.7 1.9E-18 4E-23 175.2 5.0 158 188-360 7-196 (213)
132 TIGR00960 3a0501s02 Type II (G 99.7 2.2E-18 4.7E-23 175.0 5.5 151 194-360 16-203 (216)
133 PRK11247 ssuB aliphatic sulfon 99.7 1.7E-18 3.7E-23 179.9 4.7 158 190-362 21-201 (257)
134 PRK13538 cytochrome c biogenes 99.7 4.6E-18 1E-22 171.0 7.6 156 189-360 9-194 (204)
135 PRK13536 nodulation factor exp 99.7 2.3E-18 5E-23 185.6 5.7 162 187-364 47-241 (340)
136 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 3.1E-18 6.8E-23 174.1 6.4 151 194-359 17-205 (218)
137 cd03293 ABC_NrtD_SsuB_transpor 99.7 2.1E-18 4.6E-23 175.6 5.1 152 194-360 17-197 (220)
138 TIGR02881 spore_V_K stage V sp 99.7 4E-17 8.7E-22 170.5 14.7 152 524-690 42-205 (261)
139 cd03265 ABC_DrrA DrrA is the A 99.7 2.3E-18 5E-23 175.4 4.9 161 188-363 7-200 (220)
140 cd03231 ABC_CcmA_heme_exporter 99.7 6E-18 1.3E-22 169.7 7.6 161 187-363 6-193 (201)
141 cd03225 ABC_cobalt_CbiO_domain 99.7 2.6E-18 5.6E-23 173.8 5.0 157 188-360 6-199 (211)
142 TIGR02673 FtsE cell division A 99.7 3.3E-18 7.2E-23 173.4 5.6 152 193-360 14-202 (214)
143 cd03261 ABC_Org_Solvent_Resist 99.7 3.2E-18 6.8E-23 176.2 5.1 160 188-362 7-204 (235)
144 CHL00181 cbbX CbbX; Provisiona 99.7 4.6E-17 1E-21 171.2 13.9 150 516-677 48-212 (287)
145 cd03219 ABC_Mj1267_LivG_branch 99.7 5.2E-18 1.1E-22 174.7 6.6 161 187-363 6-211 (236)
146 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 7.8E-18 1.7E-22 171.8 7.7 165 180-360 21-207 (224)
147 PRK11650 ugpC glycerol-3-phosp 99.7 3.3E-18 7.1E-23 185.6 5.2 154 192-360 15-200 (356)
148 TIGR03265 PhnT2 putative 2-ami 99.7 3.7E-18 8E-23 185.0 5.5 160 188-362 11-202 (353)
149 TIGR02881 spore_V_K stage V sp 99.7 1.1E-16 2.4E-21 167.1 16.5 177 169-387 4-188 (261)
150 cd03214 ABC_Iron-Siderophores_ 99.7 3.6E-18 7.8E-23 168.3 4.9 149 190-362 8-165 (180)
151 TIGR01288 nodI ATP-binding ABC 99.7 4.5E-18 9.7E-23 181.5 5.9 161 188-364 11-204 (303)
152 cd03269 ABC_putative_ATPase Th 99.7 3.7E-18 8.1E-23 172.6 4.8 156 189-360 8-193 (210)
153 COG4586 ABC-type uncharacteriz 99.7 2E-17 4.4E-22 164.4 9.5 162 193-369 36-231 (325)
154 TIGR01166 cbiO cobalt transpor 99.7 2E-17 4.3E-22 164.5 9.6 149 193-357 4-189 (190)
155 COG3638 ABC-type phosphate/pho 99.7 3.5E-18 7.5E-23 167.1 3.9 158 192-364 15-217 (258)
156 cd03296 ABC_CysA_sulfate_impor 99.7 4.5E-18 9.7E-23 175.5 4.9 158 188-360 9-202 (239)
157 COG1117 PstB ABC-type phosphat 99.7 1.1E-17 2.4E-22 160.8 7.1 156 187-359 13-212 (253)
158 PRK09536 btuD corrinoid ABC tr 99.7 5E-18 1.1E-22 186.0 5.4 162 187-364 9-208 (402)
159 KOG0743|consensus 99.7 1.1E-16 2.5E-21 170.3 15.5 175 168-385 198-378 (457)
160 PRK11248 tauB taurine transpor 99.7 5.1E-18 1.1E-22 176.5 5.2 158 189-361 9-195 (255)
161 cd03266 ABC_NatA_sodium_export 99.7 6E-18 1.3E-22 172.1 5.5 150 195-360 19-201 (218)
162 cd03262 ABC_HisP_GlnQ_permease 99.7 6E-18 1.3E-22 171.4 5.5 157 188-360 7-200 (213)
163 PRK13543 cytochrome c biogenes 99.7 1.4E-17 3E-22 168.8 8.1 160 189-364 19-206 (214)
164 TIGR02880 cbbX_cfxQ probable R 99.7 1.1E-16 2.4E-21 168.6 15.0 167 171-385 22-203 (284)
165 cd03218 ABC_YhbG The ABC trans 99.7 8.5E-18 1.8E-22 172.7 6.3 160 187-362 6-200 (232)
166 PRK11000 maltose/maltodextrin 99.7 4.7E-18 1E-22 185.5 4.6 157 189-360 11-199 (369)
167 PRK13539 cytochrome c biogenes 99.7 1.3E-17 2.8E-22 168.1 7.4 156 189-360 10-192 (207)
168 cd03292 ABC_FtsE_transporter F 99.7 7.4E-18 1.6E-22 170.9 5.6 151 194-360 14-201 (214)
169 TIGR02211 LolD_lipo_ex lipopro 99.7 1.1E-17 2.3E-22 170.6 6.8 151 194-359 18-206 (221)
170 PRK11432 fbpC ferric transport 99.7 5.9E-18 1.3E-22 183.1 5.1 156 189-359 14-201 (351)
171 cd03267 ABC_NatA_like Similar 99.7 1.9E-17 4.2E-22 170.4 8.6 165 181-360 21-219 (236)
172 PRK11629 lolD lipoprotein tran 99.7 1.1E-17 2.4E-22 171.9 6.7 151 194-359 22-210 (233)
173 cd03216 ABC_Carb_Monos_I This 99.7 6E-18 1.3E-22 163.8 4.4 141 189-363 8-150 (163)
174 COG1129 MglA ABC-type sugar tr 99.7 2.8E-16 6.1E-21 172.2 18.0 161 186-362 13-212 (500)
175 TIGR02315 ABC_phnC phosphonate 99.7 1.3E-17 2.8E-22 172.6 7.1 160 188-362 8-213 (243)
176 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.8E-17 4E-22 170.6 8.1 157 188-359 8-197 (236)
177 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.4E-17 3E-22 174.7 7.3 162 184-360 27-226 (269)
178 TIGR02314 ABC_MetN D-methionin 99.7 1.3E-17 2.8E-22 179.5 7.1 154 195-363 19-209 (343)
179 TIGR03258 PhnT 2-aminoethylpho 99.7 8.1E-18 1.8E-22 182.6 5.5 158 188-360 12-204 (362)
180 TIGR02880 cbbX_cfxQ probable R 99.7 8E-17 1.7E-21 169.6 12.8 153 514-678 45-212 (284)
181 PRK09452 potA putrescine/sperm 99.7 7.4E-18 1.6E-22 183.6 5.0 156 190-360 23-210 (375)
182 TIGR03522 GldA_ABC_ATP gliding 99.7 5E-18 1.1E-22 180.9 3.6 160 189-365 10-202 (301)
183 cd03263 ABC_subfamily_A The AB 99.7 1.5E-17 3.3E-22 169.4 6.7 153 194-363 15-200 (220)
184 TIGR03608 L_ocin_972_ABC putat 99.7 1.8E-17 3.8E-22 167.1 7.1 156 187-358 4-197 (206)
185 cd03264 ABC_drug_resistance_li 99.7 1E-17 2.3E-22 169.4 5.2 155 189-360 8-194 (211)
186 PRK11153 metN DL-methionine tr 99.7 1.1E-17 2.4E-22 181.2 5.5 154 194-362 18-208 (343)
187 cd03268 ABC_BcrA_bacitracin_re 99.7 9.9E-18 2.1E-22 169.2 4.8 156 189-360 8-191 (208)
188 cd03258 ABC_MetN_methionine_tr 99.7 1.4E-17 3.1E-22 171.1 6.1 151 195-360 19-206 (233)
189 PRK10908 cell division protein 99.7 1.2E-17 2.5E-22 170.5 5.3 154 193-362 14-204 (222)
190 cd03256 ABC_PhnC_transporter A 99.7 1.4E-17 3.1E-22 172.0 5.7 160 188-362 7-212 (241)
191 TIGR01186 proV glycine betaine 99.7 2.7E-17 5.9E-22 178.0 7.9 157 191-362 3-197 (363)
192 PRK11264 putative amino-acid A 99.7 1.8E-17 3.9E-22 172.2 6.1 159 188-362 10-211 (250)
193 PRK10851 sulfate/thiosulfate t 99.7 1E-17 2.2E-22 181.6 4.4 157 189-360 10-202 (353)
194 TIGR03411 urea_trans_UrtD urea 99.7 1.8E-17 4E-22 171.3 6.1 159 188-363 9-210 (242)
195 COG4525 TauB ABC-type taurine 99.7 5.1E-17 1.1E-21 153.7 8.3 150 193-357 17-195 (259)
196 PRK13540 cytochrome c biogenes 99.7 3.8E-17 8.1E-22 163.9 7.9 155 189-359 9-191 (200)
197 PRK09493 glnQ glutamine ABC tr 99.7 1.7E-17 3.8E-22 171.3 5.6 159 188-362 8-203 (240)
198 PRK09544 znuC high-affinity zi 99.7 1.4E-17 3.1E-22 172.6 5.0 160 189-363 12-189 (251)
199 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.6E-17 3.6E-22 171.6 5.2 160 188-362 7-203 (242)
200 COG1119 ModF ABC-type molybden 99.7 6.3E-17 1.4E-21 159.7 8.8 164 187-364 37-242 (257)
201 cd03224 ABC_TM1139_LivF_branch 99.7 1.9E-17 4E-22 168.9 5.2 157 188-360 7-197 (222)
202 PRK11124 artP arginine transpo 99.7 1.8E-17 3.9E-22 171.3 5.1 157 188-360 9-206 (242)
203 PRK10895 lipopolysaccharide AB 99.7 2.1E-17 4.6E-22 170.7 5.4 159 188-362 10-204 (241)
204 PRK11607 potG putrescine trans 99.7 1.9E-17 4.1E-22 180.7 5.1 157 189-360 27-215 (377)
205 TIGR01184 ntrCD nitrate transp 99.7 3.5E-17 7.6E-22 167.7 6.9 148 198-360 2-180 (230)
206 TIGR03740 galliderm_ABC gallid 99.7 2.2E-17 4.7E-22 168.6 5.3 159 189-363 8-192 (223)
207 PRK10619 histidine/lysine/argi 99.7 2.1E-17 4.5E-22 172.4 5.1 161 188-364 12-221 (257)
208 PRK13647 cbiO cobalt transport 99.7 2.3E-17 5E-22 173.5 5.4 154 194-363 18-206 (274)
209 TIGR01189 ccmA heme ABC export 99.7 5.6E-17 1.2E-21 162.3 8.0 155 189-359 8-191 (198)
210 PRK11831 putative ABC transpor 99.7 1.9E-17 4.1E-22 173.8 4.4 157 191-362 17-211 (269)
211 COG4152 ABC-type uncharacteriz 99.7 2.7E-17 5.8E-22 161.0 5.1 164 185-364 6-199 (300)
212 PRK13638 cbiO cobalt transport 99.7 2.9E-17 6.2E-22 172.7 5.6 159 188-362 8-203 (271)
213 PRK11300 livG leucine/isoleuci 99.7 2.9E-17 6.2E-22 171.3 5.3 160 189-363 13-222 (255)
214 TIGR03005 ectoine_ehuA ectoine 99.7 2.4E-17 5.2E-22 171.5 4.6 157 189-360 8-212 (252)
215 PRK10575 iron-hydroxamate tran 99.7 2.2E-17 4.7E-22 173.0 4.3 157 189-360 19-213 (265)
216 cd03260 ABC_PstB_phosphate_tra 99.7 3.9E-17 8.4E-22 167.2 5.9 157 187-360 6-205 (227)
217 PRK10584 putative ABC transpor 99.7 6.1E-17 1.3E-21 165.9 7.1 150 195-359 24-211 (228)
218 PRK11231 fecE iron-dicitrate t 99.7 2.5E-17 5.5E-22 171.6 4.3 160 188-363 9-206 (255)
219 KOG0742|consensus 99.7 9.2E-16 2E-20 159.2 15.6 176 205-425 384-587 (630)
220 COG4619 ABC-type uncharacteriz 99.7 1.8E-16 3.8E-21 146.6 9.2 166 189-376 11-209 (223)
221 PRK13541 cytochrome c biogenes 99.7 9.1E-17 2E-21 160.4 8.0 153 191-360 11-188 (195)
222 TIGR03410 urea_trans_UrtE urea 99.7 3.4E-17 7.4E-22 167.9 4.9 160 188-362 7-199 (230)
223 PRK13637 cbiO cobalt transport 99.7 4.5E-17 9.8E-22 172.4 5.8 154 195-363 21-213 (287)
224 PRK10247 putative ABC transpor 99.7 8E-17 1.7E-21 164.6 7.4 157 188-359 14-202 (225)
225 PRK13635 cbiO cobalt transport 99.7 6.4E-17 1.4E-21 170.5 6.8 151 194-359 20-205 (279)
226 PRK13652 cbiO cobalt transport 99.7 3.7E-17 8E-22 172.3 4.7 156 194-364 17-207 (277)
227 PRK13644 cbiO cobalt transport 99.7 6E-17 1.3E-21 170.3 6.3 150 194-359 15-200 (274)
228 PRK13548 hmuV hemin importer A 99.7 3.9E-17 8.5E-22 170.3 4.8 160 188-362 9-208 (258)
229 PRK14250 phosphate ABC transpo 99.7 3.4E-17 7.3E-22 169.1 4.3 160 189-363 11-200 (241)
230 TIGR03415 ABC_choXWV_ATP choli 99.7 7.4E-17 1.6E-21 175.4 7.1 160 186-360 29-230 (382)
231 cd03300 ABC_PotA_N PotA is an 99.7 6.4E-17 1.4E-21 166.1 6.1 162 188-364 7-200 (232)
232 cd03229 ABC_Class3 This class 99.7 3.3E-17 7.1E-22 161.1 3.7 155 190-362 9-168 (178)
233 PRK10253 iron-enterobactin tra 99.7 3.6E-17 7.7E-22 171.4 3.9 161 189-364 15-213 (265)
234 cd03298 ABC_ThiQ_thiamine_tran 99.7 4.8E-17 1E-21 164.5 4.8 149 199-362 16-196 (211)
235 cd03246 ABCC_Protease_Secretio 99.7 9.3E-17 2E-21 157.1 6.6 143 194-359 15-160 (173)
236 PRK13632 cbiO cobalt transport 99.7 1.1E-16 2.4E-21 168.2 7.3 151 194-359 22-207 (271)
237 PRK11144 modC molybdate transp 99.7 8.1E-17 1.7E-21 175.0 6.3 149 199-362 16-196 (352)
238 COG0488 Uup ATPase components 99.7 1.6E-16 3.6E-21 178.6 8.8 152 194-364 335-505 (530)
239 cd03228 ABCC_MRP_Like The MRP 99.7 1.1E-16 2.5E-21 156.2 6.6 141 195-359 16-159 (171)
240 COG4181 Predicted ABC-type tra 99.7 1.5E-16 3.3E-21 147.5 6.9 152 192-358 21-210 (228)
241 PRK10070 glycine betaine trans 99.7 1.1E-16 2.3E-21 175.4 7.0 155 191-360 38-230 (400)
242 cd03247 ABCC_cytochrome_bd The 99.7 1.4E-16 3E-21 156.7 7.1 142 195-359 16-161 (178)
243 PRK13643 cbiO cobalt transport 99.7 1.1E-16 2.4E-21 169.4 6.8 154 195-364 20-213 (288)
244 COG0411 LivG ABC-type branched 99.6 7.6E-17 1.7E-21 159.2 4.9 164 186-364 9-219 (250)
245 cd03230 ABC_DR_subfamily_A Thi 99.6 9.4E-17 2E-21 157.1 5.6 148 191-361 10-161 (173)
246 PRK13650 cbiO cobalt transport 99.6 9.5E-17 2.1E-21 169.3 6.0 149 195-358 21-204 (279)
247 TIGR01978 sufC FeS assembly AT 99.6 1.1E-16 2.4E-21 165.5 6.4 158 187-360 6-209 (243)
248 cd03238 ABC_UvrA The excision 99.6 1.2E-16 2.5E-21 155.8 6.0 139 193-358 7-152 (176)
249 PRK11614 livF leucine/isoleuci 99.6 6.8E-17 1.5E-21 166.5 4.5 160 188-363 12-205 (237)
250 PRK13651 cobalt transporter AT 99.6 1.3E-16 2.9E-21 169.8 6.8 153 195-363 21-233 (305)
251 cd03257 ABC_NikE_OppD_transpor 99.6 1.3E-16 2.7E-21 163.5 6.3 151 195-360 19-211 (228)
252 TIGR03873 F420-0_ABC_ATP propo 99.6 7.3E-17 1.6E-21 168.2 4.5 159 188-362 8-204 (256)
253 TIGR00972 3a0107s01c2 phosphat 99.6 1.1E-16 2.4E-21 166.0 5.8 157 189-362 9-210 (247)
254 TIGR02323 CP_lyasePhnK phospho 99.6 9.7E-17 2.1E-21 167.1 5.3 160 188-362 10-216 (253)
255 PRK13646 cbiO cobalt transport 99.6 1E-16 2.2E-21 169.6 5.6 155 195-364 21-215 (286)
256 PRK13641 cbiO cobalt transport 99.6 1.1E-16 2.3E-21 169.6 5.6 153 195-363 21-213 (287)
257 PRK13636 cbiO cobalt transport 99.6 7.7E-17 1.7E-21 170.3 4.5 156 194-364 19-211 (283)
258 PRK13634 cbiO cobalt transport 99.6 9.9E-17 2.2E-21 170.0 5.2 154 195-363 21-214 (290)
259 PRK09984 phosphonate/organopho 99.6 7.7E-17 1.7E-21 168.6 4.2 161 189-364 12-222 (262)
260 PRK14247 phosphate ABC transpo 99.6 1.9E-16 4E-21 164.6 7.0 158 188-362 10-212 (250)
261 PRK13639 cbiO cobalt transport 99.6 1.5E-16 3.2E-21 167.6 6.1 155 194-364 15-206 (275)
262 PRK13633 cobalt transporter AT 99.6 1.6E-16 3.5E-21 167.7 6.4 151 194-359 23-209 (280)
263 PRK11701 phnK phosphonate C-P 99.6 1.7E-16 3.7E-21 165.6 6.4 160 189-363 14-220 (258)
264 PRK13545 tagH teichoic acids e 99.6 9.1E-17 2E-21 177.9 4.4 154 195-364 38-212 (549)
265 PRK13648 cbiO cobalt transport 99.6 2E-16 4.3E-21 166.1 6.8 150 195-359 23-207 (269)
266 PRK13546 teichoic acids export 99.6 2.1E-16 4.5E-21 164.9 6.9 157 192-364 35-212 (264)
267 TIGR02142 modC_ABC molybdenum 99.6 1.5E-16 3.2E-21 173.2 6.0 147 199-360 15-197 (354)
268 TIGR00968 3a0106s01 sulfate AB 99.6 1.2E-16 2.7E-21 164.5 5.1 161 189-364 8-200 (237)
269 cd03237 ABC_RNaseL_inhibitor_d 99.6 1.9E-16 4.1E-21 163.6 6.3 141 205-360 23-181 (246)
270 PRK10636 putative ABC transpor 99.6 1.3E-16 2.8E-21 186.5 5.7 160 187-365 318-497 (638)
271 PRK15112 antimicrobial peptide 99.6 1.2E-16 2.6E-21 167.5 4.8 154 194-362 26-217 (267)
272 PRK15056 manganese/iron transp 99.6 1E-16 2.2E-21 168.6 4.0 153 194-362 20-209 (272)
273 cd03299 ABC_ModC_like Archeal 99.6 2E-16 4.2E-21 162.8 6.1 153 196-363 14-198 (235)
274 PRK13640 cbiO cobalt transport 99.6 2.2E-16 4.8E-21 166.7 6.5 151 194-359 20-208 (282)
275 PRK13649 cbiO cobalt transport 99.6 1.8E-16 3.8E-21 167.5 5.7 150 195-360 21-210 (280)
276 TIGR01277 thiQ thiamine ABC tr 99.6 2.5E-16 5.4E-21 159.6 6.4 150 196-360 13-194 (213)
277 COG4608 AppF ABC-type oligopep 99.6 2E-16 4.2E-21 159.7 5.5 149 195-363 27-178 (268)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.6E-16 3.4E-21 150.5 4.5 119 192-359 11-131 (144)
279 cd03245 ABCC_bacteriocin_expor 99.6 1.6E-16 3.6E-21 161.8 4.9 148 194-358 17-202 (220)
280 COG1245 Predicted ATPase, RNas 99.6 6.5E-15 1.4E-19 155.6 16.9 149 195-359 87-277 (591)
281 PRK10771 thiQ thiamine transpo 99.6 1.5E-16 3.2E-21 163.4 4.3 150 199-363 17-198 (232)
282 cd03222 ABC_RNaseL_inhibitor T 99.6 2.7E-16 5.8E-21 153.4 5.7 128 189-360 8-137 (177)
283 PRK13645 cbiO cobalt transport 99.6 1.7E-16 3.6E-21 168.4 4.6 153 195-362 25-218 (289)
284 PRK13631 cbiO cobalt transport 99.6 2.7E-16 6E-21 168.4 6.3 152 195-362 40-243 (320)
285 PRK13547 hmuV hemin importer A 99.6 1.7E-16 3.7E-21 166.3 4.7 158 188-360 8-220 (272)
286 TIGR02982 heterocyst_DevA ABC 99.6 3.8E-16 8.2E-21 159.1 6.9 149 194-357 18-204 (220)
287 PRK14242 phosphate transporter 99.6 3E-16 6.5E-21 163.4 6.2 156 190-362 15-215 (253)
288 cd03223 ABCD_peroxisomal_ALDP 99.6 3.4E-16 7.4E-21 152.0 6.2 136 194-358 14-151 (166)
289 PRK14273 phosphate ABC transpo 99.6 3.9E-16 8.5E-21 162.6 7.0 158 188-362 14-216 (254)
290 cd03297 ABC_ModC_molybdenum_tr 99.6 3.1E-16 6.7E-21 159.0 6.1 157 189-362 8-199 (214)
291 cd03248 ABCC_TAP TAP, the Tran 99.6 5.7E-16 1.2E-20 158.4 8.1 148 195-359 28-213 (226)
292 TIGR02770 nickel_nikD nickel i 99.6 4.4E-16 9.5E-21 159.7 7.0 149 197-360 2-191 (230)
293 PRK10419 nikE nickel transport 99.6 2.3E-16 4.9E-21 165.5 4.9 155 194-363 25-220 (268)
294 TIGR02769 nickel_nikE nickel i 99.6 3.8E-16 8.1E-21 163.7 6.5 152 194-360 24-216 (265)
295 PRK14267 phosphate ABC transpo 99.6 3.6E-16 7.7E-21 162.8 6.3 158 188-362 11-215 (253)
296 cd03215 ABC_Carb_Monos_II This 99.6 3.1E-16 6.7E-21 154.8 5.3 145 196-360 15-169 (182)
297 PRK14241 phosphate transporter 99.6 3.9E-16 8.5E-21 162.9 6.4 161 187-364 10-216 (258)
298 PRK15079 oligopeptide ABC tran 99.6 3.2E-16 7E-21 168.5 5.8 152 194-360 34-227 (331)
299 PRK14235 phosphate transporter 99.6 3.6E-16 7.7E-21 164.0 5.8 158 188-362 26-229 (267)
300 PRK14268 phosphate ABC transpo 99.6 4E-16 8.7E-21 162.8 6.2 157 189-362 20-220 (258)
301 cd03254 ABCC_Glucan_exporter_l 99.6 3.8E-16 8.3E-21 160.1 5.6 149 194-359 16-202 (229)
302 PRK15093 antimicrobial peptide 99.6 4E-16 8.6E-21 168.2 5.9 154 194-362 20-226 (330)
303 PRK11022 dppD dipeptide transp 99.6 4.3E-16 9.3E-21 167.4 6.0 151 195-360 21-219 (326)
304 PRK14269 phosphate ABC transpo 99.6 4.5E-16 9.9E-21 161.3 6.0 159 187-362 8-208 (246)
305 PRK10418 nikD nickel transport 99.6 3.9E-16 8.3E-21 162.6 5.3 155 193-362 15-208 (254)
306 cd03213 ABCG_EPDR ABCG transpo 99.6 8.8E-16 1.9E-20 153.1 7.6 142 194-359 22-176 (194)
307 PRK10744 pstB phosphate transp 99.6 4.1E-16 8.8E-21 163.0 5.3 157 189-362 21-222 (260)
308 TIGR03771 anch_rpt_ABC anchore 99.6 1.4E-15 3E-20 155.1 8.9 142 203-360 2-178 (223)
309 cd03234 ABCG_White The White s 99.6 1.1E-15 2.3E-20 156.4 8.0 150 194-359 20-208 (226)
310 cd03251 ABCC_MsbA MsbA is an e 99.6 1.1E-15 2.3E-20 157.3 8.0 148 195-359 16-201 (234)
311 PRK14259 phosphate ABC transpo 99.6 4.8E-16 1E-20 163.1 5.5 158 189-363 21-221 (269)
312 PRK11147 ABC transporter ATPas 99.6 5.1E-16 1.1E-20 181.9 6.3 160 186-364 324-506 (635)
313 PRK15064 ABC transporter ATP-b 99.6 4.4E-16 9.5E-21 179.2 5.6 159 187-364 325-504 (530)
314 PRK14251 phosphate ABC transpo 99.6 5.8E-16 1.2E-20 161.0 6.0 159 188-363 11-214 (251)
315 cd03236 ABC_RNaseL_inhibitor_d 99.6 8.7E-16 1.9E-20 159.3 7.2 149 195-360 15-204 (255)
316 KOG1051|consensus 99.6 1.8E-13 3.8E-18 159.0 26.8 140 523-677 590-787 (898)
317 PRK11308 dppF dipeptide transp 99.6 5.1E-16 1.1E-20 166.8 5.6 151 195-360 29-220 (327)
318 COG4559 ABC-type hemin transpo 99.6 1.7E-15 3.7E-20 145.5 8.4 158 185-358 5-204 (259)
319 PRK13642 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 160.6 8.2 150 195-359 21-205 (277)
320 cd03252 ABCC_Hemolysin The ABC 99.6 1.1E-15 2.4E-20 157.5 7.3 149 194-359 15-201 (237)
321 TIGR02324 CP_lyasePhnL phospho 99.6 1.1E-15 2.3E-20 156.2 7.1 150 194-359 21-213 (224)
322 PRK14248 phosphate ABC transpo 99.6 6.3E-16 1.4E-20 162.3 5.5 158 190-364 30-232 (268)
323 cd03217 ABC_FeS_Assembly ABC-t 99.6 4.6E-16 1E-20 155.9 4.1 150 190-359 9-168 (200)
324 PRK14244 phosphate ABC transpo 99.6 1E-15 2.2E-20 159.2 6.7 158 189-363 13-216 (251)
325 PRK14256 phosphate ABC transpo 99.6 6.9E-16 1.5E-20 160.5 5.3 160 188-364 11-216 (252)
326 COG3840 ThiQ ABC-type thiamine 99.6 8.9E-16 1.9E-20 143.9 5.3 145 200-359 18-194 (231)
327 COG0444 DppD ABC-type dipeptid 99.6 1.1E-15 2.3E-20 157.6 6.4 156 194-364 18-223 (316)
328 COG4598 HisP ABC-type histidin 99.6 4.3E-15 9.4E-20 138.8 9.8 158 186-359 11-216 (256)
329 CHL00131 ycf16 sulfate ABC tra 99.6 1.3E-15 2.8E-20 158.5 7.2 154 190-359 16-215 (252)
330 PRK14260 phosphate ABC transpo 99.6 1.1E-15 2.3E-20 159.7 6.4 160 188-364 14-218 (259)
331 PRK09580 sufC cysteine desulfu 99.6 1E-15 2.2E-20 158.9 5.9 156 188-359 8-209 (248)
332 cd00267 ABC_ATPase ABC (ATP-bi 99.6 7.8E-16 1.7E-20 148.2 4.6 136 191-361 9-146 (157)
333 PRK14240 phosphate transporter 99.6 1.1E-15 2.4E-20 158.8 6.1 160 187-363 9-213 (250)
334 TIGR00763 lon ATP-dependent pr 99.6 4.5E-15 9.7E-20 177.0 12.1 139 525-674 348-505 (775)
335 PRK13549 xylose transporter AT 99.6 1.3E-15 2.8E-20 174.4 7.1 153 194-362 275-472 (506)
336 PRK14274 phosphate ABC transpo 99.6 1.1E-15 2.5E-20 159.5 6.1 156 190-362 21-221 (259)
337 PRK14275 phosphate ABC transpo 99.6 9.7E-16 2.1E-20 162.1 5.6 159 188-363 46-249 (286)
338 PRK14245 phosphate ABC transpo 99.6 1.3E-15 2.8E-20 158.2 6.5 158 189-363 11-213 (250)
339 PRK14254 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 161.5 5.9 156 188-360 46-244 (285)
340 PRK14243 phosphate transporter 99.6 1.5E-15 3.3E-20 158.9 6.7 159 188-363 17-218 (264)
341 COG4133 CcmA ABC-type transpor 99.6 8.4E-15 1.8E-19 138.6 11.0 164 185-364 6-199 (209)
342 PRK14237 phosphate transporter 99.6 1.3E-15 2.8E-20 159.7 6.1 158 190-364 29-231 (267)
343 COG1134 TagH ABC-type polysacc 99.6 8E-16 1.7E-20 152.2 4.2 175 178-368 22-220 (249)
344 PRK14253 phosphate ABC transpo 99.6 1.6E-15 3.4E-20 157.6 6.6 159 188-363 10-212 (249)
345 PRK14262 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 157.6 6.7 156 188-360 10-210 (250)
346 PRK14246 phosphate ABC transpo 99.6 1.3E-15 2.8E-20 158.7 5.9 161 187-364 16-221 (257)
347 PRK15177 Vi polysaccharide exp 99.6 2.4E-15 5.2E-20 152.2 7.7 149 196-362 2-170 (213)
348 PRK14272 phosphate ABC transpo 99.6 1.6E-15 3.4E-20 157.9 6.4 161 187-364 10-216 (252)
349 PRK09473 oppD oligopeptide tra 99.6 1E-15 2.2E-20 164.7 5.1 152 194-360 29-227 (330)
350 cd03244 ABCC_MRP_domain2 Domai 99.6 2.4E-15 5.1E-20 153.3 7.5 149 194-359 17-202 (221)
351 COG1123 ATPase components of v 99.6 1.5E-15 3.3E-20 167.6 6.5 157 194-365 304-500 (539)
352 PRK14258 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 158.5 6.2 161 188-363 14-219 (261)
353 PRK11288 araG L-arabinose tran 99.6 1.7E-15 3.6E-20 173.2 6.8 154 195-364 267-465 (501)
354 PRK13409 putative ATPase RIL; 99.6 1.3E-15 2.9E-20 175.6 5.9 151 197-362 355-521 (590)
355 cd03250 ABCC_MRP_domain1 Domai 99.6 1.9E-15 4.1E-20 152.1 6.3 148 195-359 19-192 (204)
356 COG4175 ProV ABC-type proline/ 99.6 1.4E-15 3.1E-20 154.2 5.3 146 197-357 44-227 (386)
357 PRK14270 phosphate ABC transpo 99.6 1.3E-15 2.9E-20 158.3 5.2 157 191-364 14-215 (251)
358 PRK09700 D-allose transporter 99.6 1.9E-15 4.1E-20 173.2 6.9 153 195-363 277-477 (510)
359 cd03232 ABC_PDR_domain2 The pl 99.6 3.8E-15 8.3E-20 148.3 8.2 138 194-356 20-169 (192)
360 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 3.2E-15 7E-20 154.2 7.9 149 194-359 16-202 (238)
361 COG2274 SunT ABC-type bacterio 99.6 6E-15 1.3E-19 171.4 10.9 163 188-374 480-680 (709)
362 TIGR02633 xylG D-xylose ABC tr 99.6 1.8E-15 3.9E-20 173.1 6.6 153 194-362 273-470 (500)
363 PRK10938 putative molybdenum t 99.6 2.8E-15 6.1E-20 171.0 8.1 159 187-360 266-467 (490)
364 PRK03695 vitamin B12-transport 99.6 1.8E-15 3.8E-20 156.9 5.9 150 196-362 11-200 (248)
365 PRK14238 phosphate transporter 99.6 1.7E-15 3.7E-20 159.1 5.8 157 191-364 34-235 (271)
366 PRK14271 phosphate ABC transpo 99.6 1.8E-15 4E-20 159.2 5.8 160 187-363 27-230 (276)
367 PRK14249 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 157.3 5.6 159 189-364 12-215 (251)
368 PRK15439 autoinducer 2 ABC tra 99.6 2.8E-15 6.1E-20 171.5 7.7 151 196-362 278-470 (510)
369 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.8E-15 4E-20 174.8 6.1 157 187-362 328-507 (552)
370 TIGR02639 ClpA ATP-dependent C 99.6 1.6E-14 3.5E-19 171.3 14.3 162 519-692 198-378 (731)
371 PRK14239 phosphate transporter 99.6 1.9E-15 4E-20 157.3 5.6 159 188-363 12-215 (252)
372 PRK14236 phosphate transporter 99.6 2.1E-15 4.5E-20 158.6 5.9 160 188-364 32-236 (272)
373 PRK14265 phosphate ABC transpo 99.6 2.5E-15 5.3E-20 158.1 6.1 158 189-363 28-228 (274)
374 COG0410 LivF ABC-type branched 99.6 4.9E-15 1.1E-19 145.3 7.5 156 187-357 9-199 (237)
375 cd03253 ABCC_ATM1_transporter 99.6 2.1E-15 4.5E-20 155.4 5.2 149 194-359 14-200 (236)
376 TIGR03269 met_CoM_red_A2 methy 99.6 2.7E-15 5.8E-20 172.4 6.7 154 194-362 297-495 (520)
377 PRK14263 phosphate ABC transpo 99.6 2.9E-15 6.3E-20 156.4 6.4 156 191-363 18-216 (261)
378 TIGR01187 potA spermidine/putr 99.6 4.2E-15 9.1E-20 159.9 7.6 136 210-360 1-166 (325)
379 PRK11819 putative ABC transpor 99.6 2.3E-15 5.1E-20 173.9 6.0 158 187-363 330-510 (556)
380 PLN03073 ABC transporter F fam 99.6 1.9E-15 4.1E-20 177.5 5.2 158 188-364 515-693 (718)
381 PRK14261 phosphate ABC transpo 99.6 2.9E-15 6.3E-20 155.9 6.0 158 189-363 14-216 (253)
382 PRK10261 glutathione transport 99.6 3.3E-15 7.1E-20 174.6 7.1 152 195-361 338-530 (623)
383 KOG0744|consensus 99.6 4E-15 8.7E-20 150.8 6.6 184 170-385 141-335 (423)
384 cd03289 ABCC_CFTR2 The CFTR su 99.6 2.2E-15 4.7E-20 157.9 4.7 148 193-359 16-201 (275)
385 PRK14255 phosphate ABC transpo 99.6 2.9E-15 6.3E-20 155.9 5.6 160 187-363 11-215 (252)
386 COG4161 ArtP ABC-type arginine 99.6 1.1E-14 2.4E-19 133.6 8.7 156 188-359 9-205 (242)
387 PRK10762 D-ribose transporter 99.6 5E-15 1.1E-19 169.3 7.9 151 196-362 267-462 (501)
388 cd03369 ABCC_NFT1 Domain 2 of 99.5 8.7E-15 1.9E-19 147.6 8.0 144 195-359 22-188 (207)
389 PRK10982 galactose/methyl gala 99.5 4.5E-15 9.9E-20 169.3 6.6 154 194-363 261-459 (491)
390 PRK15134 microcin C ABC transp 99.5 3.2E-15 7E-20 172.0 5.0 154 194-363 299-494 (529)
391 COG4604 CeuD ABC-type enteroch 99.5 8.4E-15 1.8E-19 139.1 6.8 160 185-359 5-200 (252)
392 PRK14266 phosphate ABC transpo 99.5 5E-15 1.1E-19 153.9 5.8 158 189-363 11-213 (250)
393 PRK14264 phosphate ABC transpo 99.5 5.4E-15 1.2E-19 157.8 6.1 155 189-360 53-264 (305)
394 COG4107 PhnK ABC-type phosphon 99.5 2.5E-14 5.5E-19 132.9 9.6 155 188-357 13-214 (258)
395 TIGR01257 rim_protein retinal- 99.5 6.2E-15 1.3E-19 185.8 7.3 155 194-364 1952-2139(2272)
396 PRK11034 clpA ATP-dependent Cl 99.5 9.7E-14 2.1E-18 162.7 16.1 156 522-689 205-379 (758)
397 cd03290 ABCC_SUR1_N The SUR do 99.5 1.8E-14 3.9E-19 146.5 8.5 149 194-359 14-206 (218)
398 COG4988 CydD ABC-type transpor 99.5 1.7E-14 3.6E-19 158.8 8.0 156 195-374 335-527 (559)
399 cd03233 ABC_PDR_domain1 The pl 99.5 3.5E-14 7.5E-19 142.5 9.7 152 193-359 19-184 (202)
400 PRK14252 phosphate ABC transpo 99.5 7E-15 1.5E-19 154.1 4.8 159 188-363 23-228 (265)
401 PRK11176 lipid transporter ATP 99.5 1.7E-14 3.7E-19 168.4 8.2 159 193-375 355-552 (582)
402 TIGR02868 CydC thiol reductant 99.5 1.4E-14 3.1E-19 167.0 6.8 145 194-355 348-529 (529)
403 PLN03211 ABC transporter G-25; 99.5 3E-14 6.4E-19 166.6 9.4 152 189-356 76-267 (659)
404 TIGR01257 rim_protein retinal- 99.5 1.6E-14 3.5E-19 182.1 7.6 151 193-360 942-1125(2272)
405 PRK11160 cysteine/glutathione 99.5 2.5E-14 5.3E-19 166.2 8.3 149 194-359 353-538 (574)
406 PRK14257 phosphate ABC transpo 99.5 1.7E-14 3.7E-19 155.1 6.2 154 194-364 95-293 (329)
407 cd03288 ABCC_SUR2 The SUR doma 99.5 2.6E-14 5.6E-19 149.1 7.4 149 194-359 34-219 (257)
408 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.8E-14 3.8E-19 171.2 6.8 155 193-374 465-657 (686)
409 COG4148 ModC ABC-type molybdat 99.5 1.2E-14 2.5E-19 145.1 4.3 146 199-359 16-193 (352)
410 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 2.2E-14 4.7E-19 171.1 7.0 156 193-374 491-684 (710)
411 PRK11174 cysteine/glutathione 99.5 2E-14 4.2E-19 168.0 6.3 158 193-375 362-557 (588)
412 PRK10789 putative multidrug tr 99.5 3E-14 6.6E-19 165.4 7.6 150 193-359 327-514 (569)
413 cd03291 ABCC_CFTR1 The CFTR su 99.5 3.6E-14 7.8E-19 149.3 7.3 148 194-359 50-223 (282)
414 COG4987 CydC ABC-type transpor 99.5 6.2E-14 1.4E-18 151.9 9.2 165 187-375 344-546 (573)
415 COG1137 YhbG ABC-type (unclass 99.5 7E-15 1.5E-19 140.1 1.7 157 185-357 8-201 (243)
416 TIGR02857 CydD thiol reductant 99.5 2.9E-14 6.2E-19 164.4 7.1 148 194-358 335-520 (529)
417 TIGR03375 type_I_sec_LssB type 99.5 2.9E-14 6.4E-19 169.5 6.5 158 193-374 477-672 (694)
418 TIGR02203 MsbA_lipidA lipid A 99.5 3.7E-14 8E-19 165.2 7.0 157 194-374 345-540 (571)
419 COG4136 ABC-type uncharacteriz 99.5 3.8E-14 8.1E-19 128.7 5.3 157 186-359 7-199 (213)
420 PRK10790 putative multidrug tr 99.5 2.6E-14 5.5E-19 167.1 5.4 156 194-374 354-547 (592)
421 TIGR01842 type_I_sec_PrtD type 99.5 8.4E-14 1.8E-18 161.0 9.4 150 194-359 331-518 (544)
422 TIGR00954 3a01203 Peroxysomal 99.5 4E-14 8.6E-19 166.3 6.8 156 193-374 464-651 (659)
423 TIGR01192 chvA glucan exporter 99.5 4.6E-14 9.9E-19 164.2 7.1 157 194-374 348-542 (585)
424 PRK13657 cyclic beta-1,2-gluca 99.5 4.3E-14 9.4E-19 164.9 6.4 157 194-374 348-542 (588)
425 KOG0058|consensus 99.5 7.2E-14 1.6E-18 156.7 7.6 156 187-359 473-667 (716)
426 KOG0057|consensus 99.5 6.9E-14 1.5E-18 151.7 6.7 159 193-376 364-560 (591)
427 COG3845 ABC-type uncharacteriz 99.5 1.6E-13 3.5E-18 147.6 9.4 157 188-360 11-205 (501)
428 KOG0927|consensus 99.5 1.1E-13 2.4E-18 149.5 8.1 148 195-361 404-572 (614)
429 PRK10522 multidrug transporter 99.4 9.3E-14 2E-18 160.6 7.9 159 194-374 336-522 (547)
430 cd03270 ABC_UvrA_I The excisio 99.4 1.7E-13 3.8E-18 139.8 8.8 152 190-358 4-202 (226)
431 TIGR01193 bacteriocin_ABC ABC- 99.4 7.8E-14 1.7E-18 166.2 7.1 157 193-374 486-681 (708)
432 TIGR01846 type_I_sec_HlyB type 99.4 1.7E-13 3.8E-18 162.8 9.8 150 193-359 469-656 (694)
433 cd03278 ABC_SMC_barmotin Barmo 99.4 3.1E-13 6.8E-18 134.8 9.5 142 198-359 14-180 (197)
434 TIGR02204 MsbA_rel ABC transpo 99.4 1.7E-13 3.7E-18 159.7 8.5 157 194-374 353-547 (576)
435 PRK10865 protein disaggregatio 99.4 7.3E-13 1.6E-17 158.9 13.8 146 520-678 195-358 (857)
436 COG4618 ArpD ABC-type protease 99.4 2.1E-13 4.5E-18 146.6 7.9 154 190-359 345-536 (580)
437 TIGR01194 cyc_pep_trnsptr cycl 99.4 2.1E-13 4.6E-18 157.8 8.5 149 195-359 356-535 (555)
438 TIGR00958 3a01208 Conjugate Tr 99.4 1.4E-13 3.1E-18 163.6 7.3 155 194-374 494-686 (711)
439 PRK10535 macrolide transporter 99.4 2.1E-13 4.6E-18 160.1 8.3 150 194-359 21-208 (648)
440 COG4172 ABC-type uncharacteriz 99.4 2.4E-13 5.3E-18 142.0 7.5 150 195-360 301-492 (534)
441 KOG0055|consensus 99.4 1.9E-13 4.2E-18 161.8 7.6 150 194-360 366-553 (1228)
442 COG1101 PhnK ABC-type uncharac 99.4 3.8E-13 8.3E-18 129.8 7.2 149 194-357 19-211 (263)
443 PF05496 RuvB_N: Holliday junc 99.4 3.1E-12 6.7E-17 126.4 13.4 143 524-689 50-205 (233)
444 TIGR03345 VI_ClpV1 type VI sec 99.4 1.6E-12 3.5E-17 155.4 13.6 156 521-689 205-380 (852)
445 TIGR00955 3a01204 The Eye Pigm 99.4 6.5E-13 1.4E-17 155.2 10.0 148 193-356 37-227 (617)
446 COG1132 MdlB ABC-type multidru 99.4 3.7E-13 7.9E-18 156.5 7.3 155 188-359 335-528 (567)
447 PRK05342 clpX ATP-dependent pr 99.4 2.1E-12 4.6E-17 141.9 12.6 144 524-672 108-323 (412)
448 PF05496 RuvB_N: Holliday junc 99.4 8.5E-12 1.8E-16 123.3 15.5 154 168-385 21-187 (233)
449 TIGR00635 ruvB Holliday juncti 99.4 9.5E-12 2.1E-16 133.3 16.8 213 169-449 2-228 (305)
450 TIGR00382 clpX endopeptidase C 99.4 2.8E-12 6.1E-17 140.1 12.4 145 524-673 116-330 (413)
451 PRK00080 ruvB Holliday junctio 99.4 8.1E-12 1.8E-16 135.0 15.7 184 523-729 50-248 (328)
452 COG2256 MGS1 ATPase related to 99.4 5.6E-12 1.2E-16 132.6 13.8 175 524-727 48-234 (436)
453 CHL00095 clpC Clp protease ATP 99.4 7.1E-12 1.5E-16 150.6 16.2 145 518-675 194-355 (821)
454 COG4167 SapF ABC-type antimicr 99.4 1.4E-12 3.1E-17 122.3 7.6 150 195-359 27-214 (267)
455 PRK10787 DNA-binding ATP-depen 99.4 2.5E-12 5.3E-17 152.2 11.5 141 523-675 348-507 (784)
456 PTZ00265 multidrug resistance 99.4 4.5E-13 9.7E-18 168.8 5.5 79 277-377 1356-1434(1466)
457 KOG2004|consensus 99.4 8.2E-12 1.8E-16 138.6 14.5 194 523-736 437-650 (906)
458 PRK00080 ruvB Holliday junctio 99.3 2.3E-11 5E-16 131.5 17.7 214 168-449 22-249 (328)
459 COG0396 sufC Cysteine desulfur 99.3 7.3E-13 1.6E-17 129.6 5.3 154 190-359 12-208 (251)
460 TIGR00956 3a01205 Pleiotropic 99.3 1.2E-12 2.5E-17 164.8 8.6 149 193-357 775-964 (1394)
461 COG4674 Uncharacterized ABC-ty 99.3 2.4E-13 5.1E-18 129.1 1.5 158 186-360 10-211 (249)
462 PTZ00265 multidrug resistance 99.3 1.4E-12 3E-17 164.4 8.4 150 195-359 399-644 (1466)
463 KOG0059|consensus 99.3 5.8E-13 1.3E-17 160.8 4.8 157 196-368 580-771 (885)
464 KOG0066|consensus 99.3 2.1E-11 4.5E-16 128.1 15.4 148 192-358 598-764 (807)
465 TIGR03346 chaperone_ClpB ATP-d 99.3 5.5E-12 1.2E-16 152.0 12.9 148 520-680 190-355 (852)
466 PLN03140 ABC transporter G fam 99.3 1.9E-12 4E-17 162.6 9.1 149 192-356 891-1080(1470)
467 COG4778 PhnL ABC-type phosphon 99.3 1.2E-12 2.6E-17 121.5 4.9 147 195-357 25-214 (235)
468 TIGR00635 ruvB Holliday juncti 99.3 3.7E-11 8.1E-16 128.7 16.0 183 524-730 30-228 (305)
469 PLN03232 ABC transporter C fam 99.3 2.6E-12 5.5E-17 163.4 7.8 149 194-359 1249-1434(1495)
470 KOG0055|consensus 99.3 7E-12 1.5E-16 148.8 10.8 156 187-359 995-1189(1228)
471 cd03240 ABC_Rad50 The catalyti 99.3 4.9E-12 1.1E-16 127.0 8.0 72 275-359 111-187 (204)
472 PF00005 ABC_tran: ABC transpo 99.3 1.8E-12 3.9E-17 121.6 3.9 108 198-307 2-134 (137)
473 PLN03130 ABC transporter C fam 99.3 3.6E-12 7.9E-17 162.1 7.6 148 194-359 1252-1437(1622)
474 COG0466 Lon ATP-dependent Lon 99.3 1.3E-11 2.9E-16 137.9 11.0 140 525-675 351-509 (782)
475 cd03276 ABC_SMC6_euk Eukaryoti 99.3 1.5E-11 3.2E-16 122.9 9.9 146 196-359 11-180 (198)
476 COG2255 RuvB Holliday junction 99.3 8.3E-11 1.8E-15 118.3 15.1 155 167-385 22-189 (332)
477 TIGR02640 gas_vesic_GvpN gas v 99.3 6.7E-11 1.5E-15 123.5 14.9 190 523-733 20-259 (262)
478 cd03273 ABC_SMC2_euk Eukaryoti 99.3 5.5E-12 1.2E-16 131.1 6.6 68 275-359 162-233 (251)
479 PLN03140 ABC transporter G fam 99.3 5.5E-12 1.2E-16 158.4 7.5 149 193-356 177-398 (1470)
480 cd03271 ABC_UvrA_II The excisi 99.3 1.2E-11 2.6E-16 127.9 8.8 93 260-375 149-245 (261)
481 cd03279 ABC_sbcCD SbcCD and ot 99.3 1.1E-11 2.4E-16 125.5 8.1 70 274-359 118-197 (213)
482 TIGR00956 3a01205 Pleiotropic 99.3 9.5E-12 2.1E-16 156.7 9.3 149 193-356 73-271 (1394)
483 PTZ00243 ABC transporter; Prov 99.3 6.3E-12 1.4E-16 159.7 7.7 149 193-359 1322-1509(1560)
484 PRK06893 DNA replication initi 99.2 6.7E-11 1.4E-15 121.0 13.7 179 526-728 41-227 (229)
485 TIGR00957 MRP_assoc_pro multi 99.2 8.9E-12 1.9E-16 158.7 8.1 153 194-360 651-827 (1522)
486 TIGR02928 orc1/cdc6 family rep 99.2 2E-10 4.4E-15 126.2 17.6 199 524-735 40-278 (365)
487 PTZ00243 ABC transporter; Prov 99.2 1E-11 2.2E-16 157.9 8.2 151 192-359 671-846 (1560)
488 TIGR00957 MRP_assoc_pro multi 99.2 1.3E-11 2.8E-16 157.3 8.7 148 194-359 1299-1484(1522)
489 cd03274 ABC_SMC4_euk Eukaryoti 99.2 3E-11 6.6E-16 121.9 9.6 146 191-356 14-191 (212)
490 PRK00635 excinuclease ABC subu 99.2 3.1E-11 6.6E-16 150.5 11.5 89 263-374 792-884 (1809)
491 TIGR01271 CFTR_protein cystic 99.2 9.6E-12 2.1E-16 157.9 7.1 148 194-359 439-612 (1490)
492 TIGR01271 CFTR_protein cystic 99.2 1.1E-11 2.3E-16 157.5 7.2 148 193-359 1231-1416(1490)
493 KOG0062|consensus 99.2 2.4E-11 5.3E-16 130.9 8.8 169 164-363 359-547 (582)
494 PRK13342 recombination factor 99.2 2.3E-10 5E-15 127.5 16.9 143 525-695 37-186 (413)
495 PRK00149 dnaA chromosomal repl 99.2 6E-11 1.3E-15 133.7 11.9 188 525-731 149-349 (450)
496 COG2256 MGS1 ATPase related to 99.2 1.4E-10 3E-15 122.2 13.3 142 168-382 21-168 (436)
497 cd03272 ABC_SMC3_euk Eukaryoti 99.2 9E-11 1.9E-15 121.4 11.7 67 274-357 153-223 (243)
498 COG4178 ABC-type uncharacteriz 99.2 1.9E-11 4.2E-16 137.1 6.9 146 195-358 407-577 (604)
499 PRK14962 DNA polymerase III su 99.2 1.9E-10 4.1E-15 128.9 14.8 174 525-728 37-239 (472)
500 TIGR02928 orc1/cdc6 family rep 99.2 8.4E-10 1.8E-14 121.3 19.7 240 170-450 14-274 (365)
No 1
>KOG0733|consensus
Probab=100.00 E-value=2.2e-86 Score=708.03 Aligned_cols=491 Identities=39% Similarity=0.640 Sum_probs=403.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
++++|.||||++++..++.+.+.. +.+|+.|..+|+.+|+|++|+||||||||+||++|||+++.+|..++.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA------- 256 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA------- 256 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecc-------
Confidence 478999999999999999999988 999999999999999999999999999999999999999999999986
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
.++++.++|++++++|++|..|....|||+||||||+|.++|... +-+ -
T Consensus 257 ----------------------------peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qre-M 305 (802)
T KOG0733|consen 257 ----------------------------PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QRE-M 305 (802)
T ss_pred ----------------------------hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHH-H
Confidence 778889999999999999999999999999999999999998542 222 2
Q ss_pred HHHHHHHHHHhccCCCCC----CCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 326 IQRTLMELLNQMDGFDSL----GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~----~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
.++.+.++|+.||++... ..|.||+|||+||.|||+|+|+||||++|.+..|++.+|.+| ++.....+....+
T Consensus 306 ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~I---L~~~~~~lrl~g~ 382 (802)
T KOG0733|consen 306 ERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEI---LRIICRGLRLSGD 382 (802)
T ss_pred HHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHH---HHHHHhhCCCCCC
Confidence 367788999988876533 579999999999999999999999999999999999999999 7777777888889
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcccc----chH----h-----HHHHHHHhcccccccccCcch-----
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYV----TQE----D-----FMKAVRKVSDNKKLDHCNSYR----- 463 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i----~~~----d-----~~~a~~~~~~~~~~~~~~~~~----- 463 (741)
+++..+|+.|.||.|||+.++|.+|+..|+++.-... +.. + +......+.............
T Consensus 383 ~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~ 462 (802)
T KOG0733|consen 383 FDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQD 462 (802)
T ss_pred cCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHH
Confidence 9999999999999999999999999999998743211 100 0 000000000000000000000
Q ss_pred h---ccc-cccccccccccchhHHHHHHHhhccccccccc------------------cccccceeccCCChHHHHhcCC
Q psy11254 464 T---EAG-LFAIRSEREYVTQEDFMKAVRKVSDNKKLESK------------------LDYKPVIELPLLNPELFQRVGI 521 (741)
Q Consensus 464 ~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~~~i~~~~~~~~~~~~~~~ 521 (741)
. ... ..........+...||..++..+.+..+.+.. .++...+.+|+++|+.|+.+|+
T Consensus 463 ~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi 542 (802)
T KOG0733|consen 463 AILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI 542 (802)
T ss_pred HHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC
Confidence 0 000 00011223457788999888887665544322 2334567899999999999999
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 601 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~ 601 (741)
..+.|+|||||||||||.+|+++|++.+.+|++|.+++|+++|+|||++.+|.+|++||..+||||||||+|++.++|+.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhc--Cccc
Q psy11254 602 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG--PIAK 679 (741)
Q Consensus 602 ~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~--~~~~ 679 (741)
.+.+ ...|+++|||.+|||++...+|+||+|||||+.||||+|||||||+.+|+++|+.++|.+||+.+.+ .-+.
T Consensus 623 ~~s~---~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl 699 (802)
T KOG0733|consen 623 EGSS---VSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPL 699 (802)
T ss_pred CCch---hHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCC
Confidence 6533 4579999999999999999999999999999999999999999999999999999999999999988 4344
Q ss_pred cCCCC--cccccccccccccchHH
Q psy11254 680 HGEIG--DAATKWVLPFTAGGFIY 701 (741)
Q Consensus 680 ~~~~~--~~a~~~l~~~~s~gf~~ 701 (741)
+.+++ ..+....+...+|++..
T Consensus 700 ~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 700 SSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred CcccCHHHHhhcccccCCchhhHH
Confidence 44444 33333333344444443
No 2
>KOG0730|consensus
Probab=100.00 E-value=8.4e-77 Score=645.50 Aligned_cols=492 Identities=41% Similarity=0.660 Sum_probs=422.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
+.++ +++||+..+...+++.+.+|+.++..+..+|..+|+|+++|||||||||.+++++|++.++.+..+.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~------- 251 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLING------- 251 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEeccc-------
Confidence 5566 79999999999999999999999999999999999999999999999999999999999987777665
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcC-CeEEEeccccccccccCCCCCCccH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQ-PCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~-P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+++++++.|+++..+|.+|+.|..++ |++|||||+|+++++|.....
T Consensus 252 ----------------------------peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---- 299 (693)
T KOG0730|consen 252 ----------------------------PELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---- 299 (693)
T ss_pred ----------------------------HHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----
Confidence 67788999999999999999999999 999999999999998854322
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCH
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~ 404 (741)
...+...+++..+++....+++.||.+||+++.||++++| ||||+.+.+..|+..+|.+| ++.+...+....++++
T Consensus 300 ~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldI---l~~l~k~~~~~~~~~l 375 (693)
T KOG0730|consen 300 VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDI---LRVLTKKMNLLSDVDL 375 (693)
T ss_pred HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHH---HHHHHHhcCCcchhhH
Confidence 2345555666666666567899999999999999999999 99999999999999999999 8888888888778999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcccccccccCcchhccccccccccccccchhHHH
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFM 484 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (741)
..++..++||.|+|+..+|++|.+.+.++ +.+++..+...+.+..... ...+...++++|+.
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~psa~Re-------------~~ve~p~v~W~dIG 437 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGIRPSALRE-------------ILVEMPNVSWDDIG 437 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCCchhhhh-------------eeccCCCCChhhcc
Confidence 99999999999999999999999998877 6677777766554432211 11122334455431
Q ss_pred HHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccc
Q psy11254 485 KAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 564 (741)
Q Consensus 485 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~ 564 (741)
.....|..+++.+.||+++|+.|.++|+.+++|||||||||||||++|+++|++.+.+|++++++++.++|
T Consensus 438 ---------GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 438 ---------GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred ---------CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 01122445667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 565 IGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 644 (741)
Q Consensus 565 ~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~ 644 (741)
+|+||+.++++|++||..+|||+||||||++.+.|+++++ ....|++++||++|||+....+|+||++||||+.||+
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ 585 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDP 585 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCH
Confidence 9999999999999999999999999999999999974433 4567999999999999999999999999999999999
Q ss_pred cccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhc--CCCcccHH
Q psy11254 645 ALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLED--TSPKQTVK 722 (741)
Q Consensus 645 al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~--~~~~~s~~ 722 (741)
|++||||||++||||+||.++|.+||+.+++.++.+.+++-..+.......+|+.+...-..++..-+.+ +.+....+
T Consensus 586 ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~ 665 (693)
T KOG0730|consen 586 ALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQ 665 (693)
T ss_pred HHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 9999999999999999999999999999999999888777666666667777777665555555444444 36678888
Q ss_pred HHHHHHHHH
Q psy11254 723 EILALLLGV 731 (741)
Q Consensus 723 ~i~~~l~g~ 731 (741)
|.+.++..+
T Consensus 666 hf~~al~~~ 674 (693)
T KOG0730|consen 666 HFEEALKAV 674 (693)
T ss_pred HHHHHHHhh
Confidence 888877654
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-72 Score=570.35 Aligned_cols=371 Identities=53% Similarity=0.864 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhh
Q psy11254 12 KTLQDYRKKLTEHAEV-E-GRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKAL 89 (741)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (741)
..+.+++.++++...- . .+..++......+.+..+.++++++.+++.++. |+++++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~------vg~v~e~id~~----------- 85 (406)
T COG1222 23 NKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLI------VGTVLEVLDDG----------- 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCce------EEEEEEEcCCc-----------
Confidence 3444555555444321 1 123333333336667888899999999999988 99999999999
Q ss_pred hhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCC
Q psy11254 90 QSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDIT 169 (741)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (741)
+++|+++++|+|++++.+.++...|+||.+|+++..++++++.+|+..||.+..|..++.|+++
T Consensus 86 ----------------~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~Pdvt 149 (406)
T COG1222 86 ----------------RAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVT 149 (406)
T ss_pred ----------------eEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
|+|||||++++++|+|.|++|+.+|++|..+|+.+|+|++||||||||||.|||++|+..+++|.++.+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg----------- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG----------- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
++++.+|+|++.+.||++|+.|+.+.||||||||||+++++|...+++.|++++++
T Consensus 219 ------------------------SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRT 274 (406)
T COG1222 219 ------------------------SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRT 274 (406)
T ss_pred ------------------------HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHH
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVK 409 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~ 409 (741)
++++|++||||+..++|.||+|||+++.||||++||||||+.|+||+|+..+|.+| +++|++.|....++|++.+++
T Consensus 275 mleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~I---l~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 275 MLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEI---LKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred HHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHH---HHHHhhhccCccCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 410 LSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 410 ~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
.++||+|||++++|.+|++.|+|..+..++++||.+|.+++...
T Consensus 352 ~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 352 LTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred hcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988653
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-63 Score=590.71 Aligned_cols=502 Identities=43% Similarity=0.681 Sum_probs=402.8
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
.++++|+||||+++++++|++.+.+|+.++++|+.+++.+++|++|+||||||||+|+++||+.++..+..+.+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~------ 245 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISING------ 245 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEec------
Confidence 46799999999999999999999999999999999999999999999999999999999999999888877654
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
.++.+.|.|+..++++.+|..|....|+||||||+|++++++..+.++.+.
T Consensus 246 -----------------------------~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 296 (733)
T TIGR01243 246 -----------------------------PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK 296 (733)
T ss_pred -----------------------------HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH
Confidence 445567889999999999999999999999999999999988766666555
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCH
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~ 404 (741)
.....| +..++++...+.+.||++||+++.+|+++.|+|||+..+.++.|+..+|.+| +..+...+....+.++
T Consensus 297 ~~~~~L---l~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I---l~~~~~~~~l~~d~~l 370 (733)
T TIGR01243 297 RVVAQL---LTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI---LKVHTRNMPLAEDVDL 370 (733)
T ss_pred HHHHHH---HHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH---HHHHhcCCCCccccCH
Confidence 544444 4445554446788999999999999999999999999999999999999998 6677777766678889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcc-------------------ccchHhHHHHHHHhcccccccccCcchhc
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSERE-------------------YVTQEDFMKAVRKVSDNKKLDHCNSYRTE 465 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~-------------------~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 465 (741)
..++..++||+|+|+..+|++|++.++++... .++.+++..+++.+.+.......
T Consensus 371 ~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~------ 444 (733)
T TIGR01243 371 DKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVL------ 444 (733)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhh------
Confidence 99999999999999999999999888765321 23445555555444332110000
Q ss_pred cccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHH
Q psy11254 466 AGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 545 (741)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a 545 (741)
.....+.++++. .....+..+.+.+.+|+.+++++..+++.++.+++||||||||||++|+++|
T Consensus 445 -------~~~~~~~~~di~---------g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 445 -------VEVPNVRWSDIG---------GLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred -------ccccccchhhcc---------cHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 000011111110 0001122344567889999999999999999999999999999999999999
Q ss_pred HHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC
Q psy11254 546 SQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 625 (741)
Q Consensus 546 ~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~ 625 (741)
++++.+|+.++++++.++|+|+++++++.+|+.|+...||||||||+|++++.|+....+ ....++++++|.+|||+.
T Consensus 509 ~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~--~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 509 TESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDT--SVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred HhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCc--cHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999988644322 245789999999999998
Q ss_pred CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHH
Q psy11254 626 SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATV 705 (741)
Q Consensus 626 ~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~ 705 (741)
..++++||+|||+|+.+|+|++||||||++|+||+|+.++|.+||+.++.......+++...+.......+++.+.....
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998776655555444555555566666554444
Q ss_pred Hhhhhhhhc------------------CCCcccHHHHHHHHHHH
Q psy11254 706 SVIPELLED------------------TSPKQTVKEILALLLGV 731 (741)
Q Consensus 706 ~~~~~l~~~------------------~~~~~s~~~i~~~l~g~ 731 (741)
+++...+.+ .....+.+|+..++..+
T Consensus 667 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 667 EAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 333332221 12357788888777543
No 5
>KOG0728|consensus
Probab=100.00 E-value=9.3e-60 Score=455.08 Aligned_cols=370 Identities=49% Similarity=0.774 Sum_probs=350.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHH
Q psy11254 12 KTLQDYRKKLTE----HAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLK 87 (741)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (741)
..-+-|.|++-+ +.+....+++++.+.++|+...+-++++++-+++.+.+ |+|++|...+.
T Consensus 17 ~~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsy------vgev~k~m~k~--------- 81 (404)
T KOG0728|consen 17 GLRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSY------VGEVVKAMGKK--------- 81 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcch------HHHHHHhcCcc---------
Confidence 333444555532 23445788899999999999999999999999999998 89999999998
Q ss_pred hhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCC
Q psy11254 88 ALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGD 167 (741)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (741)
++.++.....+|++.+...++-.+++++.+|++...++.+.+.+|..+||+++-|-.+++|+
T Consensus 82 ------------------kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPD 143 (404)
T KOG0728|consen 82 ------------------KVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPD 143 (404)
T ss_pred ------------------eEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+|+.+|||++++++|+|.+++|..+|++|+.+|+..|+|++||||||+|||.|++++|....+.|+++++
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsg--------- 214 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG--------- 214 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEech---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
++++.+|.|++.+.+|++|-.|+.+.|+|||+||||+++++|...+.+.|.+.+
T Consensus 215 --------------------------selvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevq 268 (404)
T KOG0728|consen 215 --------------------------SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQ 268 (404)
T ss_pred --------------------------HHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHH
Confidence 788999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHH
Q psy11254 328 RTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407 (741)
Q Consensus 328 ~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~l 407 (741)
++++++|++++||....++.||++||+.|.+||+++||||+|+.|+||+|++.+|.+| +++|.+.+....++++..+
T Consensus 269 rtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~i---lkihsrkmnl~rgi~l~ki 345 (404)
T KOG0728|consen 269 RTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI---LKIHSRKMNLTRGINLRKI 345 (404)
T ss_pred HHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHH---HHHhhhhhchhcccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 408 a~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
++...|.+|++++.+|.+|++.+++..+-.++++||+-|..++..
T Consensus 346 aekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 346 AEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred HHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887654
No 6
>KOG0726|consensus
Probab=100.00 E-value=5.5e-59 Score=458.56 Aligned_cols=374 Identities=42% Similarity=0.714 Sum_probs=350.9
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHH
Q psy11254 9 VRHKTLQDYRK-KLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLK 87 (741)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (741)
.++++++-.+. ++..+..+++++-+.++.++-..+.+.+-+++|++++..|.. |+.+.+.|+++
T Consensus 55 ~~~C~lrlLk~~RIkDyLLMEEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPms------vg~leEiidd~--------- 119 (440)
T KOG0726|consen 55 HTQCKLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMS------VGTLEEIIDDN--------- 119 (440)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhHHHhhcCCccc------cccHHHHhcCC---------
Confidence 34555555543 345566777888888888886666677777999999999998 89999999998
Q ss_pred hhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCC
Q psy11254 88 ALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGD 167 (741)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (741)
+.++.++.+++|++++.+.+++..|.||+.|.++....++++.+.+..||++..|..+..|.
T Consensus 120 ------------------haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~ 181 (440)
T KOG0726|consen 120 ------------------HAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQ 181 (440)
T ss_pred ------------------ceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCch
Confidence 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+|+|||||+.++++|+|.+++|+.+|++|+..|+.+|+|++|||+||||||.|||++|+...++|.++.+
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG--------- 252 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG--------- 252 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
++++.+|+|.+++.+|++|..|..+.|+|+||||||+++.+|.+..++..++.+
T Consensus 253 --------------------------seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQ 306 (440)
T KOG0726|consen 253 --------------------------SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306 (440)
T ss_pred --------------------------HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHH
Confidence 788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHH
Q psy11254 328 RTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407 (741)
Q Consensus 328 ~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~l 407 (741)
++++++|++++||++++.|.||+|||+.+.+||++.||||+|+.|+|+.||+..+..| +.+|+..|....+++++.+
T Consensus 307 rtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI---f~IHTs~Mtl~~dVnle~l 383 (440)
T KOG0726|consen 307 RTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI---FQIHTSRMTLAEDVNLEEL 383 (440)
T ss_pred HHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee---EEEeecccchhccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 408 a~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
....+.++||||+++|.+|++.|+|..+..++.+||.++.+++...
T Consensus 384 i~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 384 IMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred hhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998877543
No 7
>KOG0727|consensus
Probab=100.00 E-value=2.8e-58 Score=445.28 Aligned_cols=348 Identities=45% Similarity=0.768 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEEEEecCC
Q psy11254 34 MREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATN 113 (741)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (741)
+..+.+.|.+.....++++++.++.+.. |++.+++++.+ +.++.+++
T Consensus 51 ik~e~~~lkre~~~aqeevkriqsvplv------igqfle~vdqn---------------------------t~ivgstt 97 (408)
T KOG0727|consen 51 IKDEQRNLKRELLHAQEEVKRIQSVPLV------IGQFLEAVDQN---------------------------TAIVGSTT 97 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchH------HHHHHHhhhcc---------------------------Cceeeccc
Confidence 3344456677777888999999999988 99999999998 66999999
Q ss_pred CCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHHHhhccCCC
Q psy11254 114 GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLN 193 (741)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~ 193 (741)
|.+|++.+.+.++++.|+|...|+++..+..+++.+|++.|+....+...+.|+++|.|||||+-+|++|+|.+++|+.+
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~ 177 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTH 177 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCc
Q psy11254 194 PELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYS 273 (741)
Q Consensus 194 ~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (741)
.++++.+|+++|+|++||||||||||+|+|++|+...+.|+++.+
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg----------------------------------- 222 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG----------------------------------- 222 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc-----------------------------------
Confidence 999999999999999999999999999999999999999999987
Q ss_pred cchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC
Q psy11254 274 SAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 353 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~ 353 (741)
++++.+|.|++++++|+.|..|..+.|+|+||||+|+|+.+|.....+.|++.++.+.++|++|+||+...+|.||++||
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 354 RPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 354 ~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
+.+.+||+++||||+|+.|+||.|+..++.-+ +......|....++|++.+..+.+..+|++|.++|++|++.+.+.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlv---f~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLV---FSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhh---HHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 99999999999999999999999999888776 777788899999999999999999999999999999999999999
Q ss_pred hccccchHhHHHHHHHhcc
Q psy11254 434 EREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 434 ~~~~i~~~d~~~a~~~~~~ 452 (741)
.+..+.+.||+++.+....
T Consensus 380 nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 380 NRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred cceeeeHHHHHHHHHhhcC
Confidence 9999999999999876543
No 8
>KOG0736|consensus
Probab=100.00 E-value=4.3e-57 Score=494.72 Aligned_cols=444 Identities=30% Similarity=0.488 Sum_probs=353.0
Q ss_pred CCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhc
Q psy11254 202 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYI 281 (741)
Q Consensus 202 l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 281 (741)
++...-++|+|+|||||||++++.|.+++.++.++.+ .+++..-.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc-----------------------------------~el~~~s~ 472 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDC-----------------------------------YELVAESA 472 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccH-----------------------------------HHHhhccc
Confidence 3444458999999999999999999999999988876 33444455
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHH-hccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 282 GESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN-QMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 282 G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~-~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+..+.++...|.+|....|+|||+-..|.++.+..+ +.|......+..++. +.-. .+..++.||+++|..+.+++
T Consensus 473 ~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~-~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 473 SHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFK-FSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred chhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhccccc-CCCCceEEEEeccccccCCH
Confidence 566677778999999999999999999999865533 667777777776665 2221 24578999999999999999
Q ss_pred cccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHH---HHhhhc--
Q psy11254 361 ALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLF---AIRSER-- 435 (741)
Q Consensus 361 al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~---a~~~~~-- 435 (741)
.+.+ .|-.+|.++.|++++|.++ ++++........++....++..+.||+-+++..+....... .+....
T Consensus 549 ~i~~--~f~~ei~~~~lse~qRl~i---Lq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~ 623 (953)
T KOG0736|consen 549 DIQS--LFLHEIEVPALSEEQRLEI---LQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLA 623 (953)
T ss_pred HHHH--hhhhhccCCCCCHHHHHHH---HHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccc
Confidence 8887 6777899999999999999 88888777777888899999999999999999887665222 222211
Q ss_pred ---------------cccchHhHHHHHHHhcccccccccCcchhccccccccccccccchhHHHHHHHhhcccccccccc
Q psy11254 436 ---------------EYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKL 500 (741)
Q Consensus 436 ---------------~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 500 (741)
..++++||.++..+......... +. ..-..+.|+|+. +..+.|.
T Consensus 624 g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai--------GA----PKIPnV~WdDVG---------GLeevK~ 682 (953)
T KOG0736|consen 624 GGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI--------GA----PKIPNVSWDDVG---------GLEEVKT 682 (953)
T ss_pred ccchhccccccccccceecHHHHHHHHHHHHHhhhhhc--------CC----CCCCccchhccc---------CHHHHHH
Confidence 34666777777665543322110 00 011234455431 1112344
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+.+.+++|+++|++|. .|+.+..|++||||||||||.+|||+|.++..+|++|.+++|++.|+|+||+++|++|++||
T Consensus 683 eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR 761 (953)
T KOG0736|consen 683 EILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERAR 761 (953)
T ss_pred HHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhh
Confidence 55678999999999996 47888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC--CCCCeEEEEeeCCCCCCCccccCCCCcceEEEc
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 658 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~--~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~ 658 (741)
..+||||||||+|+++++|+.+++++. .+.|+++|||.+|||+. +...|+||+|||||+.||||++||||||+.+|+
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyv 840 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYV 840 (953)
T ss_pred ccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEe
Confidence 999999999999999999998877654 68899999999999997 566899999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHhhcCccccCCCCccccccccc-ccccchHHHHHHHhhhhhh
Q psy11254 659 PLPN-EQARLEILKIHAGPIAKHGEIGDAATKWVLP-FTAGGFIYIATVSVIPELL 712 (741)
Q Consensus 659 ~~p~-~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~-~~s~gf~~~a~~~~~~~l~ 712 (741)
+.++ .+.+..||+...+++..+.+++-..+....+ ..+|+..|.--.+++-+.+
T Consensus 841 G~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 841 GPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred cCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHH
Confidence 7765 6778899999999999998888766555444 4566666654444444333
No 9
>KOG0651|consensus
Probab=100.00 E-value=5.8e-58 Score=456.42 Aligned_cols=378 Identities=73% Similarity=1.112 Sum_probs=364.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhH
Q psy11254 7 DEVRHKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDL 86 (741)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (741)
.+.|.+.++.|++.|+++.+...+++..++..+.+.+...+.+++++.+++.+|. ++++++...++
T Consensus 2 ~~~~~~al~~~r~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~------~gevlk~l~~~-------- 67 (388)
T KOG0651|consen 2 MAERNKALAEYRKPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQI------IGEVLKQLEDE-------- 67 (388)
T ss_pred chHHHHHHHHhhhhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCch------hHHHHhhcccc--------
Confidence 4578899999999999999999999999999999999999999999999999997 79999999998
Q ss_pred HhhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCC
Q psy11254 87 KALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG 166 (741)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (741)
+++||+++||.|+++|+.+.++..+++|.++.++.++.++++.+|.++| ++++|.++++.
T Consensus 68 -------------------~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~ 127 (388)
T KOG0651|consen 68 -------------------KFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPR 127 (388)
T ss_pred -------------------ceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCcc
Confidence 8899999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE 246 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~ 246 (741)
+++|+.+||+..++.+++|.+++|+.+|.+|..+|+.+|+|++||||||+|||.+++++|..++.+|..++.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s-------- 199 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS-------- 199 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
+.++++|.|+..+.+|+.|+.|..+.|||||+||||++++.+.+..++.|.+.
T Consensus 200 ---------------------------s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~drei 252 (388)
T KOG0651|consen 200 ---------------------------SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREI 252 (388)
T ss_pred ---------------------------hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHH
Confidence 67889999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHH
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~ 406 (741)
+++|++++++|++++..++|.+|+|||+++.|||+|+||||+|+.++.|.|++..|..| ++.|...+..+.++++++
T Consensus 253 qrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I---~Kih~~~i~~~Geid~ea 329 (388)
T KOG0651|consen 253 QRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGI---LKIHVQPIDFHGEIDDEA 329 (388)
T ss_pred HHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceee---EeeccccccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcccccc
Q psy11254 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKL 456 (741)
Q Consensus 407 la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~ 456 (741)
+.+++++|+|+|+.+.|++|++.+++..+..+-.+++.+++++....+..
T Consensus 330 ivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkl 379 (388)
T KOG0651|consen 330 ILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKKL 379 (388)
T ss_pred HHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887654443
No 10
>KOG0735|consensus
Probab=100.00 E-value=5e-55 Score=473.91 Aligned_cols=447 Identities=29% Similarity=0.441 Sum_probs=341.3
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCce----eeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcch
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFL----KVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGE 283 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~ 283 (741)
++|.||+|||||+|+++++..+..+.. .+++ +.+-.+-...
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-----------------------------------s~l~~~~~e~ 478 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-----------------------------------STLDGSSLEK 478 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-----------------------------------hhccchhHHH
Confidence 899999999999999999998754321 1111 1111112233
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC-C-CCCCCeEEEEeeCCCCCCCcc
Q psy11254 284 SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG-F-DSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 284 ~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~-~-~~~~~v~vI~at~~~~~ld~a 361 (741)
-++-++..|..|..+.|+|++||.+|.|++... ..++-|......+..+++++-. + ..+..+.+|++.+....+++.
T Consensus 479 iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 479 IQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 455667799999999999999999999998332 2334455555555666644321 1 123457899999999999999
Q ss_pred ccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh----hccc
Q psy11254 362 LLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRS----EREY 437 (741)
Q Consensus 362 l~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~----~~~~ 437 (741)
+-.+++|+.++.++.|+..+|.+|+..+-.+...+....+ ++-++..|+||...|+..++.+|...+... ....
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~d--Ld~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDD--LDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHH--HHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999984443333332223333 344899999999999999999988777622 1226
Q ss_pred cchHhHHHHHHHhcccccccccCcchhccccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHH
Q psy11254 438 VTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQ 517 (741)
Q Consensus 438 i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 517 (741)
++.++|.++++.+.+............ .+.++++... .+.+..+.+.+.||-++|.+|.
T Consensus 636 ltke~f~ksL~~F~P~aLR~ik~~k~t------------gi~w~digg~---------~~~k~~l~~~i~~P~kyp~if~ 694 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVPLALRGIKLVKST------------GIRWEDIGGL---------FEAKKVLEEVIEWPSKYPQIFA 694 (952)
T ss_pred chHHHHHHHHHhcChHHhhhccccccC------------CCCceecccH---------HHHHHHHHHHHhccccchHHHh
Confidence 888999999887655332211111000 0222222110 0112234567899999999999
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccC
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~ 597 (741)
+.+++.+.|+|||||||||||.+|.++|..++..|+++.+++++++|+|.|++++|.+|.+|+...||||||||+|++++
T Consensus 695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP 774 (952)
T KOG0735|consen 695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP 774 (952)
T ss_pred hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 598 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 598 ~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
+|+.+..+ ...|+++|+|++|||.++.++|+|+++|.||+.||||++||||+|+.++.|.|+..+|.+|++.....+
T Consensus 775 kRGhDsTG---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 775 KRGHDSTG---VTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred ccCCCCCC---chHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 99766544 346999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred cccCCCCcccccc----cccccccchHHHHHHHhhhhhhhcCC
Q psy11254 678 AKHGEIGDAATKW----VLPFTAGGFIYIATVSVIPELLEDTS 716 (741)
Q Consensus 678 ~~~~~~~~~a~~~----l~~~~s~gf~~~a~~~~~~~l~~~~~ 716 (741)
..+.+++-..+.. .......+..|.|-..++++++.+++
T Consensus 852 ~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 852 LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 5554444333322 22334456678888899999887754
No 11
>KOG0652|consensus
Probab=100.00 E-value=2.9e-54 Score=419.20 Aligned_cols=368 Identities=42% Similarity=0.693 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEEEEecCCCCeeEE
Q psy11254 40 ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVV 119 (741)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (741)
++.-...+|++.-+......|..|+ |+.+++.++-+-.++++ ++-+.+.|-.+.-+ --.++++++...++.
T Consensus 49 e~~~~~ekIkeN~EkIk~Nk~LPYL---V~NvvE~ld~~~~~~~e-----~sg~n~~ld~qrkg-kcaViktStRqt~fL 119 (424)
T KOG0652|consen 49 ELQAMKEKIKENTEKIKVNKQLPYL---VSNVVELLDMDPNDDEE-----DSGANIDLDSQRKG-KCAVIKTSTRQTYFL 119 (424)
T ss_pred HHHHHHHHHHhhHHHhhccccCchH---HhhHHHHhcCCcccchh-----ccCCcccccccccc-eeEEEecccceeeee
Confidence 4455555666666666666776665 58888888865333333 22334444444322 246788888888888
Q ss_pred eecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhh
Q psy11254 120 GCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQR 199 (741)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~ 199 (741)
.+..-++..+|+||+.|.++..++-+...+|.+.|+.+..|...+.|.-+|+|||||+++++++.|.+.+|..+++-|.+
T Consensus 120 PvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~ 199 (424)
T KOG0652|consen 120 PVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFEN 199 (424)
T ss_pred eeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhh
Q psy11254 200 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK 279 (741)
Q Consensus 200 ~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (741)
+|+.+|+|+++|||||||||.++|+.|...+.+|..+.+ .+++..
T Consensus 200 lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg-----------------------------------PQLVQM 244 (424)
T KOG0652|consen 200 LGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG-----------------------------------PQLVQM 244 (424)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc-----------------------------------hHHHhh
Confidence 999999999999999999999999999999988877765 788899
Q ss_pred hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 280 ~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|+|.+.+.+|++|+.|....|+||||||+|+|+.+|.....+.|++.+++++++|++++||.+...+.||++||+.+.+|
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccc
Q psy11254 360 PALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVT 439 (741)
Q Consensus 360 ~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~ 439 (741)
|+++|.||+|+.|+||.|+++.|..| +++|.+.|....+++++++++.|++|+|+..+++|-+|++.++|+....++
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarI---lQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~ 401 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARI---LQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVT 401 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHH---HHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccccc
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhcccc
Q psy11254 440 QEDFMKAVRKVSDNK 454 (741)
Q Consensus 440 ~~d~~~a~~~~~~~~ 454 (741)
.+||...+..+...+
T Consensus 402 heDfmegI~eVqakK 416 (424)
T KOG0652|consen 402 HEDFMEGILEVQAKK 416 (424)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999887765433
No 12
>KOG0729|consensus
Probab=100.00 E-value=5.6e-52 Score=404.35 Aligned_cols=301 Identities=53% Similarity=0.923 Sum_probs=288.8
Q ss_pred CeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHHHhhccCCCh
Q psy11254 115 PRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNP 194 (741)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~ 194 (741)
.+++|+...++....+..|.+|.++.+.+++.--+|+.+||.+..|..++.|+++|+|+||..++++.++|.+++|+.+|
T Consensus 121 akfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~p 200 (435)
T KOG0729|consen 121 AKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHP 200 (435)
T ss_pred HHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCH
Confidence 34445555677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCcc
Q psy11254 195 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSS 274 (741)
Q Consensus 195 ~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (741)
+-|-++|+.+|+|++||||||||||.++|++|+..++.|+++.+ +
T Consensus 201 erfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig-----------------------------------s 245 (435)
T KOG0729|consen 201 ERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG-----------------------------------S 245 (435)
T ss_pred HHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh-----------------------------------H
Confidence 99999999999999999999999999999999999999999987 7
Q ss_pred chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCC
Q psy11254 275 AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR 354 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~ 354 (741)
+++.+|+|++.+++|++|..|+....||||+||+|++++.|...+.+.|.+.+++++++++++++|+.++++.|+++||+
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 355 PDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 355 ~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
|+.+||+++||||+|+.++|.+|+.+.|..| +++|...|....++.++-+++++.+-+|++++++|.+|++.+++..
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i---~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHI---FKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCccccccee---EEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccccchHhHHHHHHHhccc
Q psy11254 435 REYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 435 ~~~i~~~d~~~a~~~~~~~ 453 (741)
+...+..||..|+.++...
T Consensus 403 rk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 403 RKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-50 Score=460.02 Aligned_cols=472 Identities=44% Similarity=0.659 Sum_probs=386.3
Q ss_pred ccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccc
Q psy11254 189 LPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (741)
+|...+..++..++.+++|++++||||+|||+++++++.. ...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~------------------------------- 49 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSIN------------------------------- 49 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccC-------------------------------
Confidence 4677889999999999999999999999999999999987 44331111
Q ss_pred cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEE
Q psy11254 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKM 348 (741)
Q Consensus 269 ~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~v 348 (741)
.....++|.|......+..|..|....|+++++||+|.+.+.+.. .......+++.+++..++++. ...+.+
T Consensus 50 ----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~ 121 (494)
T COG0464 50 ----GPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIV 121 (494)
T ss_pred ----cchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEE
Confidence 255667899999999999999999999999999999999998865 222334556667777777766 434778
Q ss_pred EEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy11254 349 IMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGL 428 (741)
Q Consensus 349 I~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~ 428 (741)
+..||++..+++++.++++|+..+.++.|+...+.++ +..+...+......+...++..+.+|.++++..+|+++.+
T Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~ 198 (494)
T COG0464 122 IGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI---LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAAL 198 (494)
T ss_pred EeecCCccccChhHhCccccceeeecCCCCHHHHHHH---HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999887 6666666666667889999999999999999999999988
Q ss_pred HHHhhh------ccccchHhHHHHHHHhcccccccccCcchhccccccccccccccchhHHHHHHHhhcccccccccccc
Q psy11254 429 FAIRSE------REYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDY 502 (741)
Q Consensus 429 ~a~~~~------~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 502 (741)
.+.++. ...++.+++..+++.+.+. ... ......+.+.++.. + ...+..+
T Consensus 199 ~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-------------~~~~~~v~~~digg-l--------~~~k~~l 254 (494)
T COG0464 199 RELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGV-------------LFEDEDVTLDDIGG-L--------EEAKEEL 254 (494)
T ss_pred HHHHhhhccCcccccccHHHHHHHHHhcCcc--ccc-------------ccCCCCcceehhhc-H--------HHHHHHH
Confidence 888775 2346677888887776543 000 00011122222110 0 1112334
Q ss_pred ccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhc
Q psy11254 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582 (741)
Q Consensus 503 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~ 582 (741)
++.+.+|+.+++.+...++.++.++||+||||||||++|+++|.+++.+|+.+.+++++++|+|+++++++.+|..|+..
T Consensus 255 ~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 255 KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKL 334 (494)
T ss_pred HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
+||||||||+|+++..|+...++. ..++++++|.+|+|++...+|+||+|||+|+.+|+|++||||||++|+||+||
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 999999999999999996554332 26899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccc--cCCCCcccccccccccccchHHHHHHHhhhhhhhcC-CCcccHHHHHHHHHH
Q psy11254 663 EQARLEILKIHAGPIAK--HGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDT-SPKQTVKEILALLLG 730 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~--~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~-~~~~s~~~i~~~l~g 730 (741)
.++|.+||+.++..... ..+++...+.......++..+.....+++...+.+. ....+.+++..++..
T Consensus 412 ~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 412 LEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 99999999999984433 234555555555666778888888778777777776 678999999988776
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=433.87 Aligned_cols=371 Identities=42% Similarity=0.703 Sum_probs=341.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhh
Q psy11254 11 HKTLQDYRKKL-TEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKAL 89 (741)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (741)
.+.+.++.+++ .+...++.+.+.+..+.+.+.+...+++++++.+++.|+. ++++++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------- 79 (398)
T PTZ00454 17 ERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLV------IGQFLEMIDSN----------- 79 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce------EEEEEEEEcCC-----------
Confidence 34444444444 5677788888888888888999999999999999999988 89999999988
Q ss_pred hhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCC
Q psy11254 90 QSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDIT 169 (741)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (741)
+.+++.++++++++++.+.++...+++|++|.++..+..++..+|...++.+..+..++.|+++
T Consensus 80 ----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~ 143 (398)
T PTZ00454 80 ----------------YGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVT 143 (398)
T ss_pred ----------------EEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCC
Confidence 8899999999999999999999999999999999999999999999999988888888999999
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
|+||||++++|++|++.+.+|+.++++|+.+|+.+++|++|+||||||||++++++|+.++..+..+.+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~----------- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG----------- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
+.+..+|.|+..+.++++|..|...+|+||||||+|+++.++.++.++.|.+.++.
T Consensus 213 ------------------------s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~ 268 (398)
T PTZ00454 213 ------------------------SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRI 268 (398)
T ss_pred ------------------------HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHH
Confidence 44557788999999999999999999999999999999998887777888899999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHH
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVK 409 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~ 409 (741)
+.+++..++++....++.||++||+++.+|++++|+||||..|+++.|+..+|..| +..+...+....++++..++.
T Consensus 269 l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~I---l~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 269 LLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI---FQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred HHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHH---HHHHHhcCCCCcccCHHHHHH
Confidence 99999999988777899999999999999999999999999999999999999998 777777777778899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 410 LSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 410 ~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
.++||+|+||.++|++|++.++++.+..++.+||.+|++.+..
T Consensus 346 ~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 346 RPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988754
No 15
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=427.08 Aligned_cols=372 Identities=42% Similarity=0.713 Sum_probs=337.9
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHh
Q psy11254 10 RHKTLQDYRK-KLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKA 88 (741)
Q Consensus 10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (741)
+++.++-.+. ++++...++++.-+.+..++.+.+.....+++++++++.|+. |+++++.++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---------- 117 (438)
T PTZ00361 54 TKCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLS------VGTLEEIIDEN---------- 117 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcE------EEEEEEEeCCC----------
Confidence 4444444433 445556666666666655567788888999999999999998 99999999988
Q ss_pred hhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCC
Q psy11254 89 LQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDI 168 (741)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (741)
+++|+.++++++++++.+.++...|+||++|.++..+..+++.+|+..|+.++.|..++.|++
T Consensus 118 -----------------~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~ 180 (438)
T PTZ00361 118 -----------------HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLE 180 (438)
T ss_pred -----------------eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHH
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~ 248 (741)
+|+||||+++++++|++.+.+|+.++++|+.+++.+++|++|+||||||||+++|++|+.++.+|..+.+
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~---------- 250 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG---------- 250 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999988887764
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
++++..|.|+..+.++..|..|..+.|+||||||+|+++.++....++.+.+.++
T Consensus 251 -------------------------seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr 305 (438)
T PTZ00361 251 -------------------------SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQR 305 (438)
T ss_pred -------------------------chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHH
Confidence 4556788999999999999999999999999999999999887777778888899
Q ss_pred HHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHH
Q psy11254 329 TLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVV 408 (741)
Q Consensus 329 ~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la 408 (741)
.+.++|..++++....++.||+|||+++.+|++++|+||||+.|+|+.|+..+|.+| +..+...+....++++..++
T Consensus 306 ~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~I---l~~~~~k~~l~~dvdl~~la 382 (438)
T PTZ00361 306 TMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRI---FEIHTSKMTLAEDVDLEEFI 382 (438)
T ss_pred HHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHH---HHHHHhcCCCCcCcCHHHHH
Confidence 999999999988777899999999999999999999999999999999999999999 77787788777889999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 409 KLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 409 ~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
..+++|+|+|+.++|++|++.|+++.+..++.+|+..|++++..
T Consensus 383 ~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 383 MAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988754
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=397.36 Aligned_cols=232 Identities=54% Similarity=0.876 Sum_probs=220.9
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+.+.+.+|+.+|++|..+|+.||+|+|||||||||||.||+|+|+..++.|+.+.+|+|+.+|+|+..+.+|++|+.|+
T Consensus 162 EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAr 241 (406)
T COG1222 162 EIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAR 241 (406)
T ss_pred HHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
.++||||||||||+++.+|...+++++++++|++.+||++||||++.++|-||+||||++.||||++||||||++|+||+
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
||.+.|.+||+.|.+.+....+++...+.......+|+.+.....++=.-.+.+.+...+.++...+..-|+
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 999999999999999999999999999988888889988888888887778888899999999888776554
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.2e-44 Score=396.96 Aligned_cols=362 Identities=50% Similarity=0.851 Sum_probs=331.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhcccccccccc
Q psy11254 22 TEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSV 101 (741)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
.+....+.+++++...++.+.+...+++++++.+...+.. ++.+++.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~----------------------- 65 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLI------VATVLEVLDDG----------------------- 65 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce------EEEEEEEeCCC-----------------------
Confidence 5666777788888888888888889999999999887776 79999999988
Q ss_pred ccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHH
Q psy11254 102 SKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIR 181 (741)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~ 181 (741)
+++++.+++..+++++...++...+++|.+|.++.....+...+|...++.++.+...+.|+++|++|||++++++
T Consensus 66 ----~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~ 141 (389)
T PRK03992 66 ----RVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIR 141 (389)
T ss_pred ----eEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHH
Confidence 7799999999999999888999999999999999999999999999999988889899999999999999999999
Q ss_pred HHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccc
Q psy11254 182 ELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRST 261 (741)
Q Consensus 182 ~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (741)
+|++.+.+|+.+++.|+.+|+.+++|++|+||||||||++|+++|..++..|..+.+
T Consensus 142 ~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~----------------------- 198 (389)
T PRK03992 142 EVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----------------------- 198 (389)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh-----------------------
Confidence 999999999999999999999999999999999999999999999999988887765
Q ss_pred ccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCC
Q psy11254 262 HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341 (741)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~ 341 (741)
+.+...|.|+..+.++.+|..|..+.|+||||||+|+++..+.+...+.+.+.++.+.+++..++++.
T Consensus 199 ------------~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ------------SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ------------HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 45567789999999999999999999999999999999998877666778888999999999999887
Q ss_pred CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHH
Q psy11254 342 SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRN 421 (741)
Q Consensus 342 ~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~ 421 (741)
..+++.||+|||+++.+|++++|+||||..|+++.|+..+|.+| ++.+...+....++++..++..++||+|+|+.+
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~I---l~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEI---LKIHTRKMNLADDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHH---HHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 77899999999999999999999999999999999999999999 777777777777889999999999999999999
Q ss_pred HHHHHHHHHHhhhccccchHhHHHHHHHhcccc
Q psy11254 422 VCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454 (741)
Q Consensus 422 l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 454 (741)
+|++|++.+++.....++.+||.+|+..+.+..
T Consensus 344 l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 344 ICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 999999999999888999999999999876543
No 18
>KOG0730|consensus
Probab=100.00 E-value=1.2e-45 Score=402.37 Aligned_cols=251 Identities=46% Similarity=0.786 Sum_probs=233.9
Q ss_pred ccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc
Q psy11254 161 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL 240 (741)
Q Consensus 161 ~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~ 240 (741)
..-+.++++|+||||++++|+++++.|.+|..+++.|..+|+++|+||+|||||||||||+||++|++.+.+|..+.+
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg-- 501 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG-- 501 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC--
Confidence 335678999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+++++|+|++++.+++.|.+|+...||||||||||+++..|++..+
T Consensus 502 ---------------------------------pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~ 548 (693)
T KOG0730|consen 502 ---------------------------------PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS 548 (693)
T ss_pred ---------------------------------HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc
Confidence 77889999999999999999999999999999999999999974333
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG 400 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~ 400 (741)
..+.+.|.++|++|||+....+|.||++||+|+.||+|++||||||+.|++|+||...|.+| ++.+...+....
T Consensus 549 ---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~I---lk~~~kkmp~~~ 622 (693)
T KOG0730|consen 549 ---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEI---LKQCAKKMPFSE 622 (693)
T ss_pred ---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHH---HHHHHhcCCCCc
Confidence 45678999999999999988999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhc--cccchHhHHHHHHHhcc
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSER--EYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~--~~i~~~d~~~a~~~~~~ 452 (741)
++|+..+++.|+||+|||+..+|++|+..++++.- ..+..++|.++++...+
T Consensus 623 ~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 623 DVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred cccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998754 46778888888876544
No 19
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.4e-43 Score=385.45 Aligned_cols=358 Identities=52% Similarity=0.873 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhcccccccccc
Q psy11254 22 TEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSV 101 (741)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
.+...++++++.++.+.+.+.+..++++++++++...+.. ++++++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------------------- 56 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLI------VGTVLEVLDDN----------------------- 56 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeE------EEEEEEEecCC-----------------------
Confidence 3456667777778888888888888899999999988888 89999999988
Q ss_pred ccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHH
Q psy11254 102 SKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIR 181 (741)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~ 181 (741)
+.+++.++++++++++...++...+++|.++.++.....+...+|...++.+..+...+.|+++|++|||++++++
T Consensus 57 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~ 132 (364)
T TIGR01242 57 ----RVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIR 132 (364)
T ss_pred ----EEEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHH
Confidence 7789999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccc
Q psy11254 182 ELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRST 261 (741)
Q Consensus 182 ~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (741)
+|++.+.+|+.+++.|..+|+.+++|++|+||||||||++++++|+.++..+..+.+
T Consensus 133 ~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~----------------------- 189 (364)
T TIGR01242 133 EIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----------------------- 189 (364)
T ss_pred HHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch-----------------------
Confidence 999999999999999999999999999999999999999999999999988877653
Q ss_pred ccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCC
Q psy11254 262 HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341 (741)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~ 341 (741)
..+...|.|+....++..|..|....|+||||||+|.++..+.+...+.+++.++.+.+++..++++.
T Consensus 190 ------------~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ------------SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ------------HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 34456788888889999999999999999999999999988877777789999999999999999877
Q ss_pred CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHH
Q psy11254 342 SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRN 421 (741)
Q Consensus 342 ~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~ 421 (741)
..+++.||+|||+++.+|++++|+||||+.++++.|+..+|.+| +..+...+....++++..++..+.||+|+|+.+
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~I---l~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI---LKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHH---HHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 67899999999999999999999999999999999999999999 777777776667789999999999999999999
Q ss_pred HHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 422 VCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 422 l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
+|++|++.++++.+..++.+|+..|+..+
T Consensus 335 l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 335 ICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999998754
No 20
>KOG0733|consensus
Probab=100.00 E-value=3.5e-44 Score=384.45 Aligned_cols=236 Identities=41% Similarity=0.715 Sum_probs=218.1
Q ss_pred cccccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 158 YNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 158 ~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
.......+|+++|+|||||+++..++..+|.+|..+|++|+.+|++.|.|+||+||||||||.|||++|++.+.+|+.|.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 34445568999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
| .+++++|+|++++.||++|.+|+.+.|||||+||+|+|++.|+.
T Consensus 578 G-----------------------------------PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 578 G-----------------------------------PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred C-----------------------------------HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 7 78889999999999999999999999999999999999999976
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC--C
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG--P 395 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~--~ 395 (741)
..+ ....+.+.++|.+|||...+.+|.||+|||+||.+|||++||||||+.+++++|+..+|.+| ++.++. .
T Consensus 623 ~~s---~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I---LK~~tkn~k 696 (802)
T KOG0733|consen 623 EGS---SVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI---LKTITKNTK 696 (802)
T ss_pred CCc---hhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHH---HHHHhccCC
Confidence 554 34568899999999999899999999999999999999999999999999999999999999 666666 5
Q ss_pred CcccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhh
Q psy11254 396 IAKHGEIDYEAVVKLSD--SFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 396 ~~~~~~~~~~~la~~t~--g~~gadi~~l~~~A~~~a~~~~ 434 (741)
.....++|++.++..+. ||+|||+..+|++|.+.++++.
T Consensus 697 ~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 697 PPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred CCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 56678999999999876 9999999999999999998764
No 21
>KOG0741|consensus
Probab=100.00 E-value=2.5e-42 Score=364.37 Aligned_cols=432 Identities=32% Similarity=0.520 Sum_probs=315.7
Q ss_pred CCCCCccc--ccChHHHHHHH-HHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 165 PGDITYSA--IGGLSEQIREL-REVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 165 ~~~~~~~~--i~Gl~~~k~~i-~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
.|++.|.+ ||||+.....| +..+.-....|++.+.+|+.--+|++||||||||||.+||-|...++..-.++.-
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN--- 289 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN--- 289 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC---
Confidence 35556655 59999998887 5566777788999999999999999999999999999999999999876555532
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh--------cCCeEEEecccccccc
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN--------HQPCIIFMDEIDAIGG 313 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~--------~~P~ILllDEid~l~~ 313 (741)
.++..++|+|+++..+|.+|+-|.. ..=-||++||||++|.
T Consensus 290 -------------------------------GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK 338 (744)
T KOG0741|consen 290 -------------------------------GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK 338 (744)
T ss_pred -------------------------------cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH
Confidence 2677899999999999999999864 2335999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhcc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHA 393 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~ 393 (741)
.|++...+. -....++.++|..|||.+...++.||.-||++|.+|+||+|||||+..+++.+||+..|.+| +++|+
T Consensus 339 qRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQI---l~IHT 414 (744)
T KOG0741|consen 339 QRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQI---LKIHT 414 (744)
T ss_pred hcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEE---EEhhh
Confidence 886543221 12235678999999999999999999999999999999999999999999999999999999 88898
Q ss_pred CCCccc----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhc---------------cccchHhHHHHHHHhcccc
Q psy11254 394 GPIAKH----GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSER---------------EYVTQEDFMKAVRKVSDNK 454 (741)
Q Consensus 394 ~~~~~~----~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~---------------~~i~~~d~~~a~~~~~~~~ 454 (741)
..|..+ .++|+.++|.+|.+|+||++..+++.|...|+.+.- -.++.+||..|+..+.+..
T Consensus 415 ~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 415 KRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred hhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 877654 689999999999999999999999999888776532 1356677777776655433
Q ss_pred cccccCcchhccccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHH-H---HhcCCCCCCceEEE
Q psy11254 455 KLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPEL-F---QRVGITPPKGCLLY 530 (741)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~ll~ 530 (741)
-. +.+++..-+.. . ...+.+.+.--+.+-.+ . +.-...+-..+||.
T Consensus 495 G~----------------------see~l~~~~~~----G----mi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~ 544 (744)
T KOG0741|consen 495 GI----------------------SEEDLERFVMN----G----MINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLE 544 (744)
T ss_pred CC----------------------CHHHHHHHHhC----C----ceeecccHHHHHhhHHHHHHHhhccccCcceEEEEe
Confidence 21 11111111100 0 00000000000111111 1 11123444579999
Q ss_pred cCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHH--HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccH
Q psy11254 531 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESA--RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 608 (741)
Q Consensus 531 G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~--~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~ 608 (741)
||||+|||+||..+|...+.||+.+.+++-.-.+ .|++ ..++.+|+.|....-+||++|+++.+..-- ...+
T Consensus 545 Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-----pIGP 618 (744)
T KOG0741|consen 545 GPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-----PIGP 618 (744)
T ss_pred cCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc-----ccCc
Confidence 9999999999999999999999999777544333 2443 568999999999988999999999886221 1111
Q ss_pred HH-HHHHHHHHHHccCCCCCC-CeEEEEeeCCCCCCC-ccccCCCCcceEEEcCCCCH-HHHHHHHHH
Q psy11254 609 EI-QRTLMELLNQMDGFDSLG-QVKMIMATNRPDTLD-PALLRPGRLDRKIEIPLPNE-QARLEILKI 672 (741)
Q Consensus 609 ~~-~~~l~~lL~~~~g~~~~~-~v~vi~tTn~~~~ld-~al~rpgR~d~~i~~~~p~~-~~r~~i~~~ 672 (741)
.. ..++..|+-.+..-++.+ +.+|++||.+.+.+. -.++. -|+..|++|..+. ++..+++..
T Consensus 619 RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 619 RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 22 233333444444445554 466777777766554 35555 7999999999887 677777663
No 22
>KOG0736|consensus
Probab=100.00 E-value=2.1e-40 Score=363.80 Aligned_cols=234 Identities=39% Similarity=0.687 Sum_probs=211.0
Q ss_pred ccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc
Q psy11254 161 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL 240 (741)
Q Consensus 161 ~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~ 240 (741)
...+.|+|+|+|||||+++|.+|.+.|.+|+.++++|.. |+....|++||||||||||.+||++|.++..+|.+|.|
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKG-- 738 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKG-- 738 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecC--
Confidence 455689999999999999999999999999999999975 88888999999999999999999999999999999977
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.++++.|+|++++.||+.|++|+...|||||+||+|+++++|+..+.
T Consensus 739 ---------------------------------PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 739 ---------------------------------PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred ---------------------------------HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC
Confidence 78889999999999999999999999999999999999999976554
Q ss_pred CccHHHHHHHHHHHHhccCCC--CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHH-HHhccccchhccCCCc
Q psy11254 321 SADREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA-RLAHTWPISIHAGPIA 397 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~--~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~-r~~i~~~l~~~~~~~~ 397 (741)
+.. ..-|++.++|.+||++. ...+|.||+|||+||.|||+++||||||+-++++.++..+ +..+ ++..++.+.
T Consensus 786 SGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~v---L~AlTrkFk 861 (953)
T KOG0736|consen 786 SGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRV---LEALTRKFK 861 (953)
T ss_pred ccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHH---HHHHHHHcc
Confidence 432 24578899999999987 4578999999999999999999999999999998877655 4445 777888899
Q ss_pred ccCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 398 KHGEIDYEAVVKLS-DSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 398 ~~~~~~~~~la~~t-~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
...++++.++|+.+ ..|+|||+-++|..|.+.|+++.
T Consensus 862 LdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 862 LDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred CCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999988 48999999999999999998764
No 23
>KOG0734|consensus
Probab=100.00 E-value=5.7e-40 Score=346.92 Aligned_cols=247 Identities=38% Similarity=0.639 Sum_probs=228.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
...+++|+|+-|+++.|+++.|.+.+ +.+|+-|..+|=..|+||+|+||||||||.|||++||+.+.+|...++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG----- 370 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG----- 370 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc-----
Confidence 34589999999999999999999998 889999999999999999999999999999999999999999988887
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+++-..|+|.+.++||++|+.|+...||||||||||+++++|.....+
T Consensus 371 ------------------------------SEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-- 418 (752)
T KOG0734|consen 371 ------------------------------SEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-- 418 (752)
T ss_pred ------------------------------cchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH--
Confidence 444456899999999999999999999999999999999998543222
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
..+.+|.++|.+||||..+.+|.||++||.|+.||+||.||||||++|.+|.||...|.+| +..|........++|
T Consensus 419 -y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eI---L~~yl~ki~~~~~VD 494 (752)
T KOG0734|consen 419 -YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEI---LKLYLSKIPLDEDVD 494 (752)
T ss_pred -HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHH---HHHHHhcCCcccCCC
Confidence 6788999999999999999999999999999999999999999999999999999999999 999999999889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
..-+|+=|.||+|||+.+++..|+..|.......+++.+++.+..++.-
T Consensus 495 ~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 495 PKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred HhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheee
Confidence 9999999999999999999999999999888899999999988776643
No 24
>KOG0728|consensus
Probab=100.00 E-value=7.8e-40 Score=316.88 Aligned_cols=232 Identities=50% Similarity=0.800 Sum_probs=209.8
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+++.+.+|.++|++|..+|+..|+|++||||||||||.+|+++|......|+.+++++++.+|+|+..+.+|.+|-.||
T Consensus 158 eIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar 237 (404)
T KOG0728|consen 158 EIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred HHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
.++|+|+|+||||+++..|..+++++|.+++++..+||+++||++...++-||++|||.+.+|||++||||+|+.|+||+
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+.++|.+|++.|.+.+.....++-..+..-.+..+|+.....-.++=.=.+.+.+...++++.+++..-|.
T Consensus 318 p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 318 PNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred CCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999887766666666666666777776666555555555667777889999988876553
No 25
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-41 Score=370.16 Aligned_cols=356 Identities=23% Similarity=0.324 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchh------hH
Q psy11254 16 DYRKKLTEHAEVEGRLREMREQLK---ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSEN------DL 86 (741)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 86 (741)
+++|++||+.++.+|++.+...+. ++.+++++++++|++.++++||+||| +||+|+|++|||++++ ++
T Consensus 179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL---~EQlKaIqkELG~~~d~~~e~~~~ 255 (782)
T COG0466 179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYL---REQLKAIQKELGEDDDDKDEVEEL 255 (782)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccchhHHHHH
Confidence 568999999999999999999888 77789999999999999999999999 9999999999998753 44
Q ss_pred HhhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCC
Q psy11254 87 KALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG 166 (741)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (741)
++ .++....|+++ +.....++++.+.+.+++++++++|+|.+|+..+||.....+..
T Consensus 256 ~~-------------------kie~~~~p~ev----k~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~ 312 (782)
T COG0466 256 RE-------------------KIEKLKLPKEA----KEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKL 312 (782)
T ss_pred HH-------------------HHhhcCCCHHH----HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhh
Confidence 44 67778889888 77778899999999999999999999999999999998777654
Q ss_pred C------CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 167 D------ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 167 ~------~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
| +.-.|++||+++|++|.|++++....+. -+| +||+||||+|||+|+++||..++..|++++
T Consensus 313 Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~---------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s- 382 (782)
T COG0466 313 DLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK---------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS- 382 (782)
T ss_pred hHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc---------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-
Confidence 4 4557899999999999999997544432 145 789999999999999999999999999998
Q ss_pred ccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 239 SLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
+++..|.+++.||+ ++|+|.++.++.+.+..|...+| |++|||||+++++..++
T Consensus 383 ---LGGvrDEAEIRGHR----------------------RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD 436 (782)
T COG0466 383 ---LGGVRDEAEIRGHR----------------------RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD 436 (782)
T ss_pred ---cCccccHHHhcccc----------------------ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC
Confidence 67888999999997 68999999999999999999999 99999999999876655
Q ss_pred CCC-----ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhcc
Q psy11254 319 GTS-----ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHA 393 (741)
Q Consensus 319 ~~~-----lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~ 393 (741)
+++ +||+++..|.+++-+++- ..++|.||+|+|..+.++.+|+. |+ ..|+++.+.+.+..+| .+.|.
T Consensus 437 PaSALLEVLDPEQN~~F~DhYLev~y--DLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~I---Ak~~L 508 (782)
T COG0466 437 PASALLEVLDPEQNNTFSDHYLEVPY--DLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEI---AKRHL 508 (782)
T ss_pred hHHHHHhhcCHhhcCchhhccccCcc--chhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHH---HHHhc
Confidence 443 399999999999877762 36899999999999999999988 77 4799999999999988 55554
Q ss_pred CCCccc-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHh
Q psy11254 394 GPIAKH-GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442 (741)
Q Consensus 394 ~~~~~~-~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d 442 (741)
-+.... .++.... ...++..--.-|+.|.++|+.+.+++.-..+.+..
T Consensus 509 iPk~~~~~gL~~~e-l~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~ 557 (782)
T COG0466 509 IPKQLKEHGLKKGE-LTITDEAIKDIIRYYTREAGVRNLEREIAKICRKA 557 (782)
T ss_pred chHHHHHcCCCccc-eeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Confidence 433221 1111111 11222223345778889999988877665554443
No 26
>KOG0738|consensus
Probab=100.00 E-value=3.2e-38 Score=323.58 Aligned_cols=237 Identities=39% Similarity=0.635 Sum_probs=211.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
..|++.|+||.||++.|+-|+|.|.+|+.-|+.|+++ ..+.+|++++||||||||+|||++|.+.+.+|..|+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs----- 278 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS----- 278 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech-----
Confidence 4678999999999999999999999999999999986 4888999999999999999999999999999999986
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+.++++|-|++++.||.+|..|+.+.|++|||||||+||++|++.+ -.
T Consensus 279 ------------------------------stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~--EH 326 (491)
T KOG0738|consen 279 ------------------------------STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS--EH 326 (491)
T ss_pred ------------------------------hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc--ch
Confidence 6778999999999999999999999999999999999999996553 34
Q ss_pred HHHHHHHHHHHHhccCCCCC-CC---eEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc
Q psy11254 324 REIQRTLMELLNQMDGFDSL-GQ---VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~-~~---v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~ 399 (741)
...++.-.++|-+|||.... .+ |.|+++||-|++||+|++| ||++.|++|+|+.++|... +....+.....
T Consensus 327 EaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~L---i~~~l~~~~~~ 401 (491)
T KOG0738|consen 327 EASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSAL---IKILLRSVELD 401 (491)
T ss_pred hHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHH---HHHhhccccCC
Confidence 45567778999999986432 33 7888899999999999999 9999999999999999988 77777788888
Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhH
Q psy11254 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDF 443 (741)
Q Consensus 400 ~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~ 443 (741)
.+++++.+++.++||+|+||.++|++|.+.++|+.-..++.+.+
T Consensus 402 ~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei 445 (491)
T KOG0738|consen 402 DPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREI 445 (491)
T ss_pred CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHh
Confidence 89999999999999999999999999999999876555554443
No 27
>KOG0727|consensus
Probab=100.00 E-value=1.1e-38 Score=309.30 Aligned_cols=229 Identities=45% Similarity=0.729 Sum_probs=191.7
Q ss_pred cccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHH
Q psy11254 500 LDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579 (741)
Q Consensus 500 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a 579 (741)
..+.+.+.+|+.+.+++++.|+.||+|+++|||||||||+|++++|+.....|+.+.+++++.+|+|+..+.+|++|..|
T Consensus 165 qeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla 244 (408)
T KOG0727|consen 165 QEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 244 (408)
T ss_pred HHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcC
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 659 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~ 659 (741)
+..+|+|+||||+|++..+|+....++++++++++.+||++|||++...+|-||++||+.+.+|||++||||+|++|+||
T Consensus 245 kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefp 324 (408)
T KOG0727|consen 245 KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 324 (408)
T ss_pred hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 660 LPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 660 ~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
+||..+++-+|......+....+++-...-..-...+++.+..-..++=.....+++-....++++.+-
T Consensus 325 lpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 325 LPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred CCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 999999999999888777665555443333222233443332222222222223344445555555443
No 28
>KOG0729|consensus
Probab=100.00 E-value=1.3e-38 Score=310.93 Aligned_cols=226 Identities=52% Similarity=0.868 Sum_probs=203.0
Q ss_pred ccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhc
Q psy11254 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582 (741)
Q Consensus 503 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~ 582 (741)
.+.+..|+.+|+-|-++|+.||+|+++|||||||||.+|+++|+..+.-|+.+-+|+|+.+|+|+..+.+|.+|+.|+..
T Consensus 190 revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 190 REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
..||+||||+|++++.|+..+.+.++++++...++++++||+++.+++-|+++||+|+.+|||++||||+|++++|.+||
T Consensus 270 kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpd 349 (435)
T KOG0729|consen 270 KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 349 (435)
T ss_pred ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 663 EQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
.+.|.+||+.|.+.++-+.++.+..+..+.+-..|+.+...-.++=.=.+...+...+-++.+.+.
T Consensus 350 legrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 350 LEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred ccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 999999999999999988899999888888887777655544444333344444444444444333
No 29
>KOG0726|consensus
Probab=100.00 E-value=1.6e-38 Score=313.89 Aligned_cols=232 Identities=47% Similarity=0.782 Sum_probs=200.6
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+++.+.+|+.+|++|..+|+.||+|++|||+||||||.||+++|+...+.|+.+.+++|+.+|.|+..+.+|++|+.|.
T Consensus 196 EiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~ 275 (440)
T KOG0726|consen 196 EIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE 275 (440)
T ss_pred HHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
.++|+|+||||||+++.+|....+++.+++++...+||+++|||++.++|-||+|||+.+.+|||++||||+|+.|+||+
T Consensus 276 e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~ 355 (440)
T KOG0726|consen 276 EHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355 (440)
T ss_pred hcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCC
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
||...+..||..|...+....+++-..+-....-.+|+.+...-.++=--.+.+.+.+.+.++...+..-|+
T Consensus 356 pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 356 PDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred CchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999999999998887777776655544444444444332222222222344556667776666555443
No 30
>KOG0731|consensus
Probab=100.00 E-value=1.5e-37 Score=349.56 Aligned_cols=252 Identities=40% Similarity=0.696 Sum_probs=233.2
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
+....++|.|+.|+++.|++|.|++.+ +.+|+.|+++|..+|+|++|+||||||||.|||++||+.+.+|..+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG---- 377 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG---- 377 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeech----
Confidence 344569999999999999999999998 899999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC-CCCC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS-EGTS 321 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~-p~~~ 321 (741)
++++..+.|.+..++|++|..|+.+.|||+|+||||+++..|.+ ...+
T Consensus 378 -------------------------------SEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~ 426 (774)
T KOG0731|consen 378 -------------------------------SEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGG 426 (774)
T ss_pred -------------------------------HHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCC
Confidence 67778889999999999999999999999999999999999953 2335
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc-C
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-G 400 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~-~ 400 (741)
.+.+....|.++|-+||++....+|.|+++||+++.+|++++||||||+.|.++.|+..+|..| +..|....... .
T Consensus 427 ~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i---~~~h~~~~~~~~e 503 (774)
T KOG0731|consen 427 GQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASI---LKVHLRKKKLDDE 503 (774)
T ss_pred CChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHH---HHHHhhccCCCcc
Confidence 5667778999999999999988899999999999999999999999999999999999999999 89998877764 7
Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
++++..++..|.||+|+||.++|.+|+..+.+.....++..++..+++++...
T Consensus 504 ~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 504 DVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999876554
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.4e-35 Score=328.75 Aligned_cols=360 Identities=31% Similarity=0.476 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEee-cccCc----------------ccchhhH
Q psy11254 24 HAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKE-LTKQY----------------DKSENDL 86 (741)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~ 86 (741)
...+.+|..++.+.+++...+..+++++++++.+.+.. .++.++. .+..- .-+-+++
T Consensus 10 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~l 83 (512)
T TIGR03689 10 NSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPST------YGTFLQTAIDDETAEVFTAGRRMRVTVSPNVNAAEL 83 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------eEEEEEeccCCCeEEEEeCCceEEEEeCCCCCHHHC
Confidence 34456777778888888888889999999999999988 6888876 32210 0000122
Q ss_pred Hhh-----------------hhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcC
Q psy11254 87 KAL-----------------QSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYL 149 (741)
Q Consensus 87 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (741)
+.. ...|++.........-+++++.++++++++.+...+...++++|+++.++.........+
T Consensus 84 ~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (512)
T TIGR03689 84 VPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAV 163 (512)
T ss_pred CCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcC
Confidence 221 223333333344444578999999999999999999999999999999998877766666
Q ss_pred CCccCccccccccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc
Q psy11254 150 PREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l 229 (741)
|... ...+..++.|+++|+||||+++++++|++.+.+|+.++++|...++.+++|++||||||||||+++|++|+.+
T Consensus 164 ~~~~---~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 164 PKAE---VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CHhH---HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 6431 2233456788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc----CCeEEEe
Q psy11254 230 DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH----QPCIIFM 305 (741)
Q Consensus 230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~----~P~ILll 305 (741)
+........ .....+....++++++|.|+.++.++.+|..|... .|+||||
T Consensus 241 ~~~i~~~~~-------------------------~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 241 AQRIGAETG-------------------------DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred ccccccccC-------------------------CceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 654321000 00001111225667789999999999999988764 7999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
||+|+++.+|+... +.|. ..+.+.++|..|+++...+++.||+|||+++.||++++||||||.+|+|+.|+.++|.+|
T Consensus 296 DEiD~L~~~R~~~~-s~d~-e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~I 373 (512)
T TIGR03689 296 DEMDSIFRTRGSGV-SSDV-ETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADI 373 (512)
T ss_pred ehhhhhhcccCCCc-cchH-HHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHH
Confidence 99999998875322 2232 356678999999988777899999999999999999999999999999999999999998
Q ss_pred cccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHH
Q psy11254 386 TWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAG 427 (741)
Q Consensus 386 ~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~ 427 (741)
+..+..... .+........|++++++..+|+++.
T Consensus 374 ---l~~~l~~~l-----~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 374 ---FSKYLTDSL-----PLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ---HHHHhhccC-----CchHHHHHhcCCCHHHHHHHHHHHH
Confidence 555533211 1112233356666666666666653
No 32
>KOG0734|consensus
Probab=100.00 E-value=2.1e-37 Score=327.56 Aligned_cols=220 Identities=38% Similarity=0.576 Sum_probs=205.3
Q ss_pred CCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
+++|..|.++|-+-|+|+||+||||||||.||+++|++.+.||+..+++++-..|+|...+++|++|+.|+..+||||||
T Consensus 323 LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFI 402 (752)
T KOG0734|consen 323 LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFI 402 (752)
T ss_pred hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
||+|+++++|.....+ +...+++|||-+|||+..+.+|+||++||.|+.+|+|+.||||||++|.+|.||...|.+|
T Consensus 403 DEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eI 479 (752)
T KOG0734|consen 403 DEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEI 479 (752)
T ss_pred echhhhcccCCccHHH---HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHH
Confidence 9999999999654432 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+.|+..+..+.+++...+..-.+..+|+...+-+-.++-..+.+....++++|++.+-.-|+
T Consensus 480 L~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 480 LKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRIL 542 (752)
T ss_pred HHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhee
Confidence 999999998888899888888888889998888888888888888888999999998766664
No 33
>KOG0735|consensus
Probab=100.00 E-value=6.6e-37 Score=333.18 Aligned_cols=230 Identities=40% Similarity=0.710 Sum_probs=213.7
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
....++.|.|||||.++|+-+.+.+.+|-..|.+|.+..++.+.|++||||||||||.|+.++|...+..|+.|.|
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG---- 734 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG---- 734 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecC----
Confidence 3445699999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
.++.++|+|.+++.+|++|.+|...+|||||+||+|+++++|+.+..+.
T Consensus 735 -------------------------------PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV 783 (952)
T KOG0735|consen 735 -------------------------------PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV 783 (952)
T ss_pred -------------------------------HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc
Confidence 7888999999999999999999999999999999999999998877776
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~ 402 (741)
.. +.+.++|.+|||..+..||.|+++|.+||.+|||++||||+|+.++-+.|+..+|.+| +...........++
T Consensus 784 TD---RVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~i---l~~ls~s~~~~~~v 857 (952)
T KOG0735|consen 784 TD---RVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEI---LQVLSNSLLKDTDV 857 (952)
T ss_pred hH---HHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHH---HHHHhhccCCcccc
Confidence 43 6778999999998889999999999999999999999999999999999999999999 66666667777899
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
|++.++..|+||+|||+..++..|.+.++++
T Consensus 858 dl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 858 DLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred chHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887754
No 34
>KOG2004|consensus
Probab=100.00 E-value=1.1e-38 Score=347.81 Aligned_cols=367 Identities=23% Similarity=0.320 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhh
Q psy11254 15 QDYRKKLTEHAEVEGRLREMREQLK---ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQS 91 (741)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (741)
..+.|++|+..++..||+..++.++ +..+++.++.++++++.+..+++|+| +||+++|++|||.++|+..+.
T Consensus 265 ~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL---~eQlk~IKkeLg~e~Ddkd~~-- 339 (906)
T KOG2004|consen 265 FHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLL---REQLKAIKKELGIEKDDKDAL-- 339 (906)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHH---HHHHHHHHHhhCCCccchhhH--
Confidence 3457889999999999999999998 88999999999999999999999998 999999999999776533220
Q ss_pred ccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCC----
Q psy11254 92 VGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGD---- 167 (741)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 167 (741)
...++-.++....|+++ .++..+++++...+..+++++++.++|.+|+..+||+..+.+..+
T Consensus 340 ----------~~~~~er~~~~~~P~~v----~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~A 405 (906)
T KOG2004|consen 340 ----------VEKFRERIKSLKMPDHV----LKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARA 405 (906)
T ss_pred ----------HHHHHHHhhhccCcHHH----HHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHH
Confidence 01112255557788887 666778999999999999999999999999999999998877543
Q ss_pred --CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 168 --ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 168 --~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.-.|++||+++|++|.|++.+...+..+ +| +||+||||+|||+++|+||..+++.|.+++ ++
T Consensus 406 k~iLdeDHYgm~dVKeRILEfiAV~kLrgs~---------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfS----vG 472 (906)
T KOG2004|consen 406 KEILDEDHYGMEDVKERILEFIAVGKLRGSV---------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFS----VG 472 (906)
T ss_pred HHhhcccccchHHHHHHHHHHHHHHhhcccC---------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEe----cc
Confidence 44578999999999999999986554332 34 889999999999999999999999999998 67
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC-CCCC-
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS-EGTS- 321 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~-p~~~- 321 (741)
+..|++.+.||+ +.|+|.++.++.+++......+| +++|||+|++++...+ |.+.
T Consensus 473 G~tDvAeIkGHR----------------------RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasAL 529 (906)
T KOG2004|consen 473 GMTDVAEIKGHR----------------------RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASAL 529 (906)
T ss_pred ccccHHhhcccc----------------------eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHH
Confidence 888999999986 57999999999999999999999 8899999999964433 4433
Q ss_pred ---ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc
Q psy11254 322 ---ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK 398 (741)
Q Consensus 322 ---lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~ 398 (741)
+||+++..|.+++-.+. -..++|.+|+|+|..+.|+++|+. |+ ..|+++.+..++...| ...|..+...
T Consensus 530 LElLDPEQNanFlDHYLdVp--~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~I---A~~yLip~a~ 601 (906)
T KOG2004|consen 530 LELLDPEQNANFLDHYLDVP--VDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKI---AERYLIPQAL 601 (906)
T ss_pred HHhcChhhccchhhhccccc--cchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHH---HHHhhhhHHH
Confidence 39999999888875543 246899999999999999999998 77 4689999999999887 5555444332
Q ss_pred cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHH
Q psy11254 399 HGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFM 444 (741)
Q Consensus 399 ~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~ 444 (741)
....-..+.++.++...-+-|+.||++|+.+.++++-..+......
T Consensus 602 ~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al 647 (906)
T KOG2004|consen 602 KDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVAL 647 (906)
T ss_pred HHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2211122233333444456789999999999988876666554433
No 35
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=328.44 Aligned_cols=252 Identities=40% Similarity=0.690 Sum_probs=234.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
....++|+|+.|.++.|+++.|.|.+ +.+|.-|..+|-.+|+|++|+||||||||+|||++||+.+.+|..+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSG----- 216 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG----- 216 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccc-----
Confidence 35679999999999999999999987 788999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
++++..|+|-...++|++|..|+.+.|||+||||+|+++..|.....+..
T Consensus 217 ------------------------------S~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gggn 266 (596)
T COG0465 217 ------------------------------SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN 266 (596)
T ss_pred ------------------------------hhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCc
Confidence 77788899999999999999999999999999999999999965444455
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
.+-..++.++|.+||+|.++.+|.+|++||+++.+|+|++||||||+.|.++.||...|.+| ++.|..+.....+++
T Consensus 267 derEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~I---lkvH~~~~~l~~~Vd 343 (596)
T COG0465 267 DEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQI---LKVHAKNKPLAEDVD 343 (596)
T ss_pred hHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHH---HHHHhhcCCCCCcCC
Confidence 56667899999999999988999999999999999999999999999999999999999999 889988888889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcccc
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 454 (741)
+..+++.|.||+|+|+.+++.+|+..+.++.+..++..++..+..++....
T Consensus 344 l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~ 394 (596)
T COG0465 344 LKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGP 394 (596)
T ss_pred HHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999886544
No 36
>KOG0652|consensus
Probab=100.00 E-value=1.1e-35 Score=289.73 Aligned_cols=227 Identities=46% Similarity=0.731 Sum_probs=195.3
Q ss_pred ccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhc
Q psy11254 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582 (741)
Q Consensus 503 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~ 582 (741)
.+.+.+|+.+++.|.++|+.||+|+|+|||||||||.+|++.|...+..|..+.++.++..|+|+..+.+|+.|..|+..
T Consensus 184 vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEk 263 (424)
T KOG0652|consen 184 VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 263 (424)
T ss_pred HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhcc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
+||||||||+|+++.+|+.+..++++++++...+||+++||+.+..++-||++|||.+.+|||++|.||+|++|+||.|+
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHH
Q psy11254 663 EQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLL 729 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~ 729 (741)
.++|.+|++.|.+.+.-+.++....+.....-..|+--...-+++=.-.+.+.....+.++.+..+.
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~ 410 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGIL 410 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHH
Confidence 9999999999999998888888777655433333332222223332223334444455555444333
No 37
>KOG0651|consensus
Probab=100.00 E-value=1.9e-36 Score=302.65 Aligned_cols=198 Identities=79% Similarity=1.176 Sum_probs=187.1
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+.+.+.+|+.+|+++.++|+.+|.+++||||||+|||.+|+++|..++.+|+.++++++.++|+||+++.+|+.|..|+.
T Consensus 144 lre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 144 LREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYARE 223 (388)
T ss_pred HHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCC
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p 661 (741)
..|||||+||+|+++++|.+.+++++.++++++.+|+++|+|++..++|-+|+|||+|+.+||||+||||+|+.++.|+|
T Consensus 224 ~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlp 303 (388)
T KOG0651|consen 224 VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLP 303 (388)
T ss_pred hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCccccCCCCcccccccccccccch
Q psy11254 662 NEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGF 699 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf 699 (741)
+...|..|++.|..++..++.+++.++..+.....+..
T Consensus 304 ne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 304 NEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGAD 341 (388)
T ss_pred chhhceeeEeeccccccccccccHHHHHHHHhccChHH
Confidence 99999999999999999999999877655544444433
No 38
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.6e-33 Score=307.03 Aligned_cols=378 Identities=20% Similarity=0.268 Sum_probs=258.2
Q ss_pred CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCC
Q psy11254 299 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 378 (741)
Q Consensus 299 ~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~ 378 (741)
.|.|++|-+++.++. |+...+.|.++...++. .+.++|+.++.. .+++.+.+ +-..+.+|.|+
T Consensus 81 ~~~~~vl~d~h~~~~---------~~~~~r~l~~l~~~~~~----~~~~~i~~~~~~-~~p~el~~---~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------DISISRKLRNLSRILKT----QPKTIIIIASEL-NIPKELKD---LITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhc---------chHHHHHHHHHHHHHHh----CCCEEEEEcCCC-CCCHHHHh---ceeEEeecCcC
Confidence 378999999887762 34567777777665554 234667777643 35544543 33567999999
Q ss_pred HHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHH---Hhcccc-
Q psy11254 379 EQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVR---KVSDNK- 454 (741)
Q Consensus 379 ~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~---~~~~~~- 454 (741)
..+...++..+.. .......+-+.+.++..+.|++-.+++.++..+.. ....++.++.....+ ++....
T Consensus 144 ~~ei~~~l~~~~~--~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~k~q~~~~~~ 216 (489)
T CHL00195 144 ESEIKKELTRLIK--SLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLILEEKKQIISQTE 216 (489)
T ss_pred HHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHHHHHHHHHHhhhc
Confidence 9888776322211 11111233456788999999999999888876432 122344443322221 111100
Q ss_pred cccccCcchhccccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCC
Q psy11254 455 KLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPG 534 (741)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G 534 (741)
..+...... .-....+.+.+.+.+... ...........|+++++++||+||||
T Consensus 217 ~le~~~~~~---------~~~dvgGl~~lK~~l~~~------------------~~~~~~~~~~~gl~~pkGILL~GPpG 269 (489)
T CHL00195 217 ILEFYSVNE---------KISDIGGLDNLKDWLKKR------------------STSFSKQASNYGLPTPRGLLLVGIQG 269 (489)
T ss_pred cccccCCCC---------CHHHhcCHHHHHHHHHHH------------------HHHhhHHHHhcCCCCCceEEEECCCC
Confidence 000000000 000011122222222110 00012234567899999999999999
Q ss_pred CChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHH
Q psy11254 535 TGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 614 (741)
Q Consensus 535 ~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l 614 (741)
||||++|+++|++++.+++.++++.+.++|+|+++.+++.+|+.|+..+||||||||+|.++.++...+.+ ....+++
T Consensus 270 TGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~--~~~~rvl 347 (489)
T CHL00195 270 TGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDS--GTTNRVL 347 (489)
T ss_pred CcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCc--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765433222 3457889
Q ss_pred HHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcccc--CCCCcccccccc
Q psy11254 615 MELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH--GEIGDAATKWVL 692 (741)
Q Consensus 615 ~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~--~~~~~~a~~~l~ 692 (741)
.++|+.|+. ....++||+|||+++.+|+|++||||||++|+|++|+.++|.+||+.|+...... .+.+...+....
T Consensus 348 ~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T 425 (489)
T CHL00195 348 ATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLS 425 (489)
T ss_pred HHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhc
Confidence 999999884 3457999999999999999999999999999999999999999999999875432 233334445555
Q ss_pred cccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 693 PFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 693 ~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
...+|+.+.....+++.....+. ..++.+++..++..+.
T Consensus 426 ~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 426 NKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFI 464 (489)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcC
Confidence 66777777777777666555444 4678999988887664
No 39
>KOG0739|consensus
Probab=100.00 E-value=4.6e-35 Score=290.33 Aligned_cols=227 Identities=36% Similarity=0.644 Sum_probs=202.8
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
.+.|++.|+|+.||+..|+.++|.+.+|+..|.+|.+- -.+.+|++|+||||||||-|||++|.+.+.+|.+|+.
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS---- 199 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS---- 199 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh----
Confidence 46789999999999999999999999999999999873 4677899999999999999999999999999999886
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
++++++|.|++++.|+.+|+.|+.+.|+||||||||++|++|+...+
T Consensus 200 -------------------------------SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs-- 246 (439)
T KOG0739|consen 200 -------------------------------SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES-- 246 (439)
T ss_pred -------------------------------HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch--
Confidence 78999999999999999999999999999999999999998865433
Q ss_pred cHHHHHHHHHHHHhccCCC-CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc-C
Q psy11254 323 DREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-G 400 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~-~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~-~ 400 (741)
...++.-.++|-+|.|.. ...+|.|+.+||-|+.||.+++| ||++.|++|+|+..+|..+ ++.|.+..... .
T Consensus 247 -easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~M---F~lhlG~tp~~LT 320 (439)
T KOG0739|consen 247 -EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARM---FKLHLGDTPHVLT 320 (439)
T ss_pred -HHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhh---heeccCCCccccc
Confidence 344666678898998754 34689999999999999999999 9999999999999999998 88888876544 5
Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
+.|+..++..|+||+|+||.-+++.|.+.-+|+
T Consensus 321 ~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 321 EQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 678999999999999999999999988877664
No 40
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-33 Score=334.96 Aligned_cols=231 Identities=48% Similarity=0.821 Sum_probs=209.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.++++|++|||++++|++|++.+.+|+.++++|+.+++.+++|++|+||||||||++++++|++++.+|..+.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~----- 520 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG----- 520 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+++.++|+|++++.++.+|..|....||||||||+|++++.++.... .
T Consensus 521 ------------------------------~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~ 568 (733)
T TIGR01243 521 ------------------------------PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--T 568 (733)
T ss_pred ------------------------------HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--c
Confidence 56678899999999999999999999999999999999988754322 2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
....+.+.++|..|+++....++.||+|||+++.+|++++||||||+.++++.|+..+|.+| ++.+...+....+++
T Consensus 569 ~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i---~~~~~~~~~~~~~~~ 645 (733)
T TIGR01243 569 SVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI---FKIHTRSMPLAEDVD 645 (733)
T ss_pred cHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH---HHHHhcCCCCCccCC
Confidence 23467778899999987777899999999999999999999999999999999999999999 677777777778899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
+..++..++||+|+||.++|++|++.++++.
T Consensus 646 l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 646 LEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888753
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-34 Score=322.41 Aligned_cols=249 Identities=45% Similarity=0.765 Sum_probs=225.8
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
...++++|+++||++++|+.+++.+.+|+..++.|...++.+++|++|+||||||||+|++++|..++.+|..+.+
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~---- 309 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG---- 309 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+++.++|+|+.++.+++.|..|....||||||||+|++++.|.....+
T Consensus 310 -------------------------------~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~- 357 (494)
T COG0464 310 -------------------------------SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG- 357 (494)
T ss_pred -------------------------------HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch-
Confidence 567789999999999999999999999999999999999988543332
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc--cC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK--HG 400 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~--~~ 400 (741)
...+.+.+++.+|++.....+|.||++||+++.+|++++|+||||..+++++|+..+|.+| +..|...... ..
T Consensus 358 --~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i---~~~~~~~~~~~~~~ 432 (494)
T COG0464 358 --SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEI---FKIHLRDKKPPLAE 432 (494)
T ss_pred --HHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHH---HHHHhcccCCcchh
Confidence 2267888999999988888999999999999999999999999999999999999999999 7777764433 46
Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh-ccccchHhHHHHHHHhcc
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE-REYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~-~~~i~~~d~~~a~~~~~~ 452 (741)
++++..+++.+++|+|+||..+|++|.+.+++.. ...++.+||..+++...+
T Consensus 433 ~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 433 DVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKP 485 (494)
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCC
Confidence 8899999999999999999999999999999888 678999999999887544
No 42
>KOG0732|consensus
Probab=100.00 E-value=5.8e-34 Score=328.14 Aligned_cols=391 Identities=31% Similarity=0.493 Sum_probs=276.8
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
..+.|++||||+.++..++|.|.+|+..|+.|.++++.+|+|++++||||||||..++++|+.+....-+++.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf------- 332 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF------- 332 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch-------
Confidence 4689999999999999999999999999999999999999999999999999999999999987655444432
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
+.....+..++|+|+.++.++.+|..|..+.|+|+|+||||-|++.|++.. +..
T Consensus 333 -----------------------fmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqi 386 (1080)
T KOG0732|consen 333 -----------------------FMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQI 386 (1080)
T ss_pred -----------------------hhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHh
Confidence 112236677899999999999999999999999999999999998875543 333
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccC-CCCH
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG-EIDY 404 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~-~~~~ 404 (741)
...++..+|.-|+|+++++.|.||.|||+++.+||+++||||||+.++|+.|+..+|.+| +.+|+.+....- ..-.
T Consensus 387 h~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~I---l~Ihtrkw~~~i~~~l~ 463 (1080)
T KOG0732|consen 387 HASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKI---LDIHTRKWEPPISRELL 463 (1080)
T ss_pred hhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHH---HHHhccCCCCCCCHHHH
Confidence 345566777778898889999999999999999999999999999999999999999999 888877765322 2224
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcc----------------ccchHhHHHHHHHhcccccccccCcchhcccc
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSERE----------------YVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGL 468 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~----------------~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~ 468 (741)
..+++.+.||.|+|++++|.+|++.++++.-. .+...+|..|+.++.+...............
T Consensus 464 ~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~- 542 (1080)
T KOG0732|consen 464 LWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST- 542 (1080)
T ss_pred HHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc-
Confidence 68899999999999999999999999876432 2444555555555443332221111111100
Q ss_pred ccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 469 FAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
.... .....+....++.+........+. .+...+.+...+..-...+--.-.+++.|..|.|-+.+..+|-..+
T Consensus 543 ---~~~~-ll~~~~~~~~iq~~~~va~~~~k~--~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~ 616 (1080)
T KOG0732|consen 543 ---YLKP-LLPFQDALEDIQGLMDVASSMAKI--EEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRL 616 (1080)
T ss_pred ---ceec-ccchHHHHHHhhcchhHHhhhhhH--HHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHH
Confidence 0000 010111111111111100000000 0000000000000000011112247889999999999999998877
Q ss_pred -CccEEEEechhhhccc-cchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q psy11254 549 -DANFLKVVSSAIVDKY-IGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 599 (741)
Q Consensus 549 -~~~~~~v~~~~l~~~~-~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r 599 (741)
+.+..+...+.++..- ..+....+..+|-.|+...|||+||-.+|.+....
T Consensus 617 ~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 617 EGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred hccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 4455555555555544 66778889999999999999999999999876444
No 43
>KOG0731|consensus
Probab=100.00 E-value=9.9e-34 Score=318.87 Aligned_cols=221 Identities=38% Similarity=0.585 Sum_probs=195.2
Q ss_pred cCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588 (741)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~ 588 (741)
-+++|+.|+++|...|+|+||+||||||||.||+|+|++.+.||+++++++++..++|....+++.+|..|+..+|||+|
T Consensus 329 fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iif 408 (774)
T KOG0731|consen 329 FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIF 408 (774)
T ss_pred HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccCCCCC-CCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHH
Q psy11254 589 MDEIDAIGGRRFS-EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARL 667 (741)
Q Consensus 589 iDE~d~~~~~r~~-~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~ 667 (741)
+||+|+++.+|.. .....+.+....++|||.+|||+...++|+|+++|||++.+|+|++||||||+.|++++|+...|.
T Consensus 409 ideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~ 488 (774)
T KOG0731|consen 409 IDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRA 488 (774)
T ss_pred ecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhH
Confidence 9999999999952 233455677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc-CCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHH
Q psy11254 668 EILKIHAGPIAKH-GEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLL 729 (741)
Q Consensus 668 ~i~~~~~~~~~~~-~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~ 729 (741)
+|++.|+...... .+++...+....+..+|..+....-+++-..+.+....+...++..++.
T Consensus 489 ~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 489 SILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 9999999977664 3444444666777788887777766666666666777788888887765
No 44
>KOG0737|consensus
Probab=100.00 E-value=1.8e-33 Score=289.52 Aligned_cols=225 Identities=38% Similarity=0.685 Sum_probs=200.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhC-CCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~-l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
.+++|+|||||+.+|++++|.|.+|+..|++|.... +.+++|++|+||||||||++|+++|.+.+..|+.|++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~------ 160 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV------ 160 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec------
Confidence 468999999999999999999999999999996544 4678899999999999999999999999999999986
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+.+.++|.|+.++.++..|..|...+|+||||||+|++.+.| .+ .|.
T Consensus 161 -----------------------------s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s---~dH 207 (386)
T KOG0737|consen 161 -----------------------------SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RS---TDH 207 (386)
T ss_pred -----------------------------cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-cc---chH
Confidence 667789999999999999999999999999999999999988 33 344
Q ss_pred HHHHH-HHHHHHhccCCCCCCC--eEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 325 EIQRT-LMELLNQMDGFDSLGQ--VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 325 ~~~~~-l~~lL~~l~~~~~~~~--v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
+..+. =.+++..++|+.+..+ |.|++|||+|.++|.|++| |+.+.++++.|+..+|.+| ++..........+
T Consensus 208 Ea~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kI---LkviLk~e~~e~~ 282 (386)
T KOG0737|consen 208 EATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKI---LKVILKKEKLEDD 282 (386)
T ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHH---HHHHhcccccCcc
Confidence 44333 3467777888876655 8899999999999999999 9999999999999999999 7777777778899
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
+|+.+++..|+||+|.||+.+|+.|++..++.-
T Consensus 283 vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 283 VDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred cCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 999999999999999999999999999887653
No 45
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.7e-33 Score=301.86 Aligned_cols=231 Identities=45% Similarity=0.718 Sum_probs=206.0
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+.+.+.+|+.+++++..+|+.++++++|+||||||||++|+++|+.++.+|+.+.++++..+|+|+++..++.+|..|+.
T Consensus 157 l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 157 IREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE 236 (398)
T ss_pred HHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHh
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCC
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p 661 (741)
..||||||||+|+++.+|.....+.+....+.+.++|++|+++....+++||+|||+++.+|||++||||||+.|+||+|
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 99999999999999998876655566788899999999999998888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 662 NEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
+.++|..||+.++..+....+++...+.......+++.+.....++....+.+....++.+++..++.-|.
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99999999999998776666666555555556677777777777777777777778899999999887764
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.6e-32 Score=311.33 Aligned_cols=251 Identities=41% Similarity=0.704 Sum_probs=222.9
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
++.++++|+|++|++++|+++++.+.+ +.+++.|...+..+++|++|+||||||||+++|++|+..+.++..+++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~---- 121 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG---- 121 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH----
Confidence 446789999999999999999998886 788999999999999999999999999999999999999888877764
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+++...+.|...+.++.+|..|....|+||||||+|+++.++....++.
T Consensus 122 -------------------------------~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~ 170 (495)
T TIGR01241 122 -------------------------------SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG 170 (495)
T ss_pred -------------------------------HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCc
Confidence 4455667888888999999999999999999999999998876555555
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~ 402 (741)
+.+..+.+.++|..|+++....++.||++||+++.+|++++|+||||+.++++.|+..+|.+| +..+........++
T Consensus 171 ~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~i---l~~~l~~~~~~~~~ 247 (495)
T TIGR01241 171 NDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEI---LKVHAKNKKLAPDV 247 (495)
T ss_pred cHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHH---HHHHHhcCCCCcch
Confidence 667778889999999988777889999999999999999999999999999999999999998 66666655555678
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
++..++..+.||+|+|+.++|++|+..+.++....++.+++..++.....
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999999999888888888999999999987653
No 47
>KOG0738|consensus
Probab=100.00 E-value=1.5e-33 Score=289.41 Aligned_cols=222 Identities=35% Similarity=0.483 Sum_probs=189.8
Q ss_pred cccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHH
Q psy11254 500 LDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579 (741)
Q Consensus 500 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a 579 (741)
.-+++.+.+|+..|+.|+.+ ..|-+++|++||||||||+||+++|.+++-.|+.|+.+.+.+||-|+|++.+|.+|+.|
T Consensus 222 ~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemA 300 (491)
T KOG0738|consen 222 KLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMA 300 (491)
T ss_pred HHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHH
Confidence 34567788999999999865 56778999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCC-CC---eEEEEeeCCCCCCCccccCCCCcceE
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL-GQ---VKMIMATNRPDTLDPALLRPGRLDRK 655 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~-~~---v~vi~tTn~~~~ld~al~rpgR~d~~ 655 (741)
|..+|++|||||||+|+.+|++.+. +...+|+-++||.+|||+.+. .+ |+|+++||.||.||.||.| ||.+.
T Consensus 301 RfyAPStIFiDEIDslcs~RG~s~E--HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKR 376 (491)
T KOG0738|consen 301 RFYAPSTIFIDEIDSLCSQRGGSSE--HEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKR 376 (491)
T ss_pred HHhCCceeehhhHHHHHhcCCCccc--hhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhh
Confidence 9999999999999999999976643 345678899999999998643 34 8999999999999999999 99999
Q ss_pred EEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHH
Q psy11254 656 IEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILA 726 (741)
Q Consensus 656 i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~ 726 (741)
|++|+|+.++|..++++.++......++.-..+.......+|..+-++-..+....+.+.-...+-++|..
T Consensus 377 IyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~ 447 (491)
T KOG0738|consen 377 IYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQ 447 (491)
T ss_pred eeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhh
Confidence 99999999999999999999887777777777666677888888877766666555554433444444443
No 48
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7e-33 Score=270.39 Aligned_cols=244 Identities=35% Similarity=0.555 Sum_probs=212.3
Q ss_pred ccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc
Q psy11254 161 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL 240 (741)
Q Consensus 161 ~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~ 240 (741)
..+..++++++|+.|.++.|+.-+=.+.+ +.+|+.|.+ -.|+++++|||||||||++||++|++...++..+..
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vka-- 184 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKA-- 184 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEech--
Confidence 34557899999999999999886655555 678888775 457899999999999999999999999998887754
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+++++++|...+++++++.+|....|||+||||+|+|+-+|.- .
T Consensus 185 ---------------------------------t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry--Q 229 (368)
T COG1223 185 ---------------------------------TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY--Q 229 (368)
T ss_pred ---------------------------------HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH--H
Confidence 67889999999999999999999999999999999999866532 2
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG 400 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~ 400 (741)
++--.+...+..+|.+|+++.++.+|..|++||+++.||++++. ||...|+|.+|++++|..| +..+...+...-
T Consensus 230 elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~i---le~y~k~~Plpv 304 (368)
T COG1223 230 ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEI---LEYYAKKFPLPV 304 (368)
T ss_pred HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHH---HHHHHHhCCCcc
Confidence 33333567888999999999999999999999999999999988 9999999999999999999 888888888888
Q ss_pred CCCHHHHHHhcCCCCHHHHHHH-HHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNV-CTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l-~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
+.++..+++.+.|++|+||..- .+.|-..|+...+..+..+|+..++++.
T Consensus 305 ~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 305 DADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred ccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 8899999999999999999765 4556667888899999999999998763
No 49
>KOG0739|consensus
Probab=100.00 E-value=9.1e-34 Score=281.17 Aligned_cols=219 Identities=37% Similarity=0.583 Sum_probs=184.5
Q ss_pred cccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHH
Q psy11254 498 SKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFN 577 (741)
Q Consensus 498 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~ 577 (741)
.+..+++.+.+|++.|.+|.. +..|-+++|||||||||||.||+++|.+.+..|++|+.++|+++|+|+|++.++.+|+
T Consensus 141 AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFe 219 (439)
T KOG0739|consen 141 AKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFE 219 (439)
T ss_pred HHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHH
Confidence 345678889999999999874 3566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCC-CCeEEEEeeCCCCCCCccccCCCCcceEE
Q psy11254 578 YARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL-GQVKMIMATNRPDTLDPALLRPGRLDRKI 656 (741)
Q Consensus 578 ~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~-~~v~vi~tTn~~~~ld~al~rpgR~d~~i 656 (741)
.||.+.|+||||||||++++.|+.+.+. ..+|+-.++|-+|+|+... ++|+|+++||-||.+|.|+.| ||++.|
T Consensus 220 mARe~kPSIIFiDEiDslcg~r~enEse---asRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRI 294 (439)
T KOG0739|consen 220 MARENKPSIIFIDEIDSLCGSRSENESE---ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRI 294 (439)
T ss_pred HHHhcCCcEEEeehhhhhccCCCCCchH---HHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--Hhhcce
Confidence 9999999999999999999998655443 3467889999999999543 579999999999999999999 999999
Q ss_pred EcCCCCHHHHHHHHHHhhcCccccCCCCccccc---ccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHH
Q psy11254 657 EIPLPNEQARLEILKIHAGPIAKHGEIGDAATK---WVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILAL 727 (741)
Q Consensus 657 ~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~---~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~ 727 (741)
|+|+|...+|..+|+.|++..+. .+...+.. ......+|.++.+++..+ +|+-.+..|++-|...+
T Consensus 295 YIPLPe~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kTeGySGsDisivVrDa---lmePvRkvqsAthFk~v 363 (439)
T KOG0739|consen 295 YIPLPEAHARARMFKLHLGDTPH--VLTEQDFKELARKTEGYSGSDISIVVRDA---LMEPVRKVQSATHFKKV 363 (439)
T ss_pred eccCCcHHHhhhhheeccCCCcc--ccchhhHHHHHhhcCCCCcCceEEEehhh---hhhhHHHhhhhhhhhcc
Confidence 99999999999999999997553 34444433 344567888888888877 44444555666655443
No 50
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=303.42 Aligned_cols=224 Identities=39% Similarity=0.586 Sum_probs=204.0
Q ss_pred cCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588 (741)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~ 588 (741)
.+++|..|..+|...|+|++++||||||||+||+++|++.+.||+++++++++..|+|-....+|++|..|+.++|||+|
T Consensus 168 fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIF 247 (596)
T COG0465 168 FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIF 247 (596)
T ss_pred HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEE
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHH
Q psy11254 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLE 668 (741)
Q Consensus 589 iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~ 668 (741)
|||+|+++..|+..-++.+.+...+++|+|.+|||+.+...|+||++||||+.+|||++||||||+.|.++.||...|.+
T Consensus 248 IDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~ 327 (596)
T COG0465 248 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQ 327 (596)
T ss_pred EehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHH
Confidence 99999999999766555667888999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 669 ILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 669 i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|++.|........+++-..+....+..+++...+..-+++---+.......+..++.-+..-|+
T Consensus 328 IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 328 ILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHh
Confidence 9999999777777777777888888899998888887777777777888888888887665554
No 51
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=1.6e-31 Score=297.27 Aligned_cols=243 Identities=27% Similarity=0.402 Sum_probs=202.5
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
+++++|++|||++.+|+.+.+.... + .......|+..|+|++|+||||||||++||+||++++.++..+..
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~-~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~------ 292 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS-F--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV------ 292 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH-h--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh------
Confidence 4578899999999999999875532 1 234567789999999999999999999999999999999888864
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+.+.++|.|+++++++++|..|....||||||||+|+++..+...+ ...
T Consensus 293 -----------------------------~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~ 341 (489)
T CHL00195 293 -----------------------------GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSG 341 (489)
T ss_pred -----------------------------HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--Cch
Confidence 4556789999999999999999999999999999999987543221 223
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc--cCCC
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK--HGEI 402 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~--~~~~ 402 (741)
...+.+..++..|+. ...++.||+|||+++.+|++++|+||||+.++++.|+..+|.+| +..|...... ..+.
T Consensus 342 ~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I---l~~~l~~~~~~~~~~~ 416 (489)
T CHL00195 342 TTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI---FKIHLQKFRPKSWKKY 416 (489)
T ss_pred HHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH---HHHHHhhcCCCccccc
Confidence 446677777777764 24679999999999999999999999999999999999999999 6666554432 2477
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
++..++..|+||+|+||.++|.+|...+.... ..++.+|+..+++.+.+.
T Consensus 417 dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 417 DIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCC
Confidence 89999999999999999999999998887654 458999999999887653
No 52
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2e-31 Score=305.36 Aligned_cols=249 Identities=39% Similarity=0.683 Sum_probs=220.8
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
...++|+|++|++++|+++.+.+.+ +.++..|..++..+++|++|+||||||||+++|++|++.+.++..+++
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~------ 249 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISG------ 249 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccH------
Confidence 3568999999999999999998876 778888999999999999999999999999999999999888877765
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+++...+.|....+++.+|..|....||||||||+|+++..|.....+.+.
T Consensus 250 -----------------------------s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~ 300 (638)
T CHL00176 250 -----------------------------SEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGND 300 (638)
T ss_pred -----------------------------HHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcH
Confidence 334455667777889999999999999999999999999887655556667
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCH
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~ 404 (741)
+....+.++|..++++....++.||++||+++.+|++++||||||+.+.++.|+..+|.+| ++.|........++++
T Consensus 301 e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~I---L~~~l~~~~~~~d~~l 377 (638)
T CHL00176 301 EREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDI---LKVHARNKKLSPDVSL 377 (638)
T ss_pred HHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHH---HHHHHhhcccchhHHH
Confidence 7788999999999988777899999999999999999999999999999999999999999 7777666555567788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
..++..+.||+|+|+.++|.+|+..+.++....++.+++..++.++..
T Consensus 378 ~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 378 ELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999988888888999999999987643
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=2e-31 Score=292.46 Aligned_cols=230 Identities=51% Similarity=0.824 Sum_probs=205.1
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+.+.+.+|+.+++.+..+|+.++.+++|+||||||||++|+++|..++.+|+.++++++..+|+|+++..++.+|+.|+.
T Consensus 143 l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 143 VREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELARE 222 (389)
T ss_pred HHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHh
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCC
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p 661 (741)
..||||||||+|.++..|...+.+.+.+..+.+.++|.+++++...++++||+|||+++.+|+|++||||||+.|+||+|
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 99999999999999998877666667788899999999999998888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 662 NEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
+.++|.+||+.++..+....+++...+.......+++.+......+....+.+.....+.+++..++.-|
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999999999999877666566666666666677777777777777777777777889999999887654
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=293.46 Aligned_cols=230 Identities=46% Similarity=0.770 Sum_probs=197.4
Q ss_pred ccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhc
Q psy11254 503 KPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582 (741)
Q Consensus 503 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~ 582 (741)
.+.+.+|+.+++++..+|+.++.+++|+||||||||++|+++|++++.+|+.+.++++..+|+|+++..++.+|..|+..
T Consensus 196 ~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~ 275 (438)
T PTZ00361 196 KEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN 275 (438)
T ss_pred HHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhC
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
.||||||||+|+++.+|....++.+.+..+.+.++|++++|+....++.||+|||+++.+|+|++||||||+.|+||+|+
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 99999999999999988766666677888999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 663 EQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
.++|.+||+.++..+....+++...+.......+++.+......+....+.+.+...+.+++..++.-|.
T Consensus 356 ~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 356 EKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 9999999999998776655555444444444455555444444444444555667899999998877653
No 55
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=261.21 Aligned_cols=212 Identities=33% Similarity=0.499 Sum_probs=184.1
Q ss_pred CChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 511 ~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
.+|+.|. -+.|+++|||||||||||++|+++|++.+.|++.++..++++.|+|+..+.++.++++|+..+|||+|||
T Consensus 141 enPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiD 217 (368)
T COG1223 141 ENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFID 217 (368)
T ss_pred hChHHhc---ccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEeh
Confidence 4555544 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHH
Q psy11254 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEIL 670 (741)
Q Consensus 591 E~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~ 670 (741)
|+|+++-.|.-.. ...++.+++|.||++|||+....+|+.|++||+|+.+|||+-+ ||..-|+|.+|+.++|..|+
T Consensus 218 E~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 218 ELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred hhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHH
Confidence 9999987764322 2235678999999999999999999999999999999999987 99999999999999999999
Q ss_pred HHhhcCccccCCCCcccccccccccccchH-HHHHHHhhhhhhhcCCCcccHHHHHHHHH
Q psy11254 671 KIHAGPIAKHGEIGDAATKWVLPFTAGGFI-YIATVSVIPELLEDTSPKQTVKEILALLL 729 (741)
Q Consensus 671 ~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~-~~a~~~~~~~l~~~~~~~~s~~~i~~~l~ 729 (741)
+.+.+.++...+.....+.......+|..+ -+....+++..+.+.+.....+||..++.
T Consensus 294 e~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 294 EYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 999998887777665555544555555544 45667788888888888999999998886
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=303.15 Aligned_cols=420 Identities=21% Similarity=0.309 Sum_probs=258.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
=.++.+.|-++.++++.+.+... ...+++|+||||||||++++.++..+-....... +..
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~----l~~--- 242 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV----MAD--- 242 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch----hcC---
Confidence 34667889999999988876542 2245789999999999999999976521100000 000
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
...+......++ ..|.|+.+++++.+|..+....|+||||||+|.|++.+..... ..+
T Consensus 243 ------------------~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d 302 (758)
T PRK11034 243 ------------------CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVD 302 (758)
T ss_pred ------------------CeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHH
Confidence 000000001111 3578899999999999888888999999999999987643222 222
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccC
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG 400 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~ 400 (741)
. ..+|..+- .++++.||++|+..+ ..|+++.| ||+ .|.++.|+.+++..| +......+..++
T Consensus 303 ~----~nlLkp~L---~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~I---L~~~~~~ye~~h 369 (758)
T PRK11034 303 A----ANLIKPLL---SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQI---INGLKPKYEAHH 369 (758)
T ss_pred H----HHHHHHHH---hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHH---HHHHHHHhhhcc
Confidence 2 23333221 247899999998765 47999999 995 799999999999998 555555555555
Q ss_pred CCCHH-----HHHHhc-----CCCCHHHHHHHHHHHHHHHH----hhhccccchHhHHHHHHHhcccccccccCcch-hc
Q psy11254 401 EIDYE-----AVVKLS-----DSFNGADLRNVCTEAGLFAI----RSEREYVTQEDFMKAVRKVSDNKKLDHCNSYR-TE 465 (741)
Q Consensus 401 ~~~~~-----~la~~t-----~g~~gadi~~l~~~A~~~a~----~~~~~~i~~~d~~~a~~~~~~~~~~~~~~~~~-~~ 465 (741)
++.+. ..+..+ +.+.+.....++.+|+.... ...+..++.+++...+..+..-.......... ..
T Consensus 370 ~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l 449 (758)
T PRK11034 370 DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTL 449 (758)
T ss_pred CCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHH
Confidence 55542 223333 34455567778888875431 11223466667666665554322111000000 00
Q ss_pred cccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCC----CCCCceEEEcCCCCChHHHH
Q psy11254 466 AGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGI----TPPKGCLLYGPPGTGKTLLA 541 (741)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~ll~G~~G~GKt~l~ 541 (741)
..+ ..+-....++++.....+..... ....|+ +|...++|+||||||||++|
T Consensus 450 ~~l-~~~L~~~ViGQ~~ai~~l~~~i~-----------------------~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 450 KNL-GDRLKMLVFGQDKAIEALTEAIK-----------------------MSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred HHH-HHHhcceEeCcHHHHHHHHHHHH-----------------------HHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 000 00001111222222222211100 001122 22345899999999999999
Q ss_pred HHHHHHhCccEEEEechhhhc-----cccchHH-----HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHH
Q psy11254 542 RAVASQLDANFLKVVSSAIVD-----KYIGESA-----RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 611 (741)
Q Consensus 542 ~~~a~~~~~~~~~v~~~~l~~-----~~~g~s~-----~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~ 611 (741)
+++|..++.+++.++++++.. .++|... ..-..+....+..+.||+||||+|.. ++++.
T Consensus 506 k~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~ 574 (758)
T PRK11034 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVF 574 (758)
T ss_pred HHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHH
Confidence 999999999999998887633 2222211 11123444445566799999999984 45667
Q ss_pred HHHHHHHHHccCCCC------CCCeEEEEeeCCC-------------------------CCCCccccCCCCcceEEEcCC
Q psy11254 612 RTLMELLNQMDGFDS------LGQVKMIMATNRP-------------------------DTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 612 ~~l~~lL~~~~g~~~------~~~v~vi~tTn~~-------------------------~~ld~al~rpgR~d~~i~~~~ 660 (741)
..+.++|+...-.+. ..++++|+|||.. ..+.|+|+. |+|.+|.|++
T Consensus 575 ~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~ 652 (758)
T PRK11034 575 NLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDH 652 (758)
T ss_pred HHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCC
Confidence 777777764321222 2478899999932 135577776 9999999999
Q ss_pred CCHHHHHHHHHHhhcCc
Q psy11254 661 PNEQARLEILKIHAGPI 677 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~ 677 (741)
++.++..+|++.++..+
T Consensus 653 L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 653 LSTDVIHQVVDKFIVEL 669 (758)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=4.5e-30 Score=303.30 Aligned_cols=442 Identities=23% Similarity=0.324 Sum_probs=270.0
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC----------CCceeee
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKVV 237 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~----------~~~~~v~ 237 (741)
-.++++.|-++.++++.+.+... -..+++|+||||||||++++.+|..+. ..+..+.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 35778999999999888766432 234688999999999999999999872 2222221
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
. ..++ .+|.|+.+++++.+|..+..+.|+||||||+|.+++.+
T Consensus 246 ~-----------------------------------~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g 290 (731)
T TIGR02639 246 M-----------------------------------GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAG 290 (731)
T ss_pred H-----------------------------------HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccC
Confidence 1 2222 36889999999999999988889999999999999876
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccch
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPIS 390 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~ 390 (741)
...+++.| ....|... +. ++.+.+|++|+..+ ..|+++.| ||. .+.++.|+.+++..|+....
T Consensus 291 ~~~~~~~~--~~~~L~~~---l~----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 291 ATSGGSMD--ASNLLKPA---LS----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CCCCccHH--HHHHHHHH---Hh----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 43222222 23333332 22 46899999999643 47999999 996 69999999999988843322
Q ss_pred hccCCCcccC-----CCCHHHHHHhcCCCCHH-----HHHHHHHHHHHHH-Hhh---hccccchHhHHHHHHHhcccccc
Q psy11254 391 IHAGPIAKHG-----EIDYEAVVKLSDSFNGA-----DLRNVCTEAGLFA-IRS---EREYVTQEDFMKAVRKVSDNKKL 456 (741)
Q Consensus 391 ~~~~~~~~~~-----~~~~~~la~~t~g~~ga-----di~~l~~~A~~~a-~~~---~~~~i~~~d~~~a~~~~~~~~~~ 456 (741)
. .+..+. +-.+..++..+..|-+. ..-.++.+|+... ++. ....++.+++...+..+..-...
T Consensus 359 ~---~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~ 435 (731)
T TIGR02639 359 E---KYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVK 435 (731)
T ss_pred H---HHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChh
Confidence 2 221111 22234566666666433 2234555554422 111 12347777777777765432210
Q ss_pred cccCcchhccccccc--cccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCC----CCCceEEE
Q psy11254 457 DHCNSYRTEAGLFAI--RSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGIT----PPKGCLLY 530 (741)
Q Consensus 457 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~ll~ 530 (741)
.. .+.....+..+ .-....++++...+.+... -...+.|+. |...++|+
T Consensus 436 ~~--~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~-----------------------i~~~~~g~~~~~~p~~~~lf~ 490 (731)
T TIGR02639 436 TV--SVDDREKLKNLEKNLKAKIFGQDEAIDSLVSS-----------------------IKRSRAGLGNPNKPVGSFLFT 490 (731)
T ss_pred hh--hhHHHHHHHHHHHHHhcceeCcHHHHHHHHHH-----------------------HHHHhcCCCCCCCCceeEEEE
Confidence 00 00000000000 0000111222211111110 011123332 22348999
Q ss_pred cCCCCChHHHHHHHHHHhCccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q psy11254 531 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 531 G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~ 598 (741)
||+|||||++|+++|..++.+++.++++++..+ |+|... .+.+.+..+..+.+|+||||+|.+
T Consensus 491 Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka--- 565 (731)
T TIGR02639 491 GPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA--- 565 (731)
T ss_pred CCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc---
Confidence 999999999999999999999999998876432 333221 234555556677899999999973
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEEeeCCCC-------------------------CCCcccc
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIMATNRPD-------------------------TLDPALL 647 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~tTn~~~-------------------------~ld~al~ 647 (741)
++.+...+.++++...-.+. ..++++|+|||... .+.|+|+
T Consensus 566 --------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~ 637 (731)
T TIGR02639 566 --------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR 637 (731)
T ss_pred --------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH
Confidence 45667777777765321122 24688999998642 2456666
Q ss_pred CCCCcceEEEcCCCCHHHHHHHHHHhhcCccc-------cCCCCcccccccccc-cccchHHHHHHHhhhhhh
Q psy11254 648 RPGRLDRKIEIPLPNEQARLEILKIHAGPIAK-------HGEIGDAATKWVLPF-TAGGFIYIATVSVIPELL 712 (741)
Q Consensus 648 rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~-------~~~~~~~a~~~l~~~-~s~gf~~~a~~~~~~~l~ 712 (741)
. |||.+|.|.+++.++..+|++.++..+.. .-.+++.+..+++.. ....+-.....+++...+
T Consensus 638 ~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 638 N--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred h--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 4 99999999999999999999998874321 123445555554432 233333444444444333
No 58
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.8e-30 Score=288.08 Aligned_cols=171 Identities=45% Similarity=0.777 Sum_probs=152.9
Q ss_pred cceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc----------EEEEechhhhccccchHHHHHH
Q psy11254 504 PVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN----------FLKVVSSAIVDKYIGESARLIR 573 (741)
Q Consensus 504 ~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~----------~~~v~~~~l~~~~~g~s~~~i~ 573 (741)
+.+.+|+.++++|..+|+.++++++||||||||||++++++|++++.+ |+.+.++++.++|+|++++.++
T Consensus 196 ~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir 275 (512)
T TIGR03689 196 DAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIR 275 (512)
T ss_pred HHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHH
Confidence 345678889999999999999999999999999999999999998643 6778889999999999999999
Q ss_pred HHHHHHHhc----CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCC
Q psy11254 574 EMFNYARNH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP 649 (741)
Q Consensus 574 ~~f~~a~~~----~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rp 649 (741)
.+|+.|+.. .||||||||+|+++..|+.... .+ .-.++++++|++|||+...++++||+|||+++.||||++||
T Consensus 276 ~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d-~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRp 353 (512)
T TIGR03689 276 LIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SD-VETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRP 353 (512)
T ss_pred HHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-ch-HHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCc
Confidence 999999864 6999999999999988854322 22 23578899999999999888999999999999999999999
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHhhcC
Q psy11254 650 GRLDRKIEIPLPNEQARLEILKIHAGP 676 (741)
Q Consensus 650 gR~d~~i~~~~p~~~~r~~i~~~~~~~ 676 (741)
||||++|+|++|+.++|.+||+.++..
T Consensus 354 GRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 354 GRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999863
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.1e-30 Score=269.85 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=136.1
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhc-----CCeEEEEccc
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH-----QPCIIFMDEI 592 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~-----~p~Vl~iDE~ 592 (741)
..++++|.+++||||||||||++|+++|++++.+++.++++++.++|+|++++++|.+|..|+.. +||||||||+
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 35788999999999999999999999999999999999999999999999999999999999863 6999999999
Q ss_pred ccccCCCCCCCCcccHHHHHHHHHHHHHccCC------------CCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 593 DAIGGRRFSEGTSADREIQRTLMELLNQMDGF------------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 593 d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~------------~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
|+++++|.... .....+.+..+||+.||+. +...+|+||+|||+|+.|||||+||||||+.+ +.
T Consensus 222 DA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 99999986322 2212234447899988763 34567999999999999999999999999965 58
Q ss_pred CCHHHHHHHHHHhhcCc
Q psy11254 661 PNEQARLEILKIHAGPI 677 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~ 677 (741)
|+.++|.+||+.+++..
T Consensus 298 Pd~e~R~eIL~~~~r~~ 314 (413)
T PLN00020 298 PTREDRIGVVHGIFRDD 314 (413)
T ss_pred CCHHHHHHHHHHHhccC
Confidence 99999999999999864
No 60
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=290.56 Aligned_cols=164 Identities=24% Similarity=0.246 Sum_probs=131.2
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--c---------c----hhhHH
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--V---------T----SKEDM 248 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--~---------~----~~~~~ 248 (741)
.+.+.++.+.+|+++++.+..| ++|+|+||+|||||+|+|+|...++.+.|+.... + . ..+.+
T Consensus 8 ~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v 87 (530)
T COG0488 8 NLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYV 87 (530)
T ss_pred eeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHH
Confidence 3556678899999999999999 9999999999999999999999998888765421 0 0 00000
Q ss_pred -------H-----------------------------HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHH
Q psy11254 249 -------A-----------------------------ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMF 292 (741)
Q Consensus 249 -------~-----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~ 292 (741)
. .+.+...+.++..++..+++... ...++.+|||++.|+ ++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv--~L 164 (530)
T COG0488 88 IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRV--AL 164 (530)
T ss_pred HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHH--HH
Confidence 0 01112233556666777777766 889999999999998 99
Q ss_pred HHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccc
Q psy11254 293 NYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLD 369 (741)
Q Consensus 293 ~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d 369 (741)
++|+..+|++|+||| ||||+|.++..||.++|..+.+ +||++|||+++||..+.+.-.+|
T Consensus 165 A~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g-------tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 165 ARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG-------TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred HHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC-------cEEEEeCCHHHHHHHhhheEEec
Confidence 999999999999999 9999999999999999988765 89999999999998887643333
No 61
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.5e-29 Score=293.44 Aligned_cols=248 Identities=40% Similarity=0.676 Sum_probs=221.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
...+|.+++|++..++++.+.+.+ +..+..+..++..+++|++|+||||||||++++++++.++.+|..+++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~------- 218 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG------- 218 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh-------
Confidence 456899999999999999999887 566778888899999999999999999999999999999999988875
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
+++...+.|....+++..|..|....||||||||+|+++..+.....+.+.+
T Consensus 219 ----------------------------~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~ 270 (644)
T PRK10733 219 ----------------------------SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE 270 (644)
T ss_pred ----------------------------HHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchH
Confidence 3344567777888899999999999999999999999998886655555666
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHH
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYE 405 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~ 405 (741)
....+.++|..|+++....++.||++||+++.+|++++||||||+.+.++.|+..+|.+| +..|........++++.
T Consensus 271 ~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~I---l~~~~~~~~l~~~~d~~ 347 (644)
T PRK10733 271 REQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI---LKVHMRRVPLAPDIDAA 347 (644)
T ss_pred HHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHH---HHHHhhcCCCCCcCCHH
Confidence 778889999999998888899999999999999999999999999999999999999999 77787777777788999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 406 AVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 406 ~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
.+++.+.||+|+|+.++|++|+..+.+..+..++..++..+...+..
T Consensus 348 ~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 348 IIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999988889999999999876643
No 62
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.9e-29 Score=286.30 Aligned_cols=223 Identities=39% Similarity=0.604 Sum_probs=189.3
Q ss_pred CCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
+.+++.+...|..++++++|+||||||||++|+++|++++.+++.++++++.+.|+|.++..++.+|+.|+...||||||
T Consensus 74 l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~i 153 (495)
T TIGR01241 74 LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 153 (495)
T ss_pred HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence 56777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
||+|.++.+|.....+.+.+..++++++|.+||++...++++||+|||+|+.+|||++||||||+.|+|++|+.++|.+|
T Consensus 154 DEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~i 233 (495)
T TIGR01241 154 DEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEI 233 (495)
T ss_pred echhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHH
Confidence 99999998886543444556778999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+.++.......+++...+.......+++.+.....+++-..+.+.....+.+++..++..+.
T Consensus 234 l~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 234 LKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 999998765444444444444445556666665555555444555667789999988877654
No 63
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.3e-29 Score=302.91 Aligned_cols=250 Identities=20% Similarity=0.294 Sum_probs=181.0
Q ss_pred CChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh------HHHHHhhhhhh--hccccc
Q psy11254 192 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE------DMAILMGNQLK--RRSTHH 263 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~------~~~~~~~~~~~--~~~~~~ 263 (741)
.+++....+|+.+|+|+||+||||||||.|||++|++.+.+|..++++.++.... ++.....+... ..+..-
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 4466778899999999999999999999999999999999999999876653210 00000000000 000000
Q ss_pred ccccccCCCccchh-hhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCC-
Q psy11254 264 LEKTYFPFYSSAIV-DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD- 341 (741)
Q Consensus 264 l~~~~~~~~~~~~~-~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~- 341 (741)
++...+.. ..... ....|....+++.+|+.|+.++||||||||||+++.+.. ....+.++++.|++..
T Consensus 1697 ~~~e~~e~-~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---------~~ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1697 LDTELLTM-MNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---------NYLSLGLLVNSLSRDCE 1766 (2281)
T ss_pred cchhhhhh-cchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---------ceehHHHHHHHhccccc
Confidence 00000000 00000 012333445689999999999999999999999986521 1123667788888653
Q ss_pred --CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc-CCCCHHHHHHhcCCCCHHH
Q psy11254 342 --SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-GEIDYEAVVKLSDSFNGAD 418 (741)
Q Consensus 342 --~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~-~~~~~~~la~~t~g~~gad 418 (741)
+..+|.||+|||+|+.||||++||||||+.|.++.|+..+|.+++..+. +...+... ..+++..+|+.|.||+|||
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl-~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS-YTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH-hhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 3568999999999999999999999999999999999988888733222 33333333 3367899999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 419 LRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 419 i~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
+.++|.+|+..++++.+..++.+++..|+.+...
T Consensus 1846 LanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1846 LVALTNEALSISITQKKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987654
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=3.4e-29 Score=273.87 Aligned_cols=228 Identities=51% Similarity=0.821 Sum_probs=201.1
Q ss_pred cceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC
Q psy11254 504 PVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 504 ~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~ 583 (741)
+.+.+|+.+++.+..+|+.++.+++|+||||||||++|+++|+.++.+++.+.++++..+|+|++...++.+|+.++...
T Consensus 136 ~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~ 215 (364)
T TIGR01242 136 EAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKA 215 (364)
T ss_pred HHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
||||||||+|.++..|.....+.+.+..+.+.++|.+++++...+++.||+|||+++.+|++++||||||+.|+||.|+.
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 99999999999998887666666778889999999999999877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 664 QARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 664 ~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
++|.+||+.++.......+++...+.......+++.+......+....+.+.+..++.+++..++.-|
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999877655556655565566666677777666667666677788889999999887644
No 65
>KOG0741|consensus
Probab=99.96 E-value=3.3e-30 Score=272.88 Aligned_cols=205 Identities=38% Similarity=0.572 Sum_probs=168.8
Q ss_pred ccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCc-cEEEEechhhhccccchHHHHHHHHHHHHHhc----
Q psy11254 508 LPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA-NFLKVVSSAIVDKYIGESARLIREMFNYARNH---- 582 (741)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~-~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~---- 582 (741)
..+..|++..++|++.-+|+|||||||||||.+|+.|...+++ +--.|++++++++|+|+|+.++|.+|+.|...
T Consensus 240 sRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 240 SRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred hhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 3456788999999999999999999999999999999999964 35568999999999999999999999999652
Q ss_pred ----CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEc
Q psy11254 583 ----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 658 (741)
Q Consensus 583 ----~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~ 658 (741)
.-.||+|||+|+++.+|++.+++.. .-..+++|||..|||++..++++||+.|||.++||.|+||||||...+++
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TG-VhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTG-VHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCC-ccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 2369999999999999987655432 33589999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCccccCCCCcc----cccccccccccchHHHHHHHhhhhhhhc
Q psy11254 659 PLPNEQARLEILKIHAGPIAKHGEIGDA----ATKWVLPFTAGGFIYIATVSVIPELLED 714 (741)
Q Consensus 659 ~~p~~~~r~~i~~~~~~~~~~~~~~~~~----a~~~l~~~~s~gf~~~a~~~~~~~l~~~ 714 (741)
.+||++.|.+|++.|.+++..+.-+++. .+..+. ..-.|...-..+.++.+.+-.
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT-KNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT-KNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh-cCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999988776544433 223222 233344444455555554433
No 66
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1e-28 Score=295.22 Aligned_cols=218 Identities=19% Similarity=0.253 Sum_probs=179.4
Q ss_pred eeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccc----------cc---------
Q psy11254 506 IELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY----------IG--------- 566 (741)
Q Consensus 506 i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~----------~g--------- 566 (741)
+..|...++...++|+.+++|+||+||||||||.||+++|++.+.||+.++++++++++ +|
T Consensus 1612 ~~~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~ 1691 (2281)
T CHL00206 1612 FHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSD 1691 (2281)
T ss_pred ccCcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccc
Confidence 34555667788899999999999999999999999999999999999999999999765 12
Q ss_pred ----------------------hHHH--HHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHcc
Q psy11254 567 ----------------------ESAR--LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622 (741)
Q Consensus 567 ----------------------~s~~--~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~ 622 (741)
+++. .++.+|+.|+.++||||||||||+++.+. .. ...+.+||++|+
T Consensus 1692 ~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~---~ltL~qLLneLD 1762 (2281)
T CHL00206 1692 DIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SN---YLSLGLLVNSLS 1762 (2281)
T ss_pred ccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cc---eehHHHHHHHhc
Confidence 2222 48999999999999999999999997542 11 124889999999
Q ss_pred CCC---CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHh--hcCccccCC-CCcccccccccccc
Q psy11254 623 GFD---SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH--AGPIAKHGE-IGDAATKWVLPFTA 696 (741)
Q Consensus 623 g~~---~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~--~~~~~~~~~-~~~~a~~~l~~~~s 696 (741)
|.. +..+|+||+|||+|+.+|||++||||||+.|+++.|+..+|.+++... .+.+....+ ++...+.......+
T Consensus 1763 g~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfS 1842 (2281)
T CHL00206 1763 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN 1842 (2281)
T ss_pred cccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCC
Confidence 864 356799999999999999999999999999999999999999998854 333333322 23344556677888
Q ss_pred cchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 697 GGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 697 ~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|++....+-+|+--.+.+........+|..++..+.
T Consensus 1843 GADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1843 ARDLVALTNEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 888888888888888888888899999999988774
No 67
>KOG0740|consensus
Probab=99.96 E-value=3.1e-29 Score=268.03 Aligned_cols=233 Identities=35% Similarity=0.609 Sum_probs=197.5
Q ss_pred ccCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc
Q psy11254 161 SHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL 240 (741)
Q Consensus 161 ~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~ 240 (741)
-....+++.|+|++|+++.|+.+.+.+.+|+..+.+|.++- .+.+|++|.||||+|||+|++|||.+.+..|..++.
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa-- 219 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA-- 219 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccH--
Confidence 34456789999999999999999999999999999999865 566789999999999999999999999999998876
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+.+.++|.|+.++.++.+|..|...+|.|+|+||+|+++.+|..
T Consensus 220 ---------------------------------ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~--- 263 (428)
T KOG0740|consen 220 ---------------------------------SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD--- 263 (428)
T ss_pred ---------------------------------HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---
Confidence 77889999999999999999999999999999999999999932
Q ss_pred CccHHHHHHHHHHHHhccCCC--CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc
Q psy11254 321 SADREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK 398 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~--~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~ 398 (741)
.......+...++|.++++.. ..++|.||+|||.|+.+|.+++| ||.+.+++|.|+++.|..++..+.... ...
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~--~~~ 339 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQ--PNG 339 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhC--CCC
Confidence 233334566677777776543 23589999999999999999999 999999999999999998854443333 122
Q ss_pred cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcc
Q psy11254 399 HGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSERE 436 (741)
Q Consensus 399 ~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~ 436 (741)
..+.++..+++.|+||+|.||.++|++|++..++....
T Consensus 340 l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 340 LSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred ccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 24567899999999999999999999999877665443
No 68
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.4e-28 Score=279.99 Aligned_cols=222 Identities=39% Similarity=0.598 Sum_probs=185.9
Q ss_pred CCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
+.++..+..++...+++++|+||||||||++|+++|++.+.+++.++++++...++|.....++.+|..|+...||||||
T Consensus 202 lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 202 LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 45677788889999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
||+|.++..|+...++.+.+...+++++|.+|||+....+++||+|||+++.+|+|++||||||+.|+|++|+.++|.+|
T Consensus 282 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~I 361 (638)
T CHL00176 282 DEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDI 361 (638)
T ss_pred ecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHH
Confidence 99999998886655555667788999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
|+.+++......+++...+....+..+++.....+.+++-..+......++.+++..++.-+
T Consensus 362 L~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 362 LKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999864433333333333334444555555555555444455566678889988887655
No 69
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.96 E-value=1.8e-30 Score=308.23 Aligned_cols=301 Identities=26% Similarity=0.355 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchh------h
Q psy11254 15 QDYRKKLTEHAEVEGRLREMREQLK---ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSEN------D 85 (741)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 85 (741)
.++||+|||..++.+|++.+...++ ++.++++++++++++.+++.|++||| +||+|+|++|||++++ +
T Consensus 175 ~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~L---reqlk~i~~eLg~~~~~~~~~~~ 251 (775)
T TIGR00763 175 KDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYL---REQLKAIKKELGIEKDDKDELEK 251 (775)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhCCCCCchhHHHH
Confidence 4678999999999999999999998 78889999999999999999999999 9999999999998543 3
Q ss_pred HHhhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCC
Q psy11254 86 LKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDP 165 (741)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (741)
+++ .++....|+.+ +.....++++..++..+++++++.+.|.+++..+||+....+.
T Consensus 252 ~~~-------------------k~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~ 308 (775)
T TIGR00763 252 LKE-------------------KLEELKLPEEV----KKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKEN 308 (775)
T ss_pred HHH-------------------HHHhcCCCHHH----HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccch
Confidence 333 56667788887 6667789999999999999999999999999999998766553
Q ss_pred CCC------CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecc
Q psy11254 166 GDI------TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS 239 (741)
Q Consensus 166 ~~~------~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~ 239 (741)
.++ --.+++|++++|++|.+++..+..... .....++|+||||||||+++++||+.++.++..++..
T Consensus 309 ~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~ 381 (775)
T TIGR00763 309 LDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG 381 (775)
T ss_pred hhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCC
Confidence 322 235689999999999998876432211 1112488999999999999999999999999888742
Q ss_pred cccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 240 LFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
. ..+...+.++ ...|.|...+++.+.|..+...+| |+||||||++.+..
T Consensus 382 ~----~~~~~~i~g~----------------------~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~---- 430 (775)
T TIGR00763 382 G----VRDEAEIRGH----------------------RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF---- 430 (775)
T ss_pred C----cccHHHHcCC----------------------CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc----
Confidence 1 1122222211 245777777778788888877777 89999999998532
Q ss_pred CCccHHHHHHHHHHHHh------ccCC----CCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 320 TSADREIQRTLMELLNQ------MDGF----DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~------l~~~----~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
+.|+ ...|.+++.. .+.+ ...+++.+|+|||.++.+++++++ ||+ .|+|+.|+..++..|
T Consensus 431 -~~~~--~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I 500 (775)
T TIGR00763 431 -RGDP--ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEI 500 (775)
T ss_pred -CCCH--HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHH
Confidence 2232 2344444432 0110 113578999999999999999998 885 789999999999887
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.96 E-value=5.4e-29 Score=292.31 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchh------hH
Q psy11254 16 DYRKKLTEHAEVEGRLREMREQLK---ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSEN------DL 86 (741)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 86 (741)
++||+|||..++.+|++.+...++ ++.++++++++++++.+++.|++||| +||+|+|++|||++++ ++
T Consensus 178 ~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~l---req~~~i~~elg~~~~~~~~~~~~ 254 (784)
T PRK10787 178 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYL---NEQMKAIQKELGEMDDAPDENEAL 254 (784)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---hhhhhhhcccccCCCcchhHHHHH
Confidence 468999999999999999999998 78889999999999999999999999 9999999999998543 33
Q ss_pred HhhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCC
Q psy11254 87 KALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG 166 (741)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (741)
++ .++....|+.+ +.....++.+..++...++++++.++|.+|+..+||+..+++..
T Consensus 255 ~~-------------------~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~ 311 (784)
T PRK10787 255 KR-------------------KIDAAKMPKEA----KEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKK 311 (784)
T ss_pred HH-------------------HHHhcCCCHHH----HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccc
Confidence 33 55667788777 66677899999999999999999999999999999999887765
Q ss_pred CC------CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc
Q psy11254 167 DI------TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL 240 (741)
Q Consensus 167 ~~------~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~ 240 (741)
++ --.+++|++++|++|.+++........ .....++|+|||||||||++++||+.++.++.+++..
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~- 383 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK-------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALG- 383 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcC-
Confidence 43 335699999999999999885332111 1112388999999999999999999999999888742
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+..+...+.++. ..|+|....++.+.+..+...+| |+||||+|++.....
T Consensus 384 ---~~~d~~~i~g~~----------------------~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~---- 433 (784)
T PRK10787 384 ---GVRDEAEIRGHR----------------------RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR---- 433 (784)
T ss_pred ---CCCCHHHhccch----------------------hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC----
Confidence 222333333322 35677777777777877776777 899999999975432
Q ss_pred CccHHHHHHHHHHHHh-----c-cC----CCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 321 SADREIQRTLMELLNQ-----M-DG----FDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~-----l-~~----~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
.|+ ...|.+++.. + +. ....+++.+|+|+|... ++++++. |++ .|.++.++.++..+|
T Consensus 434 -g~~--~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~I 501 (784)
T PRK10787 434 -GDP--ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNI 501 (784)
T ss_pred -CCH--HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHH
Confidence 222 2455555532 0 00 01247899999998884 9999988 885 688999999888777
No 71
>KOG0737|consensus
Probab=99.95 E-value=2.4e-28 Score=251.78 Aligned_cols=229 Identities=34% Similarity=0.528 Sum_probs=192.9
Q ss_pred ccccceeccCCChHHHHhcC-CCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a 579 (741)
.+.+.+.+|+..|++|...+ +.+++|+||+||||||||.+|+++|.+.+.+|+.|+++.+.++|+|++++.++.+|-.|
T Consensus 103 ~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslA 182 (386)
T KOG0737|consen 103 ALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLA 182 (386)
T ss_pred HHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhh
Confidence 34567788999999996433 57889999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCC--eEEEEeeCCCCCCCccccCCCCcceEEE
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ--VKMIMATNRPDTLDPALLRPGRLDRKIE 657 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~--v~vi~tTn~~~~ld~al~rpgR~d~~i~ 657 (741)
....||||||||+|++++.|.++. +.....+-++++..-||+.+.++ |+|++|||||..+|.|++| |+.+.++
T Consensus 183 sKl~P~iIFIDEvds~L~~R~s~d---HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~ 257 (386)
T KOG0737|consen 183 SKLQPSIIFIDEVDSFLGQRRSTD---HEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFH 257 (386)
T ss_pred hhcCcceeehhhHHHHHhhcccch---HHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceee
Confidence 999999999999999999993322 23345566788888899877665 9999999999999999999 9999999
Q ss_pred cCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHH----HHHHHhhhhhhhcC------------------
Q psy11254 658 IPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIY----IATVSVIPELLEDT------------------ 715 (741)
Q Consensus 658 ~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~----~a~~~~~~~l~~~~------------------ 715 (741)
++.|+..+|.+|++..++....+.+++...+.......+|.+.. .++...+++++..+
T Consensus 258 V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~ 337 (386)
T KOG0737|consen 258 VGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQA 337 (386)
T ss_pred eCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcc
Confidence 99999999999999999987777777777777777777777765 45556667777664
Q ss_pred ------CCcccHHHHHHHHHHHHHH
Q psy11254 716 ------SPKQTVKEILALLLGVFMM 734 (741)
Q Consensus 716 ------~~~~s~~~i~~~l~g~~~~ 734 (741)
...+.++++..+..+|+-+
T Consensus 338 ~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 338 AASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred cccccccCcccHHHHHHHHHhhhhH
Confidence 3456667777777777655
No 72
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.7e-27 Score=276.34 Aligned_cols=218 Identities=37% Similarity=0.581 Sum_probs=188.0
Q ss_pred ChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 512 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 512 ~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
++..+..++...+++++|+||||||||+++++++++++.+|+.++++++...|+|.+...++.+|..|+...||||||||
T Consensus 173 ~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDE 252 (644)
T PRK10733 173 EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDE 252 (644)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehh
Confidence 45556677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
+|.++.+|....++.+.+..++++++|.+|||+.+..+++||+|||+|+.+|+|++||||||+.|+|++|+.++|.+||+
T Consensus 253 iD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 332 (644)
T ss_pred HhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHH
Confidence 99999888765444555677899999999999988889999999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHH
Q psy11254 672 IHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLL 729 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~ 729 (741)
.|++..+...+++...+.......+++.+.....+++...+.......+..++..++.
T Consensus 333 ~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 333 VHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred HHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 9999876655555555555556666777777777776666666667788888876654
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.95 E-value=7.5e-27 Score=278.92 Aligned_cols=432 Identities=23% Similarity=0.338 Sum_probs=256.8
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceee
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKV 236 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v 236 (741)
+-.++.+.|.++.++++.+.+... ...+++|+||||||||++++.+|..+.. .+..+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345788999999999999987642 3346889999999999999999987642 12221
Q ss_pred ecccccchhhHHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 237 VSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.. ..++ .+|.|+.+++++.+|..+....|+||||||+|.|++.
T Consensus 242 ~~-----------------------------------~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~ 286 (821)
T CHL00095 242 DI-----------------------------------GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGA 286 (821)
T ss_pred eH-----------------------------------HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcC
Confidence 11 1121 3678999999999999998888999999999999987
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPI 389 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l 389 (741)
+...+ +.| .. ++|... ..++.+.+|++|+..+ ..|+++.+ ||. .+.++.|+..+...|+..+
T Consensus 287 g~~~g-~~~--~a----~lLkp~---l~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 287 GAAEG-AID--AA----NILKPA---LARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CCCCC-ccc--HH----HHhHHH---HhCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 64332 222 22 233221 1257889999998765 47889988 885 4788889988877763332
Q ss_pred hhccCC-Ccc-cCCCCHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHhh-hccccchHhHHHHHHHh-------cccc
Q psy11254 390 SIHAGP-IAK-HGEIDYEAVVKLSDSFNG-----ADLRNVCTEAGLFAIRS-EREYVTQEDFMKAVRKV-------SDNK 454 (741)
Q Consensus 390 ~~~~~~-~~~-~~~~~~~~la~~t~g~~g-----adi~~l~~~A~~~a~~~-~~~~i~~~d~~~a~~~~-------~~~~ 454 (741)
...... ... -.+-....++..+.+|.+ ...-.+..+|+....-. .........+.+.+... ....
T Consensus 354 ~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (821)
T CHL00095 354 RSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQ 433 (821)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCc
Confidence 211100 000 111124556666766643 22334555554432111 00000000000000000 0000
Q ss_pred c-----------------c-cccCcchhccccccccccccccchhHHHHHHHhhccccccccccc-------cccceecc
Q psy11254 455 K-----------------L-DHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLD-------YKPVIELP 509 (741)
Q Consensus 455 ~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~i~~~ 509 (741)
. . .....|.... ........++..++...+..+++.+....... +...+...
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ 510 (821)
T CHL00095 434 DFETAKQLRDREMEVRAQIAAIIQSKKTEE---EKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKR 510 (821)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCc
Confidence 0 0 0000000000 01123455777788888877776654221100 01111111
Q ss_pred CC-ChH----H-----HHhcCCCCC----CceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhc-----c----
Q psy11254 510 LL-NPE----L-----FQRVGITPP----KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVD-----K---- 563 (741)
Q Consensus 510 ~~-~~~----~-----~~~~~~~~~----~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~-----~---- 563 (741)
+. ..+ + ....|+..+ ..++|+||+|+|||++|+++|..+ ..+++.++++++.. +
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~ 590 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS 590 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence 11 111 1 113344322 247999999999999999999987 35788888877632 1
Q ss_pred ---ccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEE
Q psy11254 564 ---YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIM 634 (741)
Q Consensus 564 ---~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~ 634 (741)
|+|..+ .+.+....+..+.+|+||||+|. .++.+.+.+.++|++..-.++ ..++++|+
T Consensus 591 ~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek-----------a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 591 PPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK-----------AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred CCcccCcCc--cchHHHHHHhCCCeEEEECChhh-----------CCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 333222 23455666666679999999998 456667777777775332222 24788999
Q ss_pred eeCCCCC-------------------------------------CCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 635 ATNRPDT-------------------------------------LDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 635 tTn~~~~-------------------------------------ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
|||.... +.|+|+. |+|.+|.|.+++.++..+|++..+..+
T Consensus 658 Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 658 TSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred eCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9995321 2245565 999999999999999999999888754
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.95 E-value=2.6e-26 Score=272.71 Aligned_cols=474 Identities=18% Similarity=0.228 Sum_probs=269.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE 246 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~ 246 (741)
.-+++.+.|-++.++++.+.+.... ..+++|+||||||||++++.+|..+......... ...
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~-------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l----~~~- 244 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR-------------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL----RNV- 244 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC-------------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc----cCC-
Confidence 3467889999998888777664321 2357899999999999999999987432111000 000
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHh-cCCeEEEeccccccccccCCCCCCcc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARN-HQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~-~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
..+......+. ..|.|+.+.+++.+|..+.. ..+.||||||+|.+.+.+.+. .+.|
T Consensus 245 --------------------~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~~d 303 (852)
T TIGR03345 245 --------------------RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQGD 303 (852)
T ss_pred --------------------eEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-cccc
Confidence 00000011122 36789999999999998864 468899999999999876432 2334
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK 398 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~ 398 (741)
.. .+|.. ...++.+.+|++|+..+ .+|+++.| ||. .|.++.|+.++...| ++.....+..
T Consensus 304 ~~------n~Lkp---~l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~i---L~~~~~~~e~ 368 (852)
T TIGR03345 304 AA------NLLKP---ALARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRM---LRGLAPVLEK 368 (852)
T ss_pred HH------HHhhH---HhhCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHH---HHHHHHhhhh
Confidence 21 22221 12357899999998643 38999999 994 799999999999888 3333333332
Q ss_pred cCCC-----CHHHHHHhcCCCCH-----HHHHHHHHHHHHHHH-hhhccccchHhHHHH---------------------
Q psy11254 399 HGEI-----DYEAVVKLSDSFNG-----ADLRNVCTEAGLFAI-RSEREYVTQEDFMKA--------------------- 446 (741)
Q Consensus 399 ~~~~-----~~~~la~~t~g~~g-----adi~~l~~~A~~~a~-~~~~~~i~~~d~~~a--------------------- 446 (741)
+..+ .+..++..+.+|.. ...-.+..+|+.... .........++..+.
T Consensus 369 ~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (852)
T TIGR03345 369 HHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADH 448 (852)
T ss_pred cCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccch
Confidence 2222 24566677776632 223344444443221 111000000000000
Q ss_pred -----------------HHHh----ccccccc-------------cc---Ccc----h-------hcc-ccccccccccc
Q psy11254 447 -----------------VRKV----SDNKKLD-------------HC---NSY----R-------TEA-GLFAIRSEREY 477 (741)
Q Consensus 447 -----------------~~~~----~~~~~~~-------------~~---~~~----~-------~~~-~~~~~~~~~~~ 477 (741)
+... ....... .. ... . ... ...........
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (852)
T TIGR03345 449 DERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPE 528 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccce
Confidence 0000 0000000 00 000 0 000 00001234555
Q ss_pred cchhHHHHHHHhhcccccccccc-------ccccceeccCCC-hH----HH-----HhcCCCC---CC-ceEEEcCCCCC
Q psy11254 478 VTQEDFMKAVRKVSDNKKLESKL-------DYKPVIELPLLN-PE----LF-----QRVGITP---PK-GCLLYGPPGTG 536 (741)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~i~~~~~~-~~----~~-----~~~~~~~---~~-~~ll~G~~G~G 536 (741)
++..++...+..+++.+...... .+...+.-.+.. .+ +. ...|+.. |. .++|+||+|+|
T Consensus 529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvG 608 (852)
T TIGR03345 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVG 608 (852)
T ss_pred ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCC
Confidence 77777777777776655421110 000111111110 00 00 1224432 33 38999999999
Q ss_pred hHHHHHHHHHHh---CccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q psy11254 537 KTLLARAVASQL---DANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 601 (741)
Q Consensus 537 Kt~l~~~~a~~~---~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~ 601 (741)
||.+|+++|..+ ...++.++++++... |+|..+. ..+....+..+++||+|||++.
T Consensus 609 KT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEiek------- 679 (852)
T TIGR03345 609 KTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK------- 679 (852)
T ss_pred HHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhh-------
Confidence 999999999998 456888888876432 4443221 2344555667889999999987
Q ss_pred CCCcccHHHHHHHHHHHHHccCCCCC------CCeEEEEeeCCCC-----------------------------CCCccc
Q psy11254 602 EGTSADREIQRTLMELLNQMDGFDSL------GQVKMIMATNRPD-----------------------------TLDPAL 646 (741)
Q Consensus 602 ~~~~~~~~~~~~l~~lL~~~~g~~~~------~~v~vi~tTn~~~-----------------------------~ld~al 646 (741)
.++.+...+.++++...-.++. .++++|+|||... .+.|+|
T Consensus 680 ----a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 755 (852)
T TIGR03345 680 ----AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF 755 (852)
T ss_pred ----cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence 4556677888887754322222 4688999999521 145666
Q ss_pred cCCCCcceEEEcCCCCHHHHHHHHHHhhcCccc--------cCCCCcccccccccccc-cchHHHHHHHhhhh
Q psy11254 647 LRPGRLDRKIEIPLPNEQARLEILKIHAGPIAK--------HGEIGDAATKWVLPFTA-GGFIYIATVSVIPE 710 (741)
Q Consensus 647 ~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~--------~~~~~~~a~~~l~~~~s-~gf~~~a~~~~~~~ 710 (741)
+. |++ +|.|.+++.++..+|++.++..+.. ...+++.+..++..... ..+-.....+++..
T Consensus 756 ln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 756 LG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred hc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 66 998 8999999999999999998765421 12455555555544322 22334444444433
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-27 Score=265.68 Aligned_cols=483 Identities=22% Similarity=0.280 Sum_probs=291.5
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
+.+-.++-+.|-++.++++.+.+.....+.+ +|+|+||+|||.++.-+|..+-..-+--........
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNP-------------vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSRRTKNNP-------------VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhccCCCCC-------------eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3455678899999999999999886555443 499999999999999999876331110000000000
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
.-|++.+. --.+|-|+.+.+++.++.......+.||||||+|.|.+.+...+.+.|.
T Consensus 231 sLD~g~Lv-----------------------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DA 287 (786)
T COG0542 231 SLDLGSLV-----------------------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDA 287 (786)
T ss_pred EecHHHHh-----------------------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccch
Confidence 00111110 1147889999999999999998889999999999999887543323443
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~ 399 (741)
..+|+- ..+++.+.+|+||..-+ .-|+||.| || ..|.+..|+.++-..| ++-....+..+
T Consensus 288 ------aNiLKP---aLARGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~I---LrGlk~~yE~h 352 (786)
T COG0542 288 ------ANLLKP---ALARGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAI---LRGLKERYEAH 352 (786)
T ss_pred ------hhhhHH---HHhcCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHH---HHHHHHHHHHc
Confidence 233332 22357889999987433 45889999 88 4688999999998888 55444555555
Q ss_pred CCCCH-----HHHHHhc-----CCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccccccc---cc-Ccchhc
Q psy11254 400 GEIDY-----EAVVKLS-----DSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLD---HC-NSYRTE 465 (741)
Q Consensus 400 ~~~~~-----~~la~~t-----~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~---~~-~~~~~~ 465 (741)
+.+.+ ...+.++ +.|.+.---.+..+|+....-........+.+...+.......... .. ......
T Consensus 353 H~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~ 432 (786)
T COG0542 353 HGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLI 432 (786)
T ss_pred cCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55433 2333443 4444444456666665543221111111111111111100000000 00 000000
Q ss_pred --------cccccc--cccccccchhHHHHHHHhhcccccccccc-------ccccceeccCCC-h---------HHHHh
Q psy11254 466 --------AGLFAI--RSEREYVTQEDFMKAVRKVSDNKKLESKL-------DYKPVIELPLLN-P---------ELFQR 518 (741)
Q Consensus 466 --------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~i~~~~~~-~---------~~~~~ 518 (741)
...... .... .++.+++...+..+++.+.-.... .+...+.-.+.. . -...+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraR 511 (786)
T COG0542 433 DEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRAR 511 (786)
T ss_pred HHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHh
Confidence 000000 0001 156677777777776655321100 001111111110 0 01124
Q ss_pred cCCCCC----CceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhhhcc------------ccchHHHHHHHHHHHH
Q psy11254 519 VGITPP----KGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAIVDK------------YIGESARLIREMFNYA 579 (741)
Q Consensus 519 ~~~~~~----~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a 579 (741)
.|+..+ ..++|.||+|+|||-||+++|..+. ..++.+++|++..+ |+|..+ =..+.+..
T Consensus 512 aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaV 589 (786)
T COG0542 512 AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAV 589 (786)
T ss_pred cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhh
Confidence 455433 3589999999999999999999996 67999999987543 555433 24667777
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCC------CeEEEEeeCCC--------------
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG------QVKMIMATNRP-------------- 639 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~------~v~vi~tTn~~-------------- 639 (741)
|..+.||++||||+. +++++.++|.|+|+.-.-.++.+ +++||||||--
T Consensus 590 Rr~PySViLlDEIEK-----------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~ 658 (786)
T COG0542 590 RRKPYSVILLDEIEK-----------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFA 658 (786)
T ss_pred hcCCCeEEEechhhh-----------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccc
Confidence 888899999999998 67888888888888666566665 57899999932
Q ss_pred --------------CCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcccc-------CCCCcccccccccc-ccc
Q psy11254 640 --------------DTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH-------GEIGDAATKWVLPF-TAG 697 (741)
Q Consensus 640 --------------~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~-------~~~~~~a~~~l~~~-~s~ 697 (741)
..+.|+|+. |+|.+|.|.+.+.+...+|...++..+... -.+++.+..|+... ...
T Consensus 659 ~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~ 736 (786)
T COG0542 659 DKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDP 736 (786)
T ss_pred hhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCC
Confidence 123456666 999999999999999999999998754321 24555555555432 223
Q ss_pred chHHHHHHHhhhhhhhc
Q psy11254 698 GFIYIATVSVIPELLED 714 (741)
Q Consensus 698 gf~~~a~~~~~~~l~~~ 714 (741)
.|-.....++++.-+++
T Consensus 737 ~~GARpL~R~Iq~~i~~ 753 (786)
T COG0542 737 EYGARPLRRAIQQEIED 753 (786)
T ss_pred CcCchHHHHHHHHHHHH
Confidence 44445555555444433
No 76
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=1.3e-26 Score=241.46 Aligned_cols=214 Identities=20% Similarity=0.249 Sum_probs=153.3
Q ss_pred Ccccc-cChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 169 TYSAI-GGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 169 ~~~~i-~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
+++++ ||+--.+.-+...+.. . .+..+...++.+|.|++|+||||||||.++++||++++.++..+++
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~h-i-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa--------- 181 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVH-I-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA--------- 181 (413)
T ss_pred chhhhcCccccCHHHHHHHHHH-H-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH---------
Confidence 45555 6665544444433322 1 1223344688999999999999999999999999999999998886
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh-----cCCeEEEeccccccccccCCCCCCc
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN-----HQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~-----~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
.++.++|+|+.++.+|+.|..|.. .+||||||||||++++.+.+ +..
T Consensus 182 --------------------------~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~--~~~ 233 (413)
T PLN00020 182 --------------------------GELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT--TQY 233 (413)
T ss_pred --------------------------HHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC--CCc
Confidence 677889999999999999999975 47999999999999998852 222
Q ss_pred cHHHHHHHHHHHHhccCC------------CCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccch
Q psy11254 323 DREIQRTLMELLNQMDGF------------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPIS 390 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~------------~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~ 390 (741)
....+....++++.+|+. ....+|.||+|||+++.||++++|+||||+.+ +.|+.++|.+| ++
T Consensus 234 tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eI---L~ 308 (413)
T PLN00020 234 TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGV---VH 308 (413)
T ss_pred chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHH---HH
Confidence 222333335666666542 34578999999999999999999999999965 58999999999 66
Q ss_pred hccCCCcccCCCCHHHHHHhcCC----CCHHHHHHHHHHHH
Q psy11254 391 IHAGPIAKHGEIDYEAVVKLSDS----FNGADLRNVCTEAG 427 (741)
Q Consensus 391 ~~~~~~~~~~~~~~~~la~~t~g----~~gadi~~l~~~A~ 427 (741)
.+....... ..+...++....| |.||--..++.++.
T Consensus 309 ~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v 348 (413)
T PLN00020 309 GIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEV 348 (413)
T ss_pred HHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHH
Confidence 655543221 2334444444433 34444444444443
No 77
>KOG0732|consensus
Probab=99.94 E-value=4.1e-27 Score=271.80 Aligned_cols=188 Identities=45% Similarity=0.728 Sum_probs=166.2
Q ss_pred cccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhC-----ccEEEEechhhhccccchHHHHHHH
Q psy11254 500 LDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSAIVDKYIGESARLIRE 574 (741)
Q Consensus 500 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~-----~~~~~v~~~~l~~~~~g~s~~~i~~ 574 (741)
..+++.+.+|+.+|+.|.++++.|++|+||+||||||||..|+++|..+. ..|+.-++++..++|+|+.++.++.
T Consensus 275 ~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrl 354 (1080)
T KOG0732|consen 275 NQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRL 354 (1080)
T ss_pred HHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHH
Confidence 35677889999999999999999999999999999999999999999883 4577789999999999999999999
Q ss_pred HHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcce
Q psy11254 575 MFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDR 654 (741)
Q Consensus 575 ~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~ 654 (741)
+|+.|+...|+|+||||||.+++.|++.-.. .-..++.+||.-|||+++.++|+||+|||||+.+|||+.||||||+
T Consensus 355 lFeeA~k~qPSIIffdeIdGlapvrSskqEq---ih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdr 431 (1080)
T KOG0732|consen 355 LFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ---IHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDR 431 (1080)
T ss_pred HHHHHhccCceEEeccccccccccccchHHH---hhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccce
Confidence 9999999999999999999999999554322 2346889999999999999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccc
Q psy11254 655 KIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVL 692 (741)
Q Consensus 655 ~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~ 692 (741)
.++||+|+.++|.+|+.+|...-. ..+......+++
T Consensus 432 ef~f~lp~~~ar~~Il~Ihtrkw~--~~i~~~l~~~la 467 (1080)
T KOG0732|consen 432 EFYFPLPDVDARAKILDIHTRKWE--PPISRELLLWLA 467 (1080)
T ss_pred eEeeeCCchHHHHHHHHHhccCCC--CCCCHHHHHHHH
Confidence 999999999999999999987543 344444444443
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=1.1e-24 Score=259.68 Aligned_cols=477 Identities=21% Similarity=0.283 Sum_probs=262.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-.++.+.|-++.++++.+.++... ..+++|+||||||||++++.+|..+......... .+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~-------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l----~~--- 234 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT-------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL----KG--- 234 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC-------------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhh----CC---
Confidence 457789999998888888775421 2347899999999999999999987431100000 00
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHH-hcCCeEEEeccccccccccCCCCCCccH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYAR-NHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~-~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
...+......++ .+|.|+.+++++..|..+. ...|+||||||+|.|.+.+.+.+ +.|.
T Consensus 235 ------------------~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~ 295 (857)
T PRK10865 235 ------------------RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA 295 (857)
T ss_pred ------------------CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhH
Confidence 000000001111 3578999999999998754 35789999999999987764332 2332
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC-----CCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT-----LDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~-----ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~ 399 (741)
... |. ....++.+.+|++|+..+. +|+++.| ||+ .|.++.|+.+++..| ++.....+..+
T Consensus 296 --~~~----lk---p~l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~i---L~~l~~~~e~~ 360 (857)
T PRK10865 296 --GNM----LK---PALARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAI---LRGLKERYELH 360 (857)
T ss_pred --HHH----hc---chhhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHH---HHHHhhhhccC
Confidence 222 22 2234678999999987763 8999999 997 578999999998887 43333333333
Q ss_pred CCCC-----HHHHHHhcCCCC-----HHHHHHHHHHHHHHH-Hh-------------------hhccccch---------
Q psy11254 400 GEID-----YEAVVKLSDSFN-----GADLRNVCTEAGLFA-IR-------------------SEREYVTQ--------- 440 (741)
Q Consensus 400 ~~~~-----~~~la~~t~g~~-----gadi~~l~~~A~~~a-~~-------------------~~~~~i~~--------- 440 (741)
..+. ....+..+..|. ......++..++... +. .....+..
T Consensus 361 ~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~ 440 (857)
T PRK10865 361 HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKR 440 (857)
T ss_pred CCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3222 122334444442 111111222111100 00 00000000
Q ss_pred -----HhHHHHHHH-------hcccc-----------c-------c---cccCc--------chhccc----c-------
Q psy11254 441 -----EDFMKAVRK-------VSDNK-----------K-------L---DHCNS--------YRTEAG----L------- 468 (741)
Q Consensus 441 -----~d~~~a~~~-------~~~~~-----------~-------~---~~~~~--------~~~~~~----~------- 468 (741)
+.+.+..+. +.... . . ..... +..... +
T Consensus 441 ~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (857)
T PRK10865 441 LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE 520 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh
Confidence 000000000 00000 0 0 00000 000000 0
Q ss_pred -ccccccccccchhHHHHHHHhhcccccccccc-------ccccceeccC-CChH----HHH-----hcCCCCC----Cc
Q psy11254 469 -FAIRSEREYVTQEDFMKAVRKVSDNKKLESKL-------DYKPVIELPL-LNPE----LFQ-----RVGITPP----KG 526 (741)
Q Consensus 469 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~i~~~~-~~~~----~~~-----~~~~~~~----~~ 526 (741)
.........++.+++...+..+++.+...... .+...+.-.+ .... +.. ..|+..+ ..
T Consensus 521 ~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 521 GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 00111236678888888888877665432110 0111111011 1111 111 2233322 25
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 527 CLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 527 ~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
++|+||||||||++|++++..+ +.+++.++++++... |+|... -..+....+..+.+||||||
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEee
Confidence 8999999999999999999887 356888888776432 222211 11233333444558999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEEeeCCC-------------------------C
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIMATNRP-------------------------D 640 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~tTn~~-------------------------~ 640 (741)
++. .++.....+.++|+.-.-.++ ..++++|+|||.. .
T Consensus 679 iek-----------a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (857)
T PRK10865 679 VEK-----------AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSH 747 (857)
T ss_pred hhh-----------CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcc
Confidence 987 345667777777765321121 2357899999973 1
Q ss_pred CCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccc-------cCCCCcccccccccc-cccchHHHHHHHhhhhhh
Q psy11254 641 TLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAK-------HGEIGDAATKWVLPF-TAGGFIYIATVSVIPELL 712 (741)
Q Consensus 641 ~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~-------~~~~~~~a~~~l~~~-~s~gf~~~a~~~~~~~l~ 712 (741)
.+.|+|+. |+|.++.|.+++.+....|++.++..+.. ...+++.+..++... ....+-.....+++...+
T Consensus 748 ~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 748 NFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred cccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 34567776 99999999999999999999988875421 224566666665542 223333444444444443
Q ss_pred h
Q psy11254 713 E 713 (741)
Q Consensus 713 ~ 713 (741)
.
T Consensus 826 ~ 826 (857)
T PRK10865 826 E 826 (857)
T ss_pred H
Confidence 3
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.93 E-value=1.5e-24 Score=259.81 Aligned_cols=441 Identities=22% Similarity=0.311 Sum_probs=250.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-.++.+.|-++.++++.+.+... ...+.+|+||||||||++++.+|..+.......... +.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~----~~-- 230 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK----NK-- 230 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcC-------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc----CC--
Confidence 35677899999888888776532 123477999999999999999998763321100000 00
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHh-cCCeEEEeccccccccccCCCCCCccH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARN-HQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~-~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+ .+......++ .+|.|+.+++++..|..+.. ..|.||||||+|.|++.+.+.+ +.|
T Consensus 231 -----------~--------~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~d- 289 (852)
T TIGR03346 231 -----------R--------LLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMD- 289 (852)
T ss_pred -----------e--------EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hhH-
Confidence 0 0000001111 35778899999999998865 3589999999999987553322 122
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~ 399 (741)
..++|.. ...++.+.+|++|+..+ .+|+++.| ||. .+.++.|+.+++..| +......+..+
T Consensus 290 -----~~~~Lk~---~l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~i---L~~~~~~~e~~ 355 (852)
T TIGR03346 290 -----AGNMLKP---ALARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISI---LRGLKERYEVH 355 (852)
T ss_pred -----HHHHhch---hhhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHH---HHHHHHHhccc
Confidence 1233322 22357899999998764 37999999 995 578999999999888 44444444444
Q ss_pred CCC-----CHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHhh-hcc-------------------ccch---------
Q psy11254 400 GEI-----DYEAVVKLSDSFN-----GADLRNVCTEAGLFAIRS-ERE-------------------YVTQ--------- 440 (741)
Q Consensus 400 ~~~-----~~~~la~~t~g~~-----gadi~~l~~~A~~~a~~~-~~~-------------------~i~~--------- 440 (741)
..+ .+...+..+.+|. +...-.+..+|+....-. ... .+..
T Consensus 356 ~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (852)
T TIGR03346 356 HGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKER 435 (852)
T ss_pred cCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 333 2345566666663 223334444444322100 000 0000
Q ss_pred -HhHHHH-------HHHh----cccc----------------c-----ccccC--------cch-------hc-------
Q psy11254 441 -EDFMKA-------VRKV----SDNK----------------K-----LDHCN--------SYR-------TE------- 465 (741)
Q Consensus 441 -~d~~~a-------~~~~----~~~~----------------~-----~~~~~--------~~~-------~~------- 465 (741)
+.+... .... .... . ..... .+. ..
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (852)
T TIGR03346 436 LEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKL 515 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHh
Confidence 000000 0000 0000 0 00000 000 00
Q ss_pred cccccccccccccchhHHHHHHHhhcccccccccc-------ccccceec-cCCChH----HHH-----hcCCC----CC
Q psy11254 466 AGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKL-------DYKPVIEL-PLLNPE----LFQ-----RVGIT----PP 524 (741)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~i~~-~~~~~~----~~~-----~~~~~----~~ 524 (741)
............++.+++...+..+++.+...... .+...+.- -+.... +.. ..|+. |.
T Consensus 516 ~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~ 595 (852)
T TIGR03346 516 GEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPI 595 (852)
T ss_pred hhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCC
Confidence 00000112444566777777777765544321000 00000000 011111 111 22332 23
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
..++|+||+|||||++|+++|..+ +.+++.++++++... |+|..+ .+.+....+..+.+||||
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlll 673 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLF 673 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEE
Confidence 458999999999999999999987 457888888765332 222211 123444455566689999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEEeeCCCC-----------------------
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIMATNRPD----------------------- 640 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~tTn~~~----------------------- 640 (741)
||++. .++.+...+.++|++-.-.++ ..+++||+|||...
T Consensus 674 Deiek-----------a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~ 742 (852)
T TIGR03346 674 DEVEK-----------AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVL 742 (852)
T ss_pred ecccc-----------CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHH
Confidence 99997 456677788888865432222 24688999999732
Q ss_pred --CCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 641 --TLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 641 --~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
.+.|.|+. |||.++.|.+++.+...+|+..++..+
T Consensus 743 ~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 743 RAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred HhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 13355665 999999999999999999999887643
No 80
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-26 Score=267.58 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=122.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----cc--h----hhHHHHHhh
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----VT--S----KEDMAILMG 253 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----~~--~----~~~~~~~~~ 253 (741)
+.+.++...+|++++|.+.+| ++|+||||||||||+|+|+|.+.++.|.|..... +. . ...+.++..
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~ 86 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVID 86 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHH
Confidence 456677778999999999999 8899999999999999999998888777653211 00 0 001111100
Q ss_pred ------------------------------------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHH
Q psy11254 254 ------------------------------------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYAR 296 (741)
Q Consensus 254 ------------------------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~ 296 (741)
.....++..+++.+++. ......+..+|||+++++ .|++|+
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv--~LA~aL 164 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL--NLAQAL 164 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH--HHHHHH
Confidence 01123455567777775 355778999999999999 999999
Q ss_pred hcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 297 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 297 ~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
..+|+|||||| |++++|+....||.++|..+.+ +||++||++++++..+.+
T Consensus 165 ~~~P~lLLLDE----------Ptn~LD~~~~~~L~~~L~~~~~-------tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 165 ICRSDLLLLDE----------PTNHLDLDAVIWLEKWLKSYQG-------TLILISHDRDFLDPIVDK 215 (638)
T ss_pred ccCCCEEEEcC----------CCCcCCHHHHHHHHHHHHhCCC-------eEEEEeCCHHHHHHhcCE
Confidence 99999999999 9999999999999999987632 899999999998865544
No 81
>KOG0740|consensus
Probab=99.93 E-value=2.4e-26 Score=245.90 Aligned_cols=200 Identities=37% Similarity=0.563 Sum_probs=165.0
Q ss_pred cccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHH
Q psy11254 500 LDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579 (741)
Q Consensus 500 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a 579 (741)
..+.+.+.+|+..+++|..+ ..+.+++||.||||+|||++++++|.+.+..|+.+++++|.++|+|++++.++.+|+.|
T Consensus 163 ~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vA 241 (428)
T KOG0740|consen 163 QSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVA 241 (428)
T ss_pred HHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHH
Confidence 34566778999999999865 35678999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC--CCCCeEEEEeeCCCCCCCccccCCCCcceEEE
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIE 657 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~--~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~ 657 (741)
+..+|+|+|+||+|+++.+|...... ...+...++|.+.+|.. +.++|+||+|||+||.+|.|+.| ||.++++
T Consensus 242 r~~qPsvifidEidslls~Rs~~e~e---~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~y 316 (428)
T KOG0740|consen 242 RSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLY 316 (428)
T ss_pred HhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--Hhhceee
Confidence 99999999999999999999443332 34578888999888874 34589999999999999999999 9999999
Q ss_pred cCCCCHHHHHHHHHHhhcCccccCCCCcccc---cccccccccchHHHHHHHh
Q psy11254 658 IPLPNEQARLEILKIHAGPIAKHGEIGDAAT---KWVLPFTAGGFIYIATVSV 707 (741)
Q Consensus 658 ~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~---~~l~~~~s~gf~~~a~~~~ 707 (741)
+|+|++++|..||+..++.- ...+++.+. ..+....+++.+.-...++
T Consensus 317 iplPd~etr~~~~~~ll~~~--~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 317 IPLPDYETRSLLWKQLLKEQ--PNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred ecCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999998864 223443333 3333444444444444433
No 82
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=1.1e-24 Score=254.57 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=119.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--------------ch-hhHHH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--------------TS-KEDMA 249 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--------------~~-~~~~~ 249 (741)
+.+.+....+|++++|.++.| ++|+||||||||||+|+|+|.+.++.|.+...... .. ...+.
T Consensus 9 ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~ 88 (635)
T PRK11147 9 AWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVA 88 (635)
T ss_pred EEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHH
Confidence 445566677999999999999 88999999999999999999998887776532100 00 00000
Q ss_pred ------------------------------HHh----------hhhhhhcccccccccccCCCccchhhhhcchHHHHHH
Q psy11254 250 ------------------------------ILM----------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIR 289 (741)
Q Consensus 250 ------------------------------~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~ 289 (741)
... +.....++..+++.+++. ....+..+|||+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv- 165 (635)
T PRK11147 89 EGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKA- 165 (635)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHH-
Confidence 000 001123445556666664 3678899999999999
Q ss_pred HHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 290 EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 290 ~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|++|+..+|+|||||| |++++|+..+.+|.++|..+.+ +||++||++++++..+.+
T Consensus 166 -~LAraL~~~P~lLLLDE----------Pt~~LD~~~~~~L~~~L~~~~~-------tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 166 -ALGRALVSNPDVLLLDE----------PTNHLDIETIEWLEGFLKTFQG-------SIIFISHDRSFIRNMATR 222 (635)
T ss_pred -HHHHHHhcCCCEEEEcC----------CCCccCHHHHHHHHHHHHhCCC-------EEEEEeCCHHHHHHhcCe
Confidence 99999999999999999 9999999999999999988742 899999999998865544
No 83
>KOG0062|consensus
Probab=99.91 E-value=8.2e-24 Score=225.60 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=116.6
Q ss_pred HHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCc----eeeecc-------cccchhhHHHH
Q psy11254 184 REVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANF----LKVVSS-------LFVTSKEDMAI 250 (741)
Q Consensus 184 ~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~----~~v~~~-------~~~~~~~~~~~ 250 (741)
.+.+.+.++.+.++.+.++++.+| .+|+|+||+|||||+|+||. ..... .++.+. ..........+
T Consensus 83 ~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~df 161 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-GQVSGFHVEQEVRGDDTEALQSVLESDTERLDF 161 (582)
T ss_pred eeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-cCcCccCchhheeccchHHHhhhhhccHHHHHH
Confidence 345678889999999999999988 99999999999999999998 11111 111111 00000011111
Q ss_pred Hhhh-------hhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 251 LMGN-------QLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 251 ~~~~-------~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+..+ +........|..+||... ....+..+|||++.++ ++++|+..+|++|+||| |||++
T Consensus 162 l~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrl--aLARAlf~~pDlLLLDE----------PTNhL 229 (582)
T KOG0062|consen 162 LAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRL--ALARALFAKPDLLLLDE----------PTNHL 229 (582)
T ss_pred HHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHH--HHHHHHhcCCCEEeecC----------Ccccc
Confidence 1111 111111225556666543 4678899999999998 99999999999999999 99999
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|.....||...|..+.. ++|+++||..+||..+..
T Consensus 230 Dv~av~WLe~yL~t~~~-------T~liVSHDr~FLn~V~td 264 (582)
T KOG0062|consen 230 DVVAVAWLENYLQTWKI-------TSLIVSHDRNFLNTVCTD 264 (582)
T ss_pred hhHHHHHHHHHHhhCCc-------eEEEEeccHHHHHHHHHH
Confidence 99999999999987653 899999999999977754
No 84
>KOG0927|consensus
Probab=99.91 E-value=5e-24 Score=228.48 Aligned_cols=165 Identities=22% Similarity=0.248 Sum_probs=117.3
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------c-chh--
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------V-TSK-- 245 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------~-~~~-- 245 (741)
++++.+....++++..|.+.+| ++|+|||||||||++++|++..-|.-..+....+ + ...
T Consensus 80 sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e 159 (614)
T KOG0927|consen 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHE 159 (614)
T ss_pred eeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHH
Confidence 3455666778889999999998 9999999999999999999987653222211100 0 000
Q ss_pred --------hHHHHH-------------------hhhhhhhccccccccccc-CCCccchhhhhcchHHHHHHHHHHHHHh
Q psy11254 246 --------EDMAIL-------------------MGNQLKRRSTHHLEKTYF-PFYSSAIVDKYIGESARLIREMFNYARN 297 (741)
Q Consensus 246 --------~~~~~~-------------------~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~G~~~~~v~~~~~~A~~ 297 (741)
+++... ..+....++...+-.+++ .......+..+|||+..|+ ++++++.
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~--aLAr~Lf 237 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA--ALARALF 237 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH--HHHHHHh
Confidence 000000 000112223333333332 3345677889999999988 9999999
Q ss_pred cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCcc
Q psy11254 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRL 368 (741)
Q Consensus 298 ~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~ 368 (741)
.+|++|+||| |++|+|.+...||.++|..++.. ++|+++|+.++|+..|...-.+
T Consensus 238 ~kP~LLLLDE----------PtnhLDleA~~wLee~L~k~d~~------~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 238 QKPDLLLLDE----------PTNHLDLEAIVWLEEYLAKYDRI------ILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred cCCCEEEecC----------CccCCCHHHHHHHHHHHHhccCc------eEEEEecchhhhhhHhhhhhee
Confidence 9999999999 99999999999999999998751 6899999999999988874433
No 85
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-23 Score=236.41 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=117.8
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----c----------cchhhHHH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----F----------VTSKEDMA 249 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~----------~~~~~~~~ 249 (741)
+.+.+....+|++++|++.+| ++|+||||||||||+|+|+|.+.++.|.+.... + .+..+.+.
T Consensus 7 ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 86 (530)
T PRK15064 7 ITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86 (530)
T ss_pred EEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHH
Confidence 344455567999999999999 889999999999999999999988766654321 0 01111111
Q ss_pred HHh--------------------------------------hhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHH
Q psy11254 250 ILM--------------------------------------GNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIRE 290 (741)
Q Consensus 250 ~~~--------------------------------------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~ 290 (741)
... +.....++..+++.+++... ....+..+|||+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv-- 164 (530)
T PRK15064 87 MGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV-- 164 (530)
T ss_pred HhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH--
Confidence 000 00112345566677777543 2457899999999999
Q ss_pred HHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 291 MFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 291 ~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
.|++|+..+|.|||||| |++++|+..+.++.+++.+. +.+||++||+++.+...+.+
T Consensus 165 ~lA~aL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 165 LLAQALFSNPDILLLDE----------PTNNLDINTIRWLEDVLNER-------NSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhC-------CCeEEEEeCCHHHHHhhcce
Confidence 99999999999999999 99999999999999998642 45899999999988754443
No 86
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=1.2e-22 Score=234.51 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=117.9
Q ss_pred hhccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----c----------cchhhHH
Q psy11254 187 IELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----F----------VTSKEDM 248 (741)
Q Consensus 187 i~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~----------~~~~~~~ 248 (741)
+.+.+. +..+|++++|+++.| ++|+||||||||||+++|+|.+.+..|.+.... + .+..+++
T Consensus 12 l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l 91 (556)
T PRK11819 12 VSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENV 91 (556)
T ss_pred EEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHH
Confidence 344454 467899999999999 889999999999999999999988777764210 0 1112222
Q ss_pred HHHhh------------------------------------------hhhhhcccccccccccCCCccchhhhhcchHHH
Q psy11254 249 AILMG------------------------------------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286 (741)
Q Consensus 249 ~~~~~------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~ 286 (741)
..... .....++..+++.+++.. ....+..+|||+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkq 170 (556)
T PRK11819 92 EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERR 170 (556)
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHH
Confidence 21000 001223444556666643 46788999999999
Q ss_pred HHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 287 ~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++ .|++|+..+|+|||||| |++++|+....++.+++..+.+ +||++||+++++...+.
T Consensus 171 rv--~la~al~~~p~vlLLDE----------Pt~~LD~~~~~~l~~~L~~~~~-------tviiisHd~~~~~~~~d 228 (556)
T PRK11819 171 RV--ALCRLLLEKPDMLLLDE----------PTNHLDAESVAWLEQFLHDYPG-------TVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HH--HHHHHHhCCCCEEEEcC----------CCCcCChHHHHHHHHHHHhCCC-------eEEEEeCCHHHHHhhcC
Confidence 99 99999999999999999 9999999999999999987642 89999999998875443
No 87
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=1.8e-22 Score=232.87 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=115.2
Q ss_pred hhccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc---------------ccchhhHH
Q psy11254 187 IELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL---------------FVTSKEDM 248 (741)
Q Consensus 187 i~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~---------------~~~~~~~~ 248 (741)
+.+.+. .+.++++++|.++.| ++|+||||||||||+++|+|.+.+..|.+.... ..+..+++
T Consensus 10 ls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i 89 (552)
T TIGR03719 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENV 89 (552)
T ss_pred EEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHH
Confidence 344454 456899999999999 889999999999999999999988777664310 01122222
Q ss_pred HHHhhh-------------------h-----------------------hhhcccccccccccCCCccchhhhhcchHHH
Q psy11254 249 AILMGN-------------------Q-----------------------LKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286 (741)
Q Consensus 249 ~~~~~~-------------------~-----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~ 286 (741)
...... . ...++..+++.+++.. ....+..+|||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkq 168 (552)
T TIGR03719 90 EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERR 168 (552)
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHH
Confidence 211000 0 0112233444455532 46678999999999
Q ss_pred HHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 287 ~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++ .|++|+..+|++|+||| |++++|+....++.+++..+.+ +||++||++++++..+.
T Consensus 169 rv--~la~al~~~p~lLLLDE----------Pt~~LD~~~~~~l~~~L~~~~~-------tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 169 RV--ALCRLLLSKPDMLLLDE----------PTNHLDAESVAWLEQHLQEYPG-------TVVAVTHDRYFLDNVAG 226 (552)
T ss_pred HH--HHHHHHhcCCCEEEEcC----------CCCCCChHHHHHHHHHHHhCCC-------eEEEEeCCHHHHHhhcC
Confidence 99 99999999999999999 9999999999999999887632 89999999998875443
No 88
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=7.2e-23 Score=233.32 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=122.0
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c-c-hh----hHHHHHhh----
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V-T-SK----EDMAILMG---- 253 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~-~-~~----~~~~~~~~---- 253 (741)
+.+.+....++++++|++.+| ++|+||||||||||+|+|+|.+.+..+.+..... . . .. ..+++..+
T Consensus 9 l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 9 GTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred EEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 344555556899999999999 7899999999999999999999888777653211 0 0 00 00111000
Q ss_pred ---------------------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 254 ---------------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 254 ---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
.....++..+++.+++.......+.++|||+++++ +|++|+..+|.+||+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE----- 161 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKT--LLCQALMSEPDLLILDE----- 161 (490)
T ss_pred hhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEcC-----
Confidence 01123445566667776666788899999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+.++.+++.++.. .+.+||++||+++.+...+.
T Consensus 162 -----Pt~~LD~~~~~~l~~~l~~~~~----~g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 162 -----PFDGLDVASRQQLAELLASLHQ----SGITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred -----CcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCC
Confidence 9999999999999999998854 36789999999988764443
No 89
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=229.72 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=120.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
+.+.+.+..++++++|++++| ++|+||||||||||+++|+|.+.+..|++......
T Consensus 4 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 83 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN 83 (491)
T ss_pred eEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc
Confidence 344455567899999999999 78999999999999999999998877776432110
Q ss_pred -----chhhHHHHHh----h-----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 -----TSKEDMAILM----G-----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 -----~~~~~~~~~~----~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+++.... + .....++..+++.+++.......+..+|||+++++ .|++|+..+|.||++||
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lA~al~~~p~lllLDE- 160 (491)
T PRK10982 84 LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMI--EIAKAFSYNAKIVIMDE- 160 (491)
T ss_pred cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH--HHHHHHHhCCCEEEEeC-
Confidence 0011111100 0 01122344556666766666778899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+.++.+++.++.. .+.+||++||+++.+...+
T Consensus 161 ---------Pt~~LD~~~~~~l~~~l~~l~~----~g~tvii~tH~~~~~~~~~ 201 (491)
T PRK10982 161 ---------PTSSLTEKEVNHLFTIIRKLKE----RGCGIVYISHKMEEIFQLC 201 (491)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHHhC
Confidence 9999999999999999988753 3568999999998775433
No 90
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=2e-22 Score=236.06 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=114.2
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc---CCCceeeeccc-c-----cch-------h-
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL---DANFLKVVSSL-F-----VTS-------K- 245 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l---~~~~~~v~~~~-~-----~~~-------~- 245 (741)
+.+.+.|+...+|++++|++..| ++|+||||||||||+|+|+|.. -++.+++.... . ... .
T Consensus 181 ~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~ 260 (718)
T PLN03073 181 ENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI 260 (718)
T ss_pred ceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence 34566676777999999999999 8999999999999999999853 23333332100 0 000 0
Q ss_pred -------hHHHHHhh-----------------------h-------------------hhhhcccccccccccC-CCccc
Q psy11254 246 -------EDMAILMG-----------------------N-------------------QLKRRSTHHLEKTYFP-FYSSA 275 (741)
Q Consensus 246 -------~~~~~~~~-----------------------~-------------------~~~~~~~~~l~~~~~~-~~~~~ 275 (741)
.......+ . ....++...+..+++. .....
T Consensus 261 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~ 340 (718)
T PLN03073 261 ERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK 340 (718)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC
Confidence 00000000 0 1112233344445553 22456
Q ss_pred hhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 276 IVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 276 ~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
.+..+|||+++++ .|++|+..+|++||||| |++++|+....++.++|..+. .+||++||++
T Consensus 341 ~~~~LSgG~k~rv--~LA~aL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~L~~~~-------~tviivsHd~ 401 (718)
T PLN03073 341 ATKTFSGGWRMRI--ALARALFIEPDLLLLDE----------PTNHLDLHAVLWLETYLLKWP-------KTFIVVSHAR 401 (718)
T ss_pred chhhCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHcC-------CEEEEEECCH
Confidence 7889999999999 99999999999999999 999999999999999998863 3899999999
Q ss_pred CCCCccccC
Q psy11254 356 DTLDPALLR 364 (741)
Q Consensus 356 ~~ld~al~r 364 (741)
++++..+.+
T Consensus 402 ~~l~~~~d~ 410 (718)
T PLN03073 402 EFLNTVVTD 410 (718)
T ss_pred HHHHHhCCE
Confidence 988765544
No 91
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=5e-22 Score=226.80 Aligned_cols=160 Identities=12% Similarity=0.168 Sum_probs=121.7
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..++++++|++..| ++|+||||||||||+|+|+|.+.++.|++.....
T Consensus 10 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK10762 10 IDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN 89 (501)
T ss_pred eEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh
Confidence 344455556899999999999 7899999999999999999999887776643210
Q ss_pred ----cchhhHHHHHh----------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 242 ----VTSKEDMAILM----------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 242 ----~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
.+..+++.... ......++...++.+++.......+.++|||+++++ .|++|+..+|.+|||||
T Consensus 90 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE 167 (501)
T PRK10762 90 LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV--EIAKVLSFESKVIIMDE 167 (501)
T ss_pred ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH--HHHHHHhcCCCEEEEeC
Confidence 00111111100 001123345566777777667788999999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 168 ----------Pt~~LD~~~~~~l~~~l~~l~~----~~~tvii~sHd~~~~~~~~ 208 (501)
T PRK10762 168 ----------PTDALTDTETESLFRVIRELKS----QGRGIVYISHRLKEIFEIC 208 (501)
T ss_pred ----------CcCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998853 3568999999998876433
No 92
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.7e-22 Score=225.75 Aligned_cols=159 Identities=12% Similarity=0.142 Sum_probs=120.4
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..++++++|++++| ++|+||||+|||||+|+|+|.+.+..|++.....
T Consensus 11 ~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK11288 11 GKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHL 90 (501)
T ss_pred EEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhc
Confidence 34455556899999999999 7899999999999999999998877666643210
Q ss_pred ---cchhhHHHHHh---------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 242 ---VTSKEDMAILM---------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 242 ---~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
.+..+++.... ......++..+++.+++.......+..+|||+++++ +|++|+..+|.||++||
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~laral~~~p~lllLDE-- 166 (501)
T PRK11288 91 VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV--EIAKALARNARVIAFDE-- 166 (501)
T ss_pred cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHH--HHHHHHHhCCCEEEEcC--
Confidence 01111221100 011123445566777776656778899999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 167 --------Pt~~LD~~~~~~l~~~l~~~~~----~g~tiiiitHd~~~~~~~~ 207 (501)
T PRK11288 167 --------PTSSLSAREIEQLFRVIRELRA----EGRVILYVSHRMEEIFALC 207 (501)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998753 3678999999998775433
No 93
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=6.6e-22 Score=226.06 Aligned_cols=159 Identities=12% Similarity=0.119 Sum_probs=121.6
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.+..++++++|.+.+| ++|+||||||||||+++|+|.+.+..|++......
T Consensus 18 ~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 18 SKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred EEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 44455566899999999999 78999999999999999999998887776532110
Q ss_pred ----chhhHHHHHh--hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 ----TSKEDMAILM--GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ----~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++..+++.+++.......+..+|||+++++ .|++|+..+|.||++||
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~aL~~~p~lllLDE--------- 166 (510)
T PRK15439 98 FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIV--EILRGLMRDSRILILDE--------- 166 (510)
T ss_pred CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC---------
Confidence 0001111100 011123455566777777666788899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+.++.+++.++.. .+.+||++||+++.+...+
T Consensus 167 -Pt~~LD~~~~~~l~~~l~~~~~----~g~tiiivtHd~~~~~~~~ 207 (510)
T PRK15439 167 -PTASLTPAETERLFSRIRELLA----QGVGIVFISHKLPEIRQLA 207 (510)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998853 3568999999998775433
No 94
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=1.3e-21 Score=224.66 Aligned_cols=161 Identities=13% Similarity=0.259 Sum_probs=120.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeeccc----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSL---------------------- 240 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~---------------------- 240 (741)
+.+.+.+..++++++|++..| ++|+||||||||||+|+|+|.+ .+..+++....
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred EEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccc
Confidence 344455567899999999999 7899999999999999999986 56656553210
Q ss_pred ---------------------------c-----------cchhhHHHHHh------hhhhhhcccccccccccCCCccch
Q psy11254 241 ---------------------------F-----------VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAI 276 (741)
Q Consensus 241 ---------------------------~-----------~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~ 276 (741)
+ ....+++.... ......++..+++.+++.......
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 165 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI 165 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 0 00011111110 011223455667777776666778
Q ss_pred hhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 277 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 277 ~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
+..+|||+++++ +|++|+..+|.+||||| |++++|+..+.++.+++.++.. ..+.+||++||+++
T Consensus 166 ~~~LSgGq~qrv--~iA~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~l~~---~~g~tviivtHd~~ 230 (520)
T TIGR03269 166 ARDLSGGEKQRV--VLARQLAKEPFLFLADE----------PTGTLDPQTAKLVHNALEEAVK---ASGISMVLTSHWPE 230 (520)
T ss_pred cccCCHHHHHHH--HHHHHHhcCCCEEEeeC----------CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEeCCHH
Confidence 899999999999 99999999999999999 9999999999999999988743 23578999999998
Q ss_pred CCCccc
Q psy11254 357 TLDPAL 362 (741)
Q Consensus 357 ~ld~al 362 (741)
.+...+
T Consensus 231 ~~~~~~ 236 (520)
T TIGR03269 231 VIEDLS 236 (520)
T ss_pred HHHHhc
Confidence 876444
No 95
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=6.5e-22 Score=217.63 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=122.3
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC----ceeeecccc--cc-----------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN----FLKVVSSLF--VT----------------------- 243 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~----~~~v~~~~~--~~----------------------- 243 (741)
.++++++|++.+| ++|+|.+||||||++++|.|.+... .+++..... ..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4788999999999 7899999999999999999999876 344422110 00
Q ss_pred -------hhhHHHHH-------hhhhhhhcccccccccccCCCccc--hhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 244 -------SKEDMAIL-------MGNQLKRRSTHHLEKTYFPFYSSA--IVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 244 -------~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
....+... ...+...++..+++.++++..... ++.++|||++|++ ++++|++.+|.+|++||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv--~iAmALa~~P~LLIaDE 180 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV--MIAMALALKPKLLIADE 180 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH--HHHHHHhCCCCEEEECC
Confidence 00011111 122356677888899999877655 8999999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
||+.+|..++..++++|..+.. ..++.+|++|||+..+.....|
T Consensus 181 ----------PTTaLDvt~q~qIL~llk~l~~---e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 181 ----------PTTALDVTTQAQILDLLKDLQR---ELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ----------CccccCHHHHHHHHHHHHHHHH---HcCcEEEEEcCCHHHHHHhcCe
Confidence 9999999999999999999875 5789999999999877654443
No 96
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=1.5e-21 Score=224.74 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=118.8
Q ss_pred HHhhccCCCh-HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------cchh---------
Q psy11254 185 EVIELPLLNP-ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------VTSK--------- 245 (741)
Q Consensus 185 e~i~~~~~~~-~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------~~~~--------- 245 (741)
+.+...|+.. ..+.+++ .+.+| ++|+||||+|||||+|+|+|.+.++.|++..... +.+.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3455556543 4778888 78888 7799999999999999999999999888751000 0000
Q ss_pred -----------h-----------HHHH-HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 246 -----------E-----------DMAI-LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 246 -----------~-----------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
. .+.. +.......++..+++.+++.......+..+|||+.+++ ++++|+..+|++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv--~ia~al~~~p~l 233 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV--AIAAALLRDADF 233 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCE
Confidence 0 0000 00011123445566677776667888999999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~a 361 (741)
||||| |++++|+..+.++.+++..+.. +.+||++||+++.++..
T Consensus 234 llLDE----------Pts~LD~~~~~~l~~~i~~l~~-----g~tvIivsHd~~~l~~~ 277 (590)
T PRK13409 234 YFFDE----------PTSYLDIRQRLNVARLIRELAE-----GKYVLVVEHDLAVLDYL 277 (590)
T ss_pred EEEEC----------CCCCCCHHHHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHh
Confidence 99999 9999999999999999988742 56899999999988643
No 97
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=222.92 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=120.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC--Cceeeecccc---------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLF--------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~--------------------- 241 (741)
+.+.+.+..++++++|++..| ++|+||||||||||+|+|+|.+.+ ..|.+.....
T Consensus 11 l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 90 (506)
T PRK13549 11 ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQE 90 (506)
T ss_pred eEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEec
Confidence 344455556899999999999 789999999999999999999875 5666532110
Q ss_pred ------cchhhHHHHHh-----h----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 242 ------VTSKEDMAILM-----G----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 242 ------~~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
.+..+++.... + .....++..+++.+++.......+..+|||+++++ .|++|+..+|.|||+|
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv--~la~al~~~p~lllLD 168 (506)
T PRK13549 91 LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV--EIAKALNKQARLLILD 168 (506)
T ss_pred cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH--HHHHHHhcCCCEEEEe
Confidence 01111111110 0 01123455667777776666788899999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
| |++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 169 E----------Pt~~LD~~~~~~l~~~l~~l~~----~~~tvi~~tH~~~~~~~~~ 210 (506)
T PRK13549 169 E----------PTASLTESETAVLLDIIRDLKA----HGIACIYISHKLNEVKAIS 210 (506)
T ss_pred C----------CCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCcHHHHHHhc
Confidence 9 9999999999999999998853 3568999999998776433
No 98
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=3.9e-21 Score=219.62 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=118.0
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC--Cceeeecccc---------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLF--------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~--------------------- 241 (741)
+.+.+.+..++++++|++++| ++|+||||||||||+++|+|.+.+ ..|++.....
T Consensus 7 l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 86 (500)
T TIGR02633 7 IVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQE 86 (500)
T ss_pred EEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeec
Confidence 334455556899999999999 789999999999999999998875 4565542110
Q ss_pred ------cchhhHHHHHhh----------hhhhhcccccccccccCCCc-cchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ------VTSKEDMAILMG----------NQLKRRSTHHLEKTYFPFYS-SAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ------~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~-~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++..... .....++..+++.+++.... ...+..+|||+++++ .|++|+..+|.||+
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~iA~al~~~p~lll 164 (500)
T TIGR02633 87 LTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV--EIAKALNKQARLLI 164 (500)
T ss_pred cccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH--HHHHHHhhCCCEEE
Confidence 011111111100 01122344566666765443 456899999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 165 LDE----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tviiitHd~~~~~~~~ 208 (500)
T TIGR02633 165 LDE----------PSSSLTEKETEILLDIIRDLKA----HGVACVYISHKLNEVKAVC 208 (500)
T ss_pred EeC----------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHHHhC
Confidence 999 9999999999999999998853 3668999999998876433
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=5e-21 Score=178.11 Aligned_cols=130 Identities=45% Similarity=0.740 Sum_probs=115.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCCCc
Q psy11254 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ-PCIIFMDEIDAIGGRRFSEGTS 605 (741)
Q Consensus 527 ~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~-p~Vl~iDE~d~~~~~r~~~~~~ 605 (741)
++|+||||||||++++.+|..++.+++.++++++.+.+.+++.+.++.+|+.+.... ||||||||+|.+.+... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999987761 22
Q ss_pred ccHHHHHHHHHHHHHccCCCCC-CCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 606 ADREIQRTLMELLNQMDGFDSL-GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 606 ~~~~~~~~l~~lL~~~~g~~~~-~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
........+.+++..++..... .+++||+|||+++.+|+++.| |||++.|+||+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3345567888888998887665 569999999999999999998 99999999985
No 100
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=6.9e-22 Score=190.49 Aligned_cols=167 Identities=18% Similarity=0.277 Sum_probs=137.1
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c---------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V--------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~--------------------- 242 (741)
+...|+..++++++++++.+| +.++||+|||||||+|||.+.-.++.+.+..... .
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 456688889999999999999 7899999999999999999998888887765431 1
Q ss_pred -----chhhHHHH-------HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 -----TSKEDMAI-------LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 -----~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
+..+++.. ....+.+.++..+|+.+|+....+..+.++|||++||+ ++++|++.+|.|+++||
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRV--AIARALaM~P~vmLFDE--- 162 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRV--AIARALAMDPKVMLFDE--- 162 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHH--HHHHHHcCCCCEEeecC---
Confidence 11112211 11235567788899999999999999999999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLD 369 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d 369 (741)
||+.+||+....+++.+..+.. .+.++|++||.+.+......|.--+|
T Consensus 163 -------PTSALDPElv~EVL~vm~~LA~----eGmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 163 -------PTSALDPELVGEVLDVMKDLAE----EGMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH----cCCeEEEEechhHHHHHhhheEEEee
Confidence 9999999999999999998875 67899999999988765555433344
No 101
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.6e-21 Score=224.49 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=116.4
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------- 241 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------- 241 (741)
.++++++|++.+| ++|+||||||||||+|+|+|.+.+..+.+.....
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 5889999999999 7899999999999999999999877665532110
Q ss_pred -----------cchhhHHHHHh-------hhhhhhcccccccccccCC---CccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 242 -----------VTSKEDMAILM-------GNQLKRRSTHHLEKTYFPF---YSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 242 -----------~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
.+..+++.+.. ......++..+++.+++.. .....+.++|||++|++ +|++|+..+|
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv--~iA~AL~~~P 187 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV--MIAMALSCRP 187 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHH--HHHHHHhCCC
Confidence 00011121110 0112234556677777753 34677899999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.|||+|| |++++|+..+..+.+++..+.. ..+.+||++||+++.+...+
T Consensus 188 ~lLllDE----------Pt~~LD~~~~~~l~~ll~~l~~---~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 188 AVLIADE----------PTTALDVTIQAQILQLIKVLQK---EMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred CEEEEeC----------CCCccCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHHhC
Confidence 9999999 9999999999999999998853 23678999999998775433
No 102
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.2e-21 Score=194.76 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=126.6
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------cc
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------VT 243 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------~~ 243 (741)
+.+.|....+++++++++.+| +.|+||+|||||||+|+|||...+..++|....- .+
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 345566678999999999999 8899999999999999999999999888654311 01
Q ss_pred hhhHHHHH------hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAIL------MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++... ...+...++..+++.+|+....+..+.++|||++|++ +|++|+..+|.||++||
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV--aiARAL~~~P~lLLlDE---------- 156 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV--AIARALATRPKLLLLDE---------- 156 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH--HHHHHHhcCCCEEEEcC----------
Confidence 11122211 1223345788899999999999999999999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|.+++|.-++..+.+.+..+-. ..+.+|+++|||.++
T Consensus 157 PFgALDalTR~~lq~~l~~lw~---~~~~TvllVTHdi~E 193 (248)
T COG1116 157 PFGALDALTREELQDELLRLWE---ETRKTVLLVTHDVDE 193 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHH---hhCCEEEEEeCCHHH
Confidence 9999999999999888876654 467899999998774
No 103
>KOG0743|consensus
Probab=99.84 E-value=3.1e-21 Score=204.87 Aligned_cols=160 Identities=30% Similarity=0.429 Sum_probs=132.2
Q ss_pred cCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588 (741)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~ 588 (741)
-...++.+++.|....+|.|||||||||||+++.|+|+.++.+.+.+..++.... ++ ++.++-.+... +||+
T Consensus 220 F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n----~d--Lr~LL~~t~~k--SIiv 291 (457)
T KOG0743|consen 220 FIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD----SD--LRHLLLATPNK--SILL 291 (457)
T ss_pred HHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc----HH--HHHHHHhCCCC--cEEE
Confidence 3456778899999999999999999999999999999999999998887766443 22 77888776655 7999
Q ss_pred EcccccccCCCCCCCC---ccc-HHHHHHHHHHHHHccCCCCCC--CeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 589 MDEIDAIGGRRFSEGT---SAD-REIQRTLMELLNQMDGFDSLG--QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 589 iDE~d~~~~~r~~~~~---~~~-~~~~~~l~~lL~~~~g~~~~~--~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
|++||+-+.-|..... ... ....-+++.||+.+||+.+.. ..+||+|||+++.|||||+||||+|.+|+++.=+
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCt 371 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCT 371 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCC
Confidence 9999987653322211 111 123357899999999997765 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy11254 663 EQARLEILKIHAGP 676 (741)
Q Consensus 663 ~~~r~~i~~~~~~~ 676 (741)
.++-..+++.+++-
T Consensus 372 f~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 372 FEAFKTLASNYLGI 385 (457)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999985
No 104
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=1.6e-20 Score=215.91 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=114.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc----------------------cc-
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF----------------------VT- 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~----------------------~~- 243 (741)
..++++++|++..| ++|+||||||||||+|+|+|.+.+ ..+++..... ..
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 35899999999999 789999999999999999999875 3455432100 00
Q ss_pred ---------hhhHHHHHh-------hhhhhhcccccccccccCC---CccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 244 ---------SKEDMAILM-------GNQLKRRSTHHLEKTYFPF---YSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 244 ---------~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
....+.... ......++..+++.+++.. .....+.++|||++|++ +|++|+..+|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv--~iAraL~~~p~lll 179 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV--MIAMALLTRPELLI 179 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH--HHHHHHhcCCCEEE
Confidence 000011000 0112234555666677754 23667899999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 180 lDE----------Pt~~LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~~~~~~ 224 (529)
T PRK15134 180 ADE----------PTTALDVSVQAQILQLLRELQQ---ELNMGLLFITHNLSIVRKLA 224 (529)
T ss_pred EcC----------CCCccCHHHHHHHHHHHHHHHH---hcCCeEEEEcCcHHHHHHhc
Confidence 999 9999999999999999998753 23568999999998775433
No 105
>KOG0066|consensus
Probab=99.84 E-value=3.4e-21 Score=200.41 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=117.1
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--CCceeeecccc---cc---------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--ANFLKVVSSLF---VT--------------- 243 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~~~~~v~~~~~---~~--------------- 243 (741)
++..+-....+|-+.++.+-.| +.|+||||-|||||++.||...- |+-+.+..+.- ..
T Consensus 269 nF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kR 348 (807)
T KOG0066|consen 269 NFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKR 348 (807)
T ss_pred eeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHH
Confidence 3344445667888888887777 88999999999999999997531 22222221100 00
Q ss_pred ----------------hhh-----------HHHHHhhhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHH
Q psy11254 244 ----------------SKE-----------DMAILMGNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYA 295 (741)
Q Consensus 244 ----------------~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A 295 (741)
+.. .+..+.......++...+..+||... ...+..++|||++.+| .+++|
T Consensus 349 l~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRv--SLARA 426 (807)
T KOG0066|consen 349 LALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRV--SLARA 426 (807)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeeh--hHHHH
Confidence 000 00001111233455556666666533 4667889999999988 99999
Q ss_pred HhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccc
Q psy11254 296 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLD 369 (741)
Q Consensus 296 ~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d 369 (741)
+-..|.+|+||| |++|+|-...-||..+|..+.. ++++++|+..++|..|...-++|
T Consensus 427 LflEPTLLMLDE----------PTNHLDLNAVIWLdNYLQgWkK-------TLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 427 LFLEPTLLMLDE----------PTNHLDLNAVIWLDNYLQGWKK-------TLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred HhcCceeeeecC----------CccccccceeeehhhHHhhhhh-------eeEEEecccchHHHHHHHHhhhh
Confidence 999999999999 9999999999999998887765 89999999999999888754444
No 106
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.2e-22 Score=198.61 Aligned_cols=171 Identities=19% Similarity=0.264 Sum_probs=134.6
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------cc----------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------VT---------- 243 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------~~---------- 243 (741)
++.+.|.+.++++++++++++| +.|+||||+|||||+|+|.|.+.|..+++..... ++
T Consensus 9 nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~ 88 (254)
T COG1121 9 NLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88 (254)
T ss_pred eeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCC
Confidence 3456666546999999999999 7799999999999999999999998888763211 00
Q ss_pred ----hhhHHHHHh-----------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 244 ----SKEDMAILM-----------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 244 ----~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
...++-.+. ....+..+..+++.+++....++.++++|||+.||+ .||+|++.+|++|+|||
T Consensus 89 ~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV--~lARAL~~~p~lllLDE- 165 (254)
T COG1121 89 SFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV--LLARALAQNPDLLLLDE- 165 (254)
T ss_pred CCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH--HHHHHhccCCCEEEecC-
Confidence 011111111 011235677889999999999999999999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceee
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKI 372 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i 372 (741)
|+++.|+..+..+.++|.++.. .+.+|+++|||++.+..-+.+.-.+.+.+
T Consensus 166 ---------P~~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 166 ---------PFTGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 9999999999999999999986 38899999999998765444433344333
No 107
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-21 Score=216.74 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=121.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..++++++|++..| ++|+||||||||||+|+|+|.+.+..|++.....
T Consensus 11 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 90 (510)
T PRK09700 11 IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS 90 (510)
T ss_pred eEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc
Confidence 334455556899999999999 7899999999999999999999887776643210
Q ss_pred ----cchhhHHHHHh-------h------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ----VTSKEDMAILM-------G------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ----~~~~~~~~~~~-------~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++.... + .....++..+++.+++.......+.++|||+++++ .|++|+..+|.|||
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv--~ia~al~~~p~lll 168 (510)
T PRK09700 91 VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML--EIAKTLMLDAKVII 168 (510)
T ss_pred ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 00011111100 0 01123345566667777667888999999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 169 LDE----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tiiivsHd~~~~~~~~ 212 (510)
T PRK09700 169 MDE----------PTSSLTNKEVDYLFLIMNQLRK----EGTAIVYISHKLAEIRRIC 212 (510)
T ss_pred EeC----------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhC
Confidence 999 9999999999999999998854 3578999999998776433
No 108
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.82 E-value=2.2e-20 Score=176.11 Aligned_cols=155 Identities=21% Similarity=0.326 Sum_probs=132.7
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
|+-+ ++.+++++|++++| +.|+||+|+|||||+|.|.++..++.+.+.....
T Consensus 11 Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 11 YPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred cCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 4444 77999999999999 7799999999999999999999998887764321
Q ss_pred ----cchhhHHHHH------hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 ----VTSKEDMAIL------MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ----~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++++. ....+.+++...++.+|+......++.++|||.+|++ ++++|..++|.+|+-||
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRv--aIARAiV~~P~vLlADE---- 163 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRV--AIARAIVNQPAVLLADE---- 163 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHH--HHHHHHccCCCeEeecC----
Confidence 1223344432 2346788899999999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
||.++||+....++.++.++.. .+.+|++|||+.+.++.
T Consensus 164 ------PTGNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 164 ------PTGNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLELVNR 202 (223)
T ss_pred ------CCCCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHHHHh
Confidence 9999999999999999999886 57899999999988764
No 109
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.81 E-value=1.2e-20 Score=191.28 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=125.7
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS------------------- 244 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~------------------- 244 (741)
.+++.|..+.++++++|++++| ++|+||||||||||+|+|+|.+.+..|.|........
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 3556677889999999999999 7899999999999999999999998877754321000
Q ss_pred -------hhHHHH--------H--hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 245 -------KEDMAI--------L--MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 245 -------~~~~~~--------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
.+.+.. . ........+..+++.+++.....+.+..+|||++|++ .+++|++.+|.||+|||
T Consensus 87 ~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv--~iArALaQ~~~iLLLDE 164 (258)
T COG1120 87 APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV--LIARALAQETPILLLDE 164 (258)
T ss_pred CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH--HHHHHHhcCCCEEEeCC
Confidence 000000 0 0111223455667888888888899999999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
||+++|...+-.+++++..+.. ..+.++|+++||++..
T Consensus 165 ----------PTs~LDi~~Q~evl~ll~~l~~---~~~~tvv~vlHDlN~A 202 (258)
T COG1120 165 ----------PTSHLDIAHQIEVLELLRDLNR---EKGLTVVMVLHDLNLA 202 (258)
T ss_pred ----------CccccCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 9999999999999999999875 4678999999988643
No 110
>KOG0744|consensus
Probab=99.80 E-value=4.4e-20 Score=186.39 Aligned_cols=157 Identities=28% Similarity=0.465 Sum_probs=134.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhC---------ccEEEEechhhhccccchHHHHHHHHHHHHHhc-----CCeEEE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSSAIVDKYIGESARLIREMFNYARNH-----QPCIIF 588 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~---------~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~-----~p~Vl~ 588 (741)
..+-+|++||||||||+|+|++|+.+. ..++.+++..+.+||++||++.+..+|+..... .-..++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345689999999999999999999883 458899999999999999999999999987653 223567
Q ss_pred EcccccccCCCCCCC-CcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHH
Q psy11254 589 MDEIDAIGGRRFSEG-TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARL 667 (741)
Q Consensus 589 iDE~d~~~~~r~~~~-~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~ 667 (741)
|||+++++..|.+.. .+...+..|+++.+|+++|.+...++|++++|+|-.+.||-||.- |-|-+.++++|+..+++
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIY 333 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHH
Confidence 999999998884332 223346789999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhcCccccC
Q psy11254 668 EILKIHAGPIAKHG 681 (741)
Q Consensus 668 ~i~~~~~~~~~~~~ 681 (741)
+|++.++..+...+
T Consensus 334 ~IlkscieEL~~~g 347 (423)
T KOG0744|consen 334 EILKSCIEELISSG 347 (423)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999987665443
No 111
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=5.5e-20 Score=180.13 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=131.2
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+...++++.+++++++++++| +.++||+|||||||+|+|.|.+.|+.+++.....
T Consensus 14 v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~ 93 (263)
T COG1127 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93 (263)
T ss_pred eeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeec
Confidence 346688999999999999999 6699999999999999999999998887754211
Q ss_pred ------cchhhHHHHH-------hhhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 242 ------VTSKEDMAIL-------MGNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 242 ------~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
++..+++++. +...+++.+..-++.+|+... ...+++++|||+.+|+ ++++|++.+|.+||+||
T Consensus 94 gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv--aLARAialdPell~~DE 171 (263)
T COG1127 94 GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV--ALARAIALDPELLFLDE 171 (263)
T ss_pred cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH--HHHHHHhcCCCEEEecC
Confidence 1112233321 122334445556777888776 7788999999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++||-....+.+++..+.. .-+.++|++|||.+.+...+.|
T Consensus 172 ----------PtsGLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl~s~~~i~Dr 215 (263)
T COG1127 172 ----------PTSGLDPISAGVIDELIRELND---ALGLTVIMVTHDLDSLLTIADR 215 (263)
T ss_pred ----------CCCCCCcchHHHHHHHHHHHHH---hhCCEEEEEECChHHHHhhhce
Confidence 9999999999999999999876 3578999999999987655554
No 112
>KOG0742|consensus
Probab=99.80 E-value=2.6e-19 Score=185.30 Aligned_cols=203 Identities=27% Similarity=0.419 Sum_probs=149.0
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC-CeEEEEcccccccCCC
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ-PCIIFMDEIDAIGGRR 599 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~-p~Vl~iDE~d~~~~~r 599 (741)
-.+.++++||||||||||++|+-||...+.++-...++++ .+.-.+...+++++|++|.... .-+|||||+|+|+..|
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV-APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV-APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc-cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 3567889999999999999999999999999888888776 4444466788999999997765 4588999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccc
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAK 679 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~ 679 (741)
+...-+. ..+..+|.||-.- | +...+++++++||+|..+|.|+-- |||.+|+||+|..++|..|+++|+...-.
T Consensus 460 nktymSE--aqRsaLNAlLfRT-G-dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 460 NKTYMSE--AQRSALNALLFRT-G-DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred chhhhcH--HHHHHHHHHHHHh-c-ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 7765543 3456788877543 2 455679999999999999999987 99999999999999999999999875432
Q ss_pred cCCCCc--ccccccc-----cccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHH
Q psy11254 680 HGEIGD--AATKWVL-----PFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVFMM 734 (741)
Q Consensus 680 ~~~~~~--~a~~~l~-----~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~~~ 734 (741)
.++.+. ..+..+. .....+|.+.. .+.+.+.-.. ..|..+|-.+.+||-..
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~---~~~EaAkkTe-GfSGREiakLva~vQAa 591 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGR---KCSEAAKKTE-GFSGREIAKLVASVQAA 591 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHH---HHHHHHHhcc-CCcHHHHHHHHHHHHHH
Confidence 222221 1112221 12334444333 3444443332 56777888777776443
No 113
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=1.4e-19 Score=177.98 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=129.7
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
+++..|.++.++++++++++.| ++|+||+||||||++|+|.+.+.++.+++.....
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig 85 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG 85 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc
Confidence 4566678899999999999999 7799999999999999999999999888754311
Q ss_pred ----cchhhHHHHHh------hhhhhhcccccccccccCC--CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 242 ----VTSKEDMAILM------GNQLKRRSTHHLEKTYFPF--YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 242 ----~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
.+..++++..+ ..+.+.|+..+++.++++. ...+++.++|||++|+| -+++|++.+|.||++||
T Consensus 86 LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV--Gv~RALAadP~ilLMDE-- 161 (309)
T COG1125 86 LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV--GVARALAADPPILLMDE-- 161 (309)
T ss_pred cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH--HHHHHHhcCCCeEeecC--
Confidence 12223444332 2345677888888888864 57889999999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|.+.+||-++..+.+.+..+.. .-+.++|++|||.++
T Consensus 162 --------PFgALDpI~R~~lQ~e~~~lq~---~l~kTivfVTHDidE 198 (309)
T COG1125 162 --------PFGALDPITRKQLQEEIKELQK---ELGKTIVFVTHDIDE 198 (309)
T ss_pred --------CccccChhhHHHHHHHHHHHHH---HhCCEEEEEecCHHH
Confidence 9999999999999998888875 456799999998764
No 114
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2e-19 Score=181.83 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=130.7
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
++.+.+.....+.+++++++.| +.|.||||||||||+|+|||...++.+++....-
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 3445566777788999999999 7799999999999999999999999888764321
Q ss_pred -----cchhhHHHHHh--------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 242 -----VTSKEDMAILM--------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 242 -----~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
.+..+++++.. ....+.++.++++.+.+....+..+.++|||++|++ ++++|++..|.||+|||
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRV--ALARALA~eP~vLLLDE- 163 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRV--ALARALAVEPKVLLLDE- 163 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHH--HHHHHhhcCCCeEeecC-
Confidence 22233454433 224566777888888888888999999999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|.+.+|...+..|..+|..+.. +.+++++++|||.++.-.
T Consensus 164 ---------Pf~ALDa~vr~~lr~wLr~~~~---~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 164 ---------PFGALDAKVRKELRRWLRKLHD---RLGVTTVFVTHDQEEALE 203 (345)
T ss_pred ---------CchhhhHHHHHHHHHHHHHHHH---hhCceEEEEeCCHHHHHh
Confidence 9999999999988888887654 467899999999986543
No 115
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=1e-19 Score=192.49 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=133.2
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc------------------------c
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS------------------------L 240 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~------------------------~ 240 (741)
+...|+....++++++++.+| +.|.||+||||||++|+|||...|+.+++... .
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFP 90 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFP 90 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCC
Confidence 455677788999999999999 77999999999999999999999988877542 2
Q ss_pred ccchhhHHHHHhh-------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 241 FVTSKEDMAILMG-------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 241 ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+.+..+++++-.. .+..+++..+++.+++.....+.+.++|||++|++ ++++|+..+|.||+|||
T Consensus 91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV--ALARAL~~~P~vLLLDE------ 162 (352)
T COG3842 91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV--ALARALVPEPKVLLLDE------ 162 (352)
T ss_pred CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH--HHHHHhhcCcchhhhcC------
Confidence 2344556666443 34567888999999999999999999999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|-+.+|...+..+..-+..+.. .-++++|++|||.++-
T Consensus 163 ----PlSaLD~kLR~~mr~Elk~lq~---~~giT~i~VTHDqeEA 200 (352)
T COG3842 163 ----PLSALDAKLREQMRKELKELQR---ELGITFVYVTHDQEEA 200 (352)
T ss_pred ----cccchhHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHH
Confidence 9999999999988888887765 4589999999998753
No 116
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=3e-19 Score=177.59 Aligned_cols=160 Identities=23% Similarity=0.287 Sum_probs=125.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------ 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------ 241 (741)
..+++++++.+++| +.++||+|||||||+++|++...|+.+.+.....
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 35789999999999 8899999999999999999999998887654321
Q ss_pred cchhhHHHH---Hhhh---hhhhcccccccccccCCCcc-chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 VTSKEDMAI---LMGN---QLKRRSTHHLEKTYFPFYSS-AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 ~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
++..+++.. +.+. ...++...+++.+++..... ..+.++|||++||| ++++|+.++|.+||.||
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV--AIARAL~~~P~iilADE------- 168 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV--AIARALINNPKIILADE------- 168 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH--HHHHHHhcCCCeEEeeC-------
Confidence 111122221 1111 23445566677778876555 78999999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
||.++|.+..+.+++++.++.. ..+.++|++|||++... +.|+.|.+.
T Consensus 169 ---PTgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTHd~~lA~-------~~dr~i~l~ 216 (226)
T COG1136 169 ---PTGNLDSKTAKEVLELLRELNK---ERGKTIIMVTHDPELAK-------YADRVIELK 216 (226)
T ss_pred ---ccccCChHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHH-------hCCEEEEEe
Confidence 9999999999999999999865 35779999999987654 556666654
No 117
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=3e-19 Score=188.66 Aligned_cols=164 Identities=22% Similarity=0.278 Sum_probs=132.1
Q ss_pred HhhccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--------------------
Q psy11254 186 VIELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------- 242 (741)
Q Consensus 186 ~i~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------- 242 (741)
.+...++ ...++++++|++++| ++|+||||+|||||+|+|+|.+.++.|++......
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 3455667 588999999999999 78999999999999999999999988887643211
Q ss_pred -----chhhHHHH---Hhhh---hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 243 -----TSKEDMAI---LMGN---QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 243 -----~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
+..+.+.+ +.+. ....++..+++.+++.......+.+||+|+++++ .|+.|+.++|.++||||
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl--~ia~aL~~~P~lliLDE---- 162 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRL--SIALALLHDPELLILDE---- 162 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHH--HHHHHHhcCCCEEEECC----
Confidence 11112222 1121 2244677888888888766788999999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++..+.. .++.+|+++||.++.+...+.+
T Consensus 163 ------Pt~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 163 ------PTSGLDPESRREIWELLRELAK---EGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred ------CCcCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHHHHhCCE
Confidence 9999999999999999999876 3458999999999988765544
No 118
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.76 E-value=6.7e-19 Score=167.47 Aligned_cols=159 Identities=20% Similarity=0.250 Sum_probs=130.8
Q ss_pred cCCChH-HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 190 PLLNPE-LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 190 ~~~~~~-~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
.|+.+. .+++++|....| +.|.||||+||||++|.||+.+.|+.+.+....+.
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhh
Confidence 344444 788999999999 77999999999999999999999998888654221
Q ss_pred -chhhHHH------HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMA------ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++. .+.+.+.+.++..+.+.+++....+..+..||-|++|+| .+++|+.++|++++|||
T Consensus 90 lT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV--~iARAlvh~P~i~vlDE-------- 159 (245)
T COG4555 90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKV--AIARALVHDPSILVLDE-------- 159 (245)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHH--HHHHHHhcCCCeEEEcC--------
Confidence 1112222 233456677777777888877777888999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|....+.+.+++.+++. ++..||++||.++++...|.|
T Consensus 160 --P~sGLDi~~~r~~~dfi~q~k~----egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 160 --PTSGLDIRTRRKFHDFIKQLKN----EGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred --CCCCccHHHHHHHHHHHHHhhc----CCcEEEEecccHHHHHHhhhe
Confidence 9999999999999999999875 677999999999988766654
No 119
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.1e-19 Score=175.86 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=127.3
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-cch------------------------hhHH
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-VTS------------------------KEDM 248 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~~~------------------------~~~~ 248 (741)
++++++|++.+| +.|+|++|||||||+|+|+|...+..|.+..... ... ...+
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv 101 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhH
Confidence 899999999999 7799999999999999999999999888875431 000 0111
Q ss_pred HHHhh--------hhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 249 AILMG--------NQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 249 ~~~~~--------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
..+.. +...+++.++++.++++.. ..+.+.++|||+.||+ +|++|+..+|.+|++|| |+
T Consensus 102 ~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi--aIARAL~~~PklLIlDE----------pt 169 (252)
T COG1124 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI--AIARALIPEPKLLILDE----------PT 169 (252)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH--HHHHHhccCCCEEEecC----------ch
Confidence 11111 1223446778888888754 5678889999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLD 369 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d 369 (741)
+.+|...+..++++|..+.. ..+.++|++|||...+.-.|.|..-++
T Consensus 170 SaLD~siQa~IlnlL~~l~~---~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 170 SALDVSVQAQILNLLLELKK---ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHH---hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 99999999999999999876 467899999999998877666654444
No 120
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.75 E-value=7.3e-19 Score=187.41 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=127.2
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
...+.+..++++++|++++| ++|+||||+|||||+|+|+|.+.++.|++.....
T Consensus 14 ~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 93 (306)
T PRK13537 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDP 93 (306)
T ss_pred EEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCC
Confidence 34455567899999999999 7899999999999999999999888776643211
Q ss_pred -cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++.+.. + .....++..+++.+++.......+..+|||+++++ .|++|+.++|.+|||||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~aL~~~P~lllLDE------- 164 (306)
T PRK13537 94 DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL--TLARALVNDPDVLVLDE------- 164 (306)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH--HHHHHHhCCCCEEEEeC-------
Confidence 11112222211 1 11233455666777777667788899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCcc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRL 368 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~ 368 (741)
|++++|+..++.+.+++.++.. .+.+||++||+++++...+.|...+
T Consensus 165 ---Pt~gLD~~~~~~l~~~l~~l~~----~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 165 ---PTTGLDPQARHLMWERLRSLLA----RGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred ---CCcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9999999999999999998853 3679999999999887655554333
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.75 E-value=8.9e-18 Score=156.18 Aligned_cols=130 Identities=45% Similarity=0.740 Sum_probs=104.7
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHH
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~ 287 (741)
++|+||||||||++++.+|..++.++..+.+ ..+.+.+.+...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~-----------------------------------~~~~~~~~~~~~~~ 45 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG-----------------------------------SELISSYAGDSEQK 45 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET-----------------------------------THHHTSSTTHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc-----------------------------------cccccccccccccc
Confidence 5899999999999999999999988888875 34445678889999
Q ss_pred HHHHHHHHHhcC-CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCC-CCeEEEEeeCCCCCCCccccCC
Q psy11254 288 IREMFNYARNHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL-GQVKMIMATNRPDTLDPALLRP 365 (741)
Q Consensus 288 v~~~~~~A~~~~-P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~-~~v~vI~at~~~~~ld~al~r~ 365 (741)
++..|..|.... |+||+|||+|.+..... ...+......+..++..++..... .++.+|++||+++.+++.+.|
T Consensus 46 i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~- 121 (132)
T PF00004_consen 46 IRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR- 121 (132)
T ss_dssp HHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-
T ss_pred cccccccccccccceeeeeccchhcccccc---cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-
Confidence 999999998887 99999999999998871 123344445555566666654333 569999999999999999998
Q ss_pred CccceeeecCC
Q psy11254 366 GRLDRKIEIPL 376 (741)
Q Consensus 366 gr~d~~i~~~~ 376 (741)
+||+..+++|.
T Consensus 122 ~rf~~~i~~~~ 132 (132)
T PF00004_consen 122 SRFDRRIEFPL 132 (132)
T ss_dssp TTSEEEEEE-S
T ss_pred CCCcEEEEcCC
Confidence 99999998863
No 122
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.75 E-value=2.2e-18 Score=179.18 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=117.3
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeee--cccccc--------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVV--SSLFVT-------------------- 243 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~--~~~~~~-------------------- 243 (741)
..++.++++|++..| +.|+|.+|+|||..+.+|.+.+..+ .+++. +..++.
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 567888999999999 8899999999999999999988542 11221 111100
Q ss_pred ----------hhhHHHHH-------hhhhhhhcccccccccccCCC---ccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 244 ----------SKEDMAIL-------MGNQLKRRSTHHLEKTYFPFY---SSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 244 ----------~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
....+.+. .+...+.++..+++.+|++.. ...++.++|||++|++ +++.|++++|++|
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV--MIAMALan~P~lL 179 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV--MIAMALANEPDLL 179 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH--HHHHHHcCCCCeE
Confidence 00111111 123456677788888888753 4667889999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+-|| ||+.+|...+..++++|..+.. .-+..++++|||...+-
T Consensus 180 IADE----------PTTALDVtvQaQIL~Ll~~Lq~---~~gMa~lfITHDL~iVr 222 (534)
T COG4172 180 IADE----------PTTALDVTVQAQILDLLKELQA---ELGMAILFITHDLGIVR 222 (534)
T ss_pred eecC----------CcchhhhhhHHHHHHHHHHHHH---HhCcEEEEEeccHHHHH
Confidence 9999 9999999999999999999886 56789999999987653
No 123
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.4e-17 Score=175.26 Aligned_cols=211 Identities=23% Similarity=0.313 Sum_probs=139.9
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCC-C--ceEEcCCCChHHHHHHHHHHhcCC-------Cceeeecc
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK-G--CLLYGPPGTGKTLLARAVASQLDA-------NFLKVVSS 239 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~-G--vlL~Gp~GtGKTtL~r~ia~~l~~-------~~~~v~~~ 239 (741)
+.+++|++++|++|++.+.+. ..+.++...|+..+. | ++|+|||||||||+|+++|..+.. .+..++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-- 98 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-- 98 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--
Confidence 347999999999999998873 345677778887664 5 789999999999999999987632 122222
Q ss_pred cccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 240 LFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
.+++++.|.|+...+++..|..| .++||||||+|.++..+. .
T Consensus 99 ---------------------------------~~~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~ 140 (287)
T CHL00181 99 ---------------------------------RDDLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--E 140 (287)
T ss_pred ---------------------------------HHHHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--c
Confidence 14566778888877777778776 357999999999975432 2
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC--C---CCCccccCCCccceeeecCCCCHHHHHhccccchhccC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP--D---TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~--~---~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
++...+.+..|..++ +. ...++.||++++.. + .++|++.+ ||+..+.|++++..+..+|+..+.....
T Consensus 141 ~~~~~e~~~~L~~~m---e~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 141 RDYGSEAIEILLQVM---EN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred cchHHHHHHHHHHHH---hc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 233445555555544 32 13567788887632 1 34688888 9999999999999999887333222111
Q ss_pred CCcccCCCCHHHHHH----h--cCCCC-HHHHHHHHHHHHHHH
Q psy11254 395 PIAKHGEIDYEAVVK----L--SDSFN-GADLRNVCTEAGLFA 430 (741)
Q Consensus 395 ~~~~~~~~~~~~la~----~--t~g~~-gadi~~l~~~A~~~a 430 (741)
+....+. ...+.. . ...|. ++++++++..+..+.
T Consensus 214 -~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 214 -YQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred -CCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 1111111 112222 1 23454 788888888776544
No 124
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.3e-19 Score=178.22 Aligned_cols=160 Identities=20% Similarity=0.232 Sum_probs=133.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--------------------------c---
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------------V--- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------------~--- 242 (741)
..+++++++.+++| ++++|.+|+|||||+|+|.+.-.|+.+++..... +
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 46889999999999 7799999999999999999999998888764321 0
Q ss_pred chhhHHHHH------hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAIL------MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+...++++. +..+...|+.++++.+|+.......+.++|||++|+| .+++|++.+|.||+.||
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV--aIARALa~~P~iLL~DE--------- 167 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV--AIARALANNPKILLCDE--------- 167 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH--HHHHHHhcCCCEEEecC---------
Confidence 111233321 2345678899999999999999999999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCcc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRL 368 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~ 368 (741)
+|+.+||++...++++|..++. .-+++|+++||.++.+...|.|..-+
T Consensus 168 -aTSALDP~TT~sIL~LL~~In~---~lglTIvlITHEm~Vvk~ic~rVavm 215 (339)
T COG1135 168 -ATSALDPETTQSILELLKDINR---ELGLTIVLITHEMEVVKRICDRVAVL 215 (339)
T ss_pred -ccccCChHHHHHHHHHHHHHHH---HcCCEEEEEechHHHHHHHhhhheEe
Confidence 9999999999999999999886 56899999999999887666554333
No 125
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.74 E-value=1e-18 Score=177.14 Aligned_cols=160 Identities=15% Similarity=0.226 Sum_probs=119.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..+++++++++++| ++|+||||||||||+++|+|.+.++.+++.....
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCC
Confidence 344455556899999999999 7899999999999999999999887776643210
Q ss_pred cchhhHHHHHhh----------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 VTSKEDMAILMG----------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++||
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~llllDE---- 158 (213)
T cd03235 85 ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRV--LLARALVQDPDLLLLDE---- 158 (213)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----
Confidence 011111111100 01122344556666666555677889999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+...+
T Consensus 159 ------Pt~~LD~~~~~~l~~~l~~~~~----~~~tvi~~sH~~~~~~~~~ 199 (213)
T cd03235 159 ------PFAGVDPKTQEDIYELLRELRR----EGMTILVVTHDLGLVLEYF 199 (213)
T ss_pred ------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhc
Confidence 9999999999999999988753 3568999999998776433
No 126
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.3e-18 Score=176.18 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=120.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 6 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 85 (213)
T cd03259 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFP 85 (213)
T ss_pred eEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhcc
Confidence 334444556899999999999 7899999999999999999999887776643210
Q ss_pred -cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++..... .....++...++.+++.......+..+|||+++++ .+++|+..+|.+|++||
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~la~al~~~p~~lllDE------- 156 (213)
T cd03259 86 HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRV--ALARALAREPSLLLLDE------- 156 (213)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC-------
Confidence 011111111100 11123345566677776666778899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 157 ---Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~~~~ 198 (213)
T cd03259 157 ---PLSALDAKLREELREELKELQR---ELGITTIYVTHDQEEALALA 198 (213)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEecCHHHHHHhc
Confidence 9999999999999999988743 23568999999998765433
No 127
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.5e-19 Score=177.75 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=129.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------T 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------~ 243 (741)
..+++++++.+++| ++|+||||||||||+++++|.+.+..+.+...... +
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 47889999999999 88999999999999999999999988777322111 1
Q ss_pred hhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++++.. ..++.+|+..+++.+++.......+..+|||+.|++ +|+.+++.+|.+|+|||
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRv--aIA~vLa~~P~iliLDE---------- 164 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRV--AIAGVLAMGPEILLLDE---------- 164 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeH--HhhHHHHcCCCEEEEcC----------
Confidence 122344332 235678888999999998888999999999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
||+++|+..++.+.+++.++.. .++.++|++||+.+.+.....
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~---~~~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKE---EGGKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh---cCCCeEEEEeCcHHHHHhhCC
Confidence 9999999999999999999875 356799999999998765443
No 128
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.73 E-value=2.5e-18 Score=183.40 Aligned_cols=157 Identities=21% Similarity=0.299 Sum_probs=122.1
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------cch
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------VTS 244 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~~~ 244 (741)
++..++++++|++++| ++|+||||+|||||+|+|+|.+.++.|++..... .+.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 4456889999999999 7799999999999999999999888777653211 011
Q ss_pred hhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++.... + .....++..+++.+++.......+..+|||+++++ .|++|+..+|.+|++|| |
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE----------P 151 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRL--DIAASLIHQPDVLFLDE----------P 151 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------C
Confidence 11222111 0 11223455677777877667788999999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++++|+..+..+.+++..+.. .+.+||++||+++.+...+.+
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKE----EGVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhCCE
Confidence 999999999999999998853 367999999999887654444
No 129
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.1e-18 Score=181.60 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=130.7
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc------------------------cc
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS------------------------LF 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~------------------------~~ 241 (741)
...|++..+++++++++..| +.|+||||||||||+|+|||...++.|++... .+
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPh 89 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCC
Confidence 34454443788999999999 78999999999999999999999988887643 12
Q ss_pred cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++++... .+..+++....+.+++.......+.++|||++|++ ++++|+..+|+++++||
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV--AlaRAlVr~P~v~L~DE-------- 159 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV--ALARALVRKPKVFLLDE-------- 159 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH--HHHHHHhcCCCEEEecC--------
Confidence 334456665433 46678888999999999999999999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|.+++|...+..+...+..+.. .-+.++|.+|||..+..
T Consensus 160 --PlSnLDa~lR~~mr~ei~~lh~---~l~~T~IYVTHDq~EAm 198 (338)
T COG3839 160 --PLSNLDAKLRVLMRSEIKKLHE---RLGTTTIYVTHDQVEAM 198 (338)
T ss_pred --chhHhhHHHHHHHHHHHHHHHH---hcCCcEEEEcCCHHHHH
Confidence 9999999999988888888765 45789999999987543
No 130
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.73 E-value=2.6e-18 Score=173.02 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=118.9
Q ss_pred hccCCC-hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 188 ELPLLN-PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 188 ~~~~~~-~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
.+.+.+ ..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 85 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhh
Confidence 344444 56899999999999 78999999999999999999998877766432110
Q ss_pred --chhhHHHHHhhh--hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 243 --TSKEDMAILMGN--QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 243 --~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
+..+++...... ....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |
T Consensus 86 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE----------P 153 (205)
T cd03226 86 TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRL--AIAAALLSGKDLLIFDE----------P 153 (205)
T ss_pred hccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHH--HHHHHHHhCCCEEEEeC----------C
Confidence 000111110000 0112445566777777666788899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~----~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAA----QGKAVIVITHDYEFLAK 191 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHH
Confidence 999999999999999988753 35689999999987653
No 131
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.73 E-value=1.9e-18 Score=175.16 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 7 TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred EEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 34444556899999999999 7899999999999999999999887666543110
Q ss_pred cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.... ......++..+++.+++.......+..+|||+++++ ++++|+..+|++|++||
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~--~laral~~~p~llllDE-------- 156 (213)
T cd03301 87 MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRV--ALGRAIVREPKVFLMDE-------- 156 (213)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 01111222110 111223344556667776556778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..++.+.+++.++.. ..+.+||++||+++.+..
T Consensus 157 --Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 157 --PLSNLDAKLRVQMRAELKRLQQ---RLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235699999999887653
No 132
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.73 E-value=2.2e-18 Score=175.05 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=116.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
+.+++++++++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 35889999999999 78999999999999999999998877766432110
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++..+++.+++.......+..+|||+++++ ++++|+..+|++|++||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~p~llllDE--------- 164 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRV--AIARAIVHKPPLLLADE--------- 164 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 0011111110 011223445566777776666778899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 165 -Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 165 -PTGNLDPELSRDIMRLFEEFNR----RGTTVLVATHDINLVET 203 (216)
T ss_pred -CCCcCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 35689999999987653
No 133
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.73 E-value=1.7e-18 Score=179.93 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=119.8
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----------c----------cchhh
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----------F----------VTSKE 246 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----------~----------~~~~~ 246 (741)
.+.+..++++++|.+.+| ++|+||||||||||+++|+|.+.+..+++.... + .+..+
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHH
Confidence 344556899999999999 789999999999999999999988777664211 0 01111
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
++..........++..+++.+++.......+..+|||+++++ .|++|+..+|++|++|| |++++|+..
T Consensus 101 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl--~laraL~~~p~lllLDE----------Pt~~LD~~~ 168 (257)
T PRK11247 101 NVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRV--ALARALIHRPGLLLLDE----------PLGALDALT 168 (257)
T ss_pred HHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CCCCCCHHH
Confidence 222111111223455666777776666778899999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 169 ~~~l~~~L~~~~~---~~~~tviivsHd~~~~~~~~ 201 (257)
T PRK11247 169 RIEMQDLIESLWQ---QHGFTVLLVTHDVSEAVAMA 201 (257)
T ss_pred HHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHhC
Confidence 9999999988742 23568999999998765433
No 134
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=4.6e-18 Score=171.03 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=119.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
..+..+.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T PRK13538 9 CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88 (204)
T ss_pred EEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcC
Confidence 3344556899999999999 7899999999999999999999888776643211
Q ss_pred cchhhHHHHHhhh---hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 242 VTSKEDMAILMGN---QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+..+++...... ....++..+++.+++.......+..+|||+.+++ .+++|+..+|.++++|| |
T Consensus 89 ~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE----------P 156 (204)
T PRK13538 89 LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRV--ALARLWLTRAPLWILDE----------P 156 (204)
T ss_pred CcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH--HHHHHHhcCCCEEEEeC----------C
Confidence 0111122211110 1223445566667776555677899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++++|+..+..+.+++.++.. .+.++|++||++++++.
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAE----QGGMVILTTHQDLPVAS 194 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHH----CCCEEEEEecChhhhcc
Confidence 999999999999999988753 24589999999999873
No 135
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.73 E-value=2.3e-18 Score=185.63 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=125.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+...+....++++++|++++| ++|+||||+|||||+++|+|.+.++.|++.....
T Consensus 47 l~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 126 (340)
T PRK13536 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD 126 (340)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCC
Confidence 344455667899999999999 7899999999999999999999888776653211
Q ss_pred --cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 242 --VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 242 --~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.+..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+.++|.+|||||
T Consensus 127 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv--~lA~aL~~~P~lLiLDE------ 198 (340)
T PRK13536 127 LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL--TLARALINDPQLLILDE------ 198 (340)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH--HHHHHHhcCCCEEEEEC------
Confidence 111122222111 11123344566777777777888999999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+.+
T Consensus 199 ----Pt~gLD~~~r~~l~~~l~~l~~----~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 199 ----PTTGLDPHARHLIWERLRSLLA----RGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhCCE
Confidence 9999999999999999998853 367999999999988765554
No 136
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.73 E-value=3.1e-18 Score=174.15 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=115.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++......
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 56899999999999 78999999999999999999998877766432110
Q ss_pred -chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... + .....++..+++.+++.......+..+|||+++++ ++++|+..+|+||++||
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~lllLDE-------- 166 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV--AIARALANDPKIILADE-------- 166 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHH--HHHHHHccCCCEEEEcC--------
Confidence 0011111110 0 01122345566667776656777899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+.
T Consensus 167 --P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 167 --PTGNLDSETGKEVMELLRELNK---EAGTTIVVVTHDPELAE 205 (218)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHHh
Confidence 9999999999999999998753 23679999999988764
No 137
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.1e-18 Score=175.60 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=116.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----------c----------cchhhHHHH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----------F----------VTSKEDMAI 250 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----------~----------~~~~~~~~~ 250 (741)
..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++.... + .+..+++..
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 46899999999999 789999999999999999999888777664311 0 111122221
Q ss_pred Hhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 251 LMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 251 ~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
... .....++...++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~la~al~~~p~lllLDE----------Pt~~LD~ 164 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV--ALARALAVDPDVLLLDE----------PFSALDA 164 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEECC----------CCCCCCH
Confidence 111 11223455566777776666777899999999999 99999999999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 165 ~~~~~~~~~l~~~~~---~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 165 LTREQLQEELLDIWR---ETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred HHHHHHHHHHHHHHH---HcCCEEEEEecCHHHHHH
Confidence 999999999988742 235689999999986653
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=4e-17 Score=170.48 Aligned_cols=152 Identities=22% Similarity=0.327 Sum_probs=117.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHh-------CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQL-------DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 596 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~-------~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~ 596 (741)
..+++|+||||||||++|+++|+.+ ..+++.++++++.+.|+|+++..++.+|+.|. ++||||||+|.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~ 118 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLA 118 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhc
Confidence 3468999999999999999999875 24688899999999999999999999998875 4699999999986
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 597 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 597 ~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
... ........+..++..|+.. .+++++|++++..+ .++|++.+ ||+..|+||+++.+++.+|++
T Consensus 119 ~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 119 RGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred cCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHH
Confidence 311 1112346677888888753 34566777664433 36789988 999999999999999999999
Q ss_pred HhhcCccccCCCCcccccc
Q psy11254 672 IHAGPIAKHGEIGDAATKW 690 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~ 690 (741)
.++.... ..+++.+...
T Consensus 189 ~~~~~~~--~~l~~~a~~~ 205 (261)
T TIGR02881 189 RMVKERE--YKLTEEAKWK 205 (261)
T ss_pred HHHHHcC--CccCHHHHHH
Confidence 9987532 2355544433
No 139
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.3e-18 Score=175.36 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=121.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 7 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (220)
T cd03265 7 VKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDD 86 (220)
T ss_pred EEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccc
Confidence 34455566899999999999 7899999999999999999998887776643211
Q ss_pred -cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++.... + .....++..+++.+++.......+.++|||+++++ +|++|+..+|.+|++||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~--~la~al~~~p~llllDE------- 157 (220)
T cd03265 87 ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL--EIARSLVHRPEVLFLDE------- 157 (220)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC-------
Confidence 01111121110 0 11223445566777776666778899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+.
T Consensus 158 ---Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 158 ---PTIGLDPQTRAHVWEYIEKLKE---EFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred ---CccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999988753 235689999999987764443
No 140
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.72 E-value=6e-18 Score=169.73 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=120.7
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
+.+.+.+..+++++++++++| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (201)
T cd03231 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85 (201)
T ss_pred EEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccC
Confidence 344455566899999999999 88999999999999999999998877766432110
Q ss_pred ---chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 243 ---TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+..+++..........++..+++.+++.......+..+|||+++++ ++++|+..+|++|++|| |+
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE----------Pt 153 (201)
T cd03231 86 TTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV--ALARLLLSGRPLWILDE----------PT 153 (201)
T ss_pred CCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CC
Confidence 0111111111111123445556666776555677889999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+++|+..++.+.+++.++.. .+.++|++||++..+.....
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~----~g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCA----RGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCchhhhhccc
Confidence 99999999999999987753 35689999999988765443
No 141
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.72 E-value=2.6e-18 Score=173.83 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=116.9
Q ss_pred hccCCC--hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------
Q psy11254 188 ELPLLN--PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--------------------- 242 (741)
Q Consensus 188 ~~~~~~--~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--------------------- 242 (741)
.+.+.+ ..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (211)
T cd03225 6 SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85 (211)
T ss_pred EEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChh
Confidence 334444 56899999999999 78999999999999999999998877766432100
Q ss_pred ------chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 ------TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 ------~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
+..+++..... .....++...++.+++.......+..+|||+++++ .+++|+..+|.+|++||
T Consensus 86 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~p~llllDE--- 160 (211)
T cd03225 86 DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRV--AIAGVLAMDPDILLLDE--- 160 (211)
T ss_pred hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC---
Confidence 00011111000 01112334455666665555677899999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 161 -------Pt~~LD~~~~~~~~~~l~~~~~----~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 161 -------PTAGLDPAGRRELLELLKKLKA----EGKTIIIVTHDLDLLLE 199 (211)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 9999999999999999988764 25789999999887753
No 142
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.72 E-value=3.3e-18 Score=173.43 Aligned_cols=152 Identities=21% Similarity=0.308 Sum_probs=115.7
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------- 242 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------- 242 (741)
+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 456899999999999 78999999999999999999988877766432110
Q ss_pred -chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... ......++...++.+++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~lllLDE-------- 163 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRV--AIARAIVNSPPLLLADE-------- 163 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhCCCCEEEEeC--------
Confidence 0011111100 001123344556666766555677889999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++++..
T Consensus 164 --Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 164 --PTGNLDPDLSERILDLLKRLNK----RGTTVIVATHDLSLVDR 202 (214)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 9999999999999999998753 35689999999987753
No 143
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.2e-18 Score=176.19 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=119.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+....++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 7 TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 33444556899999999999 78999999999999999999998877766432110
Q ss_pred ------chhhHHHHHhh-------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 243 ------TSKEDMAILMG-------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 243 ------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+..+|+||++||
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~ia~al~~~p~llllDE-- 162 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRV--ALARALALDPELLLYDE-- 162 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEecC--
Confidence 01111111100 01122344556667776666778899999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 163 --------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~vsH~~~~~~~~~ 204 (235)
T cd03261 163 --------PTAGLDPIASGVIDDLIRSLKK---ELGLTSIMVTHDLDTAFAIA 204 (235)
T ss_pred --------CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEecCHHHHHHhc
Confidence 9999999999999999988753 23568999999998765433
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=4.6e-17 Score=171.24 Aligned_cols=150 Identities=25% Similarity=0.338 Sum_probs=116.8
Q ss_pred HHhcCCCC---CCceEEEcCCCCChHHHHHHHHHHhC-------ccEEEEechhhhccccchHHHHHHHHHHHHHhcCCe
Q psy11254 516 FQRVGITP---PKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPC 585 (741)
Q Consensus 516 ~~~~~~~~---~~~~ll~G~~G~GKt~l~~~~a~~~~-------~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~ 585 (741)
....|+.+ +.+++|+||||||||++|+++|..+. .+++.++.+++++.|+|+++.+++.+|+.|.. +
T Consensus 48 ~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~g---g 124 (287)
T CHL00181 48 RKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMG---G 124 (287)
T ss_pred HHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccC---C
Confidence 33445433 34589999999999999999998762 35899999999999999999888899988753 6
Q ss_pred EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCC
Q psy11254 586 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 586 Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~ 660 (741)
||||||+|.+...+.. +. ....++..|+..|+. ..++++||++++... .++|++.| ||+.+|+||+
T Consensus 125 VLfIDE~~~l~~~~~~--~~---~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~ 195 (287)
T CHL00181 125 VLFIDEAYYLYKPDNE--RD---YGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPD 195 (287)
T ss_pred EEEEEccchhccCCCc--cc---hHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCC
Confidence 9999999998754321 11 224566677777763 345788888886432 34699998 9999999999
Q ss_pred CCHHHHHHHHHHhhcCc
Q psy11254 661 PNEQARLEILKIHAGPI 677 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~ 677 (741)
|+.+++.+|++.++...
T Consensus 196 ~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 196 YTPEELLQIAKIMLEEQ 212 (287)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 145
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.72 E-value=5.2e-18 Score=174.71 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=120.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..+++++++++.+| ++|+||||||||||+++|+|.+.+..|++.....
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 85 (236)
T cd03219 6 LTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85 (236)
T ss_pred eEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc
Confidence 334444556899999999999 7899999999999999999998877666532110
Q ss_pred ----cchhhHHHHHhh----------------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ----VTSKEDMAILMG----------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ----~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
.+..+++..... .....++..+++.+++.......+.++|||+.+++ ++++|+..+|.
T Consensus 86 l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~ 163 (236)
T cd03219 86 LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL--EIARALATDPK 163 (236)
T ss_pred cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH--HHHHHHhcCCC
Confidence 011111211100 01122345566667776666778899999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|++|| |++++|+..+..+.+++.++.. .+.++|++||+++.+...+.
T Consensus 164 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 164 LLLLDE----------PAAGLNPEETEELAELIRELRE----RGITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred EEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHHHhCC
Confidence 999999 9999999999999999988753 35689999999987754333
No 146
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.72 E-value=7.8e-18 Score=171.81 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=126.6
Q ss_pred HHHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--------------cc
Q psy11254 180 IRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------VT 243 (741)
Q Consensus 180 k~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------~~ 243 (741)
+.-..+++.+.+..+.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++..... .+
T Consensus 21 ~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~t 100 (224)
T cd03220 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCc
Confidence 3355667777888888999999999999 7899999999999999999999888777653211 01
Q ss_pred hhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++..... .....+....++.+++.......+..+|||+++++ .+++|+..+|++|++||
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~p~llllDE---------- 168 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARL--AFAIATALEPDILLIDE---------- 168 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------
Confidence 1122221110 11122344455566666666778899999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..++.+.+++..+.. .+.+||++||+++.+..
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~----~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLK----QGKTVILVSHDPSSIKR 207 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 25689999999887754
No 147
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.3e-18 Score=185.60 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=123.0
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchh
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSK 245 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~ 245 (741)
....++++++|++++| ++|+||||||||||+|+|||...++.|++..... .+..
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 3456888999999999 7799999999999999999999888777653211 1223
Q ss_pred hHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+++.+... .....++..+++.+++.......+.++|||++|++ +|++|+..+|++|++|| |+
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv--alARAL~~~P~llLLDE----------P~ 162 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV--AMGRAIVREPAVFLFDE----------PL 162 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------Cc
Confidence 34443221 12234566778888888778889999999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+++|...+..+.+.+..+.. ..++++|++||+++++..
T Consensus 163 s~LD~~~r~~l~~~l~~l~~---~~g~tii~vTHd~~ea~~ 200 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHR---RLKTTSLYVTHDQVEAMT 200 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 99999999999999988754 346799999999886543
No 148
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.72 E-value=3.7e-18 Score=184.99 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=126.9
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------c
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------F 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------~ 241 (741)
.+.+.+..++++++|+++.| ++|+||||||||||+|+|||...++.+++.... .
T Consensus 11 ~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 11 RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90 (353)
T ss_pred EEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 34455566788999999998 789999999999999999999988877665321 0
Q ss_pred cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|++|+|||
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv--aLARaL~~~P~llLLDE-------- 160 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV--ALARALATSPGLLLLDE-------- 160 (353)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 122334443221 12345677788888888878889999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|...+..+.+.+.++.. ..++++|++||+++++...+
T Consensus 161 --P~s~LD~~~r~~l~~~L~~l~~---~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 161 --PLSALDARVREHLRTEIRQLQR---RLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHHhC
Confidence 9999999999999999988754 34679999999998764433
No 149
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=1.1e-16 Score=167.10 Aligned_cols=177 Identities=22% Similarity=0.303 Sum_probs=119.6
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCC---ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG---CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G---vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
.+++++||+++|++|++.+.++... ......|+.++.+ ++|+|||||||||+|+++|+.+... +.+....
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~----- 76 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGH----- 76 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCc-----
Confidence 3678999999999999998876443 3444456665553 7899999999999999999876321 0000000
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
.+....+++++.|.|+...++++.|..|. ++||||||+|.|..... +..
T Consensus 77 ----------------------~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~------~~~ 125 (261)
T TIGR02881 77 ----------------------LIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE------KDF 125 (261)
T ss_pred ----------------------eEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc------cch
Confidence 00111245667888998898988998774 57999999999964211 111
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccc
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTW 387 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~ 387 (741)
....+..++..++.. ..++.+|++++..+ .++|++.+ ||+..+.|+.++..++..++.
T Consensus 126 ~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 126 GKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred HHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHH
Confidence 233445556666542 34556666654322 25778877 898899999999999988843
No 150
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.72 E-value=3.6e-18 Score=168.26 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=115.3
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------hhHHHHHhhhhhhhcc
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------KEDMAILMGNQLKRRS 260 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~ 260 (741)
.+....+++++++.+.+| ++|.||||+|||||+++|+|.+.+..+++........ ...++++.+
T Consensus 8 ~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------- 80 (180)
T cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------- 80 (180)
T ss_pred EECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-------
Confidence 344456899999999999 7899999999999999999999888887764321110 011222222
Q ss_pred cccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCC
Q psy11254 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 340 (741)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~ 340 (741)
+++.+++.......+..+|||+.+++ ++++|+..+|.++++|| |++++|+.....+.+++.++..
T Consensus 81 --~l~~~gl~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE----------P~~~LD~~~~~~~~~~l~~~~~- 145 (180)
T cd03214 81 --ALELLGLAHLADRPFNELSGGERQRV--LLARALAQEPPILLLDE----------PTSHLDIAHQIELLELLRRLAR- 145 (180)
T ss_pred --HHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH-
Confidence 44555555445667789999999999 99999999999999999 9999999999999999988753
Q ss_pred CCCCCeEEEEeeCCCCCCCccc
Q psy11254 341 DSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 341 ~~~~~v~vI~at~~~~~ld~al 362 (741)
..+.++|++||+++.+...+
T Consensus 146 --~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 146 --ERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred --hcCCEEEEEeCCHHHHHHhC
Confidence 22568999999998775433
No 151
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.71 E-value=4.5e-18 Score=181.53 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=121.7
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+.+..|++.....
T Consensus 11 ~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (303)
T TIGR01288 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDP 90 (303)
T ss_pred EEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCc
Confidence 34455566899999999999 7899999999999999999999887776643210
Q ss_pred -cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++.... + .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|+|||
T Consensus 91 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE------- 161 (303)
T TIGR01288 91 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL--TLARALINDPQLLILDE------- 161 (303)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 01111221111 0 11112334456666776666778899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+.+
T Consensus 162 ---Pt~gLD~~~~~~l~~~l~~~~~----~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 162 ---PTTGLDPHARHLIWERLRSLLA----RGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred ---CCcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhCCE
Confidence 9999999999999999998753 367999999999877654443
No 152
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.7e-18 Score=172.56 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=118.3
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------cch
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------VTS 244 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------~~~ 244 (741)
+.+.++.++++++|++.+| ++|+||||||||||+++|+|.+.+..+++..... .+.
T Consensus 8 ~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv 87 (210)
T cd03269 8 KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKV 87 (210)
T ss_pred EEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcH
Confidence 3344556899999999999 7799999999999999999998887776643210 011
Q ss_pred hhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++..... .....++...++.+++.......+.++|||+++++ .|++|+..+|.+|++|| |
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~~lllDE----------P 155 (210)
T cd03269 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKV--QFIAAVIHDPELLILDE----------P 155 (210)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------C
Confidence 122221110 11123345566666766555677899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++++|+..+..+.+++..+.. .+.+||++||+++.+..
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELAR----AGKTVILSTHQMELVEE 193 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHH----CCCEEEEECCCHHHHHH
Confidence 999999999999999988753 35699999999887653
No 153
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=2e-17 Score=164.37 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=130.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh------------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE------------------------ 246 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~------------------------ 246 (741)
.-+..++++|++|+| ++++||||+||||++|++.|.+.|..|.+....+.....
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 445789999999999 889999999999999999999999988876543322211
Q ss_pred --------HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 247 --------DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 247 --------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+..++.....++.....+.+++.......+.++|-|++.++ -++.++.++|.|||||| |
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmra--eLaaaLLh~p~VLfLDE----------p 183 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRA--ELAAALLHPPKVLFLDE----------P 183 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHH--HHHHHhcCCCcEEEecC----------C
Confidence 112233345566666666777777667888999999998887 89999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLD 369 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d 369 (741)
|-++|...+..+.+++++... ..+.+|+.|||+.+.+...+.|.-.+|
T Consensus 184 TvgLDV~aq~~ir~Flke~n~---~~~aTVllTTH~~~di~~lc~rv~~I~ 231 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNE---ERQATVLLTTHIFDDIATLCDRVLLID 231 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHH---hhCceEEEEecchhhHHHhhhheEEee
Confidence 999999999999999998875 568899999999999987777644443
No 154
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.71 E-value=2e-17 Score=164.54 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=113.4
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------- 242 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------- 242 (741)
+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+.+......
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 345889999999999 78999999999999999999998877766432100
Q ss_pred -chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... + .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE-------- 153 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRV--AIAGAVAMRPDVLLLDE-------- 153 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 0001111100 0 01122344556666776666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.
T Consensus 154 --Pt~~LD~~~~~~~~~~l~~~~~----~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 --PTAGLDPAGREQMLAILRRLRA----EGMTVVISTHDVDL 189 (190)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeecccc
Confidence 9999999999999999988753 35799999999875
No 155
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.5e-18 Score=167.13 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=126.4
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch----------hhHHHH---------
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS----------KEDMAI--------- 250 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~----------~~~~~~--------- 250 (741)
.....++++++.++.| +.++||+|+|||||+|+|+|...+..+++........ ..++++
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 6777899999999999 8899999999999999999999998887765421100 001110
Q ss_pred ---------------------H---hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 251 ---------------------L---MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 251 ---------------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
+ ...+.+.++.++++.+++....-...+++|||++||| .+++|+..+|.||+-|
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV--aIARaL~Q~pkiILAD 172 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV--AIARALVQQPKIILAD 172 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH--HHHHHHhcCCCEEecC
Confidence 0 1123345566778888888777788899999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
| |.+++||...+.++++|..+.. ..++++|+.-|+.+..-.-+.|
T Consensus 173 E----------PvasLDp~~a~~Vm~~l~~in~---~~g~Tvi~nLH~vdlA~~Y~~R 217 (258)
T COG3638 173 E----------PVASLDPESAKKVMDILKDINQ---EDGITVIVNLHQVDLAKKYADR 217 (258)
T ss_pred C----------cccccChhhHHHHHHHHHHHHH---HcCCEEEEEechHHHHHHHHhh
Confidence 9 9999999999999999998876 5789999999988865443433
No 156
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.5e-18 Score=175.50 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=118.1
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..+++++++++++| ++|+||||+|||||+++|+|.+.+..|++.....
T Consensus 9 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 88 (239)
T cd03296 9 SKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred EEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCC
Confidence 33444556899999999999 7899999999999999999998877666543210
Q ss_pred cchhhHHHHHhh----------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 VTSKEDMAILMG----------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++..... .....++..+++.+++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 89 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE---- 162 (239)
T cd03296 89 MTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRV--ALARALAVEPKVLLLDE---- 162 (239)
T ss_pred CCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC----
Confidence 011122221110 01112344556666776556777899999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 163 ------P~~~LD~~~~~~l~~~l~~~~~---~~~~tvii~sH~~~~~~~ 202 (239)
T cd03296 163 ------PFGALDAKVRKELRRWLRRLHD---ELHVTTVFVTHDQEEALE 202 (239)
T ss_pred ------CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235689999999886643
No 157
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.1e-17 Score=160.83 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=111.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-ceeeeccccc---------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-FLKVVSSLFV--------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-~~~v~~~~~~--------------------- 242 (741)
+.+-|+...++++++++++++ ..|+||+||||||++|++....... ..++.|...+
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGM 92 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhee
Confidence 445578889999999999999 6799999999999999999765432 1222222111
Q ss_pred ----------chhhHHHHHhh------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 ----------TSKEDMAILMG------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 ----------~~~~~~~~~~~------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
+..+++++... ..++..+...+....+. +..++....+|||++|++ ++++|++.+|.|
T Consensus 93 VFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL--cIARalAv~PeV 170 (253)
T COG1117 93 VFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL--CIARALAVKPEV 170 (253)
T ss_pred eccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH--HHHHHHhcCCcE
Confidence 11223333211 12233344444433332 223444567999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++|| |++.+||-+...+.+++.++.. +.+||++||++...-
T Consensus 171 lLmDE----------PtSALDPIsT~kIEeLi~eLk~-----~yTIviVTHnmqQAa 212 (253)
T COG1117 171 LLMDE----------PTSALDPISTLKIEELITELKK-----KYTIVIVTHNMQQAA 212 (253)
T ss_pred EEecC----------cccccCchhHHHHHHHHHHHHh-----ccEEEEEeCCHHHHH
Confidence 99999 9999999999999999999874 679999999887543
No 158
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.71 E-value=5e-18 Score=185.96 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=124.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.+..++++++|.+++| ++|+||||+|||||+|+|+|.+.+..+++.....
T Consensus 9 ls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSL 88 (402)
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCC
Confidence 344455677899999999999 7899999999999999999999887776653211
Q ss_pred ---cchhhHHHHHh----------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 242 ---VTSKEDMAILM----------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 242 ---~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
....+.+.... ......++..+++.+++.......+.++|||++|++ .+++|+.++|.||||||
T Consensus 89 ~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv--~IArAL~~~P~iLLLDE- 165 (402)
T PRK09536 89 SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV--LLARALAQATPVLLLDE- 165 (402)
T ss_pred CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC-
Confidence 00111111100 011233456677777877777788999999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.++|.++.. .+.+||++||+++.+...+.|
T Consensus 166 ---------PtsgLD~~~~~~l~~lL~~l~~----~g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 166 ---------PTASLDINHQVRTLELVRRLVD----DGKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEECCHHHHHHhCCE
Confidence 9999999999999999998863 356999999999987654444
No 159
>KOG0743|consensus
Probab=99.71 E-value=1.1e-16 Score=170.34 Aligned_cols=175 Identities=26% Similarity=0.380 Sum_probs=133.5
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+|+.+.==.+.|++|.+.+.--..+++.++.+|....+|.||||||||||||++-|+|+.++.+...+.....-
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 567777666788889999888878899999999999999999999999999999999999999887666532110
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC---Ccc-
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT---SAD- 323 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~---~lD- 323 (741)
.... ++.++-.+ .+-+||+|.+||+-+..+..... ..+
T Consensus 273 -----------------------------------~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~ 314 (457)
T KOG0743|consen 273 -----------------------------------LDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEG 314 (457)
T ss_pred -----------------------------------CcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccC
Confidence 0001 23334332 34579999999987653332221 111
Q ss_pred HHHHHHHHHHHHhccCCCCCC--CeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 324 REIQRTLMELLNQMDGFDSLG--QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~--~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
....-+|..+|+.+||+.+.. ...||+|||+++-|||||+||||+|.+|+++.-+..+-..+
T Consensus 315 ~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~L 378 (457)
T KOG0743|consen 315 DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTL 378 (457)
T ss_pred CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHH
Confidence 134567889999999987665 67899999999999999999999999999998887765444
No 160
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.1e-18 Score=176.53 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=119.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----------c----------cchh
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----------F----------VTSK 245 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----------~----------~~~~ 245 (741)
+.+.+..++++++|++++| ++|+||||||||||+++|+|.+.+..+++.... + .+..
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 9 ADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred EEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHH
Confidence 3344556899999999999 789999999999999999999988777664311 0 0111
Q ss_pred hHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+++.... + .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |+
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl--~laral~~~p~lllLDE----------Pt 156 (255)
T PRK11248 89 DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV--GIARALAANPQLLLLDE----------PF 156 (255)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CC
Confidence 2222111 0 11123455666777776555677899999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~a 361 (741)
+++|+..+..+.+++..+.. ..+.+||++||+++.+...
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~---~~g~tviivsH~~~~~~~~ 195 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQ---ETGKQVLLITHDIEEAVFM 195 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHh
Confidence 99999999999999988732 1356899999999877543
No 161
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.71 E-value=6e-18 Score=172.06 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=116.4
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------cchhhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------VTSKED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~~~~~~ 247 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..+++..... .+..++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 6899999999999 7899999999999999999998887666543210 011112
Q ss_pred HHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 248 MAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 248 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
+..... .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~illlDE----------Pt~~ 166 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV--AIARALVHDPPVLLLDE----------PTTG 166 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCcC
Confidence 221110 11223445567777776666778899999999999 99999999999999999 9999
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 167 LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 167 LDVMATRALREFIRQLRA----LGKCILFSTHIMQEVER 201 (218)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHH
Confidence 999999999999998753 35689999999987654
No 162
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.71 E-value=6e-18 Score=171.42 Aligned_cols=157 Identities=17% Similarity=0.271 Sum_probs=117.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+....++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 7 ~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (213)
T cd03262 7 HKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN 86 (213)
T ss_pred EEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc
Confidence 33344456899999999999 78999999999999999999998877766432110
Q ss_pred -----chhhHHHHHh-------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 -----TSKEDMAILM-------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 -----~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
...+++.... ......++...++.+++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 87 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE--- 161 (213)
T cd03262 87 LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRV--AIARALAMNPKVMLFDE--- 161 (213)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHH--HHHHHHhcCCCEEEEeC---
Confidence 0011111100 011122344555666666555777889999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 162 -------P~~~LD~~~~~~l~~~l~~~~~----~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 162 -------PTSALDPELVGEVLDVMKDLAE----EGMTMVVVTHEMGFARE 200 (213)
T ss_pred -------CccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 9999999999999999998863 35689999999987753
No 163
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=1.4e-17 Score=168.80 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=119.8
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------cc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------------VT 243 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------------~~ 243 (741)
..+.++.++++++|++.+| ++|+||||||||||+++|+|.+.+..|++..... .+
T Consensus 19 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t 98 (214)
T PRK13543 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLS 98 (214)
T ss_pred EecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCc
Confidence 3344556899999999999 7899999999999999999999887776643211 01
Q ss_pred hhhHHHHHh---hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 244 SKEDMAILM---GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 244 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
..+++.... +.....++..+++.+++.......+..+|||+++++ ++++|+..+|++|++|| |++
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE----------Pt~ 166 (214)
T PRK13543 99 TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRL--ALARLWLSPAPLWLLDE----------PYA 166 (214)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------Ccc
Confidence 111111111 111122334455666666556777899999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++|+..++.+.+++..+.. .+.++|++||+++.+...+.+
T Consensus 167 ~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 167 NLDLEGITLVNRMISAHLR----GGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred cCCHHHHHHHHHHHHHHHh----CCCEEEEEecChhhhhhhcce
Confidence 9999999999999988753 346899999999988755543
No 164
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=1.1e-16 Score=168.57 Aligned_cols=167 Identities=25% Similarity=0.376 Sum_probs=121.4
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCC---CceEEcCCCChHHHHHHHHHHhcCCC-------ceeeeccc
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK---GCLLYGPPGTGKTLLARAVASQLDAN-------FLKVVSSL 240 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~---GvlL~Gp~GtGKTtL~r~ia~~l~~~-------~~~v~~~~ 240 (741)
++++||+++|++|.+.+.+ ...+..+...|+.... +++|+|||||||||+|+++|..+... +..++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--- 97 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--- 97 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---
Confidence 3689999999999999887 5566777888887532 58999999999999999999877431 22221
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.++++..|.|.....++..|..| .+++|||||+|.+.+.+. ..
T Consensus 98 --------------------------------~~~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~ 140 (284)
T TIGR02880 98 --------------------------------RDDLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ER 140 (284)
T ss_pred --------------------------------HHHHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--cc
Confidence 13455677888777777788776 457999999999865431 22
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCC--CC---CCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNR--PD---TLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~--~~---~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
....+.+..|.+++. . ...++.||++++. ++ .++|++.+ ||+..|+||+++.+++..+
T Consensus 141 ~~~~~~~~~Ll~~le---~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 141 DYGQEAIEILLQVME---N--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred chHHHHHHHHHHHHh---c--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHH
Confidence 334445555555543 2 2357788888763 22 24788888 9999999999999888877
No 165
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.71 E-value=8.5e-18 Score=172.66 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=119.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.+.++.++++++|++.+| ++|+||||||||||+++|+|.+.+..|++.....
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (232)
T cd03218 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS 85 (232)
T ss_pred EEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc
Confidence 344455566899999999999 7899999999999999999998877665543210
Q ss_pred ----cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 ----VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ----~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++.... + .....++..+++.+++.......+..+|||+++++ +|++|+..+|.+|++||
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE---- 159 (232)
T cd03218 86 IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV--EIARALATNPKFLLLDE---- 159 (232)
T ss_pred ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEecC----
Confidence 01111121111 0 01122344556666776666777899999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+...+
T Consensus 160 ------Pt~~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 160 ------PFAGVDPIAVQDIQKIIKILKD----RGIGVLITDHNVRETLSIT 200 (232)
T ss_pred ------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 3568999999998765433
No 166
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.7e-18 Score=185.54 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=122.2
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------V 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~ 242 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+.++.+++..... .
T Consensus 11 ~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~ 90 (369)
T PRK11000 11 KAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHL 90 (369)
T ss_pred EEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCC
Confidence 3444556889999999999 7899999999999999999999887776643110 1
Q ss_pred chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.+... .....++..+++.+++.......+..+|||++|++ ++++|+..+|++|+|||
T Consensus 91 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv--aLAraL~~~P~lLLLDE--------- 159 (369)
T PRK11000 91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV--AIGRTLVAEPSVFLLDE--------- 159 (369)
T ss_pred CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 12223332211 12234566677788887777788899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++++..
T Consensus 160 -Pts~LD~~~~~~l~~~L~~l~~---~~g~tvI~vTHd~~~~~~ 199 (369)
T PRK11000 160 -PLSNLDAALRVQMRIEISRLHK---RLGRTMIYVTHDQVEAMT 199 (369)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH---HhCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 236799999999987654
No 167
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=1.3e-17 Score=168.13 Aligned_cols=156 Identities=20% Similarity=0.120 Sum_probs=117.1
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-----------------------T 243 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-----------------------~ 243 (741)
..+.+..++++++|++++| ++|+||||||||||+++|+|...+..|++...... .
T Consensus 10 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t 89 (207)
T PRK13539 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALT 89 (207)
T ss_pred EEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCc
Confidence 3344556889999999999 78999999999999999999988877766432110 0
Q ss_pred hhhHHHHHhh--hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 244 SKEDMAILMG--NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 244 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |+++
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE----------Pt~~ 157 (207)
T PRK13539 90 VAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRV--ALARLLVSNRPIWILDE----------PTAA 157 (207)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHH--HHHHHHhcCCCEEEEeC----------Cccc
Confidence 0111111110 01112344556666665555667789999999999 99999999999999999 9999
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+|+..+..+.+++.++.. .+.++|++||+++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 158 LDAAAVALFAELIRAHLA----QGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCchhhcc
Confidence 999999999999988753 35689999999998873
No 168
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.70 E-value=7.4e-18 Score=170.90 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=114.9
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
+.++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 46899999999999 78999999999999999999998877776432110
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++...++.+++.......+..+|||+++++ .+++|+..+|+++++||
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE--------- 162 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV--AIARAIVNSPTILIADE--------- 162 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH--HHHHHHHcCCCEEEEeC---------
Confidence 0011111110 001122344556666666555677889999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 163 -Pt~~LD~~~~~~~~~~l~~~~~----~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 163 -PTGNLDPDTTWEIMNLLKKINK----AGTTVVVATHAKELVDT 201 (214)
T ss_pred -CCCcCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 35689999999887753
No 169
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.70 E-value=1.1e-17 Score=170.56 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=114.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 35889999999999 78999999999999999999998877766432100
Q ss_pred -chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... ......++..+++.+++.......+..+|||+++++ +|++|+..+|+||++||
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~illlDE-------- 167 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRV--AIARALVNQPSLVLADE-------- 167 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhCCCCEEEEeC--------
Confidence 0011111100 001122344566666776666777899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+++.+.
T Consensus 168 --Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 168 --PTGNLDNNNAKIIFDLMLELNR---ELNTSFLVVTHDLELAK 206 (221)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHh
Confidence 9999999999999999988753 23568999999988664
No 170
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.9e-18 Score=183.07 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=124.1
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------cc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------FV 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------~~ 242 (741)
..+....+++++++++.+| ++|+||||||||||+|+|||...++.+++.... ..
T Consensus 14 ~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~ 93 (351)
T PRK11432 14 KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHM 93 (351)
T ss_pred EEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 3344556789999999999 789999999999999999999998877764321 11
Q ss_pred chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.+... ....+++..+++.+++.......+..+|||++|++ ++++|+..+|++|+|||
T Consensus 94 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRV--aLARaL~~~P~lLLLDE--------- 162 (351)
T PRK11432 94 SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRV--ALARALILKPKVLLFDE--------- 162 (351)
T ss_pred CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEcC---------
Confidence 22334443221 22345666777888887777888999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+.+..+.. ..++++|++||+++++.
T Consensus 163 -P~s~LD~~~r~~l~~~l~~l~~---~~g~tii~vTHd~~e~~ 201 (351)
T PRK11432 163 -PLSNLDANLRRSMREKIRELQQ---QFNITSLYVTHDQSEAF 201 (351)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHH
Confidence 9999999999999999988754 34679999999998754
No 171
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.70 E-value=1.9e-17 Score=170.36 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=122.7
Q ss_pred HHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc---------------cc-
Q psy11254 181 RELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL---------------FV- 242 (741)
Q Consensus 181 ~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~---------------~~- 242 (741)
..++..+..+++...++++++|.+++| ++|+||||+|||||+++|+|.+.+..+++.... ++
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence 344555556677788999999999999 789999999999999999999887766553211 00
Q ss_pred ----------chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 ----------TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ----------~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
+..+.+..... .....++...++.+++.......+..+|||+++++ .|++|+..+|++|++|
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllD 178 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRA--EIAAALLHEPEILFLD 178 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEc
Confidence 00111111110 11122334455666665555667889999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
| |++++|+..+..+.+++.++.. ..+.+||++||+++++..
T Consensus 179 E----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 179 E----------PTIGLDVVAQENIRNFLKEYNR---ERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred C----------CCCCCCHHHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHH
Confidence 9 9999999999999999998753 235689999999987653
No 172
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-17 Score=171.90 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=116.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------ 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------ 241 (741)
..++++++|++++| ++|+||||||||||+++|+|.+.+..+++.....
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 35899999999999 7899999999999999999998877666543210
Q ss_pred cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.... ......++..+++.+++.......+..+|||+++++ .|++|+..+|.||++||
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl--~la~al~~~p~lllLDE-------- 171 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV--AIARALVNNPRLVLADE-------- 171 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 01111221110 011223455667777777666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+.
T Consensus 172 --Pt~~LD~~~~~~l~~~l~~~~~---~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 172 --PTGNLDARNADSIFQLLGELNR---LQGTAFLVVTHDLQLAK 210 (233)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHHHH
Confidence 9999999999999999988743 23579999999998765
No 173
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.70 E-value=6e-18 Score=163.78 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=105.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEK 266 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (741)
+.+.+..+++++++++++| ++|+||||+|||||+++|+|.+.+..+++..........+.. ....+.+
T Consensus 8 ~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~----~~~~~~i------ 77 (163)
T cd03216 8 KRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR----DARRAGI------ 77 (163)
T ss_pred EEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH----HHHhcCe------
Confidence 3344456899999999999 789999999999999999999998888776432110000000 0000001
Q ss_pred cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCe
Q psy11254 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346 (741)
Q Consensus 267 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v 346 (741)
..+.++|||+.+++ .+++|+..+|++|++|| |++++|+..++.+.+++.++.. .+.
T Consensus 78 --------~~~~qLS~G~~qrl--~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~~----~~~ 133 (163)
T cd03216 78 --------AMVYQLSVGERQMV--EIARALARNARLLILDE----------PTAALTPAEVERLFKVIRRLRA----QGV 133 (163)
T ss_pred --------EEEEecCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHHH----CCC
Confidence 11123999999999 99999999999999999 9999999999999999988753 356
Q ss_pred EEEEeeCCCCCCCcccc
Q psy11254 347 KMIMATNRPDTLDPALL 363 (741)
Q Consensus 347 ~vI~at~~~~~ld~al~ 363 (741)
++|++||+++.+...+.
T Consensus 134 tiii~sh~~~~~~~~~d 150 (163)
T cd03216 134 AVIFISHRLDEVFEIAD 150 (163)
T ss_pred EEEEEeCCHHHHHHhCC
Confidence 99999999987754333
No 174
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.8e-16 Score=172.25 Aligned_cols=161 Identities=15% Similarity=0.227 Sum_probs=130.0
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
.+...|+.-..+++++|++.+| +.|+|.||+|||||+|+|+|.+.++.+++.....
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl 92 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQEL 92 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeech
Confidence 4566788888999999999999 7799999999999999999999999888764311
Q ss_pred -----cchhhHHH----------HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 242 -----VTSKEDMA----------ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 242 -----~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
++..+++. .+....+.+++...+..+++.......+..++.+++|.| .+++|+..++.||+||
T Consensus 93 ~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V--eIArAl~~~arllIlD 170 (500)
T COG1129 93 SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV--EIARALSFDARVLILD 170 (500)
T ss_pred hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH--HHHHHHhcCCCEEEEc
Confidence 11111111 111234455667777777775557889999999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
| ||++++....+.|.+++..+.. .++.+|++||+++++-..+
T Consensus 171 E----------PTaaLt~~E~~~Lf~~ir~Lk~----~Gv~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 171 E----------PTAALTVKETERLFDLIRRLKA----QGVAIIYISHRLDEVFEIA 212 (500)
T ss_pred C----------CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEcCcHHHHHHhc
Confidence 9 9999999999999999999985 7899999999988775433
No 175
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.70 E-value=1.3e-17 Score=172.56 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=117.4
Q ss_pred hccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 188 ELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 188 ~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
.+.+. ++.++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 8 ~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 87 (243)
T TIGR02315 8 SKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87 (243)
T ss_pred eeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCC
Confidence 33444 556899999999999 78999999999999999999998877766432110
Q ss_pred -------chhhHHHHHh--------------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 243 -------TSKEDMAILM--------------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 243 -------~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
+..+++.... ......++..+++.+++.......+..+|||+++++ +|++|+..+|.
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~ 165 (243)
T TIGR02315 88 YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV--AIARALAQQPD 165 (243)
T ss_pred CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHhcCCC
Confidence 0001111000 001112334445556665555677889999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|++|| |++++|+..+..+.+++.++.. ..+.++|++||+++.+...+
T Consensus 166 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~tH~~~~~~~~~ 213 (243)
T TIGR02315 166 LILADE----------PIASLDPKTSKQVMDYLKRINK---EDGITVIINLHQVDLAKKYA 213 (243)
T ss_pred EEEEeC----------CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHhc
Confidence 999999 9999999999999999988743 23568999999998775433
No 176
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.70 E-value=1.8e-17 Score=170.60 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=118.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.++.+++++++++.+| ++|+||||||||||+++|+|...+..|++.....
T Consensus 8 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~ 87 (236)
T TIGR03864 8 SFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDL 87 (236)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcc
Confidence 33344556899999999999 7899999999999999999999887776643210
Q ss_pred -cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++..... .....++..+++.+++.......+..+|||+.+++ +|++|+..+|+||++||
T Consensus 88 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE------- 158 (236)
T TIGR03864 88 DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRV--EIARALLHRPALLLLDE------- 158 (236)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC-------
Confidence 001112211110 01122344556666776656778899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+++.+.
T Consensus 159 ---P~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 159 ---PTVGLDPASRAAIVAHVRALCR---DQGLSVLWATHLVDEIE 197 (236)
T ss_pred ---CccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhHh
Confidence 9999999999999999988752 13568999999999875
No 177
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.4e-17 Score=174.74 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=123.0
Q ss_pred HHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--------------------
Q psy11254 184 REVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------- 241 (741)
Q Consensus 184 ~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------- 241 (741)
.+.+...+....++++++|++++| ++|+||||+|||||+++|+|.+.+..|++.....
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 345666677788999999999999 7899999999999999999999887666543110
Q ss_pred ----------cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 242 ----------VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 242 ----------~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
.+..+++.... ......++..+++.+++.......+..+|||+++++ ++++|+..+|.||++
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~lAral~~~p~illL 184 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV--GLARALAVDPDILLM 184 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEE
Confidence 01111222111 011123345566777776666778889999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|| |++++|+..+..+.+++.++.. ..+.++|++||+++.+..
T Consensus 185 DE----------Pt~~LD~~~~~~l~~~l~~~~~---~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 185 DE----------AFSALDPLIRREMQDELLRLQA---ELQKTIVFITHDLDEALR 226 (269)
T ss_pred cC----------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 99 9999999999999999988753 235699999999887653
No 178
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.70 E-value=1.3e-17 Score=179.50 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=122.2
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------------cc
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------------------VT 243 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------------------~~ 243 (741)
.++++++|++++| ++|+||||||||||+|+|+|...++.+++..... .+
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 5899999999999 7799999999999999999999888776643211 01
Q ss_pred hhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++.+... .....++..+++.+++.......+.++|||++|++ .+++|+..+|++|++||
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV--~IARAL~~~P~iLLlDE---------- 166 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV--AIARALASNPKVLLCDE---------- 166 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHHhCCCEEEEeC----------
Confidence 1122322111 12334566778888888777888999999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+.....+.+++..+.. ..+++||++||+++.+...+.
T Consensus 167 Pts~LD~~t~~~i~~lL~~l~~---~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 167 ATSALDPATTQSILELLKEINR---RLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999998864 236799999999987754443
No 179
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.70 E-value=8.1e-18 Score=182.57 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=125.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCc--eeeeccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANF--LKVVSSL----------------------- 240 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~--~~v~~~~----------------------- 240 (741)
.+.+.+..++++++++++.| ++|+||||||||||+|+|||...++. +++....
T Consensus 12 ~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~ 91 (362)
T TIGR03258 12 RVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALF 91 (362)
T ss_pred EEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccC
Confidence 33444556889999999999 78999999999999999999998887 7764321
Q ss_pred -ccchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 241 -FVTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 241 -~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
..+..+++.+... .....++..+++.+++....+..+.++|||++|++ ++++|+..+|.+|+|||
T Consensus 92 p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv--aLARAL~~~P~llLLDE------ 163 (362)
T TIGR03258 92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI--AIARAIAIEPDVLLLDE------ 163 (362)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC------
Confidence 0122334443221 12344567788888888888889999999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCC-CeEEEEeeCCCCCCCc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLG-QVKMIMATNRPDTLDP 360 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~-~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+.+.++.. .. ++++|++||+++++..
T Consensus 164 ----P~s~LD~~~r~~l~~~l~~l~~---~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 164 ----PLSALDANIRANMREEIAALHE---ELPELTILCVTHDQDDALT 204 (362)
T ss_pred ----ccccCCHHHHHHHHHHHHHHHH---hCCCCEEEEEeCCHHHHHH
Confidence 9999999999999999988764 22 6799999999987643
No 180
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=8e-17 Score=169.57 Aligned_cols=153 Identities=25% Similarity=0.368 Sum_probs=119.1
Q ss_pred HHHHhcCCC---CCCceEEEcCCCCChHHHHHHHHHHhC-------ccEEEEechhhhccccchHHHHHHHHHHHHHhcC
Q psy11254 514 ELFQRVGIT---PPKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 514 ~~~~~~~~~---~~~~~ll~G~~G~GKt~l~~~~a~~~~-------~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~ 583 (741)
......|+. ++.+++|+||||||||++|+++|..+. .+++.++.+++++.|+|+++.+++.+|+.|..
T Consensus 45 ~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~-- 122 (284)
T TIGR02880 45 RLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMG-- 122 (284)
T ss_pred HHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccC--
Confidence 344455654 345799999999999999999998773 36899999999999999999889999998753
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC--C---CCCccccCCCCcceEEEc
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP--D---TLDPALLRPGRLDRKIEI 658 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~--~---~ld~al~rpgR~d~~i~~ 658 (741)
+||||||++.+...+.. .. ...++...|+..|+. ...+++||++|+.. + .++|++.| ||+..|+|
T Consensus 123 -gvL~iDEi~~L~~~~~~--~~---~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~f 192 (284)
T TIGR02880 123 -GVLFIDEAYYLYRPDNE--RD---YGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDF 192 (284)
T ss_pred -cEEEEechhhhccCCCc--cc---hHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEe
Confidence 79999999998654321 11 223555666777763 34678888887643 3 35899999 99999999
Q ss_pred CCCCHHHHHHHHHHhhcCcc
Q psy11254 659 PLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 659 ~~p~~~~r~~i~~~~~~~~~ 678 (741)
|+|+.+++..|++.++....
T Consensus 193 p~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 193 PDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred CCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999998643
No 181
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.70 E-value=7.4e-18 Score=183.59 Aligned_cols=156 Identities=16% Similarity=0.247 Sum_probs=122.8
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------ccc
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------FVT 243 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------~~~ 243 (741)
.+....++++++|++.+| ++|+||||||||||+|+|||...++.+++.... ..+
T Consensus 23 ~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred EECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 344445788899999999 789999999999999999999988777664321 112
Q ss_pred hhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++.+... ....+++..+++.+++.......+.++|||++|++ +|++|+..+|++|+|||
T Consensus 103 v~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRV--aLARaL~~~P~llLLDE---------- 170 (375)
T PRK09452 103 VFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRV--AIARAVVNKPKVLLLDE---------- 170 (375)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------
Confidence 2334443221 12234566777888888777888999999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|...+..+.+.|..+.. ..++++|++||+++++..
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~---~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQR---KLGITFVFVTHDQEEALT 210 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988764 246799999999886543
No 182
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.70 E-value=5e-18 Score=180.91 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=124.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
+.+.+..++++++|.+++| ++|+||||+|||||+|+|+|.+.++.|++.....
T Consensus 10 ~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~ 89 (301)
T TIGR03522 10 KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLD 89 (301)
T ss_pred EEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCC
Confidence 3445567899999999999 7899999999999999999999888777643211
Q ss_pred cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+.+.... + .....++...++.+++.......+..+|||+++++ .|++|+.++|.+||+||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~~~p~lliLDE-------- 159 (301)
T TIGR03522 90 MYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV--GLAQALIHDPKVLILDE-------- 159 (301)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 01111222111 1 11233455667777777767788999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP 365 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~ 365 (741)
|++++|+..+..+.+++..+.. +.+||++||+++++...+.|.
T Consensus 160 --Pt~gLD~~~~~~l~~~l~~~~~-----~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 160 --PTTGLDPNQLVEIRNVIKNIGK-----DKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred --CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHHHHHHhCCEE
Confidence 9999999999999999998742 368999999999887655543
No 183
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.70 E-value=1.5e-17 Score=169.36 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=116.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------cchhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------VTSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~~~~~ 246 (741)
..+++++++++.+| ++|+||||+|||||+++|+|.+.+..+.+..... .+..+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 56899999999999 7899999999999999999999887776543211 01111
Q ss_pred HHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 247 DMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 247 ~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
++.... ......++..+++.+++.......+..+|||+.+++ .|++|+..+|++|++|| |++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE----------P~~ 162 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL--SLAIALIGGPSVLLLDE----------PTS 162 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH--HHHHHHhcCCCEEEECC----------CCC
Confidence 222111 011123345566666766555677889999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|+.....+.+++..+.. +.++|++||+++.+...+.
T Consensus 163 ~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 163 GLDPASRRAIWDLILEVRK-----GRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHHHHhcC
Confidence 9999999999999988753 2689999999987764443
No 184
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.70 E-value=1.8e-17 Score=167.09 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=117.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
+.+.+..+.++++++|.+++| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 83 (206)
T TIGR03608 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ 83 (206)
T ss_pred eEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence 334444556899999999999 78999999999999999999998877766432110
Q ss_pred --------chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 --------TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 --------~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+++.... ......++...++.+++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~--~laral~~~p~llllDE- 160 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRV--ALARAILKDPPLILADE- 160 (206)
T ss_pred chhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC-
Confidence 0001111100 001123344566666776666778899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+
T Consensus 161 ---------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 161 ---------PTGSLDPKNRDEVLDLLLELND----EGKTIIIVTHDPEVA 197 (206)
T ss_pred ---------CcCCCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHH
Confidence 9999999999999999988753 256899999998754
No 185
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1e-17 Score=169.42 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=117.0
Q ss_pred ccCCChHHHhhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------V 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~ 242 (741)
+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++..... .
T Consensus 8 ~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (211)
T cd03264 8 KRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF 87 (211)
T ss_pred EEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccC
Confidence 3344456899999999999 6699999999999999999999887776643210 0
Q ss_pred chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... + .....++..+++.+++.......+..+|||+++++ .+++|+..+|++|++||
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE--------- 156 (211)
T cd03264 88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV--GIAQALVGDPSILIVDE--------- 156 (211)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH--HHHHHHhcCCCEEEEcC---------
Confidence 1111222110 0 11123345566666766555678899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++..+.. +.++|++||+++.+..
T Consensus 157 -Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~vsH~~~~~~~ 194 (211)
T cd03264 157 -PTAGLDPEERIRFRNLLSELGE-----DRIVILSTHIVEDVES 194 (211)
T ss_pred -CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEcCCHHHHHH
Confidence 9999999999999999988753 2689999999987753
No 186
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-17 Score=181.18 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=119.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------------------V 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------------------~ 242 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++..... .
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 46899999999999 7899999999999999999999887776643211 0
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++..+++.+++.......+.++|||+++++ .+++|+..+|.|||+||
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv--~lAraL~~~p~iLlLDE--------- 166 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV--AIARALASNPKVLLCDE--------- 166 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC---------
Confidence 1111222111 011223455667777777666778899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 167 -Pts~LD~~~~~~l~~~L~~l~~---~~g~tiilvtH~~~~i~~~~ 208 (343)
T PRK11153 167 -ATSALDPATTRSILELLKDINR---ELGLTIVLITHEMDVVKRIC 208 (343)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998753 23679999999998765433
No 187
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.69 E-value=9.9e-18 Score=169.20 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=117.6
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 8 ~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (208)
T cd03268 8 KTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNL 87 (208)
T ss_pred EEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccC
Confidence 3344556899999999999 78999999999999999999988877766442210
Q ss_pred chhhHHHHHhh--hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 243 TSKEDMAILMG--NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 243 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+..+++..... .....++..+++.+++.......+..+|||+++++ ++++|+..+|.+|++|| |++
T Consensus 88 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE----------Pt~ 155 (208)
T cd03268 88 TARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRL--GIALALLGNPDLLILDE----------PTN 155 (208)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHH--HHHHHHhcCCCEEEECC----------Ccc
Confidence 00111111100 00122344556666666556777899999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 156 ~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 156 GLDPDGIKELRELILSLRD----QGITVLISSHLLSEIQK 191 (208)
T ss_pred cCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHH
Confidence 9999999999999988753 35689999999987754
No 188
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.4e-17 Score=171.07 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=115.2
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------c
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-----------------------------T 243 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-----------------------------~ 243 (741)
.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++...... +
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 6899999999999 78999999999999999999998877766432110 0
Q ss_pred hhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++..... ......+..+++.+++.......+..+|||+.+++ +|++|+..+|.+|+|||
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~lllLDE---------- 166 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV--GIARALANNPKVLLCDE---------- 166 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH--HHHHHHhcCCCEEEecC----------
Confidence 1111111100 01122344556666776666677899999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~---~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 167 ATSALDPETTQSILALLRDINR---ELGLTIVLITHEMEVVKR 206 (233)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235699999999987654
No 189
>PRK10908 cell division protein FtsE; Provisional
Probab=99.69 E-value=1.2e-17 Score=170.46 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=116.3
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c---------------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V--------------------------- 242 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~--------------------------- 242 (741)
.+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++..... +
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 456899999999999 7899999999999999999999888777643211 0
Q ss_pred -chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... + .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE-------- 163 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV--GIARAVVNKPAVLLADE-------- 163 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHH--HHHHHHHcCCCEEEEeC--------
Confidence 0011111110 0 01112334556666666556677889999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.++|++||+++++...+
T Consensus 164 --Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~~~ 204 (222)
T PRK10908 164 --PTGNLDDALSEGILRLFEEFNR----VGVTVLMATHDIGLISRRS 204 (222)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998753 3568999999998776433
No 190
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.4e-17 Score=172.03 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=117.6
Q ss_pred hccCCC-hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 188 ELPLLN-PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 188 ~~~~~~-~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
.+.+.+ ..++++++|++++| ++|+||||||||||+++|+|.+.+..+++.....
T Consensus 7 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 86 (241)
T cd03256 7 SKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86 (241)
T ss_pred EEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEccc
Confidence 344444 56899999999999 7899999999999999999998877666543210
Q ss_pred ------cchhhHHHHHh-----------h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ------VTSKEDMAILM-----------G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ------~~~~~~~~~~~-----------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
.+..+++.... + .....++...++.+++.......+..+|||+++++ .+++|+..+|.
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~ 164 (241)
T cd03256 87 FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV--AIARALMQQPK 164 (241)
T ss_pred CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH--HHHHHHhcCCC
Confidence 00011111100 0 01112334455666666555677889999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
||++|| |++++|+..+..+.+++..+.. ..+.+||++||+++.+...+
T Consensus 165 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~~~~~~ 212 (241)
T cd03256 165 LILADE----------PVASLDPASSRQVMDLLKRINR---EEGITVIVSLHQVDLAREYA 212 (241)
T ss_pred EEEEeC----------ccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhC
Confidence 999999 9999999999999999988753 23568999999998775433
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.69 E-value=2.7e-17 Score=177.98 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=124.1
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------------- 241 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------------- 241 (741)
++...++++++|++++| ++|+||||||||||+|+|+|.+.+..+++.....
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 44556789999999999 7899999999999999999999888776643210
Q ss_pred ---cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 242 ---VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 242 ---~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
.+..+++.+... .....++..+++.+++.......+..+|||++|++ .+++|+..+|.||++||
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV--~lARAL~~~p~iLLlDE----- 155 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRV--GLARALAAEPDILLMDE----- 155 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC-----
Confidence 111223333211 12345566778888887777888999999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++++...+
T Consensus 156 -----P~saLD~~~r~~l~~~l~~l~~---~~~~Tii~vTHd~~ea~~~~ 197 (363)
T TIGR01186 156 -----AFSALDPLIRDSMQDELKKLQA---TLQKTIVFITHDLDEAIRIG 197 (363)
T ss_pred -----CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 23679999999998765433
No 192
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.69 E-value=1.8e-17 Score=172.25 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=118.4
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.++.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (250)
T PRK11264 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGF 89 (250)
T ss_pred EEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEE
Confidence 34444556899999999999 7899999999999999999998877676532110
Q ss_pred ----------cchhhHHHHHh----h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ----------VTSKEDMAILM----G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ----------~~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++.... + .....++..+++.+++.......+..+|||+.+++ +|++|+..+|.||+
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv--~la~al~~~p~lll 167 (250)
T PRK11264 90 VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV--AIARALAMRPEVIL 167 (250)
T ss_pred EecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH--HHHHHHhcCCCEEE
Confidence 00111121100 0 01122344556666776555677899999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 168 LDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 168 FDE----------PTSALDPELVGEVLNTIRQLAQ----EKRTMVIVTHEMSFARDVA 211 (250)
T ss_pred EeC----------CCccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhc
Confidence 999 9999999999999999988753 3568999999998775433
No 193
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.69 E-value=1e-17 Score=181.56 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=123.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------V 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~ 242 (741)
+.+....++++++|++..| ++|+||||||||||+|+|+|.+.++.+++..... .
T Consensus 10 ~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~ 89 (353)
T PRK10851 10 KSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM 89 (353)
T ss_pred EEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCC
Confidence 3444556889999999999 7899999999999999999999887776643210 1
Q ss_pred chhhHHHHHhh----------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 243 TSKEDMAILMG----------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 243 ~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|++|++||
T Consensus 90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv--alArAL~~~P~llLLDE----- 162 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV--ALARALAVEPQILLLDE----- 162 (353)
T ss_pred cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC-----
Confidence 12223332211 11234566778888887777888999999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++++..
T Consensus 163 -----P~s~LD~~~r~~l~~~L~~l~~---~~g~tii~vTHd~~ea~~ 202 (353)
T PRK10851 163 -----PFGALDAQVRKELRRWLRQLHE---ELKFTSVFVTHDQEEAME 202 (353)
T ss_pred -----CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988764 346799999999987654
No 194
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.69 E-value=1.8e-17 Score=171.31 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=119.6
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
...+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 9 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (242)
T TIGR03411 9 SVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTV 88 (242)
T ss_pred EEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEecccccc
Confidence 34444556899999999999 7799999999999999999998887665543211
Q ss_pred ---cchhhHHHHHhh--------------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ---VTSKEDMAILMG--------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ---~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++..... .....++..+++.+++.......+..+|||+.+++ +|++|+..+|.+|+
T Consensus 89 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv--~laral~~~p~~ll 166 (242)
T TIGR03411 89 FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL--EIGMLLMQDPKLLL 166 (242)
T ss_pred CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 011111111100 01123345566666776666778899999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+.
T Consensus 167 lDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 167 LDE----------PVAGMTDEETEKTAELLKSLAG-----KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred ecC----------CccCCCHHHHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHhCC
Confidence 999 9999999999999999998753 3589999999987764333
No 195
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.1e-17 Score=153.72 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=118.0
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------cchhhHHH
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------VTSKEDMA 249 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------~~~~~~~~ 249 (741)
...+++++++.+..| +.+.||+|||||||++.+||...|.-+++..... ....++++
T Consensus 17 ~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 355999999999999 7899999999999999999999888777654311 11123444
Q ss_pred HHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 250 ILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 250 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+-. ..+...++...+..+++.....+.+-++|||++|++ -+++|++.+|..||+|| |...+|
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRv--GiARALa~eP~~LlLDE----------PfgAlD 164 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRV--GIARALAVEPQLLLLDE----------PFGALD 164 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHH--HHHHHhhcCcceEeecC----------chhhHH
Confidence 322 122334456677778888888899999999999999 99999999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
.-.++.+.++|-.+-. ..+..++++||+.++
T Consensus 165 a~tRe~mQelLldlw~---~tgk~~lliTH~ieE 195 (259)
T COG4525 165 ALTREQMQELLLDLWQ---ETGKQVLLITHDIEE 195 (259)
T ss_pred HHHHHHHHHHHHHHHH---HhCCeEEEEeccHHH
Confidence 9999988888765543 355679999998773
No 196
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=3.8e-17 Score=163.87 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=115.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..+++++++++.+| ++|+||||||||||+++|+|...+..+++......
T Consensus 9 ~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 88 (200)
T PRK13540 9 FDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPY 88 (200)
T ss_pred EEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcC
Confidence 3344556899999999999 88999999999999999999998887766532110
Q ss_pred -chhhHHHHHhh-hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 243 -TSKEDMAILMG-NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 243 -~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+..+++..... .....++..+++.+++.......+..+|||+.+++ ++++|+..+|.+|++|| |++
T Consensus 89 ~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv--~laral~~~p~~lilDE----------P~~ 156 (200)
T PRK13540 89 LTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQV--ALLRLWMSKAKLWLLDE----------PLV 156 (200)
T ss_pred CCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHH--HHHHHHhcCCCEEEEeC----------CCc
Confidence 00111111000 00112334455555555444667788999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++|+..+..+.+++.++.. .+.++|++||+++.++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRA----KGGAVLLTSHQDLPLN 191 (200)
T ss_pred ccCHHHHHHHHHHHHHHHH----cCCEEEEEeCCchhcc
Confidence 9999999999999998743 3568999999999887
No 197
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=1.7e-17 Score=171.26 Aligned_cols=159 Identities=13% Similarity=0.250 Sum_probs=119.4
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.++.++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++......
T Consensus 8 ~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 87 (240)
T PRK09493 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY 87 (240)
T ss_pred EEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccc
Confidence 33444556899999999999 77999999999999999999998877765432110
Q ss_pred -----chhhHHHHHh-------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 -----TSKEDMAILM-------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 -----~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
+..+++.... ......++..+++.+++.......+..+|||+++++ .|++|+..+|.+|++||
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE--- 162 (240)
T PRK09493 88 LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRV--AIARALAVKPKLMLFDE--- 162 (240)
T ss_pred cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHH--HHHHHHhcCCCEEEEcC---
Confidence 1111221110 011123345566667776556777889999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.++|++||+++.+...+
T Consensus 163 -------P~~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~~~ 203 (240)
T PRK09493 163 -------PTSALDPELRHEVLKVMQDLAE----EGMTMVIVTHEIGFAEKVA 203 (240)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 3568999999998775433
No 198
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.69 E-value=1.4e-17 Score=172.57 Aligned_cols=160 Identities=17% Similarity=0.220 Sum_probs=118.7
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----ccc------hh--hHHHHHh-
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FVT------SK--EDMAILM- 252 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~~------~~--~~~~~~~- 252 (741)
+.+.++.++++++|.+++| ++|+||||+|||||+++|+|.+.+..+++.... ++. .. ..+....
T Consensus 12 ~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~ 91 (251)
T PRK09544 12 VSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLR 91 (251)
T ss_pred EEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHh
Confidence 3344556889999999999 889999999999999999999988777664321 000 00 0111110
Q ss_pred --hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHH
Q psy11254 253 --GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 330 (741)
Q Consensus 253 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l 330 (741)
......++..+++.+++.......+..+|||+.+++ +|++|+..+|.+|++|| |++++|+..+..+
T Consensus 92 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv--~laral~~~p~lllLDE----------Pt~~LD~~~~~~l 159 (251)
T PRK09544 92 LRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV--LLARALLNRPQLLVLDE----------PTQGVDVNGQVAL 159 (251)
T ss_pred ccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHH
Confidence 001122344556666666556677899999999999 99999999999999999 9999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 331 MELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 331 ~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
.+++.++.. ..+.+||++||+++.+...+.
T Consensus 160 ~~~L~~~~~---~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 160 YDLIDQLRR---ELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred HHHHHHHHH---hcCCEEEEEecCHHHHHHhCC
Confidence 999988753 225689999999998764443
No 199
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.6e-17 Score=171.64 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=119.1
Q ss_pred hccCCC-hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 188 ELPLLN-PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 188 ~~~~~~-~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
.+.+.+ ..+++++++++++| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 7 ~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (242)
T cd03295 7 TKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGL 86 (242)
T ss_pred EEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccc
Confidence 334444 56899999999999 7899999999999999999998887666543210
Q ss_pred ---cchhhHHHHHh---h---hhhhhcccccccccccCC--CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 242 ---VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPF--YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 242 ---~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~--~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
.+..+++.... + .....++..+++.+++.. .....+..+|||+.+++ +|++|+..+|.+|++||
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE--- 161 (242)
T cd03295 87 FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV--GVARALAADPPLLLMDE--- 161 (242)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH--HHHHHHhcCCCEEEecC---
Confidence 01111221110 0 111234455667777764 45677899999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+...+
T Consensus 162 -------Pt~~LD~~~~~~l~~~L~~~~~---~~g~tvii~sH~~~~~~~~~ 203 (242)
T cd03295 162 -------PFGALDPITRDQLQEEFKRLQQ---ELGKTIVFVTHDIDEAFRLA 203 (242)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEecCHHHHHHhC
Confidence 9999999999999999988753 23568999999998765433
No 200
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.3e-17 Score=159.73 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=124.8
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh----hHHHH----------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK----EDMAI---------- 250 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~----~~~~~---------- 250 (741)
+.+.+.++.++++++++++.| ..++||||+|||||++.+++...+..+.+.......+. .++..
T Consensus 37 v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 37 VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 456788999999999999999 88999999999999999999987743333211110000 00000
Q ss_pred ----------------------Hh----hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 251 ----------------------LM----GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 251 ----------------------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
+. ......++..+++.++.....++.+..+|-|+++++ +|++|+..+|.+|+
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv--LiaRALv~~P~LLi 194 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV--LIARALVKDPELLI 194 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH--HHHHHHhcCCCEEE
Confidence 00 011233455666777777777888999999999998 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
||| |++++|...+..+.+.+.++.. ..+..++|++||+.+++.+-+.+
T Consensus 195 LDE----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 195 LDE----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred ecC----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 999 9999999999999999888764 24567899999999999875554
No 201
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.68 E-value=1.9e-17 Score=168.95 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=114.4
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (222)
T cd03224 7 NAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRI 86 (222)
T ss_pred EeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEecccccc
Confidence 33444556899999999999 88999999999999999999998877666432100
Q ss_pred ----chhhHHHHHhh----hhhhhccccccccc-ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 ----TSKEDMAILMG----NQLKRRSTHHLEKT-YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 ----~~~~~~~~~~~----~~~~~~~~~~l~~~-~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+..+++..... .....++..+++.+ ++.......+.++|||+++++ ++++|+..+|++|++||
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE------ 158 (222)
T cd03224 87 FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQML--AIARALMSRPKLLLLDE------ 158 (222)
T ss_pred CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHH--HHHHHHhcCCCEEEECC------
Confidence 00111111100 00111223334444 344445677889999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 159 ----Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~ 197 (222)
T cd03224 159 ----PSEGLAPKIVEEIFEAIRELRD----EGVTILLVEQNARFALE 197 (222)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 35699999999887654
No 202
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.8e-17 Score=171.33 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=118.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.++.+++++++++.+| ++|+||||||||||+++|+|...+..+++......
T Consensus 9 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (242)
T PRK11124 9 NCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88 (242)
T ss_pred EEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEe
Confidence 33444567899999999999 78999999999999999999998877766532110
Q ss_pred ---------chhhHHHHHh-------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 ---------TSKEDMAILM-------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ---------~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
+..+++.... ......++...++.+++.......+..+|||+++++ ++++|+..+|.++++|
T Consensus 89 q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~~~p~llilD 166 (242)
T PRK11124 89 QQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRV--AIARALMMEPQVLLFD 166 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEc
Confidence 0011111100 001122344456666776656777899999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
| |++++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 167 E----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 167 E----------PTAALDPEITAQIVSIIRELAE----TGITQVIVTHEVEVARK 206 (242)
T ss_pred C----------CCCcCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 9 9999999999999999998753 35689999999987754
No 203
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-17 Score=170.69 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=117.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+....++++++|++++| ++|+||||+|||||+++|+|.+.+..|++......
T Consensus 10 ~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 10 AKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89 (241)
T ss_pred EEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 33444556899999999999 78999999999999999999998877766432110
Q ss_pred ----chhhHHHHHh-------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 243 ----TSKEDMAILM-------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 243 ----~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
+..+++.... ......++..+++.+++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE---- 163 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRV--EIARALAANPKFILLDE---- 163 (241)
T ss_pred cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHH--HHHHHHhcCCCEEEEcC----
Confidence 0011111110 001122344455555665555677889999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.++|++||+++.+...+
T Consensus 164 ------Pt~~LD~~~~~~l~~~l~~~~~----~g~tiii~sH~~~~~~~~~ 204 (241)
T PRK10895 164 ------PFAGVDPISVIDIKRIIEHLRD----SGLGVLITDHNVRETLAVC 204 (241)
T ss_pred ------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhc
Confidence 9999999999999999988753 3568999999997665433
No 204
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.9e-17 Score=180.72 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=122.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------cc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------FV 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------~~ 242 (741)
..+.+..++++++|++..| ++|+||||||||||+|+|||...++.+++.... ..
T Consensus 27 ~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 27 KSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM 106 (377)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence 3344445788899999999 779999999999999999999988776654221 11
Q ss_pred chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.+... .+..+++..+++.+++.......+..+|||++|++ +|++|+..+|.+|+|||
T Consensus 107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV--aLARAL~~~P~lLLLDE--------- 175 (377)
T PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV--ALARSLAKRPKLLLLDE--------- 175 (377)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 22334443321 12344566778888887777888999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|...+..+.+.+.++.. ..++++|++||+++++..
T Consensus 176 -P~s~LD~~~r~~l~~~l~~l~~---~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 176 -PMGALDKKLRDRMQLEVVDILE---RVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHH
Confidence 9999999999999888877643 236799999999987543
No 205
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.68 E-value=3.5e-17 Score=167.72 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=112.5
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------cchhhHHHHHhh-
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------VTSKEDMAILMG- 253 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------~~~~~~~~~~~~- 253 (741)
++++|++++| ++|+||||+|||||+++|+|.+.+..+++..... .+..+++.....
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 5678888898 7899999999999999999999887776643210 111222222110
Q ss_pred -------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 254 -------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 254 -------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
.....++...++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |++++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE----------Pt~gLD~~~ 149 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRV--AIARALSIRPKVLLLDE----------PFGALDALT 149 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEcC----------CCcCCCHHH
Confidence 01122345566667776656778899999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 150 ~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~~ 180 (230)
T TIGR01184 150 RGNLQEELMQIWE---EHRVTVLMVTHDVDEALL 180 (230)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999999988753 235689999999987654
No 206
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.68 E-value=2.2e-17 Score=168.59 Aligned_cols=159 Identities=15% Similarity=0.187 Sum_probs=119.5
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------cch
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------VTS 244 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------~~~ 244 (741)
+.+....++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++..... .+.
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 8 KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTA 87 (223)
T ss_pred EEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCH
Confidence 3344556889999999999 7899999999999999999998877775542110 011
Q ss_pred hhHHHHHhh--hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 245 KEDMAILMG--NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 245 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
.+++..... .....++..+++.+++.......+..+|||+.+++ ++++|+..+|.+|++|| |++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv--~laral~~~p~llllDE----------P~~~L 155 (223)
T TIGR03740 88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRL--GIAIALLNHPKLLILDE----------PTNGL 155 (223)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHH--HHHHHHhcCCCEEEECC----------CccCC
Confidence 122221110 11123445566667776666777889999999999 99999999999999999 99999
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|+..+..+.+++.++.. .+.++|++||+++.+...+.
T Consensus 156 D~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 156 DPIGIQELRELIRSFPE----QGITVILSSHILSEVQQLAD 192 (223)
T ss_pred CHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHHhcC
Confidence 99999999999988753 35689999999987764443
No 207
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.68 E-value=2.1e-17 Score=172.40 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=120.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 12 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (257)
T PRK10619 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLR 91 (257)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHh
Confidence 33444556889999999999 7899999999999999999999887776543211
Q ss_pred ---------------cchhhHHHHHh-------hhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhc
Q psy11254 242 ---------------VTSKEDMAILM-------GNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNH 298 (741)
Q Consensus 242 ---------------~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~ 298 (741)
....+++.... ......++..+++.+++... ....+..+|||+++++ ++++|+..
T Consensus 92 ~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv--~laral~~ 169 (257)
T PRK10619 92 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV--SIARALAM 169 (257)
T ss_pred hceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHhc
Confidence 01111221100 01122344556677777654 3567889999999999 99999999
Q ss_pred CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 299 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 299 ~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|.+|++|| |++++|+..+..+.+++.++.. .+.++|++||+++.+...+.|
T Consensus 170 ~p~llllDE----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tiiivsH~~~~~~~~~d~ 221 (257)
T PRK10619 170 EPEVLLFDE----------PTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGFARHVSSH 221 (257)
T ss_pred CCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCE
Confidence 999999999 9999999999999999998753 367999999999887644433
No 208
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.3e-17 Score=173.45 Aligned_cols=154 Identities=20% Similarity=0.181 Sum_probs=118.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------------ch
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------TS 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------~~ 244 (741)
..+++++++.+.+| ++|+||||||||||+++|+|.+.+..+++...... +.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 97 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence 45899999999999 88999999999999999999998877766432100 01
Q ss_pred hhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++.+... ....+++..+++.+++.......+..+|||+.+++ .+++|+..+|++|++|| |
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv--~laraL~~~p~llllDE----------P 165 (274)
T PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV--AIAGVLAMDPDVIVLDE----------P 165 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC----------C
Confidence 111211110 11223455666777776666778899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++++|+..+..+.+++..+.. .+.+||++||+++.+...+.
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~----~g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHN----QGKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999988853 26799999999987754443
No 209
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.68 E-value=5.6e-17 Score=162.34 Aligned_cols=155 Identities=18% Similarity=0.140 Sum_probs=115.6
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
+.+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 8 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87 (198)
T ss_pred EEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccC
Confidence 3344566899999999999 8899999999999999999998877666533210
Q ss_pred cchhhHHHHHhhh--hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 242 VTSKEDMAILMGN--QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
.+..+++...... ....++..+++.+++.......+..+|||+.+++ ++++|+..+|.+|++|| |+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE----------Pt 155 (198)
T TIGR01189 88 LSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL--ALARLWLSRAPLWILDE----------PT 155 (198)
T ss_pred CcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH--HHHHHHhcCCCEEEEeC----------CC
Confidence 0111112111110 0012344556666666555677899999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+++|...+..+.+++..+.. .+.++|++||++..+.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~----~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLA----RGGIVLLTTHQDLGLV 191 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHh----CCCEEEEEEccccccc
Confidence 99999999999999988743 3458999999987653
No 210
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.68 E-value=1.9e-17 Score=173.82 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=117.1
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------------- 241 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------------- 241 (741)
+....++++++|++++| ++|+||||||||||+++|+|.+.+..+++.....
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 44456889999999999 7899999999999999999999877666543210
Q ss_pred --cchhhHHHHHhhh-------hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 242 --VTSKEDMAILMGN-------QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 242 --~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
.+..+++...... ....++...++.+++.......+..+|||+++++ .|++|+..+|.+|++||
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv--~laral~~~p~lllLDE----- 169 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA--ALARAIALEPDLIMFDE----- 169 (269)
T ss_pred CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC-----
Confidence 0011122111000 0112333456666776666777899999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 170 -----Pt~~LD~~~~~~l~~~l~~~~~---~~g~tiiivsH~~~~~~~~~ 211 (269)
T PRK11831 170 -----PFVGQDPITMGVLVKLISELNS---ALGVTCVVVSHDVPEVLSIA 211 (269)
T ss_pred -----CCccCCHHHHHHHHHHHHHHHH---hcCcEEEEEecCHHHHHHhh
Confidence 9999999999999999988753 23579999999988765433
No 211
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=2.7e-17 Score=160.96 Aligned_cols=164 Identities=17% Similarity=0.222 Sum_probs=136.7
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------- 241 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------- 241 (741)
+.++..|+...++.+++|.++.| ..|+||||+||||..|+|.|.+.++.+++++..-
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 34667788999999999999999 6799999999999999999999999888876431
Q ss_pred -cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+.+.++. ..+...++..+++.+.+.....+.+.++|-|.+|++ .|-.+..++|.+++|||
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI--QfisaviHePeLlILDE------- 156 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI--QFISAVIHEPELLILDE------- 156 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH--HHHHHHhcCCCEEEecC-------
Confidence 11112222221 235567788899999998888999999999999999 88899999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|.+++||...+.|.+.+.++.. .+.+||++||+++.+...|.+
T Consensus 157 ---PFSGLDPVN~elLk~~I~~lk~----~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 157 ---PFSGLDPVNVELLKDAIFELKE----EGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred ---CccCCChhhHHHHHHHHHHHHh----cCCEEEEecchHHHHHHHhhh
Confidence 9999999999999999988875 678999999999988766654
No 212
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.9e-17 Score=172.68 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=117.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------c----
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------T---- 243 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------~---- 243 (741)
.+.+.++.++++++|++.+| ++|+||||||||||+++|+|.+.+..|++...... .
T Consensus 8 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 87 (271)
T PRK13638 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87 (271)
T ss_pred EEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChh
Confidence 34455566899999999999 78999999999999999999998877665432100 0
Q ss_pred -------hhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 244 -------SKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 244 -------~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
..+++.... + .....++..+++.+++.......+..+|||+++++ .|++|+..+|+||++||
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~laraL~~~p~lllLDE--- 162 (271)
T PRK13638 88 QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV--AIAGALVLQARYLLLDE--- 162 (271)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHH--HHHHHHHcCCCEEEEeC---
Confidence 000111100 0 01112233455555665555677889999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+
T Consensus 163 -------Pt~~LD~~~~~~l~~~l~~~~~----~g~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 163 -------PTAGLDPAGRTQMIAIIRRIVA----QGNHVIISSHDIDLIYEIS 203 (271)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998753 2568999999998775433
No 213
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.9e-17 Score=171.26 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=118.0
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..+++++++++.+| ++|+||||+|||||+++|+|.+.+..|++......
T Consensus 13 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (255)
T PRK11300 13 MRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLF 92 (255)
T ss_pred EEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccC
Confidence 3344556899999999999 78999999999999999999988877655432110
Q ss_pred ---chhhHHHHHhh---------------------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc
Q psy11254 243 ---TSKEDMAILMG---------------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH 298 (741)
Q Consensus 243 ---~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~ 298 (741)
+..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+..
T Consensus 93 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~~ 170 (255)
T PRK11300 93 REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL--EIARCMVT 170 (255)
T ss_pred CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH--HHHHHHhc
Confidence 00111111000 00011233445556666666778889999999999 99999999
Q ss_pred CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 299 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 299 ~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|++|++|| |++++|+..+..+.++|..+.. ..+.+||++||+++.+...+.
T Consensus 171 ~p~llllDE----------Pt~~LD~~~~~~l~~~L~~~~~---~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 171 QPEILMLDE----------PAAGLNPKETKELDELIAELRN---EHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred CCCEEEEcC----------CccCCCHHHHHHHHHHHHHHHh---hcCCEEEEEeCCHHHHHHhCC
Confidence 999999999 9999999999999999988753 235799999999987754443
No 214
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.67 E-value=2.4e-17 Score=171.47 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=117.7
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++.+| ++|+||||||||||+|+|+|.+.+..+++......
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (252)
T TIGR03005 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN 87 (252)
T ss_pred EEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhh
Confidence 3344556899999999999 78999999999999999999998877765432110
Q ss_pred ---------------chhhHHHHHh-------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 243 ---------------TSKEDMAILM-------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 243 ---------------~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
+..+++.... ......++..+++.+++.......+..+|||+.+++ ++++|+..+|
T Consensus 88 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~~~p 165 (252)
T TIGR03005 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV--AIARALAMRP 165 (252)
T ss_pred CeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH--HHHHHHHcCC
Confidence 0011111100 011122344556666666555677889999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++|++|| |++++|+..+..+.+++.++.. ..+.++|++||+++.+..
T Consensus 166 ~llllDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 166 KVMLFDE----------VTSALDPELVGEVLNVIRRLAS---EHDLTMLLVTHEMGFARE 212 (252)
T ss_pred CEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEeCCHHHHHH
Confidence 9999999 9999999999999999988753 236799999999987654
No 215
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.2e-17 Score=173.02 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=116.3
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++.....
T Consensus 19 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (265)
T PRK10575 19 FRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98 (265)
T ss_pred EEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCC
Confidence 3344456899999999999 7899999999999999999998877666543210
Q ss_pred -cchhhHHHHHhh----------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 242 -VTSKEDMAILMG----------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 242 -~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
....+++..... .....++..+++.+++.......+.++|||+.+++ .|++|+..+|+||++||
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~p~lllLDE--- 173 (265)
T PRK10575 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRA--WIAMLVAQDSRCLLLDE--- 173 (265)
T ss_pred CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC---
Confidence 001111111000 01122344455666665555667889999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..++.+.+++.++.. ..+.+||++||+++.+..
T Consensus 174 -------Pt~~LD~~~~~~~~~~l~~l~~---~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 174 -------PTSALDIAHQVDVLALVHRLSQ---ERGLTVIAVLHDINMAAR 213 (265)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235689999999987753
No 216
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.67 E-value=3.9e-17 Score=167.18 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=115.6
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc-----CCCceeeeccccc-----------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSLFV----------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l-----~~~~~~v~~~~~~----------------- 242 (741)
+.+.+....++++++|++.+| ++|+||||||||||+++|+|.+ .+..+++......
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 85 (227)
T cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGM 85 (227)
T ss_pred EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEE
Confidence 344455556899999999999 7899999999999999999999 7776665432110
Q ss_pred ----------chhhHHHHHh---h----hhhhhcccccccccccCCCccch--hhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 ----------TSKEDMAILM---G----NQLKRRSTHHLEKTYFPFYSSAI--VDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 ----------~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~~~~--~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
+..+++.... + .....++..+++.+++....... +..+|||+++++ ++++|+..+|.+|
T Consensus 86 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv--~la~al~~~p~ll 163 (227)
T cd03260 86 VFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL--CLARALANEPEVL 163 (227)
T ss_pred EecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH--HHHHHHhcCCCEE
Confidence 0011111100 0 00123344556666665443444 589999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++|| |++++|+..+..+.+++.++.. . .+||++||+++.+..
T Consensus 164 llDE----------Pt~~LD~~~~~~l~~~l~~~~~----~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 164 LLDE----------PTSALDPISTAKIEELIAELKK----E-YTIVIVTHNMQQAAR 205 (227)
T ss_pred EEeC----------CCccCCHHHHHHHHHHHHHHhh----C-cEEEEEeccHHHHHH
Confidence 9999 9999999999999999998754 2 689999999987653
No 217
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.67 E-value=6.1e-17 Score=165.87 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=113.8
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 4789999999999 88999999999999999999988876665432100
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++...++.+++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl--~la~al~~~p~llllDE--------- 172 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV--ALARAFNGRPDVLFADE--------- 172 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 0111111100 011123445566666766555677889999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+.
T Consensus 173 -Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 173 -PTGNLDRQTGDKIADLLFSLNR---EHGTTLILVTHDLQLAA 211 (228)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHH
Confidence 9999999999999999988743 23568999999988653
No 218
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.5e-17 Score=171.59 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=118.1
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.++.++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 9 TVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred EEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 34455567899999999999 78999999999999999999988877665432100
Q ss_pred ---chhhHHHHHh-------h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 243 ---TSKEDMAILM-------G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 243 ---~~~~~~~~~~-------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+..+++.... + .....++..+++.+++.......+..+|||+.+++ ++++|+..+|++|++||
T Consensus 89 ~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE-- 164 (255)
T PRK11231 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRA--FLAMVLAQDTPVVLLDE-- 164 (255)
T ss_pred CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC--
Confidence 0111111100 0 01112334445555665555677889999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++..+.. .+.++|++||+++.+...+.
T Consensus 165 --------P~~~LD~~~~~~l~~~l~~l~~----~~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 165 --------PTTYLDINHQVELMRLMRELNT----QGKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred --------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHhcC
Confidence 9999999999999999988753 35689999999987764443
No 219
>KOG0742|consensus
Probab=99.67 E-value=9.2e-16 Score=159.21 Aligned_cols=176 Identities=27% Similarity=0.479 Sum_probs=127.0
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchH
Q psy11254 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES 284 (741)
Q Consensus 205 ~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 284 (741)
-+++++|||||||||+++|-||...|.++--+++... .-+-.+.
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV------------------------------------APlG~qa 427 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV------------------------------------APLGAQA 427 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc------------------------------------cccchHH
Confidence 3458999999999999999999998887765554211 1111233
Q ss_pred HHHHHHHHHHHHhcCC-eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 285 ARLIREMFNYARNHQP-CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 285 ~~~v~~~~~~A~~~~P-~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
-.++.++|+.|...+- -+|||||+|+++..|. .+......+..|..+|-.-- +...++.++++||+|..+|.++.
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRn--ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN--KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhc--hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHH
Confidence 4567788999887554 4668999999998884 34555556667777764322 33467889999999999999998
Q ss_pred CCCccceeeecCCCCHHHHHhccccchhccCCCccc-----------------------CCCC----HHHHHHhcCCCCH
Q psy11254 364 RPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-----------------------GEID----YEAVVKLSDSFNG 416 (741)
Q Consensus 364 r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~-----------------------~~~~----~~~la~~t~g~~g 416 (741)
. |+|..++||+|.+++|..+ +..+...+... ...+ ..+.++.|+||+|
T Consensus 504 D--Ride~veFpLPGeEERfkl---l~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 504 D--RIDEVVEFPLPGEEERFKL---LNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred h--hhhheeecCCCChHHHHHH---HHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 8 9999999999999999876 33222111100 1122 2567889999999
Q ss_pred HHHHHHHHH
Q psy11254 417 ADLRNVCTE 425 (741)
Q Consensus 417 adi~~l~~~ 425 (741)
++|..++..
T Consensus 579 REiakLva~ 587 (630)
T KOG0742|consen 579 REIAKLVAS 587 (630)
T ss_pred HHHHHHHHH
Confidence 999988754
No 220
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=1.8e-16 Score=146.57 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=123.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------hhhHHHHHhhh-----
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------SKEDMAILMGN----- 254 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------~~~~~~~~~~~----- 254 (741)
+.-....++++++|.+.+| +++.||+|||||||+|++|....++.+.+....... ....+++..+.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3456778999999999999 889999999999999999999999988876432211 11123332211
Q ss_pred -----------------hhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 255 -----------------QLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 255 -----------------~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
.........+..++++.. .+..+..+|||.+|++ ++.+-+..-|+||+|||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri--AliR~Lq~~P~ILLLDE--------- 159 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI--ALIRNLQFMPKILLLDE--------- 159 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH--HHHHHhhcCCceEEecC---------
Confidence 011223344555555433 4667889999999998 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC-CCccccCCCccceeeecCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT-LDPALLRPGRLDRKIEIPL 376 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~-ld~al~r~gr~d~~i~~~~ 376 (741)
+|+.+|+...+.+.+++-.+-. ..++.++++||+++. +. .+|+.|.+.+
T Consensus 160 -~TsALD~~nkr~ie~mi~~~v~---~q~vAv~WiTHd~dqa~r-------ha~k~itl~~ 209 (223)
T COG4619 160 -ITSALDESNKRNIEEMIHRYVR---EQNVAVLWITHDKDQAIR-------HADKVITLQP 209 (223)
T ss_pred -chhhcChhhHHHHHHHHHHHhh---hhceEEEEEecChHHHhh-------hhheEEEecc
Confidence 9999999999999999877654 478999999999876 32 5666666643
No 221
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=9.1e-17 Score=160.42 Aligned_cols=153 Identities=13% Similarity=0.111 Sum_probs=112.0
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------chhh
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------TSKE 246 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------~~~~ 246 (741)
+..+.++. ++|++++| ++|+||||+|||||+++|+|.+.+..+++...... +..+
T Consensus 11 ~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 11 IEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred ECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHH
Confidence 33344555 89999998 78999999999999999999988877766532110 0111
Q ss_pred HHHHHhhh-hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 247 DMAILMGN-QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 247 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
++...... ....++...++.+++.......+..+|||+++++ .+++|+..+|.++++|| |++++|+.
T Consensus 90 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl--~la~al~~~p~~lllDE----------P~~~LD~~ 157 (195)
T PRK13541 90 NLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIV--AIARLIACQSDLWLLDE----------VETNLSKE 157 (195)
T ss_pred HHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CcccCCHH
Confidence 12111100 0112334445555665555677889999999999 99999999999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
.+..+.+++..+.. .+.++|++||+++.+..
T Consensus 158 ~~~~l~~~l~~~~~----~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 158 NRDLLNNLIVMKAN----SGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHh----CCCEEEEEeCCccccch
Confidence 99999999975432 35689999999988753
No 222
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.67 E-value=3.4e-17 Score=167.94 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=115.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 7 NVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred EEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 34444556899999999999 88999999999999999999998877766532110
Q ss_pred ----chhhHHHHHhhh---hhhhcccccccccc-cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 ----TSKEDMAILMGN---QLKRRSTHHLEKTY-FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 ----~~~~~~~~~~~~---~~~~~~~~~l~~~~-~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++...... .........++.++ +.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~illlDE------- 157 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQL--AIARALVTRPKLLLLDE------- 157 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEecC-------
Confidence 000111110000 00111122333333 33344667888999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++.+...+
T Consensus 158 ---Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~~~~ 199 (230)
T TIGR03410 158 ---PTEGIQPSIIKDIGRVIRRLRA---EGGMAILLVEQYLDFARELA 199 (230)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 23579999999998775433
No 223
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=4.5e-17 Score=172.36 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=118.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------c
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-----------------------------T 243 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-----------------------------~ 243 (741)
.++++++|++.+| ++|+||||||||||+++|+|.+.+..|++...... +
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 5899999999999 88999999999999999999998876665321100 0
Q ss_pred hhhHHHHHh------hhhhhhcccccccccccC--CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 244 SKEDMAILM------GNQLKRRSTHHLEKTYFP--FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
..+++.+.. ......++..+++.+++. ......+..+|||+++++ .|++|+..+|.+|++||
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv--~iAraL~~~P~llllDE-------- 170 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRV--AIAGVVAMEPKILILDE-------- 170 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 111121111 011223456677777775 446777899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++++...+.
T Consensus 171 --Pt~gLD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 171 --PTAGLDPKGRDEILNKIKELHK---EYNMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred --CccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999998854 236799999999887654333
No 224
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.66 E-value=8e-17 Score=164.56 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=116.7
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.+..++++++|++++| ++|+||||||||||+++|+|...+..+++......
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 93 (225)
T PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLF 93 (225)
T ss_pred EEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccc
Confidence 34444556899999999999 78999999999999999999988777766432110
Q ss_pred --chhhHHHHHh---hh-hhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 --TSKEDMAILM---GN-QLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 --~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++.... +. ....++...++.+++. ......+..+|||+.+++ .|++|+..+|+++++||
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE-------- 163 (225)
T PRK10247 94 GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRI--SLIRNLQFMPKVLLLDE-------- 163 (225)
T ss_pred cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 0011121110 00 0112344566666664 345677889999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++.+.
T Consensus 164 --Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 164 --ITSALDESNKHNVNEIIHRYVR---EQNIAVLWVTHDKDEIN 202 (225)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEECChHHHH
Confidence 9999999999999999988753 23568999999998774
No 225
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.4e-17 Score=170.53 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=117.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------------ch
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------TS 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------~~ 244 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++...... +.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 35899999999999 78999999999999999999998887766432110 01
Q ss_pred hhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++.... ......++..+++.+++.......+..+|||+.+++ .|++|+..+|.+|++|| |
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv--~laral~~~p~lllLDE----------P 167 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV--AIAGVLALQPDIIILDE----------A 167 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------C
Confidence 11111110 011123455666777777667788899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++++|+..+..+.+++..+.. ..+.+||++||+++.+.
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~---~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKE---QKGITVLSITHDLDEAA 205 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHH
Confidence 999999999999999998864 23679999999988764
No 226
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.7e-17 Score=172.30 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=118.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------------ch
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------TS 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------~~ 244 (741)
..++++++|++++| ++|+||||+|||||+++|+|.+.++.|++...... +.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 35899999999999 78999999999999999999998887766432110 00
Q ss_pred hhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++..... .....++..+++.+++.......+..+|||+++++ .+++|+..+|++|++|| |
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl--~laraL~~~p~llilDE----------P 164 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV--AIAGVIAMEPQVLVLDE----------P 164 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------C
Confidence 111111000 01122344556666776666778899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++++|+..+..+.+++.++.. ..+.+||++||+++.+...+.|
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~---~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPE---TYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHHhCCE
Confidence 999999999999999988754 2357999999999987654444
No 227
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6e-17 Score=170.34 Aligned_cols=150 Identities=18% Similarity=0.230 Sum_probs=115.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------T 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------~ 243 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++...... +
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 45899999999999 78999999999999999999988876655332110 0
Q ss_pred hhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++..... ....+++..+++.+++.......+..+|||+++++ .|++|+..+|.||++||
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~~~p~lllLDE---------- 162 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCV--ALAGILTMEPECLIFDE---------- 162 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------
Confidence 0111111100 11223445556667776666778899999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+.
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~----~g~til~~tH~~~~~~ 200 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHE----KGKTIVYITHNLEELH 200 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHh
Confidence 9999999999999999988753 3679999999998773
No 228
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.66 E-value=3.9e-17 Score=170.32 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=118.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+.++.++++++|++++| ++|+||||||||||+++|+|.+.+..|++......
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (258)
T PRK13548 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLS 88 (258)
T ss_pred EEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCC
Confidence 33445566899999999999 78999999999999999999988876665432110
Q ss_pred ---chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh------cCCeEEEecc
Q psy11254 243 ---TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN------HQPCIIFMDE 307 (741)
Q Consensus 243 ---~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~------~~P~ILllDE 307 (741)
+..+++..... .....++..+++.+++.......+..+|||+++++ .+++|+. .+|.+|++||
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv--~la~al~~~~~~~~~p~lllLDE 166 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV--QLARVLAQLWEPDGPPRWLLLDE 166 (258)
T ss_pred CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHhcccccCCCCCEEEEeC
Confidence 00111111100 01122344556666776666778899999999999 9999999 5899999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 167 ----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~~~~ 208 (258)
T PRK13548 167 ----------PTSALDLAHQHHVLRLARQLAH---ERGLAVIVVLHDLNLAARYA 208 (258)
T ss_pred ----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHhc
Confidence 9999999999999999988752 13568999999998775433
No 229
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-17 Score=169.11 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=116.6
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 11 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 11 YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE 90 (241)
T ss_pred EEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch
Confidence 3344556889999999999 78999999999999999999998877766432110
Q ss_pred -chhhHHHHHh--hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 243 -TSKEDMAILM--GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 243 -~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
...+++.... ......++..+++.+++. ......+..+|||+.+++ ++++|+..+|.+|++|| |
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE----------P 158 (241)
T PRK14250 91 GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV--SIARTLANNPEVLLLDE----------P 158 (241)
T ss_pred hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------C
Confidence 0000111000 000112334455666664 334567788999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++++|+..+..+.+++..+.. ..+.+||++||+++.+...+.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~---~~g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKN---KMNLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHHHHHhCC
Confidence 999999999999999988753 235689999999987764443
No 230
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.66 E-value=7.4e-17 Score=175.38 Aligned_cols=160 Identities=20% Similarity=0.181 Sum_probs=124.2
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
.+...++....+++++|++++| ++|+||||||||||+|+|+|.+.++.|++.....
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3344466677889999999999 7899999999999999999999888776644320
Q ss_pred ------------cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 242 ------------VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 242 ------------~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
.+..+++.+.. + .....++..+++.+++.......+.++|||+++++ .+++|+..+|.||
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV--~LARALa~~P~IL 186 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV--GLARAFAMDADIL 186 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEE
Confidence 01112222211 0 11234456677888887777888999999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++|| |++++|+..+..+.+++.++.. ..+.++|++||+++++..
T Consensus 187 LlDE----------Pts~LD~~~r~~l~~~L~~l~~---~~~~TII~iTHdl~e~~~ 230 (382)
T TIGR03415 187 LMDE----------PFSALDPLIRTQLQDELLELQA---KLNKTIIFVSHDLDEALK 230 (382)
T ss_pred EEEC----------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999 9999999999999999988754 236799999999987643
No 231
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=6.4e-17 Score=166.11 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+....+++++++++.+| ++|+||||+|||||+++|+|.+.+..+.+.....
T Consensus 7 ~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 7 SKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 34444556899999999999 8899999999999999999999887776543210
Q ss_pred cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
....+++.... ......++..+++.+++.......+..+|||+.+++ ++++|+..+|+++++||
T Consensus 87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl--~laral~~~p~llllDE-------- 156 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRV--AIARALVNEPKVLLLDE-------- 156 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 01111221111 111123444566667776666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++.+...+.+
T Consensus 157 --P~~gLD~~~~~~l~~~l~~~~~---~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 157 --PLGALDLKLRKDMQLELKRLQK---ELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHhcCE
Confidence 9999999999999999988753 2357999999999877544433
No 232
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.3e-17 Score=161.14 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=107.6
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccccc
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKT 267 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (741)
.+..+.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++......... ... ......+.+....+..
T Consensus 9 ~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~-~~~~~~~~i~~~~q~~ 85 (178)
T cd03229 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD--LED-ELPPLRRRIGMVFQDF 85 (178)
T ss_pred EECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--cch-hHHHHhhcEEEEecCC
Confidence 344456899999999999 77999999999999999999998888877643211000 000 0001111121122211
Q ss_pred ccCC--Cccchhh-hhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCC
Q psy11254 268 YFPF--YSSAIVD-KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 344 (741)
Q Consensus 268 ~~~~--~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~ 344 (741)
.+.. ...+.+. .+|||+.+++ .+++|+..+|.++++|| |++++|+..+..+.+++.++.. ..
T Consensus 86 ~~~~~~t~~~~l~~~lS~G~~qr~--~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~~---~~ 150 (178)
T cd03229 86 ALFPHLTVLENIALGLSGGQQQRV--ALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQA---QL 150 (178)
T ss_pred ccCCCCCHHHheeecCCHHHHHHH--HHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hc
Confidence 1110 1111111 1899999999 99999999999999999 9999999999999999998764 22
Q ss_pred CeEEEEeeCCCCCCCccc
Q psy11254 345 QVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 345 ~v~vI~at~~~~~ld~al 362 (741)
+.++|++||+++.++..+
T Consensus 151 ~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 151 GITVVLVTHDLDEAARLA 168 (178)
T ss_pred CCEEEEEeCCHHHHHHhc
Confidence 568999999998776433
No 233
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.6e-17 Score=171.38 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=118.8
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 15 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 94 (265)
T PRK10253 15 LGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG 94 (265)
T ss_pred EEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC
Confidence 3444556899999999999 88999999999999999999998877766532110
Q ss_pred --chhhHHHHH-hh---------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 --TSKEDMAIL-MG---------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 --~~~~~~~~~-~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
...+.+... .. .....++..+++.+++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 95 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~laral~~~p~llllDE--- 169 (265)
T PRK10253 95 DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA--WIAMVLAQETAIMLLDE--- 169 (265)
T ss_pred CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHH--HHHHHHhcCCCEEEEeC---
Confidence 001111110 00 01112334455556665555677899999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+.+
T Consensus 170 -------Pt~gLD~~~~~~l~~~L~~l~~---~~~~tiii~tH~~~~~~~~~d~ 213 (265)
T PRK10253 170 -------PTTWLDISHQIDLLELLSELNR---EKGYTLAAVLHDLNQACRYASH 213 (265)
T ss_pred -------ccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999999988753 2356899999999877544433
No 234
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.8e-17 Score=164.54 Aligned_cols=149 Identities=13% Similarity=0.243 Sum_probs=112.2
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHHHHh
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMAILM 252 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~~~~ 252 (741)
+++|++.+| ++|+||||+|||||+++|+|.+.+..+++..... .+..+++....
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 778888898 7899999999999999999999887766543210 01111221111
Q ss_pred h------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 253 G------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 253 ~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
. .....++..+++.+++.......+..+|||+++++ .+++|+..+|.+|++|| |++++|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~ia~al~~~p~llllDE----------P~~~LD~~~ 163 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV--ALARVLVRDKPVLLLDE----------PFAALDPAL 163 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CcccCCHHH
Confidence 0 01122345556666766556677889999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+..+.+++.++.. ..+.++|++||+++.+...+
T Consensus 164 ~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~~~~ 196 (211)
T cd03298 164 RAEMLDLVLDLHA---ETKMTVLMVTHQPEDAKRLA 196 (211)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEecCHHHHHhhh
Confidence 9999999988753 23578999999998876433
No 235
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.66 E-value=9.3e-17 Score=157.14 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=103.9
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCC
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (741)
..+++++++.+++| ++|+||||+|||||+++|+|.+.+..+.+........ ........+++....+...+..
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~~~~~~i~~~~q~~~~~~ 89 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-----QWDPNELGDHVGYLPQDDELFS 89 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-----cCCHHHHHhheEEECCCCcccc
Confidence 35899999999999 7899999999999999999999888887764321110 0000111112222222211111
Q ss_pred Cccchhhh-hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 272 YSSAIVDK-YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 272 ~~~~~~~~-~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
...... +|||+.+++ .+++|+..+|++|++|| |++++|+..+..+.+++..+.. .+.++|+
T Consensus 90 --~tv~~~lLS~G~~qrv--~la~al~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~ 151 (173)
T cd03246 90 --GSIAENILSGGQRQRL--GLARALYGNPRILVLDE----------PNSHLDVEGERALNQAIAALKA----AGATRIV 151 (173)
T ss_pred --CcHHHHCcCHHHHHHH--HHHHHHhcCCCEEEEEC----------CccccCHHHHHHHHHHHHHHHh----CCCEEEE
Confidence 111111 899999999 99999999999999999 9999999999999999988753 3568999
Q ss_pred eeCCCCCCC
Q psy11254 351 ATNRPDTLD 359 (741)
Q Consensus 351 at~~~~~ld 359 (741)
+||+++.+.
T Consensus 152 ~sh~~~~~~ 160 (173)
T cd03246 152 IAHRPETLA 160 (173)
T ss_pred EeCCHHHHH
Confidence 999987663
No 236
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-16 Score=168.15 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=113.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------------ch
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------TS 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------~~ 244 (741)
+.+++++++++.+| ++|+||||+|||||+++|+|.+.+..|++...... +.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 46899999999999 78999999999999999999998776655321100 01
Q ss_pred hhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 245 KEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 245 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+++..... .....++..+++.+++.......+..+|||+.+++ .|++|+..+|++|++|| |
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~lllLDE----------P 169 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV--AIASVLALNPEIIIFDE----------S 169 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------C
Confidence 111111000 01112334455666666556777899999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++++|+..+..+.+++.++.. .++.++|++||+++.+.
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRK---TRKKTLISITHDMDEAI 207 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCcEEEEEEechhHHh
Confidence 999999999999999988753 23469999999998764
No 237
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.1e-17 Score=175.03 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=114.4
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------cchhh
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------VTSKE 246 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------~~~~~ 246 (741)
+++|++++| ++|+||||||||||+|+|+|.+.++.+++..... .+..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 688888888 7899999999999999999999887776643210 01111
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
++.+........++..+++.+++.......+..+|||+++++ ++++|+..+|++|+||| |++++|+..
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRv--alaraL~~~p~llLLDE----------Pts~LD~~~ 163 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRV--AIGRALLTAPELLLMDE----------PLASLDLPR 163 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEcC----------CcccCCHHH
Confidence 222111111223455667777777667788899999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+..+.+++..+.. ..+.++|++||+++++...+
T Consensus 164 ~~~l~~~L~~l~~---~~g~tii~vTHd~~~~~~~~ 196 (352)
T PRK11144 164 KRELLPYLERLAR---EINIPILYVSHSLDEILRLA 196 (352)
T ss_pred HHHHHHHHHHHHH---hcCCeEEEEecCHHHHHHhC
Confidence 9999999988754 23678999999998765433
No 238
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=1.6e-16 Score=178.57 Aligned_cols=152 Identities=19% Similarity=0.221 Sum_probs=119.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----c-hh-------hHHHHHhh---hh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-----T-SK-------EDMAILMG---NQ 255 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-----~-~~-------~~~~~~~~---~~ 255 (741)
+.++++++|.+.+| +.|+||||+|||||+|.|+|.+++..+.+.....+ . .. .-+..+.. ..
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 57899999999999 99999999999999999999999887766532110 0 00 00111111 11
Q ss_pred hhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 334 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL 334 (741)
....+..++..++|... ....+..+|||++.|+ .|++.+..+|.+|+||| ||||+|.++...|.+.|
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl--~La~ll~~~pNvLiLDE----------PTNhLDi~s~~aLe~aL 482 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL--LLAKLLLQPPNLLLLDE----------PTNHLDIESLEALEEAL 482 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH--HHHHHhccCCCEEEEcC----------CCccCCHHHHHHHHHHH
Confidence 13445556666666543 4678899999999988 99999999999999999 99999999999999999
Q ss_pred HhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 335 NQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 335 ~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
..++| +||++|||+++++..+.+
T Consensus 483 ~~f~G-------tvl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 483 LDFEG-------TVLLVSHDRYFLDRVATR 505 (530)
T ss_pred HhCCC-------eEEEEeCCHHHHHhhcce
Confidence 99998 899999999999966654
No 239
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.1e-16 Score=156.20 Aligned_cols=141 Identities=19% Similarity=0.278 Sum_probs=102.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCC
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 272 (741)
.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++...... +.........+.+....+...+..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~-----~~~~~~~~~~~~i~~~~~~~~~~~- 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-----LRDLDLESLRKNIAYVPQDPFLFS- 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE-----hhhcCHHHHHhhEEEEcCCchhcc-
Confidence 5889999999999 78999999999999999999998888877543211 111111111111111111111110
Q ss_pred ccchhhh-hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEe
Q psy11254 273 SSAIVDK-YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 351 (741)
Q Consensus 273 ~~~~~~~-~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~a 351 (741)
...... +|||+++++ .+++|+..+|++|++|| |++++|+..+..+.+++.++.. +.++|++
T Consensus 90 -~t~~e~lLS~G~~~rl--~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~~~-----~~tii~~ 151 (171)
T cd03228 90 -GTIRENILSGGQRQRI--AIARALLRDPPILILDE----------ATSALDPETEALILEALRALAK-----GKTVIVI 151 (171)
T ss_pred -chHHHHhhCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHhcC-----CCEEEEE
Confidence 011111 899999999 99999999999999999 9999999999999999988742 3689999
Q ss_pred eCCCCCCC
Q psy11254 352 TNRPDTLD 359 (741)
Q Consensus 352 t~~~~~ld 359 (741)
||+++.+.
T Consensus 152 sh~~~~~~ 159 (171)
T cd03228 152 AHRLSTIR 159 (171)
T ss_pred ecCHHHHH
Confidence 99998875
No 240
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.65 E-value=1.5e-16 Score=147.46 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=121.7
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------------
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------------- 241 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------------- 241 (741)
..-.+++++++.+.+| +.|+||+|+|||||+-.+||.-.++.++|.....
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 3446788999999998 8899999999999999999998888877764211
Q ss_pred --cchhhHHH---HHhh---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 242 --VTSKEDMA---ILMG---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 242 --~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.+..+++. .+.+ ......+..+++.+|+......++.++|||.+|+| ++++|+...|+|||-||
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV--AiARAfa~~P~vLfADE------ 172 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV--ALARAFAGRPDVLFADE------ 172 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH--HHHHHhcCCCCEEeccC------
Confidence 01111111 1222 12334567788889999888999999999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
||.++|.++-+.+.+++-.+.. ..+.++|++|||+...
T Consensus 173 ----PTGNLD~~Tg~~iaDLlF~lnr---e~G~TlVlVTHD~~LA 210 (228)
T COG4181 173 ----PTGNLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQLA 210 (228)
T ss_pred ----CCCCcchhHHHHHHHHHHHHhh---hcCceEEEEeCCHHHH
Confidence 9999999999999999987765 4678999999987654
No 241
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-16 Score=175.42 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------------- 241 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------------- 241 (741)
++....+++++|++++| ++|+||||||||||+|+|+|.+.+..+++.....
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34445789999999999 7899999999999999999999887776543210
Q ss_pred ---cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 242 ---VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 242 ---~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
.+..+++.+... .....++..+++.+++.......+..+|||++|++ .+++|+..+|.||++||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv--~LArAL~~~P~iLLLDE----- 190 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV--GLARALAINPDILLMDE----- 190 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH--HHHHHHhcCCCEEEEEC-----
Confidence 011122222111 11223455677778887777788899999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++++..
T Consensus 191 -----Pts~LD~~~r~~l~~~L~~l~~---~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 191 -----AFSALDPLIRTEMQDELVKLQA---KHQRTIVFISHDLDEAMR 230 (400)
T ss_pred -----CCccCCHHHHHHHHHHHHHHHH---HCCCeEEEEECCHHHHHH
Confidence 9999999999999999988753 235689999999887643
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.65 E-value=1.4e-16 Score=156.67 Aligned_cols=142 Identities=15% Similarity=0.235 Sum_probs=105.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCC-
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF- 271 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 271 (741)
.+++++++++++| ++|+||||+|||||+++|+|...+..+++..... ++... .....+.+....+...+..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~-----~~~~~-~~~~~~~i~~~~q~~~~~~~ 89 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV-----PVSDL-EKALSSLISVLNQRPYLFDT 89 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCE-----EHHHH-HHHHHhhEEEEccCCeeecc
Confidence 5899999999999 7899999999999999999999888887754321 11111 1111122222222211110
Q ss_pred -CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 272 -YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 272 -~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
....++..+|||+.+++ .+++|+..+|.+|++|| |++++|...+..+.+++..+.. +.++|+
T Consensus 90 tv~~~i~~~LS~G~~qrv--~laral~~~p~~lllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tii~ 152 (178)
T cd03247 90 TLRNNLGRRFSGGERQRL--ALARILLQDAPIVLLDE----------PTVGLDPITERQLLSLIFEVLK-----DKTLIW 152 (178)
T ss_pred cHHHhhcccCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHcC-----CCEEEE
Confidence 11222678999999999 99999999999999999 9999999999999999988742 468999
Q ss_pred eeCCCCCCC
Q psy11254 351 ATNRPDTLD 359 (741)
Q Consensus 351 at~~~~~ld 359 (741)
+||+++.++
T Consensus 153 ~sh~~~~~~ 161 (178)
T cd03247 153 ITHHLTGIE 161 (178)
T ss_pred EecCHHHHH
Confidence 999998774
No 243
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-16 Score=169.43 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=117.8
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 4889999999999 88999999999999999999998877765432110
Q ss_pred -chhhHHHHHhh------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 -TSKEDMAILMG------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 -~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++.+... .....++..+++.+++. ......+..+|||+++++ ++++|+..+|+||+|||
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv--aiA~aL~~~p~illLDE------- 170 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV--AIAGILAMEPEVLVLDE------- 170 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH--HHHHHHHhCCCEEEEEC-------
Confidence 01112221111 12233455666667774 345678899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..++.+.+++..+.. .+.+||++||+++.+...+.|
T Consensus 171 ---Pt~gLD~~~~~~l~~~l~~l~~----~g~til~vtHd~~~~~~~~dr 213 (288)
T PRK13643 171 ---PTAGLDPKARIEMMQLFESIHQ----SGQTVVLVTHLMDDVADYADY 213 (288)
T ss_pred ---CccCCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999988763 367999999999877644443
No 244
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=7.6e-17 Score=159.17 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=133.8
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
.+...|+.-..+++++|++.+| +.|+||||+||||+.++|.|.+.|+.+++.....
T Consensus 9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence 3456677778899999999999 7899999999999999999999998888764311
Q ss_pred -----cchhhHHHHH------------------hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc
Q psy11254 242 -----VTSKEDMAIL------------------MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH 298 (741)
Q Consensus 242 -----~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~ 298 (741)
.+..+++... ...+...++..+++.+++..........+++|.++++ -+++|++.
T Consensus 89 rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L--EIArALa~ 166 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL--EIARALAT 166 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH--HHHHHHhc
Confidence 1111222211 1123456677888999999999999999999999999 99999999
Q ss_pred CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 299 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 299 ~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|.+|+||| |.+++.+.....+.+++..+.. ..+++|+++.||++.+-..+.|
T Consensus 167 ~P~lLLLDE----------PaAGln~~e~~~l~~~i~~i~~---~~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 167 QPKLLLLDE----------PAAGLNPEETEELAELIRELRD---RGGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred CCCEEEecC----------ccCCCCHHHHHHHHHHHHHHHh---cCCcEEEEEEeccHHHhhhccE
Confidence 999999999 9999999999999999999875 4679999999999987654443
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=9.4e-17 Score=157.11 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=106.1
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccc
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (741)
+.+..+++++++++++| ++|+||||+|||||+++|+|.+.+..+++.......... . ....+.+....+...
T Consensus 10 ~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----~-~~~~~~i~~~~q~~~ 83 (173)
T cd03230 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE-----P-EEVKRRIGYLPEEPS 83 (173)
T ss_pred ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-----h-HhhhccEEEEecCCc
Confidence 33445889999999999 789999999999999999999988888776432111000 0 111112222222211
Q ss_pred cCCCccchhhh--hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCe
Q psy11254 269 FPFYSSAIVDK--YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346 (741)
Q Consensus 269 ~~~~~~~~~~~--~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v 346 (741)
+... ...... +|||+.+++ .+++|+..+|.||++|| |++++|+..+..+.+++..+.. .+.
T Consensus 84 ~~~~-~tv~~~~~LS~G~~qrv--~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~~----~g~ 146 (173)
T cd03230 84 LYEN-LTVRENLKLSGGMKQRL--ALAQALLHDPELLILDE----------PTSGLDPESRREFWELLRELKK----EGK 146 (173)
T ss_pred cccC-CcHHHHhhcCHHHHHHH--HHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH----CCC
Confidence 1100 011111 899999999 99999999999999999 9999999999999999998754 246
Q ss_pred EEEEeeCCCCCCCcc
Q psy11254 347 KMIMATNRPDTLDPA 361 (741)
Q Consensus 347 ~vI~at~~~~~ld~a 361 (741)
++|++||+++.+...
T Consensus 147 tiii~th~~~~~~~~ 161 (173)
T cd03230 147 TILLSSHILEEAERL 161 (173)
T ss_pred EEEEECCCHHHHHHh
Confidence 899999998876533
No 246
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=9.5e-17 Score=169.28 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=116.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---------------------------chh
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------------TSK 245 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------------~~~ 245 (741)
.+++++++++.+| ++|+||||||||||+++|+|.+.+..|++...... +..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4889999999999 88999999999999999999998877766432110 011
Q ss_pred hHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+++.+.. ......++..+++.+++.......+..+|||+.+++ .|++|+..+|.+|++|| |+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv--~lAral~~~p~lLlLDE----------Pt 168 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRV--AIAGAVAMRPKIIILDE----------AT 168 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC----------Cc
Confidence 1221110 011223456667777777666778899999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
+++|+..+..+.+++..+.. ..+.+||++||+++.+
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~---~~g~tilivtH~~~~~ 204 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRD---DYQMTVISITHDLDEV 204 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 99999999999999988854 2367999999998876
No 247
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.65 E-value=1.1e-16 Score=165.52 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=112.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeeccccc--------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFV-------------------- 242 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~-------------------- 242 (741)
+.+.+.+..++++++|++++| ++|+||||||||||+++|+|.+ .+..+++......
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (243)
T TIGR01978 6 LHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQY 85 (243)
T ss_pred EEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecc
Confidence 344455566899999999999 7899999999999999999984 4555555321100
Q ss_pred -------chhhHHHHHhh-------------hhhhhcccccccccccCC-Cccchhh-hhcchHHHHHHHHHHHHHhcCC
Q psy11254 243 -------TSKEDMAILMG-------------NQLKRRSTHHLEKTYFPF-YSSAIVD-KYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 243 -------~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~-~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P 300 (741)
+..+.+..... .....++...++.+++.. .....+. .+|||+++++ .|++|+..+|
T Consensus 86 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl--~la~al~~~p 163 (243)
T TIGR01978 86 PEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN--EILQMALLEP 163 (243)
T ss_pred ccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH--HHHHHHhcCC
Confidence 00001111000 001123344555556642 2344555 5999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
.+|++|| |++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 164 ~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 164 KLAILDE----------IDSGLDIDALKIVAEGINRLRE----PDRSFLIITHYQRLLNY 209 (243)
T ss_pred CEEEecC----------CcccCCHHHHHHHHHHHHHHHH----CCcEEEEEEecHHHHHh
Confidence 9999999 9999999999999999998753 35689999999987654
No 248
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.65 E-value=1.2e-16 Score=155.81 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=101.4
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh--hHHHHHhhhhhhhcccccccccc
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK--EDMAILMGNQLKRRSTHHLEKTY 268 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~ 268 (741)
...++++++|++++| +.|+||||||||||++++.+. .+.+......... ..+.+..+ ...++.++
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~q-------~~~l~~~~ 75 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFIDQ-------LQFLIDVG 75 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEhH-------HHHHHHcC
Confidence 345788999999999 789999999999999999742 2233211110000 00001111 12344555
Q ss_pred cCC-CccchhhhhcchHHHHHHHHHHHHHhcC--CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCC
Q psy11254 269 FPF-YSSAIVDKYIGESARLIREMFNYARNHQ--PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 345 (741)
Q Consensus 269 ~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~--P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~ 345 (741)
+.. .....+..+|||+++++ .+++|+..+ |+++++|| |++++|+.....+.+++..+.. .+
T Consensus 76 L~~~~~~~~~~~LSgGq~qrl--~laral~~~~~p~llLlDE----------Pt~~LD~~~~~~l~~~l~~~~~----~g 139 (176)
T cd03238 76 LGYLTLGQKLSTLSGGELQRV--KLASELFSEPPGTLFILDE----------PSTGLHQQDINQLLEVIKGLID----LG 139 (176)
T ss_pred CCccccCCCcCcCCHHHHHHH--HHHHHHhhCCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----CC
Confidence 543 24667889999999999 999999999 99999999 9999999999999999988743 35
Q ss_pred eEEEEeeCCCCCC
Q psy11254 346 VKMIMATNRPDTL 358 (741)
Q Consensus 346 v~vI~at~~~~~l 358 (741)
.+||++||+++.+
T Consensus 140 ~tvIivSH~~~~~ 152 (176)
T cd03238 140 NTVILIEHNLDVL 152 (176)
T ss_pred CEEEEEeCCHHHH
Confidence 6899999998765
No 249
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.8e-17 Score=166.48 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=113.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+....+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 12 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (237)
T PRK11614 12 SAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRV 91 (237)
T ss_pred EEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCccc
Confidence 34444556899999999999 78999999999999999999998877765432110
Q ss_pred ----chhhHHHHHh--h--hhhhhccccccccc-ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 ----TSKEDMAILM--G--NQLKRRSTHHLEKT-YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 ----~~~~~~~~~~--~--~~~~~~~~~~l~~~-~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+..+++.... . .....++...++.+ ++.......+..+|||+.+++ .+++|+..+|+||++||
T Consensus 92 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~illlDE------ 163 (237)
T PRK11614 92 FSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQML--AIGRALMSQPRLLLLDE------ 163 (237)
T ss_pred CCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHH--HHHHHHHhCCCEEEEcC------
Confidence 0011111100 0 01111222223333 233333456788999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+...+.
T Consensus 164 ----Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~~~d 205 (237)
T PRK11614 164 ----PSLGLAPIIIQQIFDTIEQLRE----QGMTIFLVEQNANQALKLAD 205 (237)
T ss_pred ----ccccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCcHHHHHhhCC
Confidence 9999999999999999988753 35689999999887654443
No 250
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.3e-16 Score=169.76 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=118.9
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------- 241 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------- 241 (741)
.++++++|++.+| ++|+||||||||||+++|+|.+.+..+++.....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4899999999999 8899999999999999999999887776543100
Q ss_pred -----------c---------chhhHHHHHh------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHH
Q psy11254 242 -----------V---------TSKEDMAILM------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNY 294 (741)
Q Consensus 242 -----------~---------~~~~~~~~~~------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~ 294 (741)
. +..+++.+.. ......++..+++.+++. ......+..+|||+++++ +|++
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrv--alA~ 178 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRV--ALAG 178 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH--HHHH
Confidence 0 0011121111 012234566677778885 456778899999999999 9999
Q ss_pred HHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 295 ARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 295 A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|+..+|++|++|| |++++|+..+..+.+++.++.. .+.+||++||+++.+...+.
T Consensus 179 aL~~~P~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 179 ILAMEPDFLVFDE----------PTAGLDPQGVKEILEIFDNLNK----QGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred HHHhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeeCHHHHHHhCC
Confidence 9999999999999 9999999999999999998863 36799999999987654443
No 251
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.65 E-value=1.3e-16 Score=163.53 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 6899999999999 88999999999999999999988776655421100
Q ss_pred -chhhHHHHHh---hh----hhhhc-ccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 243 -TSKEDMAILM---GN----QLKRR-STHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 243 -~~~~~~~~~~---~~----~~~~~-~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
+..+++.... +. ..... ....++.+++. ......+..+|||+++++ .|++|+..+|++|++||
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~~~p~lllLDE----- 171 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV--AIARALALNPKLLIADE----- 171 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH--HHHHHHhcCCCEEEecC-----
Confidence 0011111100 00 00011 12344555553 345667889999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 172 -----Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 172 -----PTSALDVSVQAQILDLLKKLQE---ELGLTLLFITHDLGVVAK 211 (228)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 225699999999987653
No 252
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.64 E-value=7.3e-17 Score=168.24 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=118.9
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
...+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 8 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (256)
T TIGR03873 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTA 87 (256)
T ss_pred EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccC
Confidence 34445567899999999999 7899999999999999999998877665543210
Q ss_pred --cchhhHHHHHh--h--------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 242 --VTSKEDMAILM--G--------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 242 --~~~~~~~~~~~--~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
.+..+++.... . .....++...++.+++.......+..+|||+.+++ .+++|+..+|.++++||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~~~p~llllDE-- 163 (256)
T TIGR03873 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV--HVARALAQEPKLLLLDE-- 163 (256)
T ss_pred CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC--
Confidence 00111221100 0 01112344556666666556777889999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+.....+.+++.++.. .+.+||++||+++.+...+
T Consensus 164 --------Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~~~ 204 (256)
T TIGR03873 164 --------PTNHLDVRAQLETLALVRELAA----TGVTVVAALHDLNLAASYC 204 (256)
T ss_pred --------ccccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999998853 3568999999999875433
No 253
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.64 E-value=1.1e-16 Score=165.97 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=115.5
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~~------------------- 242 (741)
+.+....++++++|++++| ++|+||||+|||||+++|+|.+.+. .+++......
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 88 (247)
T TIGR00972 9 LFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVF 88 (247)
T ss_pred EEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEe
Confidence 3344456889999999999 7899999999999999999999876 6665432110
Q ss_pred --------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 --------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 --------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
...+++..... .....++..+++.+++. ......+..+|||+++++ ++++|+..+|.+|
T Consensus 89 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral~~~p~ll 166 (247)
T TIGR00972 89 QKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL--CIARALAVEPEVL 166 (247)
T ss_pred cCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH--HHHHHHhcCCCEE
Confidence 00111111100 01112334455556665 344667789999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
++|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+
T Consensus 167 llDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiiivsH~~~~~~~~~ 210 (247)
T TIGR00972 167 LLDE----------PTSALDPIATGKIEELIQELKK-----KYTIVIVTHNMQQAARIS 210 (247)
T ss_pred EEeC----------CcccCCHHHHHHHHHHHHHHHh-----cCeEEEEecCHHHHHHhC
Confidence 9999 9999999999999999988753 258999999998765433
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.64 E-value=9.7e-17 Score=167.06 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=116.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------c--h-------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------T--S------------- 244 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------~--~------------- 244 (741)
.+.+....++++++|++++| ++|+||||||||||+++|+|.+.+..+++...... . .
T Consensus 10 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 89 (253)
T TIGR02323 10 SKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWG 89 (253)
T ss_pred EEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceE
Confidence 33444456789999999999 78999999999999999999998877666432110 0 0
Q ss_pred ----------------hhHHHHH---hh----hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 245 ----------------KEDMAIL---MG----NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 245 ----------------~~~~~~~---~~----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
..++... .. .....++..+++.+++. ......+..+|||+++++ ++++|+..+|
T Consensus 90 ~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv--~laral~~~p 167 (253)
T TIGR02323 90 FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL--QIARNLVTRP 167 (253)
T ss_pred EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH--HHHHHHhcCC
Confidence 0011000 00 01122334455666664 245667889999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.+|++|| |++++|+..+..+.+++.++.. ..+.++|++||+++.+...+
T Consensus 168 ~vlllDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 168 RLVFMDE----------PTGGLDVSVQARLLDLLRGLVR---DLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred CEEEEcC----------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhc
Confidence 9999999 9999999999999999987643 23679999999998765433
No 255
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1e-16 Score=169.63 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=118.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 5899999999999 78999999999999999999998877765432100
Q ss_pred -chhhHHHHHh------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 -TSKEDMAILM------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 -~~~~~~~~~~------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++.... ......++..+++.+++. ......+..+|||+.+++ .+++|+..+|+||++||
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv--~laraL~~~p~illlDE------- 171 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI--AIVSILAMNPDIIVLDE------- 171 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHHhCCCEEEEEC-------
Confidence 0011121111 011234455667777775 445677899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+...+.|
T Consensus 172 ---Pt~~LD~~~~~~l~~~l~~l~~---~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 172 ---PTAGLDPQSKRQVMRLLKSLQT---DENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999998853 2467999999999877654443
No 256
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-16 Score=169.64 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=117.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++......
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 5899999999999 78999999999999999999998876655432110
Q ss_pred -chhhHHHHHhh------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 -TSKEDMAILMG------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 -~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++.+... .....++..+++.+++. ......+..+|||+++++ +|++|+..+|.+|++||
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl--~laral~~~p~lLlLDE------- 171 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV--AIAGVMAYEPEILCLDE------- 171 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC-------
Confidence 00111111100 11223455566777775 456778899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+.
T Consensus 172 ---Pt~gLD~~~~~~l~~~l~~l~~----~g~tvlivsH~~~~~~~~~d 213 (287)
T PRK13641 172 ---PAAGLDPEGRKEMMQLFKDYQK----AGHTVILVTHNMDDVAEYAD 213 (287)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999998753 36799999999987764443
No 257
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=7.7e-17 Score=170.35 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=119.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++......
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 45899999999999 88999999999999999999998776665432110
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.... ......++..+++.+++.......+..+|||+.+++ .|++|+..+|.+|++||
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl--~laraL~~~p~lLilDE--------- 167 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV--AIAGVLVMEPKVLVLDE--------- 167 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC---------
Confidence 0011111100 011223455666777777667788999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+.|
T Consensus 168 -Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 168 -PTAGLDPMGVSEIMKLLVEMQK---ELGLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred -CccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999988753 2367999999999887644443
No 258
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.9e-17 Score=170.02 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=117.4
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++.+| ++|+||||||||||+|+|+|.+.+..|++......
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 5899999999999 78999999999999999999998876655332110
Q ss_pred -chhhHHHHHhh------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 -TSKEDMAILMG------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 -~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++.+... .....++..+++.+++. ......+..+|||+++++ .+++|+..+|.||++||
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv--~lAraL~~~P~llllDE------- 171 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV--AIAGVLAMEPEVLVLDE------- 171 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC-------
Confidence 00111111110 11223455667777775 445677899999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+...+.
T Consensus 172 ---Pt~~LD~~~~~~l~~~L~~l~~---~~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 172 ---PTAGLDPKGRKEMMEMFYKLHK---EKGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999988753 236799999999987754433
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.64 E-value=7.7e-17 Score=168.65 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=117.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCc---eeeecccc----------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANF---LKVVSSLF---------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~---~~v~~~~~---------------------- 241 (741)
+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.++. +++.....
T Consensus 12 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~ 91 (262)
T PRK09984 12 KTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYI 91 (262)
T ss_pred EEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEE
Confidence 3344556899999999999 78999999999999999999987642 44331110
Q ss_pred ---------cchhhHHHHHh--------------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc
Q psy11254 242 ---------VTSKEDMAILM--------------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH 298 (741)
Q Consensus 242 ---------~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~ 298 (741)
.+..+++.... ......++..+++.+++.......+..+|||+++++ +|++|+..
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~ 169 (262)
T PRK09984 92 FQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV--AIARALMQ 169 (262)
T ss_pred ccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH--HHHHHHhc
Confidence 00011111100 001122345566666666555677889999999999 99999999
Q ss_pred CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 299 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 299 ~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|+||++|| |++++|...+..+.+++..+.. ..+.+||++||+++.+...+.+
T Consensus 170 ~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 170 QAKVILADE----------PIASLDPESARIVMDTLRDINQ---NDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred CCCEEEecC----------ccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999 9999999999999999998753 2357999999999877644433
No 260
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.9e-16 Score=164.63 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=113.9
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~------------------- 241 (741)
.+.+.+..++++++|++++| ++|+||||||||||+++|+|.+.+ ..|++.....
T Consensus 10 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 89 (250)
T PRK14247 10 KVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQ 89 (250)
T ss_pred EEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEec
Confidence 33444556899999999999 789999999999999999999863 3555532110
Q ss_pred -------cchhhHHHHHhh--------hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 -------VTSKEDMAILMG--------NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 -------~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++..... .....++...++.+++.. .....+..+|||+++++ ++++|+..+|++
T Consensus 90 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral~~~p~l 167 (250)
T PRK14247 90 IPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL--CIARALAFQPEV 167 (250)
T ss_pred cCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH--HHHHHHhcCCCE
Confidence 011112221110 011123344555555532 34566789999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+
T Consensus 168 llLDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~~~~~ 212 (250)
T PRK14247 168 LLADE----------PTANLDPENTAKIESLFLELKK-----DMTIVLVTHFPQQAARIS 212 (250)
T ss_pred EEEcC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhc
Confidence 99999 9999999999999999988742 468999999998765433
No 261
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.5e-16 Score=167.57 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=118.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++.+| ++|+||||+|||||+|+|+|.+.+..+++......
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 45899999999999 78999999999999999999988776665432100
Q ss_pred chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++..... .....++..+++.+++.......+..+|||+.+++ +|++|+..+|++|++||
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv--~laral~~~p~llllDE--------- 163 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRV--AIAGILAMKPEIIVLDE--------- 163 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 00011111000 01123455666777776666778899999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+...+.+
T Consensus 164 -Pt~gLD~~~~~~l~~~l~~l~~----~~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 164 -PTSGLDPMGASQIMKLLYDLNK----EGITIIISTHDVDLVPVYADK 206 (275)
T ss_pred -CCcCCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999998853 367999999999877644443
No 262
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.6e-16 Score=167.71 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=117.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------T 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------~ 243 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++...... .
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 45999999999999 78999999999999999999998877765432110 0
Q ss_pred hhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 244 SKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
..+++.+.. ......++..+++.+++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE---------- 170 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRV--AIAGILAMRPECIIFDE---------- 170 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------
Confidence 011111110 011223455566667776666778899999999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+.
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 171 PTAMLDPSGRREVVNTIKELNK---KYGITIILITHYMEEAV 209 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecChHHHh
Confidence 9999999999999999998853 23679999999999875
No 263
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.64 E-value=1.7e-16 Score=165.62 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=116.8
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------c-----------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------T----------------- 243 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------~----------------- 243 (741)
+.+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+..|++...... .
T Consensus 14 ~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK11701 14 KLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGF 93 (258)
T ss_pred EEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEE
Confidence 3344456889999999999 88999999999999999999998876665432110 0
Q ss_pred --------------hhhHHHHH---hh----hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 244 --------------SKEDMAIL---MG----NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 244 --------------~~~~~~~~---~~----~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
..+++... .+ .....++..+++.+++.. .....+..+|||+.+++ +|++|+..+|.
T Consensus 94 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl--~laral~~~p~ 171 (258)
T PRK11701 94 VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL--QIARNLVTHPR 171 (258)
T ss_pred EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH--HHHHHHhcCCC
Confidence 00011100 00 011223334555666642 44677889999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
||++|| |++++|+.....+.+++..+.. ..+.+||++||+++.+...+.
T Consensus 172 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~isH~~~~~~~~~d 220 (258)
T PRK11701 172 LVFMDE----------PTGGLDVSVQARLLDLLRGLVR---ELGLAVVIVTHDLAVARLLAH 220 (258)
T ss_pred EEEEcC----------CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEeCCHHHHHHhcC
Confidence 999999 9999999999999999988753 236799999999998764443
No 264
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=9.1e-17 Score=177.93 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=117.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------cchhhHHHHHh---h---
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------VTSKEDMAILM---G--- 253 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------~~~~~~~~~~~---~--- 253 (741)
.++++++|.+++| ++|+||||+|||||+++|+|.+.+..|.+..... .+..+++.... +
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~ 117 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTK 117 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCH
Confidence 4789999999999 7899999999999999999999888777653211 11122222111 1
Q ss_pred hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHH
Q psy11254 254 NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 333 (741)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~l 333 (741)
.....++..+++.+++.......+..+|||+++++ +|++|+..+|.+|+||| |++++|+..+..+.++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV--aLArAL~~~P~LLLLDE----------PTsgLD~~sr~~Llel 185 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL--GFAISVHINPDILVIDE----------ALSVGDQTFTKKCLDK 185 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH--HHHHHHHhCCCEEEEEC----------CcccCCHHHHHHHHHH
Confidence 11222334456666776666778899999999999 99999999999999999 9999999999999999
Q ss_pred HHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 334 LNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 334 L~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+.++.. .+.+||++||+++.+...+.+
T Consensus 186 L~el~~----~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 186 MNEFKE----QGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred HHHHHh----CCCEEEEEECCHHHHHHhCCE
Confidence 988753 356899999999877654433
No 265
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2e-16 Score=166.11 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=113.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc---------------------------hh
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT---------------------------SK 245 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~---------------------------~~ 245 (741)
.+++++++.+++| ++|+||||+|||||+++|+|.+.+..|++....... ..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 4889999999999 789999999999999999999988777664321100 00
Q ss_pred hHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
.++..... .....++..+++.+++.......+..+|||+.+++ .+++|+..+|++|++|| |+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~lllLDE----------Pt 170 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV--AIAGVLALNPSVIILDE----------AT 170 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------Cc
Confidence 01111000 01122344556666666556677889999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+++|+..+..+.+++.++.. ..+.++|++||+++.+.
T Consensus 171 ~~LD~~~~~~l~~~L~~~~~---~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 171 SMLDPDARQNLLDLVRKVKS---EHNITIISITHDLSEAM 207 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCchHHh
Confidence 99999999999999988753 23578999999998775
No 266
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=2.1e-16 Score=164.89 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=116.3
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------cchhhHHHHHh---h
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------VTSKEDMAILM---G 253 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------~~~~~~~~~~~---~ 253 (741)
....++++++|.+++| ++|+||||+|||||+++|+|.+.+..|.+..... .+..+++.... +
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 4456889999999999 7899999999999999999999887776543211 11122222110 1
Q ss_pred ---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHH
Q psy11254 254 ---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 330 (741)
Q Consensus 254 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l 330 (741)
......+..+++..++.......+..+|||+.+++ +|++|+..+|.+|+||| |++++|+..+..+
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~Laral~~~p~iLlLDE----------Pt~gLD~~~~~~l 182 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL--GFSINITVNPDILVIDE----------ALSVGDQTFAQKC 182 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH--HHHHHHhhCCCEEEEeC----------ccccCCHHHHHHH
Confidence 11111222344445555555667889999999999 99999999999999999 9999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 331 MELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 331 ~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
.+++..+.. .+.++|++||+++.+...+.+
T Consensus 183 ~~~L~~~~~----~g~tiIiisH~~~~i~~~~d~ 212 (264)
T PRK13546 183 LDKIYEFKE----QNKTIFFVSHNLGQVRQFCTK 212 (264)
T ss_pred HHHHHHHHH----CCCEEEEEcCCHHHHHHHcCE
Confidence 999988753 356999999999887654433
No 267
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.64 E-value=1.5e-16 Score=173.21 Aligned_cols=147 Identities=14% Similarity=0.182 Sum_probs=113.3
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------cchhh
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------VTSKE 246 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------~~~~~ 246 (741)
+++|++++| ++|+||||||||||+|+|+|.+.++.+++..... .+..+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 788899988 7899999999999999999999887666532110 01112
Q ss_pred HHHHHhh----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 247 DMAILMG----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 247 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
++.+... .....++..+++.+++.......+.++|||+++++ ++++|+..+|.+|+||| |++++
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRv--alAraL~~~p~lllLDE----------Pts~L 162 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV--AIGRALLSSPRLLLMDE----------PLAAL 162 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEcC----------CCcCC
Confidence 2222111 11123455667777777667788899999999999 99999999999999999 99999
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|+..+..+.+++.++.. ..+.++|++||+++.+..
T Consensus 163 D~~~~~~l~~~L~~l~~---~~g~tiiivtH~~~~~~~ 197 (354)
T TIGR02142 163 DDPRKYEILPYLERLHA---EFGIPILYVSHSLQEVLR 197 (354)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHH
Confidence 99999999999988754 236789999999987653
No 268
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.64 E-value=1.2e-16 Score=164.47 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=119.0
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------V 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~ 242 (741)
+.+.++.+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++..... .
T Consensus 8 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 8 KRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred EEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 3344556899999999999 7899999999999999999998776665532110 0
Q ss_pred chhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++..... ......+..+++.+++.......+..+|||+.+++ ++++|+..+|+++++||
T Consensus 88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl--~laral~~~p~llllDE--------- 156 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV--ALARALAVEPQVLLLDE--------- 156 (237)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC---------
Confidence 11112211110 01122344556666665555677889999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|......+.+++.++.. ..+.++|++||+++.+...+.+
T Consensus 157 -P~~~LD~~~~~~~~~~l~~~~~---~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 157 -PFGALDAKVRKELRSWLRKLHD---EVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHhhcCE
Confidence 9999999999999999988753 2357999999999877654444
No 269
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.63 E-value=1.9e-16 Score=163.56 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=104.3
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc----c----------cchhhHHHHHhhh--hhhhcccccccc
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL----F----------VTSKEDMAILMGN--QLKRRSTHHLEK 266 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~----~----------~~~~~~~~~~~~~--~~~~~~~~~l~~ 266 (741)
..| ++|+||||||||||+++|+|.+.+..+++.... + .+..+.+...... ........+++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 456 789999999999999999999988877664321 0 0111111111110 001123345556
Q ss_pred cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCe
Q psy11254 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346 (741)
Q Consensus 267 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v 346 (741)
+++.......+..+|||+.+++ ++++|+..+|+++++|| |++++|+..+..+.+++.++.. ..+.
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv--~iaraL~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~ 167 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRV--AIAACLSKDADIYLLDE----------PSAYLDVEQRLMASKVIRRFAE---NNEK 167 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCC
Confidence 6666556677899999999999 99999999999999999 9999999999999999988753 2356
Q ss_pred EEEEeeCCCCCCCc
Q psy11254 347 KMIMATNRPDTLDP 360 (741)
Q Consensus 347 ~vI~at~~~~~ld~ 360 (741)
+||++||+++.+..
T Consensus 168 tiiivsHd~~~~~~ 181 (246)
T cd03237 168 TAFVVEHDIIMIDY 181 (246)
T ss_pred EEEEEeCCHHHHHH
Confidence 99999999887753
No 270
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.3e-16 Score=186.50 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=121.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc-----cccch--------hhHHHH-
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS-----LFVTS--------KEDMAI- 250 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~-----~~~~~--------~~~~~~- 250 (741)
+.+.+.+..++++++|.+.+| ++|+||||||||||+|+|+|.+.++.|.+... .++.. ...+..
T Consensus 318 l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~ 397 (638)
T PRK10636 318 VSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQH 397 (638)
T ss_pred eEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHH
Confidence 344555667999999999999 88999999999999999999998877766531 01100 001111
Q ss_pred Hh---hhhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 251 LM---GNQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 251 ~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
+. ......++..+++.+++.. .....+..+|||+++++ +|++++..+|.|||||| |++++|+..
T Consensus 398 ~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl--~La~~l~~~p~lLlLDE----------Pt~~LD~~~ 465 (638)
T PRK10636 398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARL--VLALIVWQRPNLLLLDE----------PTNHLDLDM 465 (638)
T ss_pred HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCCCCCHHH
Confidence 11 1112234456667777753 45678899999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCC
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP 365 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~ 365 (741)
...+.++|..+. + +||++||++++++..+.+.
T Consensus 466 ~~~l~~~L~~~~------g-tvi~vSHd~~~~~~~~d~i 497 (638)
T PRK10636 466 RQALTEALIDFE------G-ALVVVSHDRHLLRSTTDDL 497 (638)
T ss_pred HHHHHHHHHHcC------C-eEEEEeCCHHHHHHhCCEE
Confidence 999999998863 2 8999999999887655543
No 271
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.63 E-value=1.2e-16 Score=167.50 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=114.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------ch-----------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------TS----------- 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------~~----------- 244 (741)
..++++++|.+++| ++|+||||||||||+++|+|.+.+..+++...... ..
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 35899999999999 78999999999999999999998877765432100 00
Q ss_pred -hhHHHHHh-------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 245 -KEDMAILM-------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 245 -~~~~~~~~-------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+.+.... ......++..+++.+++. ......+..+|||+.+++ +|++|+..+|.||+|||
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~~~p~lllLDE-------- 175 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL--GLARALILRPKVIIADE-------- 175 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH--HHHHHHHhCCCEEEEcC--------
Confidence 00111100 001122344556666763 344566789999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 176 --Pt~~LD~~~~~~l~~~l~~~~~---~~g~tviivsH~~~~~~~~~ 217 (267)
T PRK15112 176 --ALASLDMSMRSQLINLMLELQE---KQGISYIYVTQHLGMMKHIS 217 (267)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---HcCcEEEEEeCCHHHHHHhc
Confidence 9999999999999999988753 23568999999998775433
No 272
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-16 Score=168.58 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=114.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------cchh--------hHHHH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------VTSK--------EDMAI 250 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------~~~~--------~~~~~ 250 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++..... +... ..+..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 45889999999999 7899999999999999999999887776642110 0000 00000
Q ss_pred Hh-----h---------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 251 LM-----G---------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 251 ~~-----~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
.. . .....++..+++.+++.......+..+|||+.+++ .+++|+..+|.||++||
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv--~laraL~~~p~llllDE--------- 168 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV--FLARAIAQQGQVILLDE--------- 168 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 00 0 01112334455566665555677889999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 169 -Pt~~LD~~~~~~l~~~L~~~~~----~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 169 -PFTGVDVKTEARIISLLRELRD----EGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred -CCccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 3568999999998765433
No 273
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2e-16 Score=162.81 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=116.5
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHH
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMA 249 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~ 249 (741)
+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++..... ....+++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 789999999999 7899999999999999999998887765532110 11112222
Q ss_pred HHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 250 ILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 250 ~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
.... ......+..+++.+++.......+..+|||+.+++ ++++|+..+|.++++|| |++++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE----------Pt~gLD 161 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRV--AIARALVVNPKILLLDE----------PFSALD 161 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHH--HHHHHHHcCCCEEEECC----------CcccCC
Confidence 1110 11223345566667776666778889999999999 99999999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+..+.++.+++..+.. ..+.++|++||+++.+...+.
T Consensus 162 ~~~~~~l~~~l~~~~~---~~~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 162 VRTKEKLREELKKIRK---EFGVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHHhCC
Confidence 9999999999988743 225699999999987654443
No 274
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.2e-16 Score=166.72 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=114.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCc---eeeecccc---------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANF---LKVVSSLF--------------------------- 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~---~~v~~~~~--------------------------- 241 (741)
..++++++|++++| ++|+||||||||||+++|+|.+.+.. +++.....
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999 78999999999999999999987764 44432110
Q ss_pred cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.+... ....+++..+++.+++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv--~laral~~~P~llllDE-------- 169 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRV--AIAGILAVEPKIIILDE-------- 169 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 011111211100 01123345567777777666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+.
T Consensus 170 --Pt~gLD~~~~~~l~~~l~~l~~---~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 170 --STSMLDPAGKEQILKLIRKLKK---KNNLTVISITHDIDEAN 208 (282)
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHH
Confidence 9999999999999999988753 23679999999998763
No 275
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.8e-16 Score=167.55 Aligned_cols=150 Identities=16% Similarity=0.165 Sum_probs=112.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 4889999999999 77999999999999999999988876665432100
Q ss_pred -chhhHHHHHhh------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 243 -TSKEDMAILMG------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 243 -~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+..+++..... .....++..+++.+++. ......+..+|||+++++ .|++|+..+|++|++||
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE------- 171 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV--AIAGILAMEPKILVLDE------- 171 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC-------
Confidence 00011111000 01112233445556664 345677889999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 172 ---Pt~~LD~~~~~~l~~~l~~~~~----~~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 172 ---PTAGLDPKGRKELMTLFKKLHQ----SGMTIVLVTHLMDDVAN 210 (280)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeccHHHHHH
Confidence 9999999999999999988753 35699999999987654
No 276
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.63 E-value=2.5e-16 Score=159.58 Aligned_cols=150 Identities=14% Similarity=0.231 Sum_probs=113.6
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHH
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMA 249 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~ 249 (741)
.+.++++.+.+| ++|+||||+|||||+++|+|.+.+..+++..... .+..+++.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 345788888888 8899999999999999999999887665543110 11122232
Q ss_pred HHhhh------hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 250 ILMGN------QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 250 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
..... ....++..+++.+++.......+..+|||+.+++ .+++|+..+|.++++|| |++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE----------Pt~~LD 160 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV--ALARCLVRPNPILLLDE----------PFSALD 160 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCccCC
Confidence 21100 1123445566777776666778889999999999 99999999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
...+..+.+++.++.. ..+.++|++||+++.+..
T Consensus 161 ~~~~~~~~~~l~~~~~---~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 161 PLLREEMLALVKQLCS---ERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHh
Confidence 9999999999988753 235799999999887643
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=2e-16 Score=159.68 Aligned_cols=149 Identities=18% Similarity=0.195 Sum_probs=122.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCC-
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF- 271 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 271 (741)
..+++++|++.+| +.|+|.+||||||++|+|.+...++.|++..... ++..+......+++...++.+++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~-----~i~~~~~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK-----DITKLSKEERRERVLELLEKVGLPEE 101 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc-----chhhcchhHHHHHHHHHHHHhCCCHH
Confidence 4678899999999 7899999999999999999999999999875322 1222223344556777778877654
Q ss_pred CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEe
Q psy11254 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 351 (741)
Q Consensus 272 ~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~a 351 (741)
...+...++|||+.|++ .+++|++.+|++++.|| |++.+|...+..+..+|..+.. ..+++.+++
T Consensus 102 ~~~ryPhelSGGQrQRi--~IARALal~P~liV~DE----------pvSaLDvSiqaqIlnLL~dlq~---~~~lt~lFI 166 (268)
T COG4608 102 FLYRYPHELSGGQRQRI--GIARALALNPKLIVADE----------PVSALDVSVQAQILNLLKDLQE---ELGLTYLFI 166 (268)
T ss_pred HhhcCCcccCchhhhhH--HHHHHHhhCCcEEEecC----------chhhcchhHHHHHHHHHHHHHH---HhCCeEEEE
Confidence 45778889999999999 99999999999999999 9999999999999999998876 467899999
Q ss_pred eCCCCCCCcccc
Q psy11254 352 TNRPDTLDPALL 363 (741)
Q Consensus 352 t~~~~~ld~al~ 363 (741)
|||...+.....
T Consensus 167 sHDL~vv~~isd 178 (268)
T COG4608 167 SHDLSVVRYISD 178 (268)
T ss_pred EEEHHhhhhhcc
Confidence 999987654333
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.63 E-value=1.6e-16 Score=150.48 Aligned_cols=119 Identities=21% Similarity=0.235 Sum_probs=98.2
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccccccc
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (741)
....++++++|.+++| ++|.||||+|||||+++|+|.+.+..+++..... . .
T Consensus 11 ~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------~-------~--- 64 (144)
T cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------V-------K--- 64 (144)
T ss_pred CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------E-------E---
Confidence 3345788999999999 7799999999999999999999988887754210 0 0
Q ss_pred CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 270 PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 270 ~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
-.++.++|+|+.+++ .+++|+..+|.++++|| |++++|...+..+.+++.++. .++|
T Consensus 65 ----i~~~~~lS~G~~~rv--~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~-------~til 121 (144)
T cd03221 65 ----IGYFEQLSGGEKMRL--ALAKLLLENPNLLLLDE----------PTNHLDLESIEALEEALKEYP-------GTVI 121 (144)
T ss_pred ----EEEEccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHcC-------CEEE
Confidence 011123899999999 99999999999999999 999999999999999998762 3899
Q ss_pred EeeCCCCCCC
Q psy11254 350 MATNRPDTLD 359 (741)
Q Consensus 350 ~at~~~~~ld 359 (741)
++||+++.+.
T Consensus 122 ~~th~~~~~~ 131 (144)
T cd03221 122 LVSHDRYFLD 131 (144)
T ss_pred EEECCHHHHH
Confidence 9999988765
No 279
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.63 E-value=1.6e-16 Score=161.75 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=104.6
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---h----h--------------HHHH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---K----E--------------DMAI 250 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~----~--------------~~~~ 250 (741)
..++++++|++++| ++|+||||+|||||+++|+|...+..+++........ . . .+..
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 45899999999999 7899999999999999999998877776643211000 0 0 0000
Q ss_pred Hh----hhhhhhcccccccccccCCCccc-----------hhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 251 LM----GNQLKRRSTHHLEKTYFPFYSSA-----------IVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 251 ~~----~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.. .......+...++.+++...... .+..+|||+++++ .+++|+..+|++|++||
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl--~la~al~~~p~llllDE-------- 166 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV--ALARALLNDPPILLLDE-------- 166 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 00 00000111222233333221121 2468999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+..+..+.+++.++.. . .+||++||+++.+
T Consensus 167 --Pt~~LD~~~~~~l~~~l~~~~~----~-~tii~~sH~~~~~ 202 (220)
T cd03245 167 --PTSAMDMNSEERLKERLRQLLG----D-KTLIIITHRPSLL 202 (220)
T ss_pred --ccccCCHHHHHHHHHHHHHhcC----C-CEEEEEeCCHHHH
Confidence 9999999999999999988753 2 6899999998754
No 280
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=6.5e-15 Score=155.61 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=109.6
Q ss_pred HHHhhhCCCCCC-C--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------cchhh------------------
Q psy11254 195 ELFQRVGITPPK-G--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------VTSKE------------------ 246 (741)
Q Consensus 195 ~~~~~~~l~~~~-G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------~~~~~------------------ 246 (741)
.-|+=.+++.|+ | +.|+||||.||||.+|++||++.|++++...... +.+.+
T Consensus 87 NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K 166 (591)
T COG1245 87 NGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHK 166 (591)
T ss_pred CceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecc
Confidence 345555676666 4 7799999999999999999999999887754200 01100
Q ss_pred -------------HHHHHhhh-hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 247 -------------DMAILMGN-QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 247 -------------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
.+..+... .-..+...+.+.+++....++-++++|||.-|++ +++.|+..+.++.|+||
T Consensus 167 ~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~--aIaa~l~rdADvY~FDE----- 239 (591)
T COG1245 167 PQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRV--AIAAALLRDADVYFFDE----- 239 (591)
T ss_pred hHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHH--HHHHHHhccCCEEEEcC-----
Confidence 00011100 1112334455566666667788999999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++.+|..++-....++.++.. .+..||++.||+..||
T Consensus 240 -----psSyLDi~qRl~~ar~Irel~~----~~k~ViVVEHDLavLD 277 (591)
T COG1245 240 -----PSSYLDIRQRLNAARVIRELAE----DGKYVIVVEHDLAVLD 277 (591)
T ss_pred -----CcccccHHHHHHHHHHHHHHhc----cCCeEEEEechHHHHH
Confidence 9999999888888888888764 3568999999998777
No 281
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.5e-16 Score=163.39 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=112.0
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHHHHh
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMAILM 252 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~~~~ 252 (741)
+++|.+.+| ++|+||||||||||+++|+|.+.+..+++..... .+..+++....
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 678888888 7899999999999999999998877665542210 01111221100
Q ss_pred --h----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 253 --G----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 253 --~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
. .....++..+++.+++.......+..+|||+.+++ .+++|+..+|++|++|| |++++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~lllLDE----------P~~gLD~~~ 164 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV--ALARCLVREQPILLLDE----------PFSALDPAL 164 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CcccCCHHH
Confidence 0 01122345556667776666778889999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+..+.+++..+.. ..+.++|++||+++.+...+.
T Consensus 165 ~~~~~~~l~~~~~---~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 165 RQEMLTLVSQVCQ---ERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHhCC
Confidence 9999999988743 235689999999998764443
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.62 E-value=2.7e-16 Score=153.41 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=98.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEK 266 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (741)
+.++...++.+. +.+++| ++|+||||+|||||+|+|+|.+.++.+++......
T Consensus 8 ~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------------------ 62 (177)
T cd03222 8 KRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------------------ 62 (177)
T ss_pred EEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------------------
Confidence 334445556653 677788 78999999999999999999999988887642110
Q ss_pred cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCe
Q psy11254 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346 (741)
Q Consensus 267 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v 346 (741)
.++. .+.. .+|||+++++ .+++|+..+|+++++|| |++++|+..+..+.+++.++.. ..+.
T Consensus 63 i~~~---~q~~-~LSgGq~qrv--~laral~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~~~~---~~~~ 123 (177)
T cd03222 63 PVYK---PQYI-DLSGGELQRV--AIAAALLRNATFYLFDE----------PSAYLDIEQRLNAARAIRRLSE---EGKK 123 (177)
T ss_pred EEEE---cccC-CCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHH---cCCC
Confidence 0000 0000 1899999999 99999999999999999 9999999999999999988753 2336
Q ss_pred EEEEeeCCCCCCCc
Q psy11254 347 KMIMATNRPDTLDP 360 (741)
Q Consensus 347 ~vI~at~~~~~ld~ 360 (741)
++|++||+++.+..
T Consensus 124 tiiivsH~~~~~~~ 137 (177)
T cd03222 124 TALVVEHDLAVLDY 137 (177)
T ss_pred EEEEEECCHHHHHH
Confidence 89999999987753
No 283
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.7e-16 Score=168.45 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.++++++|++.+| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 4899999999999 78999999999999999999998776655321100
Q ss_pred --chhhHHHHHhh------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 --TSKEDMAILMG------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 --~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+..+++..... .....++..+++.+++. ......+..+|||+.+++ ++++|+..+|++|+|||
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv--~laral~~~p~lLlLDE------ 176 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV--ALAGIIAMDGNTLVLDE------ 176 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEeC------
Confidence 00011111000 01112233455556663 345677899999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+
T Consensus 177 ----Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiiiisH~~~~~~~~~ 218 (289)
T PRK13645 177 ----PTGGLDPKGEEDFINLFERLNK---EYKKRIIMVTHNMDQVLRIA 218 (289)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHHhC
Confidence 9999999999999999988753 23568999999998765433
No 284
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.7e-16 Score=168.39 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=115.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..|++......
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 4899999999999 88999999999999999999998877666432100
Q ss_pred -------------chhhHHHHHh------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 -------------TSKEDMAILM------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 -------------~~~~~~~~~~------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
+..+++.+.. ......++..+++.+++. ......+..+|||+++++ ++++|+..+|.|
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv--aiAraL~~~p~i 197 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV--AIAGILAIQPEI 197 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH--HHHHHHHcCCCE
Confidence 0001111100 011223455566667775 345677889999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|+||| |++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 198 LLLDE----------PtsgLD~~~~~~l~~~L~~l~~----~g~TiiivtHd~~~~~~~a 243 (320)
T PRK13631 198 LIFDE----------PTAGLDPKGEHEMMQLILDAKA----NNKTVFVITHTMEHVLEVA 243 (320)
T ss_pred EEEEC----------CccCCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHHHhC
Confidence 99999 9999999999999999988753 3569999999998765433
No 285
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.62 E-value=1.7e-16 Score=166.33 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=114.6
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC--------ceeeeccccc---------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--------FLKVVSSLFV--------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~--------~~~v~~~~~~--------------- 242 (741)
.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+. .+++......
T Consensus 8 ~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 8 HVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred EEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 34455567899999999999 7899999999999999999998775 5555432100
Q ss_pred -----------chhhHHHHHh--h--------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh----
Q psy11254 243 -----------TSKEDMAILM--G--------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN---- 297 (741)
Q Consensus 243 -----------~~~~~~~~~~--~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~---- 297 (741)
+..+++.... . .....++...++.+++.......+.++|||+.+++ .|++|+.
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~~~ 165 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV--QFARVLAQLWP 165 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHhcccc
Confidence 0001111100 0 00111233445556665555677889999999999 9999999
Q ss_pred -----cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 298 -----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 298 -----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
.+|.+|++|| |++++|+..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 166 ~~~~~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 166 PHDAAQPPRYLLLDE----------PTAALDLAHQHRLLDTVRRLAR---DWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred ccccCCCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEECCHHHHHH
Confidence 4999999999 9999999999999999998753 235689999999987653
No 286
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.62 E-value=3.8e-16 Score=159.06 Aligned_cols=149 Identities=16% Similarity=0.246 Sum_probs=114.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------------------V 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------------------~ 242 (741)
..++++++|++++| ++|+||||+|||||+++|+|.+.+..+++..... .
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 45899999999999 8899999999999999999998887776643211 0
Q ss_pred chhhHHHHHhh-------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 TSKEDMAILMG-------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 ~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+..+++..... .....++..+++.+++.......+.++|||+++++ .|++|+..+|++|++||
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv--~laral~~~p~illlDE-------- 167 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV--AIARALVHRPKLVLADE-------- 167 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 11111111110 01122455666777776666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++.
T Consensus 168 --P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sh~~~~ 204 (220)
T TIGR02982 168 --PTAALDSKSGRDVVELMQKLAR---EQGCTILIVTHDNRI 204 (220)
T ss_pred --CCCcCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHH
Confidence 9999999999999999988753 235799999999864
No 287
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3e-16 Score=163.38 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=110.1
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeecccc---------------------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLF--------------------- 241 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~--------------------- 241 (741)
.+.+..++++++|++.+| ++|+||||+|||||+++|+|... +..|++.....
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 94 (253)
T PRK14242 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94 (253)
T ss_pred EECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEec
Confidence 344456889999999999 78999999999999999999864 34454432110
Q ss_pred ------cchhhHHHHHhh-------hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++..... .....++...++.+++.. .....+..+|||+++++ .+++|+..+|.||+
T Consensus 95 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~laral~~~p~lll 172 (253)
T PRK14242 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL--CIARALAVEPEVLL 172 (253)
T ss_pred CCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 001112211100 011122333444444421 23456788999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+
T Consensus 173 lDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tvii~tH~~~~~~~~~ 215 (253)
T PRK14242 173 MDE----------PASALDPIATQKIEELIHELKA-----RYTIIIVTHNMQQAARVS 215 (253)
T ss_pred EeC----------CcccCCHHHHHHHHHHHHHHhc-----CCeEEEEEecHHHHHHhC
Confidence 999 9999999999999999998742 368999999998775433
No 288
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.62 E-value=3.4e-16 Score=151.98 Aligned_cols=136 Identities=25% Similarity=0.350 Sum_probs=99.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCC
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (741)
+.+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++.... ...++++.++.... .....+...+.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~----~~~i~~~~q~~~~~-~~tv~~nl~~~- 87 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE----GEDLLFLPQRPYLP-LGTLREQLIYP- 87 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----CceEEEECCCCccc-cccHHHHhhcc-
Confidence 45889999999999 789999999999999999999988877775421 00011111100000 00000000000
Q ss_pred CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEe
Q psy11254 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 351 (741)
Q Consensus 272 ~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~a 351 (741)
....+|||+++++ .+++|+..+|+++++|| |++++|+..+..+.+++.++ +.++|++
T Consensus 88 ----~~~~LS~G~~~rv--~laral~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiiv 144 (166)
T cd03223 88 ----WDDVLSGGEQQRL--AFARLLLHKPKFVFLDE----------ATSALDEESEDRLYQLLKEL-------GITVISV 144 (166)
T ss_pred ----CCCCCCHHHHHHH--HHHHHHHcCCCEEEEEC----------CccccCHHHHHHHHHHHHHh-------CCEEEEE
Confidence 3467999999999 99999999999999999 99999999999999998875 2489999
Q ss_pred eCCCCCC
Q psy11254 352 TNRPDTL 358 (741)
Q Consensus 352 t~~~~~l 358 (741)
||+++..
T Consensus 145 sh~~~~~ 151 (166)
T cd03223 145 GHRPSLW 151 (166)
T ss_pred eCChhHH
Confidence 9998643
No 289
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.9e-16 Score=162.56 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=112.1
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~------------------- 241 (741)
.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+. .+++.....
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 93 (254)
T PRK14273 14 NLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMV 93 (254)
T ss_pred EEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEE
Confidence 34445556899999999999 7899999999999999999998753 454432110
Q ss_pred --------cchhhHHHHHhhh-------hhhhccccccccccc----CCCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILMGN-------QLKRRSTHHLEKTYF----PFYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~----~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++...... ....++...++.+++ .......+..+|||+++++ +|++|+..+|++
T Consensus 94 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv--~laral~~~p~l 171 (254)
T PRK14273 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL--CIARTLAIEPNV 171 (254)
T ss_pred eeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH--HHHHHHHcCCCE
Confidence 0011112111100 111223333444443 1223556788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+
T Consensus 172 llLDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tvii~sH~~~~~~~~~ 216 (254)
T PRK14273 172 ILMDE----------PTSALDPISTGKIEELIINLKE-----SYTIIIVTHNMQQAGRIS 216 (254)
T ss_pred EEEeC----------CCcccCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhC
Confidence 99999 9999999999999999998842 368999999998765433
No 290
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=3.1e-16 Score=159.02 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=112.1
Q ss_pred ccCCChHHHhhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------- 241 (741)
+.+.+..+ +++|++.+- ++|+||||+|||||+++|+|.+.+..+++.....
T Consensus 8 ~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 8 KRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred EecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 33444433 666655443 6799999999999999999999877665532110
Q ss_pred ----cchhhHHHHHhh----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 242 ----VTSKEDMAILMG----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 242 ----~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.+..+++..... .....++...++.+++.......+..+|||+++++ .|++|+..+|++|++||
T Consensus 86 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE------ 157 (214)
T cd03297 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRV--ALARALAAQPELLLLDE------ 157 (214)
T ss_pred cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC------
Confidence 001111211111 01123445566667776556677889999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++.++.. ..+.++|++||+++.+...+
T Consensus 158 ----Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~~~~ 199 (214)
T cd03297 158 ----PFSALDRALRLQLLPELKQIKK---NLNIPVIFVTHDLSEAEYLA 199 (214)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH---HcCcEEEEEecCHHHHHHhc
Confidence 9999999999999999988753 23568999999998775433
No 291
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.62 E-value=5.7e-16 Score=158.43 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=108.9
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~~ 247 (741)
.+++++++.+++| ++|+||||+|||||+++|+|.+.+..+++....... ..++
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 5899999999999 789999999999999999999988877765321100 0000
Q ss_pred HHHHhhh----hhh-----hccccccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 248 MAILMGN----QLK-----RRSTHHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 248 ~~~~~~~----~~~-----~~~~~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+...... ... ..+...++.+ ++.......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv--~laral~~~p~llllDE--------- 176 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV--AIARALIRNPQVLILDE--------- 176 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 0000000 000 0112223333 444445666889999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.++|++||+++.+.
T Consensus 177 -Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~~ 213 (226)
T cd03248 177 -ATSALDAESEQQVQQALYDWPE-----RRTVLVIAHRLSTVE 213 (226)
T ss_pred -CcccCCHHHHHHHHHHHHHHcC-----CCEEEEEECCHHHHH
Confidence 9999999999999999988753 368999999998764
No 292
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.62 E-value=4.4e-16 Score=159.68 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=109.2
Q ss_pred HhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC----Cceeeecccc--------------c------------ch
Q psy11254 197 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA----NFLKVVSSLF--------------V------------TS 244 (741)
Q Consensus 197 ~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~----~~~~v~~~~~--------------~------------~~ 244 (741)
++++++++++| ++|+||||+|||||+++|+|.+.+ ..+++..... + ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 56788999998 789999999999999999999987 5665532110 0 00
Q ss_pred hhHHHHH---hh---hhhhhcccccccccccC---CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 245 KEDMAIL---MG---NQLKRRSTHHLEKTYFP---FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 245 ~~~~~~~---~~---~~~~~~~~~~l~~~~~~---~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+.+... .+ .....++...++.+++. ......+..+|||+++++ +|++|+..+|.||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~vllLDE-------- 151 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRV--MIALALLLEPPFLIADE-------- 151 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 0011100 00 01122344455556665 234667889999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|...+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 152 --Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~~ 191 (230)
T TIGR02770 152 --PTTDLDVVNQARVLKLLRELRQ---LFGTGILLITHDLGVVAR 191 (230)
T ss_pred --CccccCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235699999999987654
No 293
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.62 E-value=2.3e-16 Score=165.50 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=115.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|...+..+++......
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 56899999999999 78999999999999999999988877665432110
Q ss_pred --chhhHHHHHh-------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 243 --TSKEDMAILM-------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 243 --~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
...+.+.... ......++..+++.+++. ......+..+|||+.+++ .|++|+..+|+||++||
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl--~laral~~~p~lllLDE----- 177 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV--CLARALAVEPKLLILDE----- 177 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH--HHHHHHhcCCCEEEEeC-----
Confidence 0000111000 001112345556666664 345667788999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|...+..+.+++..+.. ..+.++|++||+++.+...+.
T Consensus 178 -----Pt~~LD~~~~~~~~~~l~~~~~---~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 178 -----AVSNLDLVLQAGVIRLLKKLQQ---QFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred -----CCcccCHHHHHHHHHHHHHHHH---HcCcEEEEEECCHHHHHHhCC
Confidence 9999999999999999988753 235699999999987764433
No 294
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.62 E-value=3.8e-16 Score=163.66 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=114.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 45889999999999 78999999999999999999998877665432100
Q ss_pred --chhhHHHHHh-------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 243 --TSKEDMAILM-------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 243 --~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
...+.+.... ......++..+++.+++. ......+..+|||+.+++ ++++|+..+|++|++||
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv--~laral~~~p~illLDE----- 176 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI--NIARALAVKPKLIVLDE----- 176 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC-----
Confidence 0000111100 001123345566667774 445677889999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+..
T Consensus 177 -----Pt~~LD~~~~~~l~~~l~~~~~---~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 177 -----AVSNLDMVLQAVILELLRKLQQ---AFGTAYLFITHDLRLVQS 216 (265)
T ss_pred -----CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEeCCHHHHHH
Confidence 9999999999999999988753 235789999999987754
No 295
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.6e-16 Score=162.79 Aligned_cols=158 Identities=21% Similarity=0.239 Sum_probs=113.2
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~------------------- 241 (741)
.+.+....++++++|++.+| ++|+||||+|||||+++|+|.+.++ .+++.....
T Consensus 11 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~ 90 (253)
T PRK14267 11 RVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90 (253)
T ss_pred EEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEE
Confidence 34444556899999999999 7799999999999999999998753 555432110
Q ss_pred ---------cchhhHHHHHhh--------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 242 ---------VTSKEDMAILMG--------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 242 ---------~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
.+..+++..... .....++..+++.+++. ......+..+|||+++++ +|++|+..+|
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p 168 (253)
T PRK14267 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL--VIARALAMKP 168 (253)
T ss_pred ecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH--HHHHHHhcCC
Confidence 011112211100 01112233444555542 234567789999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.+|++|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+
T Consensus 169 ~llllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~~~~~ 215 (253)
T PRK14267 169 KILLMDE----------PTANIDPVGTAKIEELLFELKK-----EYTIVLVTHSPAQAARVS 215 (253)
T ss_pred CEEEEcC----------CCccCCHHHHHHHHHHHHHHhh-----CCEEEEEECCHHHHHhhC
Confidence 9999999 9999999999999999998742 368999999998765433
No 296
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.62 E-value=3.1e-16 Score=154.80 Aligned_cols=145 Identities=13% Similarity=0.146 Sum_probs=103.3
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccccc---ccC
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKT---YFP 270 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~ 270 (741)
+++++++++++| ++|+||||+|||||+++|+|.+.+..+++..........+. .....+++....+.. .+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~~~ 90 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP----RDAIRAGIAYVPEDRKREGLV 90 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH----HHHHhCCeEEecCCcccCccc
Confidence 788899999999 78999999999999999999999888877643211100000 001111222222210 011
Q ss_pred C--Cc-cch--hhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCC
Q psy11254 271 F--YS-SAI--VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 345 (741)
Q Consensus 271 ~--~~-~~~--~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~ 345 (741)
. .. ..+ ...+|||+++++ .+++|+..+|.+|++|| |++++|+..+..+.+++..+.. .+
T Consensus 91 ~~~t~~e~l~~~~~LS~G~~qrl--~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~----~~ 154 (182)
T cd03215 91 LDLSVAENIALSSLLSGGNQQKV--VLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELAD----AG 154 (182)
T ss_pred CCCcHHHHHHHHhhcCHHHHHHH--HHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHH----CC
Confidence 0 00 111 112899999999 99999999999999999 9999999999999999988753 25
Q ss_pred eEEEEeeCCCCCCCc
Q psy11254 346 VKMIMATNRPDTLDP 360 (741)
Q Consensus 346 v~vI~at~~~~~ld~ 360 (741)
.++|++||+++.+..
T Consensus 155 ~tiii~sh~~~~~~~ 169 (182)
T cd03215 155 KAVLLISSELDELLG 169 (182)
T ss_pred CEEEEEeCCHHHHHH
Confidence 689999999887653
No 297
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.9e-16 Score=162.93 Aligned_cols=161 Identities=13% Similarity=0.151 Sum_probs=114.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF------------------ 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~------------------ 241 (741)
+.+.+....++++++|++.+| ++|+||||||||||+++|+|.+.+ ..+++.....
T Consensus 10 v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 89 (258)
T PRK14241 10 LNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGM 89 (258)
T ss_pred EEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEE
Confidence 334444556899999999999 789999999999999999998863 3555442110
Q ss_pred ----------cchhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 242 ----------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 242 ----------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
.+..+++.... + .....++..+++.+++. ......+..+|||+.+++ +|++|+..+|
T Consensus 90 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p 167 (258)
T PRK14241 90 VFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL--CIARAIAVEP 167 (258)
T ss_pred EccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH--HHHHHHhcCC
Confidence 01111221110 0 01112333444445542 234566789999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
.+|++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.+
T Consensus 168 ~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 168 DVLLMDE----------PCSALDPISTLAIEDLINELKQ-----DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred CEEEEcC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHHHHHhCCE
Confidence 9999999 9999999999999999988742 35899999999877644433
No 298
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.61 E-value=3.2e-16 Score=168.49 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=115.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------ 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------ 241 (741)
..++++++|++.+| ++|+|+||||||||+++|+|.+.+..+++.....
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 35789999999999 7899999999999999999999887666543210
Q ss_pred -cchhhHHHHHh--------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 -VTSKEDMAILM--------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 -~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++.+.. ......++..+++.+++. ......+.++|||+.|++ ++++|+..+|.+|++||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv--~iArAL~~~P~llilDE---- 187 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI--GIARALILEPKLIICDE---- 187 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC----
Confidence 00111121110 011223445566677763 345677889999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|...+..+.++|..+.. ..+.++|++||+++.+..
T Consensus 188 ------Pts~LD~~~~~~i~~lL~~l~~---~~~~til~iTHdl~~~~~ 227 (331)
T PRK15079 188 ------PVSALDVSIQAQVVNLLQQLQR---EMGLSLIFIAHDLAVVKH 227 (331)
T ss_pred ------CCccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999998854 236799999999987654
No 299
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.6e-16 Score=163.97 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=113.6
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------ 242 (741)
.+.+....++++++|++++| ++|+||||+|||||+++|+|.+.+ ..|++......
T Consensus 26 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 105 (267)
T PRK14235 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMV 105 (267)
T ss_pred EEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEE
Confidence 34444556899999999999 889999999999999999999864 45555321100
Q ss_pred ---------chhhHHHHHhh--------hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 243 ---------TSKEDMAILMG--------NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 243 ---------~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
+..+++..... .....++...++.+++.. .....+..+|||+.+++ ++++|+..+|.
T Consensus 106 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~laral~~~p~ 183 (267)
T PRK14235 106 FQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL--CIARAIAVSPE 183 (267)
T ss_pred ecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH--HHHHHHHcCCC
Confidence 00111211110 011122344555555532 23456788999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|++|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+
T Consensus 184 lllLDE----------Pt~~LD~~~~~~l~~~L~~l~~-----~~tiiivtH~~~~~~~~~ 229 (267)
T PRK14235 184 VILMDE----------PCSALDPIATAKVEELIDELRQ-----NYTIVIVTHSMQQAARVS 229 (267)
T ss_pred EEEEeC----------CCcCCCHHHHHHHHHHHHHHhc-----CCeEEEEEcCHHHHHhhC
Confidence 999999 9999999999999999988743 358999999998775433
No 300
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4e-16 Score=162.80 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=111.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc--------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF-------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~-------------------- 241 (741)
+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+.+ ..+++.....
T Consensus 20 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 99 (258)
T PRK14268 20 LWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVF 99 (258)
T ss_pred EEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEe
Confidence 3344456899999999999 789999999999999999998764 3454432110
Q ss_pred -------cchhhHHHHHhh------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 -------VTSKEDMAILMG------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 -------~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++..... .....++..+++.+++. ......+..+|||+.+++ ++++|+..+|+||+
T Consensus 100 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral~~~p~lll 177 (258)
T PRK14268 100 QKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL--CIARTLAVKPKIIL 177 (258)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEE
Confidence 000111111100 01112233445555442 223566789999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+
T Consensus 178 lDE----------Pt~~LD~~~~~~l~~~l~~l~~-----~~tiiivsH~~~~~~~~~ 220 (258)
T PRK14268 178 FDE----------PTSALDPISTARIEDLIMNLKK-----DYTIVIVTHNMQQAARIS 220 (258)
T ss_pred EeC----------CCcccCHHHHHHHHHHHHHHhh-----CCEEEEEECCHHHHHHhC
Confidence 999 9999999999999999988742 468999999998775433
No 301
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=3.8e-16 Score=160.06 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=104.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~ 246 (741)
+.++++++|++++| ++|+||||||||||+++|+|.+.+..+++........ .+
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 35899999999999 7899999999999999999999887776643211000 00
Q ss_pred HHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++..........++...++.. ++.......+..+|||+++++ .+++|+..+|++|++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv--~la~al~~~p~llllDE-------- 165 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLL--AIARAMLRDPKILILDE-------- 165 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 000000000001111111111 112222334678999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.+||++||+++.+.
T Consensus 166 --P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~~ 202 (229)
T cd03254 166 --ATSNIDTETEKLIQEALEKLMK-----GRTSIIIAHRLSTIK 202 (229)
T ss_pred --ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHHh
Confidence 9999999999999999988742 568999999998764
No 302
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4e-16 Score=168.24 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=114.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC----CCceeeecccc----------------------c---
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD----ANFLKVVSSLF----------------------V--- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~----~~~~~v~~~~~----------------------~--- 242 (741)
..++++++|++.+| ++|+|+||||||||+++|+|.+. ++.+++..... .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 45889999999999 78999999999999999999985 24444432110 0
Q ss_pred -------chhhHHHHH-hh-----------hhhhhcccccccccccCCC---ccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 243 -------TSKEDMAIL-MG-----------NQLKRRSTHHLEKTYFPFY---SSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 243 -------~~~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
....++... .. .....++..+++.+++... ....+.++|||+.|++ ++++|+..+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv--~iArAL~~~P 177 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKV--MIAIALANQP 177 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH--HHHHHHHCCC
Confidence 001111110 00 0112345566777777532 3567889999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.||++|| |++++|...+..+.++|.++.. ..+.++|++||+++.+...+
T Consensus 178 ~llilDE----------Pts~LD~~~~~~i~~lL~~l~~---~~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 178 RLLIADE----------PTNAMEPTTQAQIFRLLTRLNQ---NNNTTILLISHDLQMLSQWA 226 (330)
T ss_pred CEEEEeC----------CCCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHhC
Confidence 9999999 9999999999999999998864 24679999999988775433
No 303
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=4.3e-16 Score=167.45 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=113.2
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC----Cceeeeccccc--------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA----NFLKVVSSLFV-------------------------- 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~----~~~~v~~~~~~-------------------------- 242 (741)
.++++++|++.+| ++|+||||||||||+++|+|.+.+ ..+++......
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 5899999999999 789999999999999999998863 33433221100
Q ss_pred ------chhhHHHHHh-------hhhhhhcccccccccccCC---CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 ------TSKEDMAILM-------GNQLKRRSTHHLEKTYFPF---YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ------~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
.....+.... ......++..+++.+++.. .....+.++|||+.|++ ++++|+..+|.||++|
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv--~iArAL~~~P~llilD 178 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV--MIAMAIACRPKLLIAD 178 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH--HHHHHHHhCCCEEEEe
Confidence 0001111111 0112334566777777753 23567889999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
| |++++|...+..+.+++..+.. ..+.++|++||+++.+..
T Consensus 179 E----------Pts~LD~~~~~~il~lL~~l~~---~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 179 E----------PTTALDVTIQAQIIELLLELQQ---KENMALVLITHDLALVAE 219 (326)
T ss_pred C----------CCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHH
Confidence 9 9999999999999999998864 246799999999987653
No 304
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.5e-16 Score=161.26 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=113.8
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC---CCceeeecccc--------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSLF-------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~~~~-------------------- 241 (741)
+.+.+..+.+++++++++.+| ++|+||||+|||||+++|+|.+. +..+++.....
T Consensus 8 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~ 87 (246)
T PRK14269 8 LNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQ 87 (246)
T ss_pred eEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecC
Confidence 344455556899999999999 88999999999999999999874 34555432110
Q ss_pred -----cchhhHHHHHh---h-----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 -----VTSKEDMAILM---G-----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 -----~~~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++.... + .....++...++.+++. ......+..+|||+++++ ++++|+..+|.+|+
T Consensus 88 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~lll 165 (246)
T PRK14269 88 PNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL--CIARALAIKPKLLL 165 (246)
T ss_pred CccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 01111221110 0 11122334455665653 123456678999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+
T Consensus 166 LDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~tH~~~~~~~~~ 208 (246)
T PRK14269 166 LDE----------PTSALDPISSGVIEELLKELSH-----NLSMIMVTHNMQQGKRVA 208 (246)
T ss_pred EcC----------CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEecCHHHHHhhC
Confidence 999 9999999999999999988742 468999999998775433
No 305
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.61 E-value=3.9e-16 Score=162.56 Aligned_cols=155 Identities=20% Similarity=0.171 Sum_probs=112.4
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC----Cceeeecccc----------------------cch
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA----NFLKVVSSLF----------------------VTS 244 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~----~~~~v~~~~~----------------------~~~ 244 (741)
...+++++++.+.+| ++|+||||+|||||+++|+|.+.+ +.+++..... +..
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 345889999999999 889999999999999999999877 5555432110 000
Q ss_pred ----hhHHHHH---hhh-hhhhcccccccccccCC---CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 245 ----KEDMAIL---MGN-QLKRRSTHHLEKTYFPF---YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 245 ----~~~~~~~---~~~-~~~~~~~~~l~~~~~~~---~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
...+... .+. ....++...++.+++.. .....+..+|||+.+++ .|++|+..+|+||++||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv--~laral~~~p~lLlLDE------ 166 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM--MIALALLCEAPFIIADE------ 166 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH--HHHHHHhcCCCEEEEeC------
Confidence 0011110 010 01123444555666654 23567789999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+...+
T Consensus 167 ----Pt~~LD~~~~~~l~~~L~~~~~---~~g~til~~sH~~~~~~~~~ 208 (254)
T PRK10418 167 ----PTTDLDVVAQARILDLLESIVQ---KRALGMLLVTHDMGVVARLA 208 (254)
T ss_pred ----CCcccCHHHHHHHHHHHHHHHH---hcCcEEEEEecCHHHHHHhC
Confidence 9999999999999999988743 23579999999988765433
No 306
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.61 E-value=8.8e-16 Score=153.09 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=103.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeecccccchhhHHHHHhhhhhhhccccccccccc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (741)
..+++++++++.+| ++|+||||+|||||+++|+|.+ .+..+++.......... ...+.+....+...+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~--------~~~~~i~~~~q~~~~ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR--------SFRKIIGYVPQDDIL 93 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH--------hhhheEEEccCcccC
Confidence 46899999999999 7899999999999999999999 88878775432111100 111111111111111
Q ss_pred CC--Cc-c-----chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCC
Q psy11254 270 PF--YS-S-----AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341 (741)
Q Consensus 270 ~~--~~-~-----~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~ 341 (741)
.. .. . .....+|||+.+++ .+++|+..+|+++++|| |++++|...+..+.+++.++..
T Consensus 94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv--~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~~-- 159 (194)
T cd03213 94 HPTLTVRETLMFAAKLRGLSGGERKRV--SIALELVSNPSLLFLDE----------PTSGLDSSSALQVMSLLRRLAD-- 159 (194)
T ss_pred CCCCcHHHHHHHHHHhccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHh--
Confidence 00 00 0 01127999999999 99999999999999999 9999999999999999988753
Q ss_pred CCCCeEEEEeeCCCC-CCC
Q psy11254 342 SLGQVKMIMATNRPD-TLD 359 (741)
Q Consensus 342 ~~~~v~vI~at~~~~-~ld 359 (741)
.+.++|++||+++ .+.
T Consensus 160 --~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 160 --TGRTIICSIHQPSSEIF 176 (194)
T ss_pred --CCCEEEEEecCchHHHH
Confidence 3679999999986 443
No 307
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.1e-16 Score=162.98 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=111.1
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~~------------------- 242 (741)
+.+.+..++++++|++++| ++|+||||+|||||+++|+|.+. +..+++......
T Consensus 21 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 100 (260)
T PRK10744 21 FYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVF 100 (260)
T ss_pred EEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEe
Confidence 3344456899999999999 78999999999999999999875 234544321100
Q ss_pred --------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 --------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 --------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
+..+++..... .....++..+++.+++. ......+..+|||+.+++ .+++|+..+|.||
T Consensus 101 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~laral~~~p~ll 178 (260)
T PRK10744 101 QKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL--CIARGIAIRPEVL 178 (260)
T ss_pred cCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH--HHHHHHHCCCCEE
Confidence 00111111100 01112334445555542 223556788999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+
T Consensus 179 lLDE----------Pt~~LD~~~~~~l~~~L~~~~~-----~~tiii~sH~~~~~~~~~ 222 (260)
T PRK10744 179 LLDE----------PCSALDPISTGRIEELITELKQ-----DYTVVIVTHNMQQAARCS 222 (260)
T ss_pred EEcC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHhC
Confidence 9999 9999999999999999998742 358999999998765433
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.60 E-value=1.4e-15 Score=155.12 Aligned_cols=142 Identities=21% Similarity=0.211 Sum_probs=105.5
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------c------------chhhHHHHHh-----
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------V------------TSKEDMAILM----- 252 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------~------------~~~~~~~~~~----- 252 (741)
++.+| ++|+||||||||||+++|+|.+.+..+++..... + +..+.+....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 34566 8899999999999999999998877666543210 0 0011111100
Q ss_pred -----hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 253 -----GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 253 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
......++..+++.+++.......+..+|||+++++ .+++|+..+|++|++|| |++++|+..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~llilDE----------P~~~LD~~~~ 149 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRV--LVARALATRPSVLLLDE----------PFTGLDMPTQ 149 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CcccCCHHHH
Confidence 001122345556666776666777889999999999 99999999999999999 9999999999
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 328 RTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 328 ~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
..+.+++.++.. .+.++|++||+++.+..
T Consensus 150 ~~l~~~l~~~~~----~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 150 ELLTELFIELAG----AGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHHHHHHH----cCCEEEEEeCCHHHHHH
Confidence 999999988753 36799999999986654
No 309
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.60 E-value=1.1e-15 Score=156.38 Aligned_cols=150 Identities=18% Similarity=0.264 Sum_probs=110.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC---CCceeeecccc-----------------------cchh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSLF-----------------------VTSK 245 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~~~~-----------------------~~~~ 245 (741)
+.+++++++++.+| ++|+||||||||||+++|+|.+. +..+++..... .+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 56899999999999 78999999999999999999987 66665542110 0111
Q ss_pred hHHHHHhh---hh------hhhcccc-cccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 246 EDMAILMG---NQ------LKRRSTH-HLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 246 ~~~~~~~~---~~------~~~~~~~-~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
+++..... .. ...+... .++.+++.......+..+|||+.+++ ++++|+..+|.+|++||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~illlDE-------- 169 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRV--SIAVQLLWDPKVLILDE-------- 169 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHH--HHHHHHHhCCCEEEEeC--------
Confidence 22221110 00 0011222 45555555555667889999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC-CCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP-DTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~-~~ld 359 (741)
|++++|+..+..+.+++.++.. .+.++|++||++ +.+.
T Consensus 170 --P~~gLD~~~~~~~~~~l~~~~~----~~~tiii~sh~~~~~~~ 208 (226)
T cd03234 170 --PTSGLDSFTALNLVSTLSQLAR----RNRIVILTIHQPRSDLF 208 (226)
T ss_pred --CCcCCCHHHHHHHHHHHHHHHH----CCCEEEEEecCCCHHHH
Confidence 9999999999999999988753 256999999998 3544
No 310
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.1e-15 Score=157.29 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=105.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~~ 247 (741)
.++++++|++++| ++|+||||+|||||+++|+|.+.+..+++....... ..++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 5889999999999 789999999999999999999988777765321100 0000
Q ss_pred HHHHhhh----hhhh-----ccccccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 248 MAILMGN----QLKR-----RSTHHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 248 ~~~~~~~----~~~~-----~~~~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+...... .... .+...++.+ ++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~p~lllLDE--------- 164 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI--AIARALLKDPPILILDE--------- 164 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 1000000 0000 001111111 222223445678999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.++|++||+++.+.
T Consensus 165 -P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~~ 201 (234)
T cd03251 165 -ATSALDTESERLVQAALERLMK-----NRTTFVIAHRLSTIE 201 (234)
T ss_pred -ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHHh
Confidence 9999999999999999988742 468999999998875
No 311
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.8e-16 Score=163.12 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=110.1
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~~------------------- 242 (741)
+.+....++++++|++.+| ++|+||||||||||+++|+|.+. +..+++......
T Consensus 21 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~ 100 (269)
T PRK14259 21 ISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVF 100 (269)
T ss_pred EEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEc
Confidence 3344456899999999999 78999999999999999999875 344554321100
Q ss_pred --------chhhHHHHHh---h--hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 243 --------TSKEDMAILM---G--NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 243 --------~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
+..+++.... + .....++...++.+++. ......+..+|||+++++ +|++|+..+|++|++
T Consensus 101 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~lllL 178 (269)
T PRK14259 101 QQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL--CIARTIAIEPEVILM 178 (269)
T ss_pred cCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH--HHHHHHhcCCCEEEE
Confidence 0001111100 0 00011222233333331 223556788999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 179 DE----------Pt~gLD~~~~~~l~~~l~~~~~-----~~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 179 DE----------PCSALDPISTLKIEETMHELKK-----NFTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred cC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhcC
Confidence 99 9999999999999999988753 3689999999987764443
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=5.1e-16 Score=181.92 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=118.7
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----cc-----------chhhH
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FV-----------TSKED 247 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~-----------~~~~~ 247 (741)
.+.+.+.+..+|++++|.+.+| ++|+||||||||||+|+|+|.+.++.|.+.... ++ +..+.
T Consensus 324 ~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~ 403 (635)
T PRK11147 324 NVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDN 403 (635)
T ss_pred eeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHH
Confidence 3455556667999999999999 789999999999999999999988777664311 11 11111
Q ss_pred HHHHhh----hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 248 MAILMG----NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 248 ~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+..... .....++..++..+++. ......+..+|||+++++ +|++|+..+|.+||||| |++++
T Consensus 404 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl--~la~al~~~p~lLlLDE----------Pt~~L 471 (635)
T PRK11147 404 LAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRL--LLARLFLKPSNLLILDE----------PTNDL 471 (635)
T ss_pred HHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCCCC
Confidence 111100 00012234445555554 235667899999999999 99999999999999999 99999
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|......+.+++..+.+ +||++||++++++..+.+
T Consensus 472 D~~~~~~l~~~l~~~~~-------tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 472 DVETLELLEELLDSYQG-------TVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred CHHHHHHHHHHHHhCCC-------eEEEEECCHHHHHHhcCE
Confidence 99999999999987633 899999999988755544
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.4e-16 Score=179.22 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=119.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----cc------------chhhH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FV------------TSKED 247 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~------------~~~~~ 247 (741)
+.+.+.+..++++++|++.+| ++|+||||||||||+|+|+|.+.++.+++.... ++ ...+.
T Consensus 325 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~ 404 (530)
T PRK15064 325 LTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDW 404 (530)
T ss_pred eEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHH
Confidence 344455567899999999999 789999999999999999999988877764321 00 11111
Q ss_pred HHHHhh-hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 248 MAILMG-NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 248 ~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
+..... .....++..+++.+++. ......+..+|||+++++ +|++|+..+|.||++|| |++++|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~~~p~lllLDE----------Pt~~LD~~ 472 (530)
T PRK15064 405 MSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM--LFGKLMMQKPNVLVMDE----------PTNHMDME 472 (530)
T ss_pred HHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCCCCCHH
Confidence 111110 11122345566667763 445778899999999999 99999999999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
.+..+.+++..+. .+||++||+++++...+.+
T Consensus 473 ~~~~l~~~l~~~~-------~tvi~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 473 SIESLNMALEKYE-------GTLIFVSHDREFVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHCC-------CEEEEEeCCHHHHHHhCCE
Confidence 9999999998763 2899999999987654433
No 314
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.8e-16 Score=161.04 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=112.4
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~------------------- 241 (741)
.+.+....+++++++++++| ++|+||||+|||||+++|+|.+. +..+++.....
T Consensus 11 ~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~ 90 (251)
T PRK14251 11 HLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMV 90 (251)
T ss_pred EEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEE
Confidence 34444556899999999999 78999999999999999999885 23454432110
Q ss_pred --------cchhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++..... .....++...++.+++. ......+..+|||+.+++ ++++|+..+|++
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~--~laral~~~p~l 168 (251)
T PRK14251 91 FQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI--CIARALAVRPKV 168 (251)
T ss_pred ecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH--HHHHHHhcCCCE
Confidence 011112211110 00112233344444442 223556789999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+.
T Consensus 169 lllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 169 VLLDE----------PTSALDPISSSEIEETLMELKH-----QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred EEecC----------CCccCCHHHHHHHHHHHHHHHc-----CCeEEEEECCHHHHHhhcC
Confidence 99999 9999999999999999988742 3689999999987654443
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.60 E-value=8.7e-16 Score=159.30 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=111.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee-------------cccccch-h-------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV-------------SSLFVTS-K------------- 245 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~-------------~~~~~~~-~------------- 245 (741)
.+++++++ +.+| ++|+||||+|||||+++|+|.+.++.|++. +...... .
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 47788884 7788 889999999999999999999999888874 1000000 0
Q ss_pred h-----------HHHH-HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 246 E-----------DMAI-LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 246 ~-----------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
. ++.. +...........+++.+++.......+..+|||+++++ .+++|+..+|.++++||
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~~~p~illlDE------ 165 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV--AIAAALARDADFYFFDE------ 165 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEEC------
Confidence 0 0000 01111123445556666666556678889999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.++|++||+++.+..
T Consensus 166 ----Pts~LD~~~~~~l~~~l~~l~~----~~~tIIiiSHd~~~~~~ 204 (255)
T cd03236 166 ----PSSYLDIKQRLNAARLIRELAE----DDNYVLVVEHDLAVLDY 204 (255)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHh----cCCEEEEEECCHHHHHH
Confidence 9999999999999999988754 25689999999987653
No 316
>KOG1051|consensus
Probab=99.60 E-value=1.8e-13 Score=159.03 Aligned_cols=140 Identities=25% Similarity=0.399 Sum_probs=108.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechh------hhc---cccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSA------IVD---KYIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~------l~~---~~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
+...++|.||.|+|||-+|+++|..+ ...++.+++++ +.+ .|+|..+ ...+....+..+.||+|||
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfd 667 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFE 667 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEe
Confidence 45569999999999999999999988 35699999885 222 3666654 3477777888888999999
Q ss_pred ccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCC------CeEEEEeeCCC-------------------------
Q psy11254 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG------QVKMIMATNRP------------------------- 639 (741)
Q Consensus 591 E~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~------~v~vi~tTn~~------------------------- 639 (741)
|||. ++..+...+.++++...-.++.+ +++||||+|..
T Consensus 668 eIEk-----------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~ 736 (898)
T KOG1051|consen 668 EIEK-----------AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYR 736 (898)
T ss_pred chhh-----------cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhh
Confidence 9998 67788888999998776666554 68899998731
Q ss_pred ---------------CCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 640 ---------------DTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 640 ---------------~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
..+.|.|+. |+|..+.|-+.+.++..+|....+...
T Consensus 737 ~~k~~v~~~~~~~~~~~~r~Ef~n--rid~i~lf~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 737 LKKVQVSDAVRIYNKQFFRKEFLN--RIDELDLNLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred hhhhhhhhhhhcccccccChHHhc--ccceeeeecccchhhHhhhhhhHHHHH
Confidence 222344444 899999999999988888887766533
No 317
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=5.1e-16 Score=166.82 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=115.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------ 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------ 242 (741)
.++++++|++.+| ++|+|+||||||||+++|+|.+.+..+++......
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 5789999999999 88999999999999999999988776665432110
Q ss_pred -chhhHHHHHh-------hhhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 -TSKEDMAILM-------GNQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 -~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.....+.... ......++..+++.+++.. .....+..+|||+.|++ ++++|+..+|.+|++||
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv--~iArAL~~~P~lLilDE------ 180 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI--AIARALMLDPDVVVADE------ 180 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH--HHHHHHHcCCCEEEEEC------
Confidence 0000111100 0112344566777777753 35677889999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|...+..+.++|.++.. ..+.++|++||++..+..
T Consensus 181 ----Pts~LD~~~~~~i~~lL~~l~~---~~g~til~iTHdl~~~~~ 220 (327)
T PRK11308 181 ----PVSALDVSVQAQVLNLMMDLQQ---ELGLSYVFISHDLSVVEH 220 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHHHH
Confidence 9999999999999999988754 246799999999887653
No 318
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.7e-15 Score=145.53 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=119.9
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---hh-------------
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---KE------------- 246 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~~------------- 246 (741)
+++++....+.++++++++...| +.++||||+|||||+|+++|++.++.+++......-. ..
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s 84 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS 84 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence 35667788899999999999999 6799999999999999999999999888765422110 00
Q ss_pred ---------HHHHH---hh---h---hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc------CCeE
Q psy11254 247 ---------DMAIL---MG---N---QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH------QPCI 302 (741)
Q Consensus 247 ---------~~~~~---~~---~---~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~------~P~I 302 (741)
++-.+ +. . +..+.+..++...+......+....+|||.++++ .|+++++. ++.+
T Consensus 85 ~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRV--qlARvLaQl~~~v~~~r~ 162 (259)
T COG4559 85 SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV--QLARVLAQLWPPVPSGRW 162 (259)
T ss_pred ccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHH--HHHHHHHHccCCCCCCce
Confidence 11111 10 0 1122245566667777777788899999999999 89988863 3459
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
||||| |++++|...+...+.+..++.. .+..|+++-||.+.-
T Consensus 163 L~LDE----------PtsaLDi~HQ~~tl~laR~la~----~g~~V~~VLHDLNLA 204 (259)
T COG4559 163 LFLDE----------PTSALDIAHQHHTLRLARQLAR----EGGAVLAVLHDLNLA 204 (259)
T ss_pred EEecC----------CccccchHHHHHHHHHHHHHHh----cCCcEEEEEccchHH
Confidence 99999 9999999999999999998875 446789999988754
No 319
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.3e-15 Score=160.59 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=114.0
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------------cchh
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------------VTSK 245 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------------~~~~ 245 (741)
.+++++++++.+| ++|+||||+|||||+++|+|.+.+..+++..... ....
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 4789999999999 8899999999999999999999887766543110 0011
Q ss_pred hHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+++..... .....++..+++.+++.......+..+|||+++++ .|++|+..+|.+|++|| |+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~lAraL~~~p~llllDE----------Pt 168 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV--AVAGIIALRPEIIILDE----------ST 168 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------Cc
Confidence 12211110 01122344555666665555677889999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+++|+..+..+.+++.++.. ..+.++|++||+++.+.
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~---~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 169 SMLDPTGRQEIMRVIHEIKE---KYQLTVLSITHDLDEAA 205 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHH
Confidence 99999999999999988753 23679999999998874
No 320
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.60 E-value=1.1e-15 Score=157.55 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=105.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
..+++++++++++| ++|+||||+|||||+++|+|.+.+..+++...... +..+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 45889999999999 88999999999999999999998877766432110 0000
Q ss_pred HHHHHhhhhhhhcc---------ccccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRS---------THHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~---------~~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++............ ...++.+ ++.......+..+|||+++++ .|++|+..+|++|++||
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral~~~p~llllDE-------- 164 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI--AIARALIHNPRILIFDE-------- 164 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH--HHHHHHhhCCCEEEEeC--------
Confidence 11000000000000 0111111 122222445688999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.+||++||+++.+.
T Consensus 165 --P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~~ 201 (237)
T cd03252 165 --ATSALDYESEHAIMRNMHDICA-----GRTVIIIAHRLSTVK 201 (237)
T ss_pred --CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEeCCHHHHH
Confidence 9999999999999999988742 568999999998764
No 321
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.60 E-value=1.1e-15 Score=156.19 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=112.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc--c---ccc-----------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS--L---FVT----------------------- 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~--~---~~~----------------------- 243 (741)
..++++++|++.+| ++|+||||+|||||+++|+|.+.+..+++... . ...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 35899999999999 88999999999999999999998877766532 0 000
Q ss_pred ------hhhHHHHH-h--h---hhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 244 ------SKEDMAIL-M--G---NQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 244 ------~~~~~~~~-~--~---~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
..+.+... . + .....++..+++.+++... ....+..+|||+++++ .|++|+..+|.+|++||
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE--- 175 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV--NIARGFIADYPILLLDE--- 175 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEcC---
Confidence 00011110 0 0 0112233445566666542 3557889999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..++.+.+++..+.. .+.++|++||+++.+.
T Consensus 176 -------Pt~~LD~~~~~~l~~~l~~~~~----~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 176 -------PTASLDAANRQVVVELIAEAKA----RGAALIGIFHDEEVRE 213 (224)
T ss_pred -------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHH
Confidence 9999999999999999998753 3578999999987664
No 322
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=6.3e-16 Score=162.28 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=109.7
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeecccc---------------------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLF--------------------- 241 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~--------------------- 241 (741)
.+.+..++++++|++.+| ++|+||||+|||||+++|+|... +..+++.....
T Consensus 30 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 109 (268)
T PRK14248 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109 (268)
T ss_pred EeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec
Confidence 344456889999999999 78999999999999999999753 34454432110
Q ss_pred ----c--chhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ----V--TSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ----~--~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
. ...+++.... + ......+...++.+++. ......+..+|||+++++ .+++|+..+|.+|+
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl--~laral~~~p~lll 187 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL--CIARTLAMKPAVLL 187 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH--HHHHHHhCCCCEEE
Confidence 0 0011111110 0 00111222233333332 123456788999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.+
T Consensus 188 LDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 188 LDE----------PASALDPISNAKIEELITELKE-----EYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred EcC----------CCcccCHHHHHHHHHHHHHHhc-----CCEEEEEEeCHHHHHHhCCE
Confidence 999 9999999999999999998853 35899999999877644433
No 323
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.59 E-value=4.6e-16 Score=155.93 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=104.6
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeecccccchhhHHHHHhhhhhhhccccccc
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLE 265 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (741)
.+.+..++++++|++.+| ++|+||||+|||||+++|+|.. .+..+++............... ...++....+
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~----~~~~i~~v~q 84 (200)
T cd03217 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER----ARLGIFLAFQ 84 (200)
T ss_pred EeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH----hhCcEEEeec
Confidence 344456899999999999 8899999999999999999984 5777776543211000000000 0001111111
Q ss_pred cccc-C-----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 266 KTYF-P-----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 266 ~~~~-~-----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
...+ + .........+|||+.+++ .+++|+..+|.+|++|| |++++|+..+..+.+++.++..
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~LS~G~~qrv--~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~~~ 152 (200)
T cd03217 85 YPPEIPGVKNADFLRYVNEGFSGGEKKRN--EILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKLRE 152 (200)
T ss_pred ChhhccCccHHHHHhhccccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH
Confidence 1100 0 000122357999999999 99999999999999999 9999999999999999988753
Q ss_pred CCCCCCeEEEEeeCCCCCCC
Q psy11254 340 FDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~ld 359 (741)
.+.++|++||+++.+.
T Consensus 153 ----~~~tiii~sh~~~~~~ 168 (200)
T cd03217 153 ----EGKSVLIITHYQRLLD 168 (200)
T ss_pred ----CCCEEEEEecCHHHHH
Confidence 2568999999988665
No 324
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1e-15 Score=159.17 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=111.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeecccc--------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLF-------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~-------------------- 241 (741)
+.+..+.++++++|++.+| ++|+||||||||||+++|+|... +..+++.....
T Consensus 13 ~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 92 (251)
T PRK14244 13 LWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVF 92 (251)
T ss_pred EEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEe
Confidence 3344456889999999999 78999999999999999999875 23555432110
Q ss_pred -----c--chhhHHHHHh---h-----hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 -----V--TSKEDMAILM---G-----NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 -----~--~~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
+ ...+++.... + ......+..+++.+++.. .....+..+|||+++++ ++++|+..+|++
T Consensus 93 q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~laral~~~p~l 170 (251)
T PRK14244 93 QKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL--CIARAIAVKPTM 170 (251)
T ss_pred cCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH--HHHHHHhcCCCE
Confidence 0 0011111110 0 011122334455555532 23456788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+.
T Consensus 171 lllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 171 LLMDE----------PCSALDPVATNVIENLIQELKK-----NFTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred EEEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHhhcC
Confidence 99999 9999999999999999988742 4689999999987764333
No 325
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.9e-16 Score=160.53 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=113.2
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--C---Cceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--A---NFLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~---~~~~v~~~~~------------------- 241 (741)
.+.+.+..+++++++++++| ++|+||||||||||+++|+|.+. + +.+++.....
T Consensus 11 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~ 90 (252)
T PRK14256 11 NVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMV 90 (252)
T ss_pred EEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEE
Confidence 34444556899999999999 88999999999999999999875 2 2444432110
Q ss_pred ---------cchhhHHHHHh---h----hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ---------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ---------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
.+..+++.... + ....+++...++.+++.. .....+..+|||+.+++ ++++|+..+|.
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl--~laral~~~p~ 168 (252)
T PRK14256 91 FQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL--CIARTIAVKPE 168 (252)
T ss_pred ecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH--HHHHHHhcCCC
Confidence 01111221110 0 111223334444455422 23456788999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.+
T Consensus 169 llllDE----------P~~gLD~~~~~~l~~~l~~~~~-----~~tiiivsH~~~~~~~~~d~ 216 (252)
T PRK14256 169 VILMDE----------PASALDPISTLKIEELIEELKE-----KYTIIIVTHNMQQAARVSDY 216 (252)
T ss_pred EEEEcC----------CcccCCHHHHHHHHHHHHHHHh-----CCcEEEEECCHHHHHhhCCE
Confidence 999999 9999999999999999998853 25899999999887654444
No 326
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=8.9e-16 Score=143.93 Aligned_cols=145 Identities=14% Similarity=0.277 Sum_probs=113.3
Q ss_pred hCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHHHHh-
Q psy11254 200 VGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMAILM- 252 (741)
Q Consensus 200 ~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~~~~- 252 (741)
+++.++.| +.++||+|+|||||++.|||...|..+.+..... ++...+++.-.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence 34566777 8899999999999999999999998888764321 11111111100
Q ss_pred -----hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 253 -----GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 253 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
...-+.++...+..+|+.....+++.++|||++|++ ++++++...-.|++||| |.+.+||..+
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv--ALARclvR~~PilLLDE----------PFsALdP~LR 165 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV--ALARCLVREQPILLLDE----------PFSALDPALR 165 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH--HHHHHHhccCCeEEecC----------chhhcCHHHH
Confidence 012244566777788888888999999999999999 99999987766999999 9999999999
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 328 RTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 328 ~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
..+..++..+.. ..+.+++++||.++++-
T Consensus 166 ~eMl~Lv~~l~~---E~~~TllmVTH~~~Da~ 194 (231)
T COG3840 166 AEMLALVSQLCD---ERKMTLLMVTHHPEDAA 194 (231)
T ss_pred HHHHHHHHHHHH---hhCCEEEEEeCCHHHHH
Confidence 999999988764 56789999999998764
No 327
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.1e-15 Score=157.63 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=118.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-CCceeeecccccchh-------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-ANFLKVVSSLFVTSK------------------------- 245 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-~~~~~v~~~~~~~~~------------------------- 245 (741)
-.++++++|++.+| +.|+|.+||||||++++|.+.+. ++..-+++...+.+.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 35788999999999 77999999999999999999997 322222222111111
Q ss_pred -----------hHHHHH-hhh-------hhhhcccccccccccCCC---ccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 246 -----------EDMAIL-MGN-------QLKRRSTHHLEKTYFPFY---SSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 246 -----------~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
..+.+. ..| +..+++...++.++++.. ...+..++|||+.||+ +++.|++.+|++|
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV--~IAmala~~P~Ll 175 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV--MIAMALALNPKLL 175 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH--HHHHHHhCCCCEE
Confidence 011111 111 123467788888888753 4678889999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+.|| ||+++|...+..++++|.++.. ..+.++|++|||+..+...+.|
T Consensus 176 IADE----------PTTALDvt~QaqIl~Ll~~l~~---e~~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 176 IADE----------PTTALDVTVQAQILDLLKELQR---EKGTALILITHDLGVVAEIADR 223 (316)
T ss_pred EeCC----------CcchhhHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhcce
Confidence 9999 9999999999999999999886 4678999999999876654443
No 328
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=4.3e-15 Score=138.76 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=124.7
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
.+...|+.-++++++++...+| +-++|.+|+||||++|||.-.-.|..+.+.....
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 3455688889999999999999 6699999999999999999877777666643211
Q ss_pred -----------------cchhhHHHHH-------hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh
Q psy11254 242 -----------------VTSKEDMAIL-------MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN 297 (741)
Q Consensus 242 -----------------~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~ 297 (741)
.+..+++.+. ..++...++...+...|+.......+..+|||+++++ ++++|++
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~--aIARaLa 168 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV--AIARALA 168 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH--HHHHHHh
Confidence 0000111111 1224456777888889988888888999999999988 9999999
Q ss_pred cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 298 ~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.+|.++++|| ||+.+||+..-.++..+..+.. .+.+++++||.+.+..
T Consensus 169 meP~vmLFDE----------PTSALDPElVgEVLkv~~~LAe----EgrTMv~VTHEM~FAR 216 (256)
T COG4598 169 MEPEVMLFDE----------PTSALDPELVGEVLKVMQDLAE----EGRTMVVVTHEMGFAR 216 (256)
T ss_pred cCCceEeecC----------CcccCCHHHHHHHHHHHHHHHH----hCCeEEEEeeehhHHH
Confidence 9999999999 9999999998888888888765 5668999999887654
No 329
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.59 E-value=1.3e-15 Score=158.50 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=108.9
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHh--cCCCceeeecccc-----------------c------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQ--LDANFLKVVSSLF-----------------V------ 242 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~--l~~~~~~v~~~~~-----------------~------ 242 (741)
.+.+..++++++|++.+| ++|+||||||||||+++|+|. +.+..+++..... .
T Consensus 16 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~ 95 (252)
T CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIE 95 (252)
T ss_pred EeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccc
Confidence 344456899999999999 789999999999999999997 3455554432100 0
Q ss_pred ----chhhHHHHHhhh-------------hhhhcccccccccccC-CCccchhh-hhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 ----TSKEDMAILMGN-------------QLKRRSTHHLEKTYFP-FYSSAIVD-KYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 ----~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~-~~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
.....+...... ....++...++.+++. ......+. .+|||+.+++ .+++|+..+|.||
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv--~la~al~~~p~ll 173 (252)
T CHL00131 96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN--EILQMALLDSELA 173 (252)
T ss_pred cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH--HHHHHHHcCCCEE
Confidence 000111110000 0112233445555654 23344555 5999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++|| |++++|+..+..+.+++.++.. .+.+||++||+++.+.
T Consensus 174 llDE----------Pt~~LD~~~~~~l~~~l~~~~~----~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 174 ILDE----------TDSGLDIDALKIIAEGINKLMT----SENSIILITHYQRLLD 215 (252)
T ss_pred EEcC----------CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHH
Confidence 9999 9999999999999999988753 3568999999998664
No 330
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=159.71 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=113.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~------------------- 241 (741)
.+.+.+..+++++++++.+| ++|+||||+|||||+++|+|.+.++ .+++.....
T Consensus 14 ~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 93 (259)
T PRK14260 14 SFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMV 93 (259)
T ss_pred EEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEE
Confidence 34444556899999999999 8899999999999999999987642 344432110
Q ss_pred --------cchhhHHHHHh-------hhhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILM-------GNQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++.... ......++...++.+++. ......+..+|||+.+++ +|++|+..+|++
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~l 171 (259)
T PRK14260 94 FQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL--CIARALAIKPKV 171 (259)
T ss_pred ecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH--HHHHHHhcCCCE
Confidence 00111111110 001112233344444432 234566788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.+
T Consensus 172 llLDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 172 LLMDE----------PCSALDPIATMKVEELIHSLRS-----ELTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred EEEcC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhcCe
Confidence 99999 9999999999999999988753 36999999999987654443
No 331
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.59 E-value=1e-15 Score=158.86 Aligned_cols=156 Identities=14% Similarity=0.193 Sum_probs=107.1
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeecccccc-h--------------hhH-
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFVT-S--------------KED- 247 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~~-~--------------~~~- 247 (741)
.+.+.+..+++++++.+.+| ++|+||||||||||+++|+|.. .+..+++....... . ..+
T Consensus 8 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (248)
T PRK09580 8 HVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYP 87 (248)
T ss_pred EEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCc
Confidence 33444556899999999999 7899999999999999999985 46666554321000 0 000
Q ss_pred --------HHH---Hhhh-------------hhhhcccccccccccC-CCccchhh-hhcchHHHHHHHHHHHHHhcCCe
Q psy11254 248 --------MAI---LMGN-------------QLKRRSTHHLEKTYFP-FYSSAIVD-KYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 248 --------~~~---~~~~-------------~~~~~~~~~l~~~~~~-~~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
... .... ....++...++.++++ ......+. .+|||+++++ ++++|+..+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~ 165 (248)
T PRK09580 88 VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN--DILQMAVLEPE 165 (248)
T ss_pred hhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH--HHHHHHHcCCC
Confidence 000 0000 0011112222333332 11223343 7999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
||++|| |++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 166 illLDE----------Pt~~LD~~~~~~l~~~l~~l~~----~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 166 LCILDE----------SDSGLDIDALKIVADGVNSLRD----GKRSFIIVTHYQRILD 209 (248)
T ss_pred EEEEeC----------CCccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH
Confidence 999999 9999999999999999988753 3568999999988765
No 332
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=7.8e-16 Score=148.15 Aligned_cols=136 Identities=24% Similarity=0.346 Sum_probs=102.8
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccc
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (741)
+....+++++++++++| ++|+||||+|||||+++|+|.+.+..+++............ ....+.
T Consensus 9 ~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~-----~~~~~~--------- 74 (157)
T cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL-----EELRRR--------- 74 (157)
T ss_pred eCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH-----HHHHhc---------
Confidence 33446889999999998 78999999999999999999998887777643211000000 000000
Q ss_pred cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEE
Q psy11254 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKM 348 (741)
Q Consensus 269 ~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~v 348 (741)
-..+.++|||+.+++ .+++|+..+|.++++|| |++++|...+..+.+++..+.. .+.++
T Consensus 75 -----i~~~~qlS~G~~~r~--~l~~~l~~~~~i~ilDE----------p~~~lD~~~~~~l~~~l~~~~~----~~~ti 133 (157)
T cd00267 75 -----IGYVPQLSGGQRQRV--ALARALLLNPDLLLLDE----------PTSGLDPASRERLLELLRELAE----EGRTV 133 (157)
T ss_pred -----eEEEeeCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHH----CCCEE
Confidence 011122899999988 99999999999999999 9999999999999999988754 24689
Q ss_pred EEeeCCCCCCCcc
Q psy11254 349 IMATNRPDTLDPA 361 (741)
Q Consensus 349 I~at~~~~~ld~a 361 (741)
|++||+++++...
T Consensus 134 i~~sh~~~~~~~~ 146 (157)
T cd00267 134 IIVTHDPELAELA 146 (157)
T ss_pred EEEeCCHHHHHHh
Confidence 9999999887644
No 333
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=158.81 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=110.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF------------------ 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~------------------ 241 (741)
+.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+ ..+++.....
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 88 (250)
T PRK14240 9 LDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGM 88 (250)
T ss_pred EEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEE
Confidence 334444556899999999999 789999999999999999997652 2444432110
Q ss_pred ---------cchhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ---------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ---------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
....+++..... .....++...++..++. ......+..+|||+.+++ +|++|+..+|.
T Consensus 89 ~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~ 166 (250)
T PRK14240 89 VFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL--CIARALAVEPE 166 (250)
T ss_pred EecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH--HHHHHHhcCCC
Confidence 001111111100 01112222233333321 123456788999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 167 llllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 167 VLLMDE----------PTSALDPISTLKIEELIQELKK-----DYTIVIVTHNMQQASRISD 213 (250)
T ss_pred EEEEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEEeCHHHHHhhCC
Confidence 999999 9999999999999999988742 3589999999987654443
No 334
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=4.5e-15 Score=176.97 Aligned_cols=139 Identities=32% Similarity=0.499 Sum_probs=108.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhh---------hccccchHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI---------VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 595 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l---------~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~ 595 (741)
..++|+||||||||++|+++|+.++.+++.++.+.+ ...|+|.....+...|..+...+| |+||||+|.+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~ 426 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKI 426 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhc
Confidence 469999999999999999999999999998875543 236788877788888888876666 8899999998
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHH------ccCC----CCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLNQ------MDGF----DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA 665 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~~------~~g~----~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~ 665 (741)
.... ..+ ....+.++|+. .|.+ -...++++|+|||.++.+++++++ ||+ +|+|+.|+.++
T Consensus 427 ~~~~-----~~~--~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e 496 (775)
T TIGR00763 427 GSSF-----RGD--PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEE 496 (775)
T ss_pred CCcc-----CCC--HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHH
Confidence 7432 112 23445555442 1111 112478999999999999999998 996 78999999999
Q ss_pred HHHHHHHhh
Q psy11254 666 RLEILKIHA 674 (741)
Q Consensus 666 r~~i~~~~~ 674 (741)
+.+|++.++
T Consensus 497 ~~~I~~~~l 505 (775)
T TIGR00763 497 KLEIAKKYL 505 (775)
T ss_pred HHHHHHHHH
Confidence 999999887
No 335
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.3e-15 Score=174.38 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=115.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-Cceeeecccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-NFLKVVSSLF----------------------------- 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-~~~~v~~~~~----------------------------- 241 (741)
..++++++|++++| ++|+||||+|||||+|+|+|.+.+ +.|++.....
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 45899999999999 789999999999999999999873 5565543110
Q ss_pred -cchhhHHHHHh--h---------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 242 -VTSKEDMAILM--G---------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 242 -~~~~~~~~~~~--~---------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
.+..+++.... . .....++..+++.+++. ......+..+|||+++++ .|++|+..+|.||||||
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv--~lA~al~~~p~lllLDE- 431 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA--VLAKCLLLNPKILILDE- 431 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH--HHHHHHhhCCCEEEEcC-
Confidence 00011111100 0 00112344566667775 356778899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 432 ---------Pt~~LD~~~~~~l~~~l~~l~~----~g~tvi~~sHd~~~~~~~~ 472 (506)
T PRK13549 432 ---------PTRGIDVGAKYEIYKLINQLVQ----QGVAIIVISSELPEVLGLS 472 (506)
T ss_pred ---------CCCCcCHhHHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHhC
Confidence 9999999999999999998764 3678999999998776433
No 336
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-15 Score=159.51 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=109.9
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc--------------------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV-------------------- 242 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~-------------------- 242 (741)
.+....++++++|++++| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 21 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 100 (259)
T PRK14274 21 WYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQ 100 (259)
T ss_pred EECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEec
Confidence 344456889999999999 889999999999999999998862 24544321100
Q ss_pred -------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 243 -------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 243 -------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
...+++..... .....++..+++.+++. ......+..+|||+.+++ .+++|+..+|.|++
T Consensus 101 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv--~laral~~~p~lll 178 (259)
T PRK14274 101 KGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL--CIARALATNPDVLL 178 (259)
T ss_pred CCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 00111111100 00112223334444442 123556788999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+
T Consensus 179 lDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiiivtH~~~~~~~~~ 221 (259)
T PRK14274 179 MDE----------PTSALDPVSTRKIEELILKLKE-----KYTIVIVTHNMQQAARVS 221 (259)
T ss_pred EcC----------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEEcCHHHHHHhC
Confidence 999 9999999999999999998742 368999999998765433
No 337
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=9.7e-16 Score=162.13 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=110.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--C---Cceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--A---NFLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~---~~~~v~~~~~~------------------ 242 (741)
.+.+....++++++|++..| ++|+||||+|||||+++|+|... + ..+++......
T Consensus 46 ~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 125 (286)
T PRK14275 46 SIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMV 125 (286)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEE
Confidence 34444456889999999999 78999999999999999999753 2 45554321100
Q ss_pred ---------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 ---------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 ---------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
...+++..... .....++..+++.+++. ......+..+|||+.+++ +|++|+..+|.+
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~LAraL~~~p~l 203 (286)
T PRK14275 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL--CVARTLAVEPEI 203 (286)
T ss_pred CCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH--HHHHHHhcCCCE
Confidence 00111111100 00111222333333331 233556789999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.
T Consensus 204 llLDE----------Pt~gLD~~~~~~l~~~L~~~~~-----~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 204 LLLDE----------PTSALDPKATAKIEDLIQELRG-----SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred EEEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHhCC
Confidence 99999 9999999999999999988753 3589999999988754333
No 338
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-15 Score=158.24 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=111.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC---C--Cceeeecccc--------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD---A--NFLKVVSSLF-------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~---~--~~~~v~~~~~-------------------- 241 (741)
+.+....++++++|++.+| ++|+||||+|||||+++|+|..+ + ..|++.....
T Consensus 11 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 90 (250)
T PRK14245 11 FWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVF 90 (250)
T ss_pred EEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEe
Confidence 3344456889999999999 88999999999999999999632 2 2354422110
Q ss_pred -------cchhhHHHHHhh-------hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 242 -------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 242 -------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
.+..+++..... .....++..+++.+++.. .....+..+|||+.+++ ++++|+..+|++|
T Consensus 91 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~ll 168 (250)
T PRK14245 91 QRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL--CIARAMAVSPSVL 168 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH--HHHHHHhcCCCEE
Confidence 011112221110 011123344455555432 23566788999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 169 lLDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiiivtH~~~~~~~~~d 213 (250)
T PRK14245 169 LMDE----------PASALDPISTAKVEELIHELKK-----DYTIVIVTHNMQQAARVSD 213 (250)
T ss_pred EEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHhhCC
Confidence 9999 9999999999999999998742 3689999999987754443
No 339
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-15 Score=161.54 Aligned_cols=156 Identities=14% Similarity=0.190 Sum_probs=112.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~------------------- 241 (741)
.+.+.+..++++++|.+.+| ++|+||||||||||+++|+|.+. +..+++.....
T Consensus 46 ~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v 125 (285)
T PRK14254 46 NVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMV 125 (285)
T ss_pred EEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEE
Confidence 34444556899999999999 78999999999999999999975 34454432110
Q ss_pred ------c--chhhHHHHHhh-----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ------V--TSKEDMAILMG-----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ------~--~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
+ ...+++..... .....++..+++.+++. ......+..+|||+++++ +|++|+..+|.||+
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv--~LAraL~~~p~lLL 203 (285)
T PRK14254 126 FQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL--CIARAIAPDPEVIL 203 (285)
T ss_pred ecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH--HHHHHHHcCCCEEE
Confidence 0 01111211100 01122334445555542 123556789999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+|| |++++|+..+..+.+++..+.. +.+||++||+++.+..
T Consensus 204 LDE----------Pts~LD~~~~~~l~~~L~~~~~-----~~tiii~tH~~~~i~~ 244 (285)
T PRK14254 204 MDE----------PASALDPVATSKIEDLIEELAE-----EYTVVIVTHNMQQAAR 244 (285)
T ss_pred EeC----------CCCCCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHh
Confidence 999 9999999999999999998853 2589999999887653
No 340
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.5e-15 Score=158.90 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=109.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------ 242 (741)
.+.+.+..+++++++++++| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 17 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 96 (264)
T PRK14243 17 NVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMV 96 (264)
T ss_pred EEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEE
Confidence 34444556889999999999 789999999999999999998752 34544321100
Q ss_pred ---------chhhHHHHHhh-----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 243 ---------TSKEDMAILMG-----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 243 ---------~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
+..+++..... .....++...++..++. ......+..+|||+.+++ +|++|+..+|++|+
T Consensus 97 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~laral~~~p~lll 174 (264)
T PRK14243 97 FQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL--CIARAIAVQPEVIL 174 (264)
T ss_pred ccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 00111111000 00111122222333321 123456778999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.
T Consensus 175 LDE----------Pt~~LD~~~~~~l~~~L~~~~~-----~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 175 MDE----------PCSALDPISTLRIEELMHELKE-----QYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred EeC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHHHHHhCC
Confidence 999 9999999999999999998753 2589999999988765443
No 341
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.4e-15 Score=138.62 Aligned_cols=164 Identities=19% Similarity=0.165 Sum_probs=126.1
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-ccch-----------------
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-FVTS----------------- 244 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-~~~~----------------- 244 (741)
+.+....+...+|.+++|.+..| +.+.||||+|||||+|+|||.+.|..++|.... ....
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g 85 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG 85 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcccc
Confidence 34555567778999999999999 669999999999999999999999998886541 1111
Q ss_pred -------hhHHHHHhh---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 245 -------KEDMAILMG---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 245 -------~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+++.+... ..-...+..+++.+++....+-++..+|-|+++++ ++++.....+.+-+|||
T Consensus 86 iK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRv--AlArL~ls~~pLWiLDE------- 156 (209)
T COG4133 86 IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRV--ALARLWLSPAPLWILDE------- 156 (209)
T ss_pred ccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHH--HHHHHHcCCCCceeecC-------
Confidence 111111111 11123455667777887778889999999999999 99999998888999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++.+|.+....|..++..--. .+-.||++||.+-.++++-.+
T Consensus 157 ---P~taLDk~g~a~l~~l~~~H~~----~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 157 ---PFTALDKEGVALLTALMAAHAA----QGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred ---cccccCHHHHHHHHHHHHHHhc----CCCEEEEecCCccCCCccceE
Confidence 9999999999999998876543 344799999999888766555
No 342
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-15 Score=159.71 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=111.6
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc---------------------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF--------------------- 241 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~--------------------- 241 (741)
.+..+.++++++|++.+| ++|+||||||||||+++|+|.+.+ ..+++.....
T Consensus 29 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 108 (267)
T PRK14237 29 YYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ 108 (267)
T ss_pred EECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEec
Confidence 344556899999999999 889999999999999999998853 4554432110
Q ss_pred ------cchhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 242 ------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 242 ------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
.+..+++.... + .....++...++..++. ......+..+|||+.+++ ++++|+..+|.+|+
T Consensus 109 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl--~laral~~~p~lll 186 (267)
T PRK14237 109 RPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL--CIARAIAVKPDILL 186 (267)
T ss_pred CCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 00111121110 0 01112222334444432 223556788999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
+|| |++++|+.....+.+++..+.. +.++|++||+++.+...+.+
T Consensus 187 LDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiii~tH~~~~~~~~~d~ 231 (267)
T PRK14237 187 MDE----------PASALDPISTMQLEETMFELKK-----NYTIIIVTHNMQQAARASDY 231 (267)
T ss_pred EeC----------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHHHHHhcCE
Confidence 999 9999999999999999988742 36899999999877554443
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=8e-16 Score=152.20 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhc--cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------
Q psy11254 178 EQIRELREVIEL--PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------ 241 (741)
Q Consensus 178 ~~k~~i~e~i~~--~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------ 241 (741)
..++++...+.- ......++++++|++.+| +.|+|+||+|||||+|.|||.+.|+.+++....-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~ 101 (249)
T COG1134 22 SLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD 101 (249)
T ss_pred hHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC
Confidence 444455444421 123345789999999999 8899999999999999999999999888865432
Q ss_pred --cchhhHHHH---Hh---hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 242 --VTSKEDMAI---LM---GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 242 --~~~~~~~~~---~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+++.+++.. +. ..+.+.+.....+...+....+.++..||.|+..|+ +|+.|...+|+||++||
T Consensus 102 pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRL--aFsia~~~~pdILllDE------ 173 (249)
T COG1134 102 PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARL--AFSVATHVEPDILLLDE------ 173 (249)
T ss_pred cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHH--HHhhhhhcCCCEEEEeh------
Confidence 223333332 12 345556666666666667777889999999999988 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCcc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRL 368 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~ 368 (741)
-.+-.|+..++.-.+.+.++.. .+.++|++||+++.+-..|.|.-.+
T Consensus 174 ----vlavGD~~F~~K~~~rl~e~~~----~~~tiv~VSHd~~~I~~~Cd~~i~l 220 (249)
T COG1134 174 ----VLAVGDAAFQEKCLERLNELVE----KNKTIVLVSHDLGAIKQYCDRAIWL 220 (249)
T ss_pred ----hhhcCCHHHHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhcCeeEEE
Confidence 4455677777776777777632 2469999999999998877764444
No 344
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.6e-15 Score=157.58 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=110.6
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~~------------------ 242 (741)
.+.+.++.++++++|++.+| ++|+||||+|||||+++|+|...+. .+++......
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 89 (249)
T PRK14253 10 DLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVF 89 (249)
T ss_pred EEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEe
Confidence 34444556899999999999 7899999999999999999988752 4544321100
Q ss_pred --------chhhHHHHHhh-h------hhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 --------TSKEDMAILMG-N------QLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 --------~~~~~~~~~~~-~------~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
+..+++..... . ...+++...++..++. ......+..+|||+.+++ .|++|+..+|.||
T Consensus 90 q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~ll 167 (249)
T PRK14253 90 QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL--CIARTIAMEPDVI 167 (249)
T ss_pred cCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH--HHHHHHHcCCCEE
Confidence 00111111100 0 0011122223333332 123456678999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 168 llDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 168 LMDE----------PTSALDPIATHKIEELMEELKK-----NYTIVIVTHSMQQARRISD 212 (249)
T ss_pred EEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEecCHHHHHHhCC
Confidence 9999 9999999999999999998853 3689999999987664443
No 345
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.6e-15 Score=157.60 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=109.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------ 242 (741)
.+.+.++.++++++|++.+| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 10 ~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~ 89 (250)
T PRK14262 10 SAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89 (250)
T ss_pred EEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEE
Confidence 33444556899999999999 789999999999999999998763 44544321100
Q ss_pred ---------chhhHHHHHhhh-------hhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 ---------TSKEDMAILMGN-------QLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 ---------~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
...+++...... .....+...++.+++.. .....+..+|||+.+++ ++++|+..+|.+
T Consensus 90 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~--~la~al~~~p~l 167 (250)
T PRK14262 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL--CIARALAVEPEV 167 (250)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH--HHHHHHhCCCCE
Confidence 001111111000 01111222333334321 23556788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++|| |++++|+..+..+.+++.++.. +.++|++||+++.+..
T Consensus 168 lllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tili~sH~~~~~~~ 210 (250)
T PRK14262 168 ILLDE----------PTSALDPIATQRIEKLLEELSE-----NYTIVIVTHNIGQAIR 210 (250)
T ss_pred EEEeC----------CccccCHHHHHHHHHHHHHHhc-----CcEEEEEeCCHHHHHH
Confidence 99999 9999999999999999988742 3589999999986654
No 346
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-15 Score=158.74 Aligned_cols=161 Identities=15% Similarity=0.284 Sum_probs=116.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee--cccc---------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV--SSLF--------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~--~~~~--------------------- 241 (741)
+.+.++++.++++++|.+.+| ++|+||||+|||||+++|+|...+..+++. +...
T Consensus 16 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~ 95 (257)
T PRK14246 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMV 95 (257)
T ss_pred EEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEE
Confidence 445567778999999999999 889999999999999999999877654321 1000
Q ss_pred ---------cchhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ---------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ---------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
.+..+++.... + .....++...++.+++. ......+..+|||+++++ ++++|+..+|.
T Consensus 96 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl--~laral~~~P~ 173 (257)
T PRK14246 96 FQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL--TIARALALKPK 173 (257)
T ss_pred ccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH--HHHHHHHcCCC
Confidence 01111222110 0 01112334444555553 223456788999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++++|| |++++|...+..+.+++.++.. +.++|++||+++.+...+.+
T Consensus 174 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 174 VLLMDE----------PTSMIDIVNSQAIEKLITELKN-----EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred EEEEcC----------CCccCCHHHHHHHHHHHHHHhc-----CcEEEEEECCHHHHHHhCCE
Confidence 999999 9999999999999999988743 36999999999877654443
No 347
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.58 E-value=2.4e-15 Score=152.19 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee-ccc-c------------cchhhHHHHHhhh-hh-h
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV-SSL-F------------VTSKEDMAILMGN-QL-K 257 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~-~~~-~------------~~~~~~~~~~~~~-~~-~ 257 (741)
+++++++.+++| ++|+||||+|||||+|+|+|.+.+..|++. ... . .+..+++...... .. .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 467889999999 779999999999999999999988877764 111 0 1112233222110 00 0
Q ss_pred hccc-ccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHh
Q psy11254 258 RRST-HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 336 (741)
Q Consensus 258 ~~~~-~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~ 336 (741)
.... ...+..++.......+..+|||+++++ .|++|+..+|.++++|| |++++|+..+..+.+++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv--~la~al~~~p~llllDE----------P~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHL--AFAINLLLPCRLYIADG----------KLYTGDNATQLRMQAALAC 149 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHH--HHHHHHhcCCCEEEECC----------CCccCCHHHHHHHHHHHHH
Confidence 1111 111223344444667889999999999 99999999999999999 9999999999988887643
Q ss_pred -ccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 337 -MDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 337 -l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+.+ .++|++||+++.+...+
T Consensus 150 ~~~~------~~ii~vsH~~~~~~~~~ 170 (213)
T PRK15177 150 QLQQ------KGLIVLTHNPRLIKEHC 170 (213)
T ss_pred HhhC------CcEEEEECCHHHHHHhc
Confidence 332 25899999998775433
No 348
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.6e-15 Score=157.89 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=111.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF------------------ 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~------------------ 241 (741)
+.+.+.+..++++++|++.+| ++|+||||+|||||+++|+|.+.+. .+++.....
T Consensus 10 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 89 (252)
T PRK14272 10 VNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGM 89 (252)
T ss_pred eEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEE
Confidence 334444566899999999999 7799999999999999999998653 344432110
Q ss_pred ----------cchhhHHHHHhhh-------hhhhccccccccccc----CCCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 242 ----------VTSKEDMAILMGN-------QLKRRSTHHLEKTYF----PFYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 242 ----------~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~----~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
.+..+++...... ...+++...++..++ .......+..+|||+.+++ +|++|+..+|
T Consensus 90 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p 167 (252)
T PRK14272 90 VFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL--CIARALAVEP 167 (252)
T ss_pred EeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH--HHHHHHhcCC
Confidence 0111122111100 001111122222221 1223556788999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
.||++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+.+
T Consensus 168 ~llllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 168 EILLMDE----------PTSALDPASTARIEDLMTDLKK-----VTTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred CEEEEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHhCCE
Confidence 9999999 9999999999999999988752 36899999999987654443
No 349
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.58 E-value=1e-15 Score=164.70 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=112.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC---ceeeeccccc--------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN---FLKVVSSLFV-------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~---~~~v~~~~~~-------------------------- 242 (741)
..++++++|++.+| ++|+|+||||||||+++|+|.+.+. .|++......
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 45789999999999 8899999999999999999999774 5554321100
Q ss_pred ------chhhHHHHHh-h------hhhhhcccccccccccCCC---ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 ------TSKEDMAILM-G------NQLKRRSTHHLEKTYFPFY---SSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ------~~~~~~~~~~-~------~~~~~~~~~~l~~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
.....+.... . .....++..+++.+++... ....+.++|||+.|++ ++++|+..+|.+|++|
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv--~IArAL~~~P~llilD 186 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV--MIAMALLCRPKLLIAD 186 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEe
Confidence 0011111100 0 1112344556666666532 2457788999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
| |++++|...+..+.+++..+.. ..+.++|++||+++.+..
T Consensus 187 E----------Pts~LD~~~~~~i~~lL~~l~~---~~g~til~iTHdl~~~~~ 227 (330)
T PRK09473 187 E----------PTTALDVTVQAQIMTLLNELKR---EFNTAIIMITHDLGVVAG 227 (330)
T ss_pred C----------CCccCCHHHHHHHHHHHHHHHH---HcCCEEEEEECCHHHHHH
Confidence 9 9999999999999999988854 246799999999987653
No 350
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=2.4e-15 Score=153.34 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=105.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh---hH----HHHHhhh------h---
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK---ED----MAILMGN------Q--- 255 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~---~~----~~~~~~~------~--- 255 (741)
..++++++|++++| ++|+||||+|||||+++|+|...+..+++......... .. +++..++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 35899999999999 78999999999999999999998877766432110000 00 0000000 0
Q ss_pred --------hhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 256 --------LKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 256 --------~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
...++...++..++ .......+..+|||+.+++ .|++|+..+|.+|++||
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~--~laral~~~p~llllDE--------- 165 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL--CLARALLRKSKILVLDE--------- 165 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 00011111111221 1112346778999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++.++.. +.++|++||+++.+.
T Consensus 166 -P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~~ 202 (221)
T cd03244 166 -ATASVDPETDALIQKTIREAFK-----DCTVLTIAHRLDTII 202 (221)
T ss_pred -ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEeCCHHHHh
Confidence 9999999999999999988742 358999999998775
No 351
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=1.5e-15 Score=167.61 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=124.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc---ch------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---TS------------------------ 244 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---~~------------------------ 244 (741)
...+++++|++.+| +.|+|++|||||||+|+|+|.+.|..+.+...... ..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 45788999999999 77999999999999999999999887776543211 00
Q ss_pred ---hhHHHHHh-------hhhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 245 ---KEDMAILM-------GNQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 245 ---~~~~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
...+.... +...+.++..+++..+++. .....+.++|||++|++ +|++|++.+|.+|++||
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv--aIARALa~~P~lli~DE------ 455 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV--AIARALALEPKLLILDE------ 455 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH--HHHHHHhcCCCEEEecC------
Confidence 00111111 1223345677788888876 46788899999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP 365 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~ 365 (741)
|++.+|+.++..+.++|..+.. .-+.++|++|||++.+...+.|.
T Consensus 456 ----p~SaLDvsvqa~VlnLl~~lq~---e~g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 456 ----PVSALDVSVQAQVLNLLKDLQE---ELGLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred ----CccccCHHHHHHHHHHHHHHHH---HhCCEEEEEeCCHHHHHhhCceE
Confidence 9999999999999999998875 46789999999999887655543
No 352
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.6e-15 Score=158.53 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=112.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~------------------- 241 (741)
.+.+.++.++++++|++++| ++|+||||+|||||+++|+|.+.+. .+.+.....
T Consensus 14 ~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~ 93 (261)
T PRK14258 14 SFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMV 93 (261)
T ss_pred EEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEE
Confidence 33344556899999999999 8899999999999999999998763 232211000
Q ss_pred --------cchhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++.... + .....++..+++.+++. ......+..+|||+.+++ ++++|+..+|.|
T Consensus 94 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~laral~~~p~v 171 (261)
T PRK14258 94 HPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL--CIARALAVKPKV 171 (261)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH--HHHHHHhcCCCE
Confidence 00111111110 0 01112233344444432 223566788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|+..+..+.+++.++.. ..+.++|++||+++.+...+.
T Consensus 172 llLDE----------P~~~LD~~~~~~l~~~l~~l~~---~~~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 172 LLMDE----------PCFGLDPIASMKVESLIQSLRL---RSELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred EEEeC----------CCccCCHHHHHHHHHHHHHHHH---hCCCEEEEEECCHHHHHHhcC
Confidence 99999 9999999999999999988743 135699999999998764443
No 353
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.7e-15 Score=173.24 Aligned_cols=154 Identities=10% Similarity=0.132 Sum_probs=116.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c-----------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V----------------------------- 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~----------------------------- 242 (741)
.++++++|++.+| ++|+||||||||||+|+|+|.+.+..+.+..... +
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 4789999999999 7899999999999999999998877666653210 0
Q ss_pred chhhHHHHH--hh----------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 243 TSKEDMAIL--MG----------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 243 ~~~~~~~~~--~~----------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+..+++... .. .....++..+++.+++. ......+..+|||+++++ .+++|+..+|.||||||
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl--~la~al~~~p~lllLDE-- 422 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA--ILGRWLSEDMKVILLDE-- 422 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH--HHHHHHccCCCEEEEcC--
Confidence 000111100 00 00112344566667773 456778899999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|...+..+.+++..+.. .+.+||++||+++++...+.+
T Consensus 423 --------Pt~~LD~~~~~~l~~~l~~l~~----~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 423 --------PTRGIDVGAKHEIYNVIYELAA----QGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred --------CCCCCCHhHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHhhCCE
Confidence 9999999999999999988864 366899999999988654443
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=99.57 E-value=1.3e-15 Score=175.64 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=115.2
Q ss_pred HhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------cchhhHHHHHhhh-hhhhcc
Q psy11254 197 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------VTSKEDMAILMGN-QLKRRS 260 (741)
Q Consensus 197 ~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------~~~~~~~~~~~~~-~~~~~~ 260 (741)
++.+++.+.+| ++|+||||+|||||+|+|+|.+.++.+++..... .+..+.+...... ......
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 434 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK 434 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHH
Confidence 67788889999 7899999999999999999999888777643110 0111122211100 011123
Q ss_pred cccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCC
Q psy11254 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 340 (741)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~ 340 (741)
..+++.+++.......+..+|||++|++ ++++|+..+|.||+||| |++++|...+..+.+++.++..
T Consensus 435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRv--aiAraL~~~p~llLLDE----------Pt~~LD~~~~~~l~~~l~~l~~- 501 (590)
T PRK13409 435 SEIIKPLQLERLLDKNVKDLSGGELQRV--AIAACLSRDADLYLLDE----------PSAHLDVEQRLAVAKAIRRIAE- 501 (590)
T ss_pred HHHHHHCCCHHHHhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH-
Confidence 4566677776666788999999999999 99999999999999999 9999999999999999998853
Q ss_pred CCCCCeEEEEeeCCCCCCCccc
Q psy11254 341 DSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 341 ~~~~~v~vI~at~~~~~ld~al 362 (741)
..+.++|++||+++++....
T Consensus 502 --~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 502 --EREATALVVDHDIYMIDYIS 521 (590)
T ss_pred --hCCCEEEEEeCCHHHHHHhC
Confidence 23568999999998876433
No 355
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.57 E-value=1.9e-15 Score=152.09 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=103.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc---cc---------chhhHHHHHhhhhhhhcc
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL---FV---------TSKEDMAILMGNQLKRRS 260 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~---~~---------~~~~~~~~~~~~~~~~~~ 260 (741)
.+++++++++++| ++|.||||+|||||+++|+|...++.+++.... ++ +..+++....... ..+.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~-~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFD-EERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcC-HHHH
Confidence 5899999999999 789999999999999999999988887775321 10 0011111100000 0000
Q ss_pred cccccc------c-----ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 261 THHLEK------T-----YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 261 ~~~l~~------~-----~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
...++. . ++..........+|||+++++ .+++|+..+|+++++|| |++++|+..++.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv--~laral~~~p~llllDE----------P~~~LD~~~~~~ 165 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI--SLARAVYSDADIYLLDD----------PLSAVDAHVGRH 165 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC----------ccccCCHHHHHH
Confidence 111111 1 111122345678999999999 99999999999999999 999999999888
Q ss_pred HHH-HHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 330 LME-LLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 330 l~~-lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+.+ ++..+.. .+.+||++||+++.+.
T Consensus 166 l~~~ll~~~~~----~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 166 IFENCILGLLL----NNKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHHHhcc----CCCEEEEEeCCHHHHh
Confidence 887 4555432 3579999999988775
No 356
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=1.4e-15 Score=154.15 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=112.2
Q ss_pred HhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc---hh--------------------------
Q psy11254 197 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT---SK-------------------------- 245 (741)
Q Consensus 197 ~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~---~~-------------------------- 245 (741)
+.+++|+++.| .++.|-+|||||||+|++.+...|+.+++....... ..
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 35678899999 568999999999999999999999888875431100 00
Q ss_pred -hHHHH------HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 246 -EDMAI------LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 246 -~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
++..+ .+..+..+++..+++.+|+.......+.++|||++|+| -+++|++.+|+||++|| |
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRV--GLARAla~~~~IlLMDE----------a 191 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRV--GLARALANDPDILLMDE----------A 191 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHH--HHHHHHccCCCEEEecC----------c
Confidence 11111 11224456778889999999999999999999999999 99999999999999999 8
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
.+.+||-.+..+.+-|.++.. .-+.+||++|||.++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~---~l~KTIvFitHDLdE 227 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQA---KLKKTIVFITHDLDE 227 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHH---HhCCeEEEEecCHHH
Confidence 899999777666665555543 234499999997654
No 357
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.3e-15 Score=158.29 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=110.9
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc----------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF---------------------- 241 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~---------------------- 241 (741)
+..+.+++++++++++| ++|+||||+|||||+++|+|...+ ..+++.....
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (251)
T PRK14270 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQK 93 (251)
T ss_pred ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecC
Confidence 34456889999999999 789999999999999999998754 3444432110
Q ss_pred -----cchhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 242 -----VTSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 242 -----~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
.+..+++..... .....++..+++.+++. ......+..+|||+++++ ++++|+..+|.||++
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~llll 171 (251)
T PRK14270 94 PNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL--CIARTIAVKPDVILM 171 (251)
T ss_pred CCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEE
Confidence 001112211100 01112233344454442 223456788999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+.+
T Consensus 172 DE----------P~~~LD~~~~~~l~~~L~~~~~-----~~tiiivsH~~~~~~~~~d~ 215 (251)
T PRK14270 172 DE----------PTSALDPISTLKIEDLMVELKK-----EYTIVIVTHNMQQASRVSDY 215 (251)
T ss_pred eC----------CcccCCHHHHHHHHHHHHHHHh-----CCeEEEEEcCHHHHHHhcCE
Confidence 99 9999999999999999988753 25899999999877654443
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.9e-15 Score=173.22 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=115.2
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c-----------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V----------------------------- 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~----------------------------- 242 (741)
.++++++|++++| ++|+||||||||||+|+|+|.+.++.|++..... +
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 3789999999999 7899999999999999999998877666643210 0
Q ss_pred chhhHHHHHhh---------------hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 TSKEDMAILMG---------------NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
+..+++..... .....++..+++.+++. ......+.++|||+++++ .|++|+..+|.|||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~lAral~~~p~lLlLD 434 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV--LISKWLCCCPEVIIFD 434 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH--HHHHHHhcCCCEEEEC
Confidence 00001110000 00112234556667775 556788899999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
| |++++|+..+..+.+++..+.. .+.+||++||+++.+...+.
T Consensus 435 E----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 435 E----------PTRGIDVGAKAEIYKVMRQLAD----DGKVILMVSSELPEIITVCD 477 (510)
T ss_pred C----------CCCCcCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHhhCC
Confidence 9 9999999999999999998753 35689999999987764443
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.8e-15 Score=148.27 Aligned_cols=138 Identities=15% Similarity=0.243 Sum_probs=98.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeecccccchhhHHHHHhhhhhhhccccccccccc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (741)
+.+++++++++.+| ++|+||||+|||||+++|+|.. .+..+++..... ++. ....+++....+...+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~-----~~~----~~~~~~i~~~~q~~~~ 90 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR-----PLD----KNFQRSTGYVEQQDVH 90 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE-----ehH----HHhhhceEEecccCcc
Confidence 45889999999999 7899999999999999999975 356666643211 110 0001111111111110
Q ss_pred CC--Cc-c-----chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCC
Q psy11254 270 PF--YS-S-----AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341 (741)
Q Consensus 270 ~~--~~-~-----~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~ 341 (741)
.. .. . .....+|||+.+++ .|++|+..+|.+|++|| |++++|+..+..+.+++.++..
T Consensus 91 ~~~~tv~~~l~~~~~~~~LSgGe~qrv--~la~al~~~p~vlllDE----------P~~~LD~~~~~~l~~~l~~~~~-- 156 (192)
T cd03232 91 SPNLTVREALRFSALLRGLSVEQRKRL--TIGVELAAKPSILFLDE----------PTSGLDSQAAYNIVRFLKKLAD-- 156 (192)
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHhHHH--HHHHHHhcCCcEEEEeC----------CCcCCCHHHHHHHHHHHHHHHH--
Confidence 00 00 0 01127999999999 99999999999999999 9999999999999999988753
Q ss_pred CCCCeEEEEeeCCCC
Q psy11254 342 SLGQVKMIMATNRPD 356 (741)
Q Consensus 342 ~~~~v~vI~at~~~~ 356 (741)
.+.++|++||+++
T Consensus 157 --~~~tiiivtH~~~ 169 (192)
T cd03232 157 --SGQAILCTIHQPS 169 (192)
T ss_pred --cCCEEEEEEcCCh
Confidence 3568999999987
No 360
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.57 E-value=3.2e-15 Score=154.16 Aligned_cols=149 Identities=16% Similarity=0.227 Sum_probs=104.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---h----hHHHHHhh------hhh--
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---K----EDMAILMG------NQL-- 256 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~----~~~~~~~~------~~~-- 256 (741)
..++++++|++++| ++|+||||||||||+++|+|.+.+..+++........ . ..++++.+ ...
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 35889999999999 7899999999999999999999887776643221000 0 00000000 000
Q ss_pred ----------hhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 257 ----------KRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 257 ----------~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+.....++.. ++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~la~al~~~p~llllDE-------- 165 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRI--AIARALLRNPKILLLDE-------- 165 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 00000001100 111122344678999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+. .+.+||++||+++.+.
T Consensus 166 --P~~gLD~~~~~~l~~~l~~~~-----~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 166 --ATSALDAESEKLVQEALDRAM-----KGRTTIVIAHRLSTIR 202 (238)
T ss_pred --ccccCCHHHHHHHHHHHHHhc-----CCCEEEEEeCCHHHHh
Confidence 999999999999999998763 2568999999998774
No 361
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.57 E-value=6e-15 Score=171.36 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=116.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHh-------h-----
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM-------G----- 253 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~-------~----- 253 (741)
.+....+.++++++++++.| +.++|+||||||||+|.+.|.+.|..|++....+.-..-+...+. +
T Consensus 480 ~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred EeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 34444568999999999999 999999999999999999999999988886543311111111100 0
Q ss_pred -------------hhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 254 -------------NQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 254 -------------~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+...+.+.+++... |+...-.+--..+|||++|++ ++++|+..+|.||+|||
T Consensus 560 ~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl--alARaLl~~P~ILlLDE-- 635 (709)
T COG2274 560 SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL--ALARALLSKPKILLLDE-- 635 (709)
T ss_pred cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH--HHHHHhccCCCEEEEeC--
Confidence 00001111111111 111222334456899999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
+|+++|+++.+.+.+.|.++.. +.++|++||++..+. +.|+.+.+
T Consensus 636 --------aTSaLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti~-------~adrIiVl 680 (709)
T COG2274 636 --------ATSALDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTIR-------SADRIIVL 680 (709)
T ss_pred --------cccccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHhh-------hccEEEEc
Confidence 9999999999999999988864 569999999998875 55665554
No 362
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.57 E-value=1.8e-15 Score=173.07 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=115.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-Cceeeecccc-c---------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-NFLKVVSSLF-V--------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-~~~~v~~~~~-~--------------------------- 242 (741)
..++++++|++.+| ++|+||||+|||||+|+|+|.+.+ ..+++..... .
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 45899999999999 789999999999999999999875 5666643210 0
Q ss_pred --chhhHHHHH----hh-------hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 --TSKEDMAIL----MG-------NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 --~~~~~~~~~----~~-------~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+++... .. .....++..+++.+++.. .....+..+|||+++++ .|++|+..+|.+|++||
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv--~la~al~~~p~lllLDE- 429 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA--VLAKMLLTNPRVLILDE- 429 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH--HHHHHHhhCCCEEEEcC-
Confidence 000111100 00 001123445666677753 45778899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++++...+
T Consensus 430 ---------Pt~~LD~~~~~~l~~~l~~l~~----~g~tviivsHd~~~~~~~~ 470 (500)
T TIGR02633 430 ---------PTRGVDVGAKYEIYKLINQLAQ----EGVAIIVVSSELAEVLGLS 470 (500)
T ss_pred ---------CCCCcCHhHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhC
Confidence 9999999999999999988864 3668999999999876443
No 363
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.57 E-value=2.8e-15 Score=171.03 Aligned_cols=159 Identities=12% Similarity=0.139 Sum_probs=116.4
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-Cceeeecccc-----------------cc---
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-NFLKVVSSLF-----------------VT--- 243 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-~~~~v~~~~~-----------------~~--- 243 (741)
+.+.+.+..++++++|.+++| ++|+||||||||||+|+|+|...+ ..+++..... +.
T Consensus 266 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 266 GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred eEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 344555566899999999999 789999999999999999997543 2344322110 00
Q ss_pred --------hhhHHHHHh-h----------hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 244 --------SKEDMAILM-G----------NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 244 --------~~~~~~~~~-~----------~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
...+..... . .....++..+++.+++.. .....+..+|||+++++ +|++|+..+|.||
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~~~p~ll 423 (490)
T PRK10938 346 HLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA--LIVRALVKHPTLL 423 (490)
T ss_pred HhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH--HHHHHHhcCCCEE
Confidence 000110000 0 001123445666677765 56778899999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
++|| |++++|+..+..+.+++.++.. .++.+||++||+++++..
T Consensus 424 lLDE----------Pt~gLD~~~~~~l~~~L~~l~~---~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 424 ILDE----------PLQGLDPLNRQLVRRFVDVLIS---EGETQLLFVSHHAEDAPA 467 (490)
T ss_pred EEcC----------ccccCCHHHHHHHHHHHHHHHh---cCCcEEEEEecchhhhhh
Confidence 9999 9999999999999999998864 234579999999998864
No 364
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.57 E-value=1.8e-15 Score=156.93 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=109.6
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--------------------------chhhH
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--------------------------TSKED 247 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--------------------------~~~~~ 247 (741)
.+++++|++++| ++|+||||+|||||+++|+|.+. ..+++...... +..++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 578899999999 78999999999999999999874 35555321100 00011
Q ss_pred HHHHhh-----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc-------CCeEEEecccccccccc
Q psy11254 248 MAILMG-----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH-------QPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 248 ~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~-------~P~ILllDEid~l~~~~ 315 (741)
+..... .....++..+++.+++.......+..+|||+++++ .+++|+.. +|.+|++||
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~~~~~~p~p~llllDE-------- 159 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRV--RLAAVVLQVWPDINPAGQLLLLDE-------- 159 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHhccccccCCCCCEEEEcC--------
Confidence 111100 01112334556666666555677899999999999 99999987 679999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 160 --Pt~~LD~~~~~~l~~~L~~~~~----~~~tvi~~sH~~~~~~~~~ 200 (248)
T PRK03695 160 --PMNSLDVAQQAALDRLLSELCQ----QGIAVVMSSHDLNHTLRHA 200 (248)
T ss_pred --CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHHhC
Confidence 9999999999999999988753 3579999999998765433
No 365
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.7e-15 Score=159.13 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeeccccc---------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLFV--------------------- 242 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~~--------------------- 242 (741)
+.+..++++++|++++| ++|+||||+|||||+++|+|.+. +..+++......
T Consensus 34 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 113 (271)
T PRK14238 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQK 113 (271)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecC
Confidence 34456889999999999 88999999999999999999886 355555322100
Q ss_pred ------chhhHHHHHhh-hh------hhhcccccccccc----cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 243 ------TSKEDMAILMG-NQ------LKRRSTHHLEKTY----FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 243 ------~~~~~~~~~~~-~~------~~~~~~~~l~~~~----~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
...+++..... .. ....+...++..+ +.......+..+|||+++++ +|++|+..+|.||++
T Consensus 114 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv--~laraL~~~p~lllL 191 (271)
T PRK14238 114 PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL--CIARCLAIEPDVILM 191 (271)
T ss_pred CccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH--HHHHHHHcCCCEEEE
Confidence 00111111100 00 0111122222221 22223456788999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.+
T Consensus 192 DE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tiiivsH~~~~i~~~~d~ 235 (271)
T PRK14238 192 DE----------PTSALDPISTLKVEELVQELKK-----DYSIIIVTHNMQQAARISDK 235 (271)
T ss_pred eC----------CCCcCCHHHHHHHHHHHHHHHc-----CCEEEEEEcCHHHHHHhCCE
Confidence 99 9999999999999999988753 36899999999887654433
No 366
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.8e-15 Score=159.17 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=112.1
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF------------------ 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~------------------ 241 (741)
+.+.+....++++++|++++| ++|+||||+|||||+++|+|.+.+ ..+++.....
T Consensus 27 l~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v 106 (276)
T PRK14271 27 LTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGML 106 (276)
T ss_pred EEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEe
Confidence 344455567899999999999 789999999999999999998874 3555432110
Q ss_pred --------cchhhHHHHHhh-------hhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
....+++..... .....++...++.+++.. .....+..+|||+.+++ .|++|+..+|.|
T Consensus 107 ~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl--~LAral~~~p~l 184 (276)
T PRK14271 107 FQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL--CLARTLAVNPEV 184 (276)
T ss_pred ccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH--HHHHHHhcCCCE
Confidence 001111111100 011111223334444432 12455778999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|...+..+.++|.++.. +.+||++||+++.+...+.
T Consensus 185 llLDE----------Pt~~LD~~~~~~l~~~L~~~~~-----~~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 185 LLLDE----------PTSALDPTTTEKIEEFIRSLAD-----RLTVIIVTHNLAQAARISD 230 (276)
T ss_pred EEEcC----------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhCC
Confidence 99999 9999999999999999988753 2599999999987654443
No 367
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.8e-15 Score=157.32 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=110.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc--------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF-------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~-------------------- 241 (741)
+.+..+.++++++|++.+| ++|+||||+|||||+++|+|.+.+. .+.+.....
T Consensus 12 ~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~ 91 (251)
T PRK14249 12 FFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91 (251)
T ss_pred EEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEe
Confidence 3344456899999999999 7899999999999999999998765 254432110
Q ss_pred -------cchhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 242 -------VTSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 242 -------~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
....+++..... ....+++...++..++. ......+..+|||+.+++ ++++|+..+|++|
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv--~laral~~~p~ll 169 (251)
T PRK14249 92 QQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL--CIARVLAIEPEVI 169 (251)
T ss_pred cCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH--HHHHHHhcCCCEE
Confidence 001111111100 00111122222333322 223566788999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++|| |++++|+..+..+.+++..+.. +.+||++||+++.+...+.+
T Consensus 170 lLDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tilivsh~~~~~~~~~d~ 215 (251)
T PRK14249 170 LMDE----------PCSALDPVSTMRIEELMQELKQ-----NYTIAIVTHNMQQAARASDW 215 (251)
T ss_pred EEeC----------CCccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHhhCCE
Confidence 9999 9999999999999999988742 46999999999887654433
No 368
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.57 E-value=2.8e-15 Score=171.55 Aligned_cols=151 Identities=12% Similarity=0.143 Sum_probs=114.6
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------c-------------c
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------V-------------T 243 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------~-------------~ 243 (741)
.+++++|.+++| ++|+||||||||||+|+|+|.+.+..+.+..... + .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 488999999999 7899999999999999999998777666643210 0 0
Q ss_pred hhhHHHHH-----h----hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 244 SKEDMAIL-----M----GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 244 ~~~~~~~~-----~----~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
..+++... . ......++..+++.+++. ......+..+|||+++++ .|++|+..+|.||||||
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl--~la~al~~~p~lLlLDE------ 429 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV--LIAKCLEASPQLLIVDE------ 429 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH--HHHHHHhhCCCEEEECC------
Confidence 00111000 0 000112344566667775 556788899999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++++...+
T Consensus 430 ----Pt~gLD~~~~~~l~~~l~~l~~----~g~tiIivsHd~~~i~~~~ 470 (510)
T PRK15439 430 ----PTRGVDVSARNDIYQLIRSIAA----QNVAVLFISSDLEEIEQMA 470 (510)
T ss_pred ----CCcCcChhHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHHhC
Confidence 9999999999999999998864 2568999999999876444
No 369
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.57 E-value=1.8e-15 Score=174.78 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=117.0
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----cc-----------chhhHH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FV-----------TSKEDM 248 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~-----------~~~~~~ 248 (741)
+.+.+.+..++++++|.+..| ++|+||||||||||+++|+|.+.+..|.+.... ++ +..+.+
T Consensus 328 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l 407 (552)
T TIGR03719 328 LSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEI 407 (552)
T ss_pred EEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHH
Confidence 344455567999999999999 789999999999999999999988777664310 00 111122
Q ss_pred HHHhh----hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 249 AILMG----NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 249 ~~~~~----~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
..... .....+...+++.+++.. .....+..+|||+++++ +|++|+..+|.+||+|| |++++|
T Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv--~la~al~~~p~lllLDE----------Pt~~LD 475 (552)
T TIGR03719 408 SGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRV--HLAKTLKSGGNVLLLDE----------PTNDLD 475 (552)
T ss_pred HhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH--HHHHHHhhCCCEEEEeC----------CCCCCC
Confidence 11110 000112234566666643 34678899999999999 99999999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+..+..+.+++..+.+ +||++||+++++...+
T Consensus 476 ~~~~~~l~~~l~~~~~-------~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 476 VETLRALEEALLEFAG-------CAVVISHDRWFLDRIA 507 (552)
T ss_pred HHHHHHHHHHHHHCCC-------eEEEEeCCHHHHHHhC
Confidence 9999999999988732 6999999999876444
No 370
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=1.6e-14 Score=171.33 Aligned_cols=162 Identities=26% Similarity=0.383 Sum_probs=124.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhcCCeE
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNHQPCI 586 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~~p~V 586 (741)
+......+++|+||||||||++++.+|..+ +..++.++.+.++ .+|.|+.+..++.+|+.+....|+|
T Consensus 198 L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~I 277 (731)
T TIGR02639 198 LCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAI 277 (731)
T ss_pred HhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeE
Confidence 334456689999999999999999999987 6678889988887 5899999999999999998778999
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCC
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p 661 (741)
|||||++.+.+.+...+++ ......+...|. .+.+.+|++||..+ ..|+|+.| ||. .|+|+.|
T Consensus 278 LfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~-------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p 345 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSGGS--MDASNLLKPALS-------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEP 345 (731)
T ss_pred EEEecHHHHhccCCCCCcc--HHHHHHHHHHHh-------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCC
Confidence 9999999998765433222 223344443332 35788999999643 57999999 997 6999999
Q ss_pred CHHHHHHHHHHhhcCccc--cCCCCcccccccc
Q psy11254 662 NEQARLEILKIHAGPIAK--HGEIGDAATKWVL 692 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~--~~~~~~~a~~~l~ 692 (741)
+.+++.+|++........ ...+++.++..+.
T Consensus 346 ~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~ 378 (731)
T TIGR02639 346 SIEETVKILKGLKEKYEEFHHVKYSDEALEAAV 378 (731)
T ss_pred CHHHHHHHHHHHHHHHHhccCcccCHHHHHHHH
Confidence 999999999976654322 2356666655443
No 371
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.9e-15 Score=157.31 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=110.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--C---Cceeeecccc-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--A---NFLKVVSSLF------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~---~~~~v~~~~~------------------- 241 (741)
.+.+..+.++++++|++.+| ++|+||||+|||||+++|+|... + ..|++.....
T Consensus 12 ~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 91 (252)
T PRK14239 12 SVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMV 91 (252)
T ss_pred EEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEE
Confidence 33344556899999999999 88999999999999999999742 3 2344332110
Q ss_pred --------cchhhHHHHHh---h----hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 --------VTSKEDMAILM---G----NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 --------~~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
.+..+++.... + .....++..+++.+++. ......+..+|||+++++ .+++|+..+|.|
T Consensus 92 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~l 169 (252)
T PRK14239 92 FQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV--CIARVLATSPKI 169 (252)
T ss_pred ecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH--HHHHHHhcCCCE
Confidence 01111222110 0 00112223334444432 123556788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 170 lllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 170 ILLDE----------PTSALDPISAGKIEETLLGLKD-----DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred EEEcC----------CccccCHHHHHHHHHHHHHHhh-----CCeEEEEECCHHHHHHhCC
Confidence 99999 9999999999999999988742 3589999999987654333
No 372
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.1e-15 Score=158.61 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=111.3
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------ 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------ 242 (741)
.+.+..+.++++++|.+.+| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 32 ~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v 111 (272)
T PRK14236 32 NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMV 111 (272)
T ss_pred EEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEE
Confidence 33444456889999999999 789999999999999999999763 44544321100
Q ss_pred ---------chhhHHHHHhhh-------hhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 ---------TSKEDMAILMGN-------QLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 ---------~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
+..+++...... ....++..+++.+++.. .....+..+|||+.+++ ++++|+..+|+|
T Consensus 112 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~laral~~~p~l 189 (272)
T PRK14236 112 FQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL--VIARAIAIEPEV 189 (272)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH--HHHHHHHCCCCE
Confidence 011111111000 01112233334444321 23456788999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+.+
T Consensus 190 llLDE----------Pt~gLD~~~~~~l~~~L~~~~~-----~~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 190 LLLDE----------PTSALDPISTLKIEELITELKS-----KYTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred EEEeC----------CcccCCHHHHHHHHHHHHHHHh-----CCeEEEEeCCHHHHHhhCCE
Confidence 99999 9999999999999999988753 35899999999877544433
No 373
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.5e-15 Score=158.13 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=109.1
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------- 242 (741)
+.+.++.++++++|.+++| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 28 ~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~ 107 (274)
T PRK14265 28 VFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107 (274)
T ss_pred EEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEc
Confidence 3444456889999999999 789999999999999999998753 24444321100
Q ss_pred --------chhhHHHHHhh-----hhhhhccccccccccc----CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 243 --------TSKEDMAILMG-----NQLKRRSTHHLEKTYF----PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 243 --------~~~~~~~~~~~-----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
...+++..... ......+...++..++ .......+..+|||+.+++ .+++|+..+|++|++
T Consensus 108 q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~LAraL~~~p~lllL 185 (274)
T PRK14265 108 QRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL--CIARAIAMKPDVLLM 185 (274)
T ss_pred cCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH--HHHHHHhhCCCEEEE
Confidence 00111111000 0001111222333332 1223456788999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|| |++++|+..+..+.+++.++.. +.+||++||+++.+...+.
T Consensus 186 DE----------Pt~~LD~~~~~~l~~~L~~~~~-----~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 186 DE----------PCSALDPISTRQVEELCLELKE-----QYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred eC----------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhCC
Confidence 99 9999999999999999988753 3589999999988764443
No 374
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=4.9e-15 Score=145.32 Aligned_cols=156 Identities=13% Similarity=0.213 Sum_probs=114.0
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+...|+...++++++|.+++| ++|+||||+||||++|+|+|...+..+++.....
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 445678888999999999999 7899999999999999999999988888764311
Q ss_pred ----cchhhHHHHH---hhh-hhhhc-ccccccccc-cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 ----VTSKEDMAIL---MGN-QLKRR-STHHLEKTY-FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ----~~~~~~~~~~---~~~-~~~~~-~~~~l~~~~-~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
++..+++..- ... ....+ ....++.+- +.....+..+++|||++|++ ++++|+..+|.+|+|||
T Consensus 89 iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQML--AiaRALm~~PklLLLDE---- 162 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQML--AIARALMSRPKLLLLDE---- 162 (237)
T ss_pred chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHH--HHHHHHhcCCCEEEecC----
Confidence 0111111100 000 00000 111222211 22334667789999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|+.++.|.....+.+.+..+.. ..+++|+++..+...
T Consensus 163 ------Ps~GLaP~iv~~I~~~i~~l~~---~~g~tIlLVEQn~~~ 199 (237)
T COG0410 163 ------PSEGLAPKIVEEIFEAIKELRK---EGGMTILLVEQNARF 199 (237)
T ss_pred ------CccCcCHHHHHHHHHHHHHHHH---cCCcEEEEEeccHHH
Confidence 9999999999999999999875 456899999887653
No 375
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.1e-15 Score=155.39 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=104.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
..+++++++.+++| ++|+||||+|||||+++|+|.+.+..|++....... ..+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 45889999999999 789999999999999999999988777665421100 000
Q ss_pred HHHHHhhhhhhhccc---------cccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRST---------HHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~---------~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++............. ..+... ++.......+..+|||+++++ .+++|+..+|++|++||
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl--~la~aL~~~p~llllDE-------- 163 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV--AIARAILKNPPILLLDE-------- 163 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 010000000000000 000110 111112334568999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.++|++||+++.+.
T Consensus 164 --P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sh~~~~~~ 200 (236)
T cd03253 164 --ATSALDTHTEREIQAALRDVSK-----GRTTIVIAHRLSTIV 200 (236)
T ss_pred --CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHHHHH
Confidence 9999999999999999987642 568999999998774
No 376
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.56 E-value=2.7e-15 Score=172.41 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=115.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc-cc----c------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS-LF----V------------------------ 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~-~~----~------------------------ 242 (741)
..++++++|.+++| ++|+||||||||||+|+|+|.+.+..+++... .. .
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 35899999999999 78999999999999999999998877776541 00 0
Q ss_pred ----chhhHHHHHhh-----hhhhhcccccccccccCC-----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 ----TSKEDMAILMG-----NQLKRRSTHHLEKTYFPF-----YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 ----~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+.+..... .....++..+++.+++.. .....+.++|||+++++ +|++|+..+|.||++||
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv--~laral~~~p~lLllDE- 453 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV--ALAQVLIKEPRIVILDE- 453 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEEeC-
Confidence 00011111000 011123445566677653 34678899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..++.+.+++..+.. ..+.+||++||+++.+...+
T Consensus 454 ---------Pt~~LD~~~~~~l~~~l~~l~~---~~g~tvi~vsHd~~~~~~~~ 495 (520)
T TIGR03269 454 ---------PTGTMDPITKVDVTHSILKARE---EMEQTFIIVSHDMDFVLDVC 495 (520)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHHH---HcCcEEEEEeCCHHHHHHhC
Confidence 9999999999999999988753 23578999999998775433
No 377
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.9e-15 Score=156.44 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=111.0
Q ss_pred CCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc---------------------
Q psy11254 191 LLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV--------------------- 242 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~--------------------- 242 (741)
+++..++++++|++++| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 44556889999999999 789999999999999999999865 34544322110
Q ss_pred ------chhhHHHHHh-----hhhhhhcccccccccccCC----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 243 ------TSKEDMAILM-----GNQLKRRSTHHLEKTYFPF----YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 243 ------~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
+..+++.... ......++...++..++.. .....+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 98 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv--~laral~~~p~llllDE 175 (261)
T PRK14263 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL--CIARAIATEPEVLLLDE 175 (261)
T ss_pred CccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC
Confidence 0011111110 0011123344455555422 12345678999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. +.++|++||+++.+...+.
T Consensus 176 ----------PtsgLD~~~~~~l~~~l~~~~~-----~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 176 ----------PCSALDPIATRRVEELMVELKK-----DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred ----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHhCC
Confidence 9999999999999999998742 3589999999987764443
No 378
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.56 E-value=4.2e-15 Score=159.94 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=104.5
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHHHHhh------hhhhhc
Q psy11254 210 LYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMAILMG------NQLKRR 259 (741)
Q Consensus 210 L~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~~~~~------~~~~~~ 259 (741)
|+||||||||||+|+|+|.+.+..|++..... .+..+++.+... .....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999999887776643210 111222322111 112234
Q ss_pred ccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 260 ~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
+..+++.+++.......+.++|||+++++ ++++|+..+|++|+||| |++++|+..+..+.+++.++..
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRv--alaraL~~~p~lllLDE----------P~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRV--ALARALVFKPKILLLDE----------PLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH
Confidence 55677777877777888999999999999 99999999999999999 9999999999999999988753
Q ss_pred CCCCCCeEEEEeeCCCCCCCc
Q psy11254 340 FDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~ld~ 360 (741)
..+.++|++||+++++..
T Consensus 149 ---~~g~tiiivTHd~~e~~~ 166 (325)
T TIGR01187 149 ---QLGITFVFVTHDQEEAMT 166 (325)
T ss_pred ---hcCCEEEEEeCCHHHHHH
Confidence 236799999999987643
No 379
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.56 E-value=2.3e-15 Score=173.93 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=117.1
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----cc-----------chhhHH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FV-----------TSKEDM 248 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~-----------~~~~~~ 248 (741)
+.+.+.+..++++++|++.+| ++|+||||||||||+++|+|.+.+..|++.... ++ +..+.+
T Consensus 330 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l 409 (556)
T PRK11819 330 LSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEI 409 (556)
T ss_pred EEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHH
Confidence 344455567999999999999 789999999999999999999988877765321 00 111111
Q ss_pred HHHhh-h---hhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 249 AILMG-N---QLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 249 ~~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
..... . .........++.+++.. .....+..+|||+++++ .|++|+..+|.+|++|| |++++|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~~~p~lllLDE----------Pt~~LD 477 (556)
T PRK11819 410 SGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRL--HLAKTLKQGGNVLLLDE----------PTNDLD 477 (556)
T ss_pred HhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCCCCC
Confidence 11100 0 00112234566666643 34677899999999999 99999999999999999 999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+..+..+.+++..+.+ +||++||+++++...+.
T Consensus 478 ~~~~~~l~~~l~~~~~-------tvi~vtHd~~~~~~~~d 510 (556)
T PRK11819 478 VETLRALEEALLEFPG-------CAVVISHDRWFLDRIAT 510 (556)
T ss_pred HHHHHHHHHHHHhCCC-------eEEEEECCHHHHHHhCC
Confidence 9999999999988632 68999999988765443
No 380
>PLN03073 ABC transporter F family; Provisional
Probab=99.56 E-value=1.9e-15 Score=177.49 Aligned_cols=158 Identities=15% Similarity=0.211 Sum_probs=116.4
Q ss_pred hccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----cc--------chhhHHH-H
Q psy11254 188 ELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FV--------TSKEDMA-I 250 (741)
Q Consensus 188 ~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~--------~~~~~~~-~ 250 (741)
.+.+. .+.+|++++|.+..| ++|+||||||||||+|+|+|.+.+..|.+.... ++ ....+.. .
T Consensus 515 s~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~ 594 (718)
T PLN03073 515 SFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLY 594 (718)
T ss_pred EEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHH
Confidence 34443 345899999999999 889999999999999999999988877765321 00 0001100 1
Q ss_pred Hh---hhhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 251 LM---GNQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 251 ~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
.. ......++..+++.+++.. .....+..+|||+++++ +|++|+..+|.+|+||| |++++|+..
T Consensus 595 ~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv--aLAraL~~~p~lLLLDE----------PT~~LD~~s 662 (718)
T PLN03073 595 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV--AFAKITFKKPHILLLDE----------PSNHLDLDA 662 (718)
T ss_pred HHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH--HHHHHHhcCCCEEEEcC----------CCCCCCHHH
Confidence 10 0111234455667777753 34667899999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
...+.+.+..+. + +||++||+++++...+.+
T Consensus 663 ~~~l~~~L~~~~------g-tvIivSHd~~~i~~~~dr 693 (718)
T PLN03073 663 VEALIQGLVLFQ------G-GVLMVSHDEHLISGSVDE 693 (718)
T ss_pred HHHHHHHHHHcC------C-EEEEEECCHHHHHHhCCE
Confidence 998888877642 2 899999999988754443
No 381
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.9e-15 Score=155.91 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=109.5
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~~------------------- 242 (741)
+.+.++.++++++|++++| ++|+||||+|||||+++|+|.+.+ ..+++......
T Consensus 14 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (253)
T PRK14261 14 LWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVF 93 (253)
T ss_pred EEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEe
Confidence 3344556899999999999 789999999999999999997652 13544321100
Q ss_pred --------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 --------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 --------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
+..+++..... .....++...++.+++. ......+..+|||+++++ .+++|+..+|+++
T Consensus 94 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p~ll 171 (253)
T PRK14261 94 QRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL--CIARTLAVNPEVI 171 (253)
T ss_pred cCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH--HHHHHHhcCCCEE
Confidence 00011111100 00111222233333331 123566788999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+.
T Consensus 172 lLDE----------P~~gLD~~~~~~l~~~l~~~~~-----~~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 172 LMDE----------PCSALDPIATAKIEDLIEDLKK-----EYTVIIVTHNMQQAARVSD 216 (253)
T ss_pred EEeC----------CcccCCHHHHHHHHHHHHHHhh-----CceEEEEEcCHHHHHhhCC
Confidence 9999 9999999999999999988753 3689999999988765443
No 382
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.3e-15 Score=174.62 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=116.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-c-----------------------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-V----------------------------- 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~----------------------------- 242 (741)
.++++++|++++| ++|+||||||||||+|+|+|.+.+..|++..... +
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 5889999999999 7899999999999999999999877666643210 0
Q ss_pred -chhhHHHHHh---h----hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 -TSKEDMAILM---G----NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 -~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
...+.+.... + .....++..+++.+++. ......+.++|||++|++ +|++|+..+|.+||+||
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv--~iAraL~~~p~llllDE------ 489 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI--CIARALALNPKVIIADE------ 489 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH--HHHHHHhcCCCEEEEeC------
Confidence 0011111110 0 01123455667777775 345778899999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcc
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~a 361 (741)
|++++|...+..+.+++..+.. ..+.+||++||+++.+...
T Consensus 490 ----Pts~LD~~~~~~i~~ll~~l~~---~~g~tvi~isHdl~~v~~~ 530 (623)
T PRK10261 490 ----AVSALDVSIRGQIINLLLDLQR---DFGIAYLFISHDMAVVERI 530 (623)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHh
Confidence 9999999999999999988754 2367999999999876543
No 383
>KOG0744|consensus
Probab=99.55 E-value=4e-15 Score=150.77 Aligned_cols=184 Identities=24% Similarity=0.367 Sum_probs=130.8
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCC-----CCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGI-----TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l-----~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
|+.+.==...|+++..+....+ .|...+. ...+-++|+||||||||+|+|++|..+... ....
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l----~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR---~~~~----- 208 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASAL----LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR---TNDR----- 208 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHH----HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee---ecCc-----
Confidence 4444333467888888765432 2222222 223348899999999999999999987532 1110
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh--cCCe---EEEeccccccccccCCCC
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN--HQPC---IIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~--~~P~---ILllDEid~l~~~~~~p~ 319 (741)
.-...-++.....++++|.+++.+.|..+|...-. ..+. .++|||+++|+..|.+..
T Consensus 209 ------------------y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~ 270 (423)
T KOG0744|consen 209 ------------------YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSAS 270 (423)
T ss_pred ------------------cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhh
Confidence 00001122334778899999999999988886543 2232 346999999998884433
Q ss_pred C-CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 320 T-SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 320 ~-~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
+ +......|.+..+|.++|.+....+|.+++|+|-.+.+|-|+-. |-|.+.++++|+..++++|
T Consensus 271 S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 271 SRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred cCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHH
Confidence 3 22345688899999999988888999999999989999999977 9999999999999999888
No 384
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.55 E-value=2.2e-15 Score=157.90 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=106.2
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~ 245 (741)
.+.++++++|.+++| ++|+||||+|||||+++|+|.+. ..+++....... ..
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence 355899999999999 88999999999999999999986 556554321100 00
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhh-----------hcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK-----------YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++... +.....++...++.+++......++.. +|||+.+++ .|++|+..+|+||++||
T Consensus 95 ~nl~~~-~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl--~LaRall~~p~illlDE------- 164 (275)
T cd03289 95 KNLDPY-GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM--CLARSVLSKAKILLLDE------- 164 (275)
T ss_pred HHhhhc-cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEEC-------
Confidence 111100 000112233344444544333334443 999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+++.++. .+.+||++||+++.+.
T Consensus 165 ---pts~LD~~~~~~l~~~l~~~~-----~~~tii~isH~~~~i~ 201 (275)
T cd03289 165 ---PSAHLDPITYQVIRKTLKQAF-----ADCTVILSEHRIEAML 201 (275)
T ss_pred ---ccccCCHHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHH
Confidence 999999999999999998753 2578999999998764
No 385
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.9e-15 Score=155.87 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=109.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--C---Cceeeecccc------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--A---NFLKVVSSLF------------------ 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~---~~~~v~~~~~------------------ 241 (741)
+.+.+..+.++++++|++.+| ++|+||||+|||||+++|+|... + ..+++.....
T Consensus 11 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 90 (252)
T PRK14255 11 VHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90 (252)
T ss_pred EEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEE
Confidence 344455556899999999999 88999999999999999999754 2 1343321100
Q ss_pred ---------cchhhHHHHHhhh-------hhhhccccccccccc----CCCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ---------VTSKEDMAILMGN-------QLKRRSTHHLEKTYF----PFYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ---------~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~----~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
....+++...... ....++...++..++ .......+..+|||+.+++ .+++|+..+|.
T Consensus 91 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv--~laral~~~p~ 168 (252)
T PRK14255 91 VFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV--CIARVLAVKPD 168 (252)
T ss_pred EECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH--HHHHHHhcCCC
Confidence 0111122211100 001122222333332 1223556788999999999 99999999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+|++|| |++++|+..+..+.+++..+.. +.++|++||+++.+...+.
T Consensus 169 llllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 169 VILLDE----------PTSALDPISSTQIENMLLELRD-----QYTIILVTHSMHQASRISD 215 (252)
T ss_pred EEEEcC----------CCccCCHHHHHHHHHHHHHHHh-----CCEEEEEECCHHHHHHhCC
Confidence 999999 9999999999999999988753 2589999999987754443
No 386
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=1.1e-14 Score=133.57 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=118.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc--cc----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS--LF---------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~--~~---------------------- 241 (741)
...++....+-+++++-+.| +.|.||+|+|||||+|.+.=.--+..+.+... .+
T Consensus 9 n~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred ccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 34567778888899999999 78999999999999999875555544444321 00
Q ss_pred --------cchhhHHHH-------HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 242 --------VTSKEDMAI-------LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 242 --------~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
++..+++.+ +..++...++...+..+.+....+.+.-.+|||+++++ ++++|+.+.|.||++|
T Consensus 89 qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrv--aiaralmmkpqvllfd 166 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRV--AIARALMMEPQVLLFD 166 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhH--HHHHHHhcCCcEEeec
Confidence 011111111 12234455566667777777777888889999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
| |+..+||+....+.++++++.+ .+++-+++||..+...
T Consensus 167 e----------ptaaldpeitaqvv~iikel~~----tgitqvivthev~va~ 205 (242)
T COG4161 167 E----------PTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVAR 205 (242)
T ss_pred C----------cccccCHHHHHHHHHHHHHHHh----cCceEEEEEeehhHHH
Confidence 9 9999999999999999999987 6889999999777544
No 387
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.55 E-value=5e-15 Score=169.29 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=115.0
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------c
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------T 243 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------~ 243 (741)
++++++|.+.+| ++|+||||||||||+|+|+|.+.++.+++...... +
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 588999999999 78999999999999999999998876666432100 0
Q ss_pred hhhHHHHHh------------hhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 244 SKEDMAILM------------GNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 244 ~~~~~~~~~------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
..+++.... ......++..+++.+++. ......+..+|||+++++ .|++|+..+|.+|++||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv--~lA~al~~~p~lllLDE--- 421 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV--AIARGLMTRPKVLILDE--- 421 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH--HHHHHHhhCCCEEEEcC---
Confidence 001111100 001112344566667774 456788999999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 422 -------Pt~~LD~~~~~~l~~~l~~~~~----~g~tviivtHd~~~~~~~~ 462 (501)
T PRK10762 422 -------PTRGVDVGAKKEIYQLINQFKA----EGLSIILVSSEMPEVLGMS 462 (501)
T ss_pred -------CCCCCCHhHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHhhC
Confidence 9999999999999999998864 3678999999998775433
No 388
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=8.7e-15 Score=147.60 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---h----hHHHHHhhh------hhhhc
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---K----EDMAILMGN------QLKRR 259 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~----~~~~~~~~~------~~~~~ 259 (741)
.+++++++.+++| ++|+||||+|||||+++|+|.+.+..+++........ . ..++++.++ .....
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 5899999999999 7899999999999999999999887777654221000 0 000000000 00000
Q ss_pred c--------cccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHH
Q psy11254 260 S--------THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331 (741)
Q Consensus 260 ~--------~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~ 331 (741)
+ ....+.+. ....+..+|||+.+++ .|++|+..+|++|++|| |++++|+..+..+.
T Consensus 102 l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv--~laral~~~p~llllDE----------P~~~LD~~~~~~l~ 165 (207)
T cd03369 102 LDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLL--CLARALLKRPRVLVLDE----------ATASIDYATDALIQ 165 (207)
T ss_pred hcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHH--HHHHHHhhCCCEEEEeC----------CcccCCHHHHHHHH
Confidence 0 00000011 2345678999999999 99999999999999999 99999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 332 ELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 332 ~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+++..+. .+.++|++||+++.+.
T Consensus 166 ~~l~~~~-----~~~tiii~th~~~~~~ 188 (207)
T cd03369 166 KTIREEF-----TNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHhc-----CCCEEEEEeCCHHHHh
Confidence 9998763 2568999999988764
No 389
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.54 E-value=4.5e-15 Score=169.31 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=114.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-cc--hhhH-----HHH-------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-VT--SKED-----MAI------------- 250 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-~~--~~~~-----~~~------------- 250 (741)
+.++++++|.+++| ++|+||||||||||+|+|+|...+..+.+..... +. .... +++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 35899999999999 7899999999999999999999887776654210 00 0000 000
Q ss_pred -----------Hh------h----hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 251 -----------LM------G----NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 251 -----------~~------~----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+. + .....++...++.+++. ......+.++|||+++++ ++++|+..+|.||||||
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~~~p~illLDE- 417 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV--IIGRWLLTQPEILMLDE- 417 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH--HHHHHHhcCCCEEEEcC-
Confidence 00 0 00111223344555553 345778899999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++++...+.
T Consensus 418 ---------Pt~gLD~~~~~~~~~~l~~l~~----~~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 418 ---------PTRGIDVGAKFEIYQLIAELAK----KDKGIIIISSEMPELLGITD 459 (491)
T ss_pred ---------CCcccChhHHHHHHHHHHHHHH----CCCEEEEECCChHHHHhhCC
Confidence 9999999999999999988764 36789999999988764333
No 390
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=3.2e-15 Score=172.03 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=114.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------ 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------ 241 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+. +.|++.....
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 45899999999999 78999999999999999999873 5455432110
Q ss_pred -cchhhHHHHHh---h-----hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 -VTSKEDMAILM---G-----NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 -~~~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
....+++.... + .....++..+++.+++. ......+..+|||+++++ +|++|+..+|.+|++||
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~~~p~llllDE---- 451 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI--AIARALILKPSLIILDE---- 451 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH--HHHHHHhCCCCEEEeeC----
Confidence 00111121110 0 01123345566667775 345678899999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
|++++|+..+..+.+++.++.. ..+.+||++||+++.+...+.
T Consensus 452 ------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 452 ------PTSSLDKTVQAQILALLKSLQQ---KHQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred ------CccccCHHHHHHHHHHHHHHHH---hhCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999998753 235689999999987764433
No 391
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=8.4e-15 Score=139.12 Aligned_cols=160 Identities=15% Similarity=0.211 Sum_probs=126.1
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---hhH----HHHHhh--
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---KED----MAILMG-- 253 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~~~----~~~~~~-- 253 (741)
+.+...++...+++++++.+|+| ..|+||||+|||||+-++++.++.+.+.+......-. ..+ ++.+.+
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 45667788899999999999999 6699999999999999999999999888865422111 111 111111
Q ss_pred -------------------------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 254 -------------------------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 254 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
.+.++.+..+++.+.+.....+...++|||++|+. .++..++.+-+.+||||
T Consensus 85 ~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRA--fIAMVlaQdTdyvlLDE- 161 (252)
T COG4604 85 HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRA--FIAMVLAQDTDYVLLDE- 161 (252)
T ss_pred hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhh--hhheeeeccCcEEEecC-
Confidence 12345566777888888888899999999999987 89999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|-+++|......++++|..+.. .-+.++|++-||..+..
T Consensus 162 ---------PLNNLDmkHsv~iMk~Lrrla~---el~KtiviVlHDINfAS 200 (252)
T COG4604 162 ---------PLNNLDMKHSVQIMKILRRLAD---ELGKTIVVVLHDINFAS 200 (252)
T ss_pred ---------cccccchHHHHHHHHHHHHHHH---HhCCeEEEEEecccHHH
Confidence 9999999999999999887754 23558999999988653
No 392
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5e-15 Score=153.91 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=109.5
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC--C---Cceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD--A---NFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~---~~~~v~~~~~~------------------- 242 (741)
+.+.+..++++++|++++| ++|+||||+|||||+++|+|..+ + +.+++......
T Consensus 11 ~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~ 90 (250)
T PRK14266 11 TYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVF 90 (250)
T ss_pred EEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEe
Confidence 3344456899999999999 78999999999999999999764 2 34544321100
Q ss_pred --------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 243 --------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 243 --------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
...+++..... .....++...++.+++. ......+..+|||+++++ +|++|+..+|.||
T Consensus 91 q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv--~laral~~~p~ll 168 (250)
T PRK14266 91 QKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL--CIARTIAVSPEVI 168 (250)
T ss_pred cCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH--HHHHHHHcCCCEE
Confidence 00111111100 01112223333333332 122455778999999999 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|| |++++|+..+..+.+++.++.. +.++|++||+++.+...+.
T Consensus 169 llDE----------P~~gLD~~~~~~l~~~l~~~~~-----~~tiii~sh~~~~~~~~~~ 213 (250)
T PRK14266 169 LMDE----------PCSALDPISTTKIEDLIHKLKE-----DYTIVIVTHNMQQATRVSK 213 (250)
T ss_pred EEcC----------CCccCCHHHHHHHHHHHHHHhc-----CCeEEEEECCHHHHHhhcC
Confidence 9999 9999999999999999988742 4699999999987765443
No 393
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5.4e-15 Score=157.83 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=108.4
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC-----CCceeeeccccc-------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSLFV------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~-----~~~~~v~~~~~~------------------- 242 (741)
+.+....++++++|++.+| ++|+||||+|||||+++|+|.+. +..+++......
T Consensus 53 ~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~ 132 (305)
T PRK14264 53 VYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVF 132 (305)
T ss_pred EEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEc
Confidence 3344456889999999999 78999999999999999999875 345554321100
Q ss_pred --------chhhHHHHHhh-------------------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHH
Q psy11254 243 --------TSKEDMAILMG-------------------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREM 291 (741)
Q Consensus 243 --------~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~ 291 (741)
...+++..... .....++..+++.+++. ......+..+|||+++++ .
T Consensus 133 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~ 210 (305)
T PRK14264 133 QSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRL--C 210 (305)
T ss_pred cCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHH--H
Confidence 00001111000 00011122233333332 123455788999999999 9
Q ss_pred HHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 292 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 292 ~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++|+..+|.|||+|| |++++|+..+..+.++|..+.. +.+||++||+++.+..
T Consensus 211 LAraL~~~p~lLLLDE----------PtsgLD~~~~~~l~~~L~~~~~-----~~tiiivtH~~~~i~~ 264 (305)
T PRK14264 211 IARCLAVDPEVILMDE----------PASALDPIATSKIEDLIEELAE-----EYTVVVVTHNMQQAAR 264 (305)
T ss_pred HHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEEcCHHHHHH
Confidence 9999999999999999 9999999999999999988754 2589999999987654
No 394
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.5e-14 Score=132.88 Aligned_cols=155 Identities=16% Similarity=0.216 Sum_probs=116.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh-------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE------------------- 246 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~------------------- 246 (741)
+..|+...-+++++|.+..| +.++|.+|+|||||++||++.+.|+.+.+....-.....
T Consensus 13 sk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 13 SKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 34466667788999999999 569999999999999999999999888776432111111
Q ss_pred ------------------HHHHH---hh----hhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 247 ------------------DMAIL---MG----NQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 247 ------------------~~~~~---~~----~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
++.+. .+ ..++..+.++++...+... .++....+|||+++++ .+++-+...|
T Consensus 93 ~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL--QiARnLVt~P 170 (258)
T COG4107 93 FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL--QIARNLVTRP 170 (258)
T ss_pred eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH--HHHHHhccCC
Confidence 11110 00 0223334566666655433 4678899999999999 8999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
.++|+|| |+.++|...+..+.+++..+-. .-+..+|++|||...
T Consensus 171 rLvfMDE----------PTGGLDVSVQARLLDllrgLv~---~l~la~viVTHDl~V 214 (258)
T COG4107 171 RLVFMDE----------PTGGLDVSVQARLLDLLRGLVR---ELGLAVVIVTHDLAV 214 (258)
T ss_pred ceEEecC----------CCCCcchhhHHHHHHHHHHHHH---hcCceEEEEechhHH
Confidence 9999999 9999999999999999987764 356789999998753
No 395
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.53 E-value=6.2e-15 Score=185.85 Aligned_cols=155 Identities=15% Similarity=0.242 Sum_probs=121.6
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------cchhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------VTSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~~~~~ 246 (741)
..+++++++.+++| ++|+||||+|||||+|+|+|.+.++.|++..... ++..+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 46899999999999 7899999999999999999999888777754221 11111
Q ss_pred HHHHH---hh---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 247 DMAIL---MG---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 247 ~~~~~---~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+... .+ .....++...++.+++.......+.+||||+++++ .+++|+..+|+|||||| |++
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRL--slA~ALi~~P~VLLLDE----------PTs 2099 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKL--STAIALIGCPPLVLLDE----------PTT 2099 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCC
Confidence 22111 11 11223344566777777667888999999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
++|+..++.+.+++.++.. .+.+||++||+++++...+.|
T Consensus 2100 GLDp~sr~~l~~lL~~l~~----~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2100 GMDPQARRMLWNTIVSIIR----EGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999998754 357899999999988765544
No 396
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=9.7e-14 Score=162.69 Aligned_cols=156 Identities=24% Similarity=0.391 Sum_probs=120.3
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
....+++|+||||||||++|+.++... +..++.++.+.++ .+|.|+.+.+++.+|+.+....++||||
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence 445678999999999999999999764 4456677777766 5688999999999999998888899999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
||++.+++.+...++ ..+..+++..+|. .+++.+|++||.++ ..|+||.| ||+ .|+++.|+.+
T Consensus 285 DEIh~L~g~g~~~~g--~~d~~nlLkp~L~-------~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~ 352 (758)
T PRK11034 285 DEIHTIIGAGAASGG--QVDAANLIKPLLS-------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIE 352 (758)
T ss_pred ccHHHHhccCCCCCc--HHHHHHHHHHHHh-------CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHH
Confidence 999999877643222 2233444444443 35788999999865 57999999 997 7999999999
Q ss_pred HHHHHHHHhhcCcccc--CCCCccccc
Q psy11254 665 ARLEILKIHAGPIAKH--GEIGDAATK 689 (741)
Q Consensus 665 ~r~~i~~~~~~~~~~~--~~~~~~a~~ 689 (741)
++..|++.....+..+ ..+++.+..
T Consensus 353 ~~~~IL~~~~~~ye~~h~v~i~~~al~ 379 (758)
T PRK11034 353 ETVQIINGLKPKYEAHHDVRYTAKAVR 379 (758)
T ss_pred HHHHHHHHHHHHhhhccCCCcCHHHHH
Confidence 9999999876644433 455565554
No 397
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.52 E-value=1.8e-14 Score=146.54 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=103.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
..++++++|++++| ++|+||||||||||+++|+|.+.+..+++......
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 46899999999999 78999999999999999999987766655432110
Q ss_pred chhhHHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
...+++....... .......++..++. ......+..+|||+.+++ .+++|+..+|.+|++||
T Consensus 94 t~~~nl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv--~laral~~~p~illlDE---- 166 (218)
T cd03290 94 TVEENITFGSPFN-KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI--CVARALYQNTNIVFLDD---- 166 (218)
T ss_pred cHHHHHhhcCcCC-HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH--HHHHHHhhCCCEEEEeC----
Confidence 0000111100000 00111112222211 011235678999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHH--HHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 312 GGRRFSEGTSADREIQRTLME--LLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~--lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+ ++..+.. .+.++|++||+++.+.
T Consensus 167 ------Pt~~LD~~~~~~l~~~~ll~~~~~----~~~tii~~sH~~~~~~ 206 (218)
T cd03290 167 ------PFSALDIHLSDHLMQEGILKFLQD----DKRTLVLVTHKLQYLP 206 (218)
T ss_pred ------CccccCHHHHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHh
Confidence 999999999998887 6666543 3579999999998763
No 398
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.7e-14 Score=158.81 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=112.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~~ 247 (741)
...+++++++++| +.|+|++|||||||+.+|+|.+.+..+++........ .++
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 7889999999999 8899999999999999999999988888765422110 011
Q ss_pred HHHHhhhhhhhcccccccccccCC------Cccchh----hhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPF------YSSAIV----DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~----~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
+.....+..+..+..+++..++.. -.+..+ ..+|||+.||+ ++++|+.++++++++||
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl--aLARAll~~~~l~llDE---------- 482 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL--ALARALLSPASLLLLDE---------- 482 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH--HHHHHhcCCCCEEEecC----------
Confidence 111111111222333333333211 112222 34899999999 99999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
||+|+|.++...+.+.+.++.. +.++|++||++..+- ..|+++.+
T Consensus 483 pTA~LD~etE~~i~~~l~~l~~-----~ktvl~itHrl~~~~-------~~D~I~vl 527 (559)
T COG4988 483 PTAHLDAETEQIILQALQELAK-----QKTVLVITHRLEDAA-------DADRIVVL 527 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHHh-----CCeEEEEEcChHHHh-------cCCEEEEe
Confidence 9999999999999999988864 358999999988664 45655554
No 399
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=3.5e-14 Score=142.54 Aligned_cols=152 Identities=12% Similarity=0.144 Sum_probs=100.7
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC---CCceeeecccccchhh--H----HHHHhhhhhhhccc
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSLFVTSKE--D----MAILMGNQLKRRST 261 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~~~~~~~~~--~----~~~~~~~~~~~~~~ 261 (741)
...+++++++.+++| ++|+||||||||||+++|+|.+. +..+++.......... . +++..++...-...
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 456889999999999 78999999999999999999987 6677665422110000 0 00000000000000
Q ss_pred ccccccccC--CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 262 HHLEKTYFP--FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 262 ~~l~~~~~~--~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
...+...+. ......+..+|||+.+++ .+++|+..+|.+|++|| |++++|+..+..+.+++.++..
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl--~laral~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRV--SIAEALVSRASVLCWDN----------STRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHH--HHHHHHhhCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHHH
Confidence 000000000 003556788999999999 99999999999999999 9999999999999999998753
Q ss_pred CCCCCCeEEEE-eeCCCCCCC
Q psy11254 340 FDSLGQVKMIM-ATNRPDTLD 359 (741)
Q Consensus 340 ~~~~~~v~vI~-at~~~~~ld 359 (741)
..+.++|+ ++|+.+.+.
T Consensus 167 ---~~~~t~ii~~~h~~~~~~ 184 (202)
T cd03233 167 ---VLKTTTFVSLYQASDEIY 184 (202)
T ss_pred ---hCCCEEEEEEcCCHHHHH
Confidence 22345444 555555543
No 400
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=7e-15 Score=154.09 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=110.2
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeeccc--------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSL-------------------- 240 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~-------------------- 240 (741)
.+.+.++.++++++|++.+| ++|+||||+|||||+++|+|.+.+ ..+++....
T Consensus 23 ~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~ 102 (265)
T PRK14252 23 NFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102 (265)
T ss_pred EEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEE
Confidence 34444556899999999999 889999999999999999998764 334432210
Q ss_pred cc---------chhhHHHHHhh-------hhhhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 241 FV---------TSKEDMAILMG-------NQLKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 241 ~~---------~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
+. ...+++..... .....++...++..++. ......+..+|||+.+++ .+++|+..+|
T Consensus 103 ~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~laral~~~p 180 (265)
T PRK14252 103 MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL--CIARALATDP 180 (265)
T ss_pred EEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH--HHHHHHHcCC
Confidence 00 00111111100 00012222333333321 223456788999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
.+|++|| |++++|+.....+.+++..+.. +.++|++||+++.+...+.
T Consensus 181 ~llllDE----------Pt~gLD~~~~~~l~~~l~~l~~-----~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 181 EILLFDE----------PTSALDPIATASIEELISDLKN-----KVTILIVTHNMQQAARVSD 228 (265)
T ss_pred CEEEEeC----------CCccCCHHHHHHHHHHHHHHHh-----CCEEEEEecCHHHHHHhCC
Confidence 9999999 9999999999999999988753 3689999999987764443
No 401
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.51 E-value=1.7e-14 Score=168.37 Aligned_cols=159 Identities=15% Similarity=0.204 Sum_probs=111.9
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
++.+++++++++++| ++++||+|||||||+++|+|.+.|..|++........ .
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 356999999999999 8999999999999999999999998887764321100 0
Q ss_pred hHHHHHhhh-hhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 246 EDMAILMGN-QLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 246 ~~~~~~~~~-~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+++.....+ ..+.++..+++..++ .....+--..+|||++|++ ++++|+..+|+||++||
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi--~LARall~~~~ililDE------ 506 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI--AIARALLRDSPILILDE------ 506 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH--HHHHHHHhCCCEEEEEC------
Confidence 111110000 011222222222221 1111122355899999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
|++++|+++...+.+.+..+.. +.++|++||+++.+. .+|+.+.+.
T Consensus 507 ----ptsaLD~~t~~~i~~~l~~~~~-----~~tvI~VtHr~~~~~-------~~D~Ii~l~ 552 (582)
T PRK11176 507 ----ATSALDTESERAIQAALDELQK-----NRTSLVIAHRLSTIE-------KADEILVVE 552 (582)
T ss_pred ----ccccCCHHHHHHHHHHHHHHhC-----CCEEEEEecchHHHH-------hCCEEEEEE
Confidence 9999999999999998887642 458999999997654 566666653
No 402
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.51 E-value=1.4e-14 Score=166.96 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------chhhH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------TSKED 247 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------~~~~~ 247 (741)
+.+++++++++++| ++++||+|||||||+++|+|.+.++.|++...... +..++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 35899999999999 88999999999999999999999988887543210 00111
Q ss_pred HHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+.....+..+.++..+++..++. ..-.+--..+|||++||+ ++++|+..+|+||+|||
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRi--aiARall~~~~iliLDE--------- 496 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRL--ALARALLADAPILLLDE--------- 496 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 11111111122223333333221 111122245899999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
||+++|+++...+.+.+..+. .+.++|++||++
T Consensus 497 -~TSaLD~~te~~I~~~l~~~~-----~~~TvIiItHrl 529 (529)
T TIGR02868 497 -PTEHLDAGTESELLEDLLAAL-----SGKTVVVITHHL 529 (529)
T ss_pred -CcccCCHHHHHHHHHHHHHhc-----CCCEEEEEecCC
Confidence 999999999999998887653 346999999974
No 403
>PLN03211 ABC transporter G-25; Provisional
Probab=99.50 E-value=3e-14 Score=166.55 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=113.3
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC--ceeeecccc----------------------c
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSLF----------------------V 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~--~~~v~~~~~----------------------~ 242 (741)
..+..+.+++++++.+++| ++|+||||+|||||+++|+|.+.+. .|++..... .
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcC
Confidence 3455677999999999999 7899999999999999999998663 454432110 1
Q ss_pred chhhHHHHHh-----h----hhhhhcccccccccccCCCc-----cchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 TSKEDMAILM-----G----NQLKRRSTHHLEKTYFPFYS-----SAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 ~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+.+.... . .+...++...++.+++.... +.....+|||+++++ .+++++..+|+|||+||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv--~ia~aL~~~P~iLlLDE- 232 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRV--SIAHEMLINPSLLILDE- 232 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHH--HHHHHHHhCCCEEEEeC-
Confidence 1122222211 0 11123345566666665432 345678999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
|++++|......+.+++..+.. .+.+||++||+++
T Consensus 233 ---------PtsgLD~~~~~~l~~~L~~l~~----~g~TvI~~sH~~~ 267 (659)
T PLN03211 233 ---------PTSGLDATAAYRLVLTLGSLAQ----KGKTIVTSMHQPS 267 (659)
T ss_pred ---------CCCCcCHHHHHHHHHHHHHHHh----CCCEEEEEecCCC
Confidence 9999999999999999998864 3579999999997
No 404
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.50 E-value=1.6e-14 Score=182.11 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=120.0
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------cchh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------------------------VTSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-------------------------~~~~ 245 (741)
+..+++++++.+.+| ++|+||||+|||||+++|+|.+.++.|++..... .+..
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 356899999999999 7799999999999999999999988777653221 0111
Q ss_pred hHHHHH---hh---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 246 EDMAIL---MG---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 246 ~~~~~~---~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+.+... .+ .....++...++.+++.......+.++|||+++++ .+++|+..+|.||+||| |+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRL--sLArALi~~PkVLLLDE----------PT 1089 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL--SVAIAFVGDAKVVVLDE----------PT 1089 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC----------CC
Confidence 122211 11 11233456677778887777888999999999999 99999999999999999 99
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+++|+..++.+.++|.++. .+.+||++||+++.++.
T Consensus 1090 SGLDp~sr~~l~~lL~~l~-----~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKYR-----SGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHh-----CCCEEEEEECCHHHHHH
Confidence 9999999999999999884 25689999999987764
No 405
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.50 E-value=2.5e-14 Score=166.18 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=107.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
+.+++++++++++| ++++||||||||||+++|+|.+.+..|++....... ..+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 45899999999999 889999999999999999999999888775432100 001
Q ss_pred HHHHHhhhhhhhcccccccccccCC----------CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPF----------YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
++.....+.....+..+++..++.. ...+-...+|||++|++ ++++|+..+|+||++||
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRi--alARall~~~~ililDE--------- 501 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRL--GIARALLHDAPLLLLDE--------- 501 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 1111100111122223333333221 11223456999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|++....+.+.+..+.. +.++|++||+++.+.
T Consensus 502 -~ts~lD~~t~~~i~~~l~~~~~-----~~tviiitHr~~~~~ 538 (574)
T PRK11160 502 -PTEGLDAETERQILELLAEHAQ-----NKTVLMITHRLTGLE 538 (574)
T ss_pred -CcccCCHHHHHHHHHHHHHHcC-----CCEEEEEecChhHHH
Confidence 9999999999999999887642 458999999998764
No 406
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.7e-14 Score=155.11 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=108.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-----Cceeeecccc-------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSLF------------------------- 241 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-----~~~~v~~~~~------------------------- 241 (741)
+.++++++|++++| ++|+||||||||||+++|+|...+ ..|.+.....
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999 889999999999999999998752 3454321100
Q ss_pred --cchhhHHHHHhhh------h-hhhcccccccccccC----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 242 --VTSKEDMAILMGN------Q-LKRRSTHHLEKTYFP----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 242 --~~~~~~~~~~~~~------~-~~~~~~~~l~~~~~~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
.+..+++.+.... . .......+++..++. ....+....+|||+++++ +|++|+..+|+||++||
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl--~LARAl~~~p~IlLLDE- 251 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL--CIARAIALEPEVLLMDE- 251 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH--HHHHHHHhCCCEEEEeC-
Confidence 0111223221110 0 001122333443332 223566788999999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r 364 (741)
|++++|+.+...+.+++..+.. +.++|++||+++.+...+.|
T Consensus 252 ---------Pts~LD~~~~~~i~~~i~~l~~-----~~Tii~iTH~l~~i~~~~Dr 293 (329)
T PRK14257 252 ---------PTSALDPIATAKIEELILELKK-----KYSIIIVTHSMAQAQRISDE 293 (329)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHhc-----CCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999999987753 36999999999987643433
No 407
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.50 E-value=2.6e-14 Score=149.08 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=103.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---hhH----HHHHhhh------h---
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---KED----MAILMGN------Q--- 255 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~~~----~~~~~~~------~--- 255 (741)
..++++++|.+.+| ++|+||||+|||||+++|+|.+.+..+++........ ... +++..++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 45899999999999 7899999999999999999998887776653211000 000 0000000 0
Q ss_pred ---h-----hhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 256 ---L-----KRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 256 ---~-----~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
. .......++.. ++..........+|||+.+++ ++++|+..+|++|++||
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl--~laral~~~p~llllDE--------- 182 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLF--CLARAFVRKSSILIMDE--------- 182 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC---------
Confidence 0 00001111111 112222334568999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+++..+. .+.++|++||+++.+.
T Consensus 183 -Pt~gLD~~~~~~l~~~l~~~~-----~~~tiii~sh~~~~~~ 219 (257)
T cd03288 183 -ATASIDMATENILQKVVMTAF-----ADRTVVTIAHRVSTIL 219 (257)
T ss_pred -CccCCCHHHHHHHHHHHHHhc-----CCCEEEEEecChHHHH
Confidence 999999999999999988753 2468999999999875
No 408
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.50 E-value=1.8e-14 Score=171.17 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=110.0
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~ 245 (741)
.+.+++++++++++| ++++||+|||||||+|+|+|.+.|..|++....... ..
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 456899999999999 889999999999999999999999888775432100 01
Q ss_pred hHHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++..... .....+..+++..++. ....+--..+|||++|++ ++++|+..+|+||+|||
T Consensus 545 eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi--alARAll~~p~iLiLDE------- 614 (686)
T TIGR03797 545 ENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL--LIARALVRKPRILLFDE------- 614 (686)
T ss_pred HHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 11111000 1112222333333221 111122356899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+++.+.+.+.+..+. .++|++||+++.+. .+|+.+.+
T Consensus 615 ---pTS~LD~~te~~i~~~L~~~~-------~T~IiItHr~~~i~-------~~D~Iivl 657 (686)
T TIGR03797 615 ---ATSALDNRTQAIVSESLERLK-------VTRIVIAHRLSTIR-------NADRIYVL 657 (686)
T ss_pred ---CccCCCHHHHHHHHHHHHHhC-------CeEEEEecChHHHH-------cCCEEEEE
Confidence 999999999999988887752 38999999987664 45555544
No 409
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.2e-14 Score=145.12 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=113.1
Q ss_pred hhCCCCCC-C-ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------------chhh
Q psy11254 199 RVGITPPK-G-CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------------TSKE 246 (741)
Q Consensus 199 ~~~l~~~~-G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------------~~~~ 246 (741)
++++..+. | ..|.|++|+|||||+++|||.+.|+-+.+...... +...
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 34566665 7 66999999999999999999999988877653211 1111
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
++.+................+|+.+...+.+.++|||.+|+| ++.+|+..+|.+|++|| |-+++|..-
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRV--AIGRALLt~P~LLLmDE----------PLaSLD~~R 163 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRV--AIGRALLTAPELLLMDE----------PLASLDLPR 163 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHH--HHHHHHhcCCCeeeecC----------chhhcccch
Confidence 222222222223344555667788888899999999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++.++.++..+.. ..++.|+.+||.++++-
T Consensus 164 K~EilpylERL~~---e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 164 KREILPYLERLRD---EINIPILYVSHSLDEVL 193 (352)
T ss_pred hhHHHHHHHHHHH---hcCCCEEEEecCHHHHH
Confidence 9999999988875 56889999999888764
No 410
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.49 E-value=2.2e-14 Score=171.14 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=109.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~ 245 (741)
.+.+++++++++++| ++++||+|||||||+++|+|.+.+..|++....... ..
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 356899999999999 889999999999999999999999888775432100 00
Q ss_pred hHHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.....+....++..+++..++ .....+--..+|||++|++ ++++|+..+|+||+|||
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi--aLARall~~p~iliLDE------- 641 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL--EIARALVRNPSILILDE------- 641 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH--HHHHHHhhCCCEEEEEC-------
Confidence 111110001111222222222222 1111223356899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+++.+.+.+.+... +.++|++||+++.+. .+|+.+.+
T Consensus 642 ---ptS~LD~~te~~i~~~l~~~-------~~T~IiitHrl~~i~-------~~D~Iivl 684 (710)
T TIGR03796 642 ---ATSALDPETEKIIDDNLRRR-------GCTCIIVAHRLSTIR-------DCDEIIVL 684 (710)
T ss_pred ---ccccCCHHHHHHHHHHHHhc-------CCEEEEEecCHHHHH-------hCCEEEEE
Confidence 99999999999998888652 358999999998764 45555555
No 411
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.49 E-value=2e-14 Score=167.98 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=110.9
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~ 245 (741)
++.+++++++++++| ++++||+|||||||+++|+|.+ |..|++...... +..
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 346899999999999 8899999999999999999999 877777543210 001
Q ss_pred hHHHHHhhhhhhhcccccccccc-----------cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTY-----------FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.....+..++.+..+++..+ +...-.+--..+|||++||+ ++++|+..+|+||+|||
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi--alARAll~~~~IliLDE------- 511 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL--ALARALLQPCQLLLLDE------- 511 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 11111101111122222222222 11111223356899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
|++++|.++.+.+.+.+.++. .+.++|++||+++.+. .+|+.+.+.
T Consensus 512 ---~TSaLD~~te~~i~~~l~~~~-----~~~TvIiItHrl~~i~-------~aD~Iivl~ 557 (588)
T PRK11174 512 ---PTASLDAHSEQLVMQALNAAS-----RRQTTLMVTHQLEDLA-------QWDQIWVMQ 557 (588)
T ss_pred ---CccCCCHHHHHHHHHHHHHHh-----CCCEEEEEecChHHHH-------hCCEEEEEe
Confidence 999999999999998887764 2458999999997664 567666663
No 412
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.49 E-value=3e-14 Score=165.35 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=105.9
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~ 245 (741)
+..+++++++++++| ++++||||||||||+++|+|.+.+..|++....... ..
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 346899999999999 889999999999999999999999888775421100 01
Q ss_pred hHHHHHhhhhhhhcccccccccc-----------cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTY-----------FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.....+.........++..+ +.....+....+|||++|++ ++++|+..+|+|++|||
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi--~lARall~~~~illlDE------- 477 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI--SIARALLLNAEILILDD------- 477 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEEC-------
Confidence 11111000001111112222211 11112233456999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|++....+.+.+..+. .+.++|++||+++.+.
T Consensus 478 ---pts~LD~~~~~~i~~~l~~~~-----~~~tii~itH~~~~~~ 514 (569)
T PRK10789 478 ---ALSAVDGRTEHQILHNLRQWG-----EGRTVIISAHRLSALT 514 (569)
T ss_pred ---ccccCCHHHHHHHHHHHHHHh-----CCCEEEEEecchhHHH
Confidence 999999999999999987763 2468999999987654
No 413
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.49 E-value=3.6e-14 Score=149.25 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=100.6
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------chhhHHHHHhhhhhhhc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------TSKEDMAILMGNQLKRR 259 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------~~~~~~~~~~~~~~~~~ 259 (741)
+.++++++|++.+| ++|+||||+|||||+++|+|.+.+..+.+.....+ ...+++....... ..+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~-~~~ 128 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYD-EYR 128 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccC-HHH
Confidence 45889999999999 78999999999999999999998877766532100 1111111100000 000
Q ss_pred ccccccccccC-------C----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 260 STHHLEKTYFP-------F----YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 260 ~~~~l~~~~~~-------~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
....++..++. . ........+|||+.+++ +|++|+..+|.+|++|| |++++|+..+.
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv--~lAraL~~~p~iLiLDE----------Pt~gLD~~~~~ 196 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI--SLARAVYKDADLYLLDS----------PFGYLDVFTEK 196 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCccCCHHHHH
Confidence 00111111110 0 11223468999999999 99999999999999999 99999999998
Q ss_pred HHHHHH-HhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 329 TLMELL-NQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 329 ~l~~lL-~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.+.+.+ ..+.. +.+||++||+++.+.
T Consensus 197 ~l~~~ll~~~~~-----~~tIiiisH~~~~~~ 223 (282)
T cd03291 197 EIFESCVCKLMA-----NKTRILVTSKMEHLK 223 (282)
T ss_pred HHHHHHHHHhhC-----CCEEEEEeCChHHHH
Confidence 888754 44432 468999999998764
No 414
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.2e-14 Score=151.92 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=119.1
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----cch---hhHHHHHhh----
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----VTS---KEDMAILMG---- 253 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----~~~---~~~~~~~~~---- 253 (741)
+.+|-..+.+++++++++..| +.++|++||||||+++.++|.+.++.|++..+.. ... .+.+..+.+
T Consensus 344 F~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 344 FTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred eecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 344555567999999999999 9999999999999999999999999888875431 111 111111111
Q ss_pred --------------hhhhhcccccccccccCC-----------CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 254 --------------NQLKRRSTHHLEKTYFPF-----------YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 254 --------------~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+......++.+++.. ...+--..+|||+.+|+ ++++++.++..+++|||
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL--AlAR~LL~dapl~lLDE- 500 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL--ALARALLHDAPLWLLDE- 500 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH--HHHHHHHcCCCeEEecC-
Confidence 111222333334443322 22333456899999999 99999999988999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
||.++|+.+.+.+++++.+.- .+.++|++||+...++ +||+++.+.
T Consensus 501 ---------PTegLD~~TE~~vL~ll~~~~-----~~kTll~vTHrL~~le-------~~drIivl~ 546 (573)
T COG4987 501 ---------PTEGLDPITERQVLALLFEHA-----EGKTLLMVTHRLRGLE-------RMDRIIVLD 546 (573)
T ss_pred ---------CcccCChhhHHHHHHHHHHHh-----cCCeEEEEecccccHh-------hcCEEEEEE
Confidence 999999999999988886543 2558999999998887 778766653
No 415
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=7e-15 Score=140.12 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=124.8
Q ss_pred HHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------
Q psy11254 185 EVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------------- 241 (741)
Q Consensus 185 e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------------- 241 (741)
+.+...|+.+.+.+++++.+.+| +.|.||||+||||...++.|...++.+++.....
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence 34566788999999999999999 8899999999999999999999999888865321
Q ss_pred ------cchhhHHHHHhh------h--hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 242 ------VTSKEDMAILMG------N--QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 242 ------~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
++..+++..... . +.+.+...+++.+.+.+........+|||.++++ -+++|++.+|..++|||
T Consensus 88 ~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~--EIARaLa~~P~fiLLDE 165 (243)
T COG1137 88 ASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV--EIARALAANPKFILLDE 165 (243)
T ss_pred chHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH--HHHHHHhcCCCEEEecC
Confidence 111112221111 1 1112345677778888888888899999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|.++.||-....+..++..+.. .++-|++|-|+..+
T Consensus 166 ----------PFAGVDPiaV~dIq~iI~~L~~----rgiGvLITDHNVRE 201 (243)
T COG1137 166 ----------PFAGVDPIAVIDIQRIIKHLKD----RGIGVLITDHNVRE 201 (243)
T ss_pred ----------CccCCCchhHHHHHHHHHHHHh----CCceEEEccccHHH
Confidence 9999999999999999988876 57889999997654
No 416
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=2.9e-14 Score=164.45 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=105.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
+.+++++++++++| ++++||+|||||||+++|+|...+..|++....... ..+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 35899999999999 889999999999999999999999887775331100 001
Q ss_pred HHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+..+......++..++. ....+....+|||++|++ ++++|+..+|+|+++||
T Consensus 415 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri--~laRal~~~~~ililDE-------- 484 (529)
T TIGR02857 415 NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL--ALARAFLRDAPLLLLDE-------- 484 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 111100000111222222222221 111223456899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+...+.+.+.+..+. .+.++|++||+++.+
T Consensus 485 --~ts~lD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 485 --PTAHLDAETEALVTEALRALA-----QGRTVLLVTHRLALA 520 (529)
T ss_pred --cccccCHHHHHHHHHHHHHhc-----CCCEEEEEecCHHHH
Confidence 999999999999998887763 246999999998655
No 417
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.48 E-value=2.9e-14 Score=169.50 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=110.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
.+.+++++++++++| ++++||+|||||||+++|+|.+.+..|.+........ .
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 356899999999999 8899999999999999999999998887754321000 0
Q ss_pred hHHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.....+....++..+++..++ .....+--..+|||++|++ ++++|+..+|+|++|||
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl--alARall~~p~iliLDE------- 627 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV--ALARALLRDPPILLLDE------- 627 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 111110000011122222222221 1111233356999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+++...+.+.+..+.. +.++|++||+++.+. ..|+.+.+
T Consensus 628 ---~Ts~LD~~te~~i~~~l~~~~~-----~~T~iiItHrl~~~~-------~~D~iivl 672 (694)
T TIGR03375 628 ---PTSAMDNRSEERFKDRLKRWLA-----GKTLVLVTHRTSLLD-------LVDRIIVM 672 (694)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHhC-----CCEEEEEecCHHHHH-------hCCEEEEE
Confidence 9999999999999999887642 458999999997654 44555544
No 418
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.47 E-value=3.7e-14 Score=165.22 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=111.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~ 246 (741)
+.+++++++++++| ++++||+|+|||||+++|+|.+.+..|.+........ .+
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 424 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIAN 424 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHH
Confidence 45899999999999 8899999999999999999999998887764321100 00
Q ss_pred HHHHHh-hhhhhhcccccccccccCC-----------CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 247 DMAILM-GNQLKRRSTHHLEKTYFPF-----------YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
++.... .+....++..+++..++.. .-.+--..+|||++|++ ++++|+..+|+|++|||
T Consensus 425 Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi--aLARall~~~~illLDE------- 495 (571)
T TIGR02203 425 NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL--AIARALLKDAPILILDE------- 495 (571)
T ss_pred HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 111000 0111222333333333211 11122345899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|....+.+.+.+..+.. +.++|++||++..+. ..|+.+.+
T Consensus 496 ---pts~LD~~~~~~i~~~L~~~~~-----~~tiIiitH~~~~~~-------~~D~ii~l 540 (571)
T TIGR02203 496 ---ATSALDNESERLVQAALERLMQ-----GRTTLVIAHRLSTIE-------KADRIVVM 540 (571)
T ss_pred ---ccccCCHHHHHHHHHHHHHHhC-----CCEEEEEehhhHHHH-------hCCEEEEE
Confidence 9999999999999998887632 458999999987654 45666665
No 419
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=3.8e-14 Score=128.75 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=119.1
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS------------------- 244 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~------------------- 244 (741)
++.+.+...-++.++++++.+| +-|.||+|||||||+-.++|.+...| ++++...+..
T Consensus 7 nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F-~~~G~~~l~~~~l~~lPa~qRq~GiLFQD 85 (213)
T COG4136 7 NVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF-SCTGELWLNEQRLDMLPAAQRQIGILFQD 85 (213)
T ss_pred eeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc-ceeeEEEECCeeccccchhhhheeeeecc
Confidence 3445566777888999999999 56999999999999999999997765 2333211111
Q ss_pred ---------hhHH-----HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 245 ---------KEDM-----AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 245 ---------~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
..++ ..+.|+..++.+...++..++.....+...++|||++.++ ++-+++..+|..+++||
T Consensus 86 ~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARv--aL~R~Lla~Pk~lLLDE--- 160 (213)
T COG4136 86 ALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARV--ALLRALLAQPKALLLDE--- 160 (213)
T ss_pred cccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHH--HHHHHHHhCcceeeeCC---
Confidence 0111 1123444445566778888888777888899999999988 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHH-HhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELL-NQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL-~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|.+.+|...+..+.++. ++.. .-++..|.+|||..+++
T Consensus 161 -------PFS~LD~ALR~qfR~wVFs~~r----~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 161 -------PFSRLDVALRDQFRQWVFSEVR----AAGIPTVQVTHDLQDVP 199 (213)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHH----hcCCCeEEEecccccCC
Confidence 99999988888887775 3333 25778999999999886
No 420
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.47 E-value=2.6e-14 Score=167.07 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=111.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
+.+++++++++++| ++++|++|||||||+++|+|.+.|..|.+......- ..+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 45899999999999 899999999999999999999999887775432100 011
Q ss_pred HHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.... +..+.++..+++..++. ....+.-..+|||++|++ ++++|+..+|+||++||
T Consensus 434 NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi--alARaLl~~~~illlDE-------- 502 (592)
T PRK10790 434 NVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL--ALARVLVQTPQILILDE-------- 502 (592)
T ss_pred HHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHHhCCCEEEEeC--------
Confidence 111110 11112223333333221 111223356899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+++.+.+.+.+..+.. +.++|++||+++.+. .+|+.+.+
T Consensus 503 --pts~LD~~t~~~i~~~l~~~~~-----~~tvIivtHr~~~l~-------~~D~ii~l 547 (592)
T PRK10790 503 --ATANIDSGTEQAIQQALAAVRE-----HTTLVVIAHRLSTIV-------EADTILVL 547 (592)
T ss_pred --CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEecchHHHH-------hCCEEEEE
Confidence 9999999999999998877642 358999999987664 45666555
No 421
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.47 E-value=8.4e-14 Score=160.96 Aligned_cols=150 Identities=18% Similarity=0.228 Sum_probs=105.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++++||||||||||+++++|.+.+..|++...... +..+
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 410 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHH
Confidence 46899999999999 88999999999999999999999887776432110 0011
Q ss_pred HHHHHhhhhhhhccccc---------cccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHH---------LEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~---------l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+......... ++.+ ++.....+....+|||++|++ ++++|+..+|++|++||
T Consensus 411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl--~lARall~~~~ililDE-------- 480 (544)
T TIGR01842 411 NIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI--ALARALYGDPKLVVLDE-------- 480 (544)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 11100000001111111 1111 222222334567999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|++....+.+.+..+.. .+.++|++||+++.++
T Consensus 481 --pts~LD~~~~~~i~~~l~~~~~----~~~tvi~ith~~~~~~ 518 (544)
T TIGR01842 481 --PNSNLDEEGEQALANAIKALKA----RGITVVVITHRPSLLG 518 (544)
T ss_pred --CccccCHHHHHHHHHHHHHHhh----CCCEEEEEeCCHHHHH
Confidence 9999999999999998887632 2458999999987543
No 422
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.47 E-value=4e-14 Score=166.32 Aligned_cols=156 Identities=14% Similarity=0.231 Sum_probs=109.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----c------c---chhhHHHHHh----
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----F------V---TSKEDMAILM---- 252 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~------~---~~~~~~~~~~---- 252 (741)
++.+++++++++++| ++|+||||||||||+++|+|.+.+..+.+.... + + +..+++....
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 346899999999999 889999999999999999999877666553210 0 0 1112222110
Q ss_pred ---hhhhhhcccccccccccCCCccc---------hhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 253 ---GNQLKRRSTHHLEKTYFPFYSSA---------IVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 253 ---~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.......+...++..++...... ....+|||++|++ ++++|+..+|.+++||| |++
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl--~iARal~~~p~illLDE----------pts 611 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRI--AMARLFYHKPQFAILDE----------CTS 611 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHH--HHHHHHHcCCCEEEEeC----------Ccc
Confidence 00111233344444444322111 2368999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
++|++....+.+++.+. +.++|++||+++.+. ..|+.+.+
T Consensus 612 ~LD~~~~~~l~~~l~~~-------~~tvI~isH~~~~~~-------~~d~il~l 651 (659)
T TIGR00954 612 AVSVDVEGYMYRLCREF-------GITLFSVSHRKSLWK-------YHEYLLYM 651 (659)
T ss_pred CCCHHHHHHHHHHHHHc-------CCEEEEEeCchHHHH-------hCCEEEEE
Confidence 99999999998888653 458999999988653 34555555
No 423
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.47 E-value=4.6e-14 Score=164.20 Aligned_cols=157 Identities=13% Similarity=0.177 Sum_probs=109.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
..+++++++++++| ++++||||+|||||+++|+|.+.+..|++...... +..+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 427 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHH
Confidence 35799999999999 88999999999999999999999887776532110 0001
Q ss_pred HHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+...+.....++.. ++.....+....+|||++|++ ++++|+..+|+||++||
T Consensus 428 Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl--~lARall~~p~ililDE-------- 497 (585)
T TIGR01192 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL--AIARAILKNAPILVLDE-------- 497 (585)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEEC--------
Confidence 111100000001111111111 222222334567899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|++..+.+.+.+..+.. +.++|++||+++.+. ..|+.+.+
T Consensus 498 --pts~LD~~~~~~i~~~l~~~~~-----~~tvI~isH~~~~~~-------~~d~i~~l 542 (585)
T TIGR01192 498 --ATSALDVETEARVKNAIDALRK-----NRTTFIIAHRLSTVR-------NADLVLFL 542 (585)
T ss_pred --CccCCCHHHHHHHHHHHHHHhC-----CCEEEEEEcChHHHH-------cCCEEEEE
Confidence 9999999999999999887642 468999999997764 35555555
No 424
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.46 E-value=4.3e-14 Score=164.95 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=108.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++++||+|||||||+++|+|.+.+..|.+...... +..+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHH
Confidence 45899999999999 88999999999999999999999887776432110 0011
Q ss_pred HHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+..+..+...++..++ .....+--..+|||++||+ ++++|+..+|+|++|||
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi--alARall~~~~iliLDE-------- 497 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL--AIARALLKDPPILILDE-------- 497 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC--------
Confidence 11111000011112222222221 1111222345899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+.....+.+.+..+. .+.++|++||+++.+. ..|+.+.+
T Consensus 498 --pts~LD~~t~~~i~~~l~~~~-----~~~tvIiitHr~~~~~-------~~D~ii~l 542 (588)
T PRK13657 498 --ATSALDVETEAKVKAALDELM-----KGRTTFIIAHRLSTVR-------NADRILVF 542 (588)
T ss_pred --CccCCCHHHHHHHHHHHHHHh-----cCCEEEEEEecHHHHH-------hCCEEEEE
Confidence 999999999999998887763 2468999999986553 45666655
No 425
>KOG0058|consensus
Probab=99.46 E-value=7.2e-14 Score=156.74 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=110.4
Q ss_pred hhccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------
Q psy11254 187 IELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS------------------- 244 (741)
Q Consensus 187 i~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~------------------- 244 (741)
+.||-. +.+++++++|++++| +.|+||+|+||||++..|-+.+.|..|++........
T Consensus 473 FaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred eecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 445543 346999999999999 8899999999999999999999999888865422111
Q ss_pred ------hhHHHHHhhhhhhhcccccccc-----------cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 245 ------KEDMAILMGNQLKRRSTHHLEK-----------TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 245 ------~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
.+++.+-..+...+.+..+.+. .++...-.+.-.++|||++||+ ++++|+..+|+||+|||
T Consensus 553 LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI--AIARALlr~P~VLILDE 630 (716)
T KOG0058|consen 553 LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI--AIARALLRNPRVLILDE 630 (716)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH--HHHHHHhcCCCEEEEec
Confidence 1222221111101111111110 1122222334457899999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.|+.+|.+....+.+.|..+-. +.+||+++|+...+.
T Consensus 631 ----------ATSALDaeSE~lVq~aL~~~~~-----~rTVlvIAHRLSTV~ 667 (716)
T KOG0058|consen 631 ----------ATSALDAESEYLVQEALDRLMQ-----GRTVLVIAHRLSTVR 667 (716)
T ss_pred ----------hhhhcchhhHHHHHHHHHHhhc-----CCeEEEEehhhhHhh
Confidence 8999999998888888866543 358999999999886
No 426
>KOG0057|consensus
Probab=99.45 E-value=6.9e-14 Score=151.68 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=108.6
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~ 245 (741)
.++++++++|++|+| +.++|+|||||||++|+|-+... ..|++-..... +..
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl 442 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTIL 442 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHH
Confidence 344999999999999 99999999999999999999886 54544321110 000
Q ss_pred hHHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.++.+-.-..-...+....+..++. ..-.+.-..+|||++|++ ++++|...+|.|+++||
T Consensus 443 ~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv--slaRa~lKda~Il~~DE------- 513 (591)
T KOG0057|consen 443 YNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV--SLARAFLKDAPILLLDE------- 513 (591)
T ss_pred HHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH--HHHHHHhcCCCeEEecC-------
Confidence 0111100000011111111111111 111233346799999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 376 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~ 376 (741)
+|+++|.++-+.+.+.+... .++.++|++.|+.+.++ .||+.+.+..
T Consensus 514 ---aTS~LD~~TE~~i~~~i~~~-----~~~rTvI~IvH~l~ll~-------~~DkI~~l~n 560 (591)
T KOG0057|consen 514 ---ATSALDSETEREILDMIMDV-----MSGRTVIMIVHRLDLLK-------DFDKIIVLDN 560 (591)
T ss_pred ---cccccchhhHHHHHHHHHHh-----cCCCeEEEEEecchhHh-------cCCEEEEEEC
Confidence 99999999988888887652 24679999999999987 8888777644
No 427
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=147.63 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=125.7
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
...|..-...+++++++.+| ..|.|.||+|||||+++|.|.+.|+.+++.....
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 33455556778899999999 6799999999999999999999999888864311
Q ss_pred ---cchhhHHHHHh---------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 242 ---VTSKEDMAILM---------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 242 ---~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
++..+++..-. ......++....+..+++.+.+..+..++-|.+|++ -+-+|+..+|.+|+|||
T Consensus 91 v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRV--EIlKaLyr~a~iLILDE-- 166 (501)
T COG3845 91 VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRV--EILKALYRGARLLILDE-- 166 (501)
T ss_pred ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHH--HHHHHHhcCCCEEEEcC--
Confidence 11122222111 113455677778888999999999999999999999 88899999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
||+-+.|.....|.+.+..+.. .+.+||++||..+++-.
T Consensus 167 --------PTaVLTP~E~~~lf~~l~~l~~----~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 167 --------PTAVLTPQEADELFEILRRLAA----EGKTIIFITHKLKEVMA 205 (501)
T ss_pred --------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeccHHHHHH
Confidence 9999999999999999998875 67899999998887654
No 428
>KOG0927|consensus
Probab=99.45 E-value=1.1e-13 Score=149.45 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=114.8
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh---h--------------HHHHHhh-h
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK---E--------------DMAILMG-N 254 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~---~--------------~~~~~~~-~ 254 (741)
-+|.+++|-+..+ +.++||||||||||+|.+.|.+.|..|.++...+.... . .+..... .
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 5778777776666 89999999999999999999999999888765332211 0 0000111 1
Q ss_pred hhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHH
Q psy11254 255 QLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 333 (741)
Q Consensus 255 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~l 333 (741)
.-...+...+..+|+. .....+++++|+|++.+| +|+++....|.+|+||| |++|+|.+....+.+.
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rV--lFa~l~~kqP~lLlLDE----------PtnhLDi~tid~laea 551 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRV--LFARLAVKQPHLLLLDE----------PTNHLDIETIDALAEA 551 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhH--HHHHHHhcCCcEEEecC----------CCcCCCchhHHHHHHH
Confidence 1122344556666766 335678899999999999 99999999999999999 9999999999999999
Q ss_pred HHhccCCCCCCCeEEEEeeCCCCCCCcc
Q psy11254 334 LNQMDGFDSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 334 L~~l~~~~~~~~v~vI~at~~~~~ld~a 361 (741)
+++++| .||++|||...|+..
T Consensus 552 iNe~~G-------gvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 552 INEFPG-------GVVLVSHDFRLISQV 572 (614)
T ss_pred HhccCC-------ceeeeechhhHHHHH
Confidence 999988 689999998877643
No 429
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.45 E-value=9.3e-14 Score=160.60 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=107.9
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---h----hHHHH------Hhhh----
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---K----EDMAI------LMGN---- 254 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~----~~~~~------~~~~---- 254 (741)
+.+++++++++++| ++|+||||||||||+++|+|.+.+..|.+........ . ..+++ +...
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 415 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP 415 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcc
Confidence 45899999999999 8899999999999999999999998887754321100 0 00000 0000
Q ss_pred ----hhhhcccccccccccCCCcc---ch--hhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 255 ----QLKRRSTHHLEKTYFPFYSS---AI--VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 255 ----~~~~~~~~~l~~~~~~~~~~---~~--~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
.....+...++..++..... .. -..+|||++|++ ++++|+..+|+||++|| |++++|++
T Consensus 416 n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl--~lARal~~~~~ililDE----------~ts~LD~~ 483 (547)
T PRK10522 416 EGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL--ALLLALAEERDILLLDE----------WAADQDPH 483 (547)
T ss_pred ccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CCCCCCHH
Confidence 01112222333333322111 11 247999999999 99999999999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
....+.+.+...-. ..+.++|++||+++.+. ..|+.+.+
T Consensus 484 ~~~~i~~~l~~~~~---~~~~tvi~itH~~~~~~-------~~d~i~~l 522 (547)
T PRK10522 484 FRREFYQVLLPLLQ---EMGKTIFAISHDDHYFI-------HADRLLEM 522 (547)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEEEEechHHHH-------hCCEEEEE
Confidence 99888877754321 12468999999986543 44555554
No 430
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.45 E-value=1.7e-13 Score=139.84 Aligned_cols=152 Identities=15% Similarity=0.208 Sum_probs=101.7
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHH-HHHHH--h-----------------c-CCCcee-------eecc
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLA-RAVAS--Q-----------------L-DANFLK-------VVSS 239 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~-r~ia~--~-----------------l-~~~~~~-------v~~~ 239 (741)
+.....++++++|++++| ++|+||||||||||+ ..+.. . + .+.... +...
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAID 83 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEec
Confidence 344556889999999999 789999999999996 22221 0 0 010000 0000
Q ss_pred ccc---chhhHHH-------HHh---h-hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCC--eE
Q psy11254 240 LFV---TSKEDMA-------ILM---G-NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQP--CI 302 (741)
Q Consensus 240 ~~~---~~~~~~~-------~~~---~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P--~I 302 (741)
... .....+. ... . .....+ ...++.+++.. .....+..+|||+.+++ .+++|+..+| .+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~laral~~~p~~~l 160 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRI--RLATQIGSGLTGVL 160 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHH--HHHHHHHhCCCCCE
Confidence 000 0000100 000 1 111122 34566666654 35678899999999999 9999999998 59
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++|| |++++|+..+..+.+++..+.. .+.++|++||+++.+
T Consensus 161 lllDE----------Pt~gLD~~~~~~l~~~l~~~~~----~g~tii~itH~~~~~ 202 (226)
T cd03270 161 YVLDE----------PSIGLHPRDNDRLIETLKRLRD----LGNTVLVVEHDEDTI 202 (226)
T ss_pred EEEeC----------CccCCCHHHHHHHHHHHHHHHh----CCCEEEEEEeCHHHH
Confidence 99999 9999999999999999988753 356899999998765
No 431
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.45 E-value=7.8e-14 Score=166.23 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=109.4
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
++.+++++++++++| ++++||+|||||||+++|+|.+.|..|++........ .
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 356899999999999 8999999999999999999999998887754321000 0
Q ss_pred hHHHHH-hhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 246 EDMAIL-MGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+++... ..+.....+..+++..++ ...-.+--..+|||++|++ ++++|+..+|+||+|||
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi--alARall~~p~iliLDE------ 637 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI--ALARALLTDSKVLILDE------ 637 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH--HHHHHHhhCCCEEEEeC------
Confidence 111111 000011122222222221 1111223356899999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
||+++|++....+.+.+..+. +.++|++||+++.+. ..|+.+.+
T Consensus 638 ----~Ts~LD~~te~~i~~~L~~~~------~~T~IiitHr~~~~~-------~~D~i~~l 681 (708)
T TIGR01193 638 ----STSNLDTITEKKIVNNLLNLQ------DKTIIFVAHRLSVAK-------QSDKIIVL 681 (708)
T ss_pred ----ccccCCHHHHHHHHHHHHHhc------CCEEEEEecchHHHH-------cCCEEEEE
Confidence 999999999999988887642 348999999997664 44555554
No 432
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.44 E-value=1.7e-13 Score=162.83 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=107.1
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
++.+++++++++++| ++++||||||||||+++|+|.+.+..|++........ .
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 456899999999999 8899999999999999999999998887754321100 0
Q ss_pred hHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.....+.....+..+++.. |+.....+-...+|||++|++ ++++|+..+|+||++||
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri--~lARall~~~~ililDE------- 619 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI--AIARALVGNPRILIFDE------- 619 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH--HHHHHHHhCCCEEEEEC-------
Confidence 1111100000011111112221 222222333467999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+..+. .+.++|++||+++.+.
T Consensus 620 ---pts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 620 ---ATSALDYESEALIMRNMREIC-----RGRTVIIIAHRLSTVR 656 (694)
T ss_pred ---CCcCCCHHHHHHHHHHHHHHh-----CCCEEEEEeCChHHHH
Confidence 999999999999999998764 2468999999998764
No 433
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.43 E-value=3.1e-13 Score=134.77 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=93.7
Q ss_pred hhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceee-ec----ccccchh--------hHHHHHhhhh-------h
Q psy11254 198 QRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKV-VS----SLFVTSK--------EDMAILMGNQ-------L 256 (741)
Q Consensus 198 ~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v-~~----~~~~~~~--------~~~~~~~~~~-------~ 256 (741)
+++++++..| ++|+||||+|||||+++|++.+++..+.. .. .....+. ..++...++. .
T Consensus 14 ~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~ 93 (197)
T cd03278 14 DKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIIS 93 (197)
T ss_pred CCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEe
Confidence 5567777788 67999999999999999998875431100 00 0000000 0000000000 0
Q ss_pred hhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHHH
Q psy11254 257 KRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332 (741)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~ 332 (741)
..++..+++. .......+..+|||+++++ .+++++. ..|.++++|| |++++|+.....+.+
T Consensus 94 ~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl--~la~~l~~~~~~~~~illlDE----------P~~~LD~~~~~~l~~ 158 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQRLSLLSGGEKALT--ALALLFAIFRVRPSPFCVLDE----------VDAALDDANVERFAR 158 (197)
T ss_pred hhhHHHHHhC---CCccccchhhcCHHHHHHH--HHHHHHHHhccCCCCEEEEeC----------CcccCCHHHHHHHHH
Confidence 1222233333 2234567789999999998 8888875 4568999999 999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 333 LLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 333 lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++.++.. +.+||++||+++.++
T Consensus 159 ~l~~~~~-----~~tiIiitH~~~~~~ 180 (197)
T cd03278 159 LLKEFSK-----ETQFIVITHRKGTME 180 (197)
T ss_pred HHHHhcc-----CCEEEEEECCHHHHh
Confidence 9988753 358999999987653
No 434
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.43 E-value=1.7e-13 Score=159.73 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=109.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++++||+|+|||||+++|+|.+.+..|.+...... +..+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 45899999999999 88999999999999999999999887776532110 0011
Q ss_pred HHHHHhhhhhhhcccccccccc-----------cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTY-----------FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+....++...++..+ +.....+....+|||++|++ .+++|+..+|++|++||
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl--~laRal~~~~~ililDE-------- 502 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI--AIARAILKDAPILLLDE-------- 502 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH--HHHHHHHhCCCeEEEeC--------
Confidence 1111000001112222222222 11111233456999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|+...+.+.+.+..+.. +.++|++||+++.+. .+|+.+.+
T Consensus 503 --pts~lD~~~~~~i~~~l~~~~~-----~~t~IiitH~~~~~~-------~~d~vi~l 547 (576)
T TIGR02204 503 --ATSALDAESEQLVQQALETLMK-----GRTTLIIAHRLATVL-------KADRIVVM 547 (576)
T ss_pred --cccccCHHHHHHHHHHHHHHhC-----CCEEEEEecchHHHH-------hCCEEEEE
Confidence 9999999999999888877632 469999999987654 44555554
No 435
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=7.3e-13 Score=158.87 Aligned_cols=146 Identities=25% Similarity=0.380 Sum_probs=114.7
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHh-cCCeE
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARN-HQPCI 586 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~-~~p~V 586 (741)
......+++|+||||||||++++.+|..+ +..++.++.+.++ .+|.|+.+..++.+|+.+.. ..|+|
T Consensus 195 ~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~I 274 (857)
T PRK10865 195 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVI 274 (857)
T ss_pred hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeE
Confidence 34445678999999999999999999987 5678888888876 56889999999999998643 56899
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCC
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p 661 (741)
|||||++.+.+.+.+.++ . ....++...| ..+.+.+|+||+..+ .+|+|+.| ||+ .|.++.|
T Consensus 275 LfIDEih~l~~~~~~~~~-~--d~~~~lkp~l-------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP 341 (857)
T PRK10865 275 LFIDELHTMVGAGKADGA-M--DAGNMLKPAL-------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEP 341 (857)
T ss_pred EEEecHHHhccCCCCccc-h--hHHHHhcchh-------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCC
Confidence 999999999876643322 1 2334443333 346788999999887 48999999 998 5789999
Q ss_pred CHHHHHHHHHHhhcCcc
Q psy11254 662 NEQARLEILKIHAGPIA 678 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~ 678 (741)
+.+++..|++.....+.
T Consensus 342 ~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 342 SVEDTIAILRGLKERYE 358 (857)
T ss_pred CHHHHHHHHHHHhhhhc
Confidence 99999999987765443
No 436
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=146.56 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=109.1
Q ss_pred cCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--c-----------------------
Q psy11254 190 PLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--V----------------------- 242 (741)
Q Consensus 190 ~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--~----------------------- 242 (741)
|-..+.++++++|.+..| +.++||+|+|||||+|+|.|.+.+..+.|..... .
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence 555668999999999998 7899999999999999999999888777654211 0
Q ss_pred chhhHHHHHhhhhhhhcccc------cccc-----cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 243 TSKEDMAILMGNQLKRRSTH------HLEK-----TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~------~l~~-----~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
+..++++....+...+.+.. +-+. .|+...-.+--..+|||++|++ .+++|+-.+|.+++|||
T Consensus 425 TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI--aLARAlYG~P~lvVLDE---- 498 (580)
T COG4618 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI--ALARALYGDPFLVVLDE---- 498 (580)
T ss_pred cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH--HHHHHHcCCCcEEEecC----
Confidence 00112222111110010000 0000 1122222223356899999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|.+++|.+....+...+..++. .+.++|++||+|..+.
T Consensus 499 ------PNsNLD~~GE~AL~~Ai~~~k~----rG~~vvviaHRPs~L~ 536 (580)
T COG4618 499 ------PNSNLDSEGEAALAAAILAAKA----RGGTVVVIAHRPSALA 536 (580)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHH----cCCEEEEEecCHHHHh
Confidence 9999999999999999988875 5779999999998764
No 437
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.42 E-value=2.1e-13 Score=157.77 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=104.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch---hhH----HHHHh-------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS---KED----MAILM------------- 252 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~---~~~----~~~~~------------- 252 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.++.|++........ ..+ ++...
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 4889999999999 8899999999999999999999998888754321100 000 00000
Q ss_pred --hhhhhhcccccccccccCCCcc------chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 253 --GNQLKRRSTHHLEKTYFPFYSS------AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 253 --~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
.+.....+...++..++..... +....+|||++|++ ++++|+..+|+|+++|| |++++|+
T Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl--alaRall~~~~ililDE----------~ts~LD~ 503 (555)
T TIGR01194 436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL--ALICAWLEDRPILLFDE----------WAADQDP 503 (555)
T ss_pred cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC----------CccCCCH
Confidence 0011222333444444432211 22367999999999 99999999999999999 9999999
Q ss_pred HHHHHHHHHH-HhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 325 EIQRTLMELL-NQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 325 ~~~~~l~~lL-~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+..+.+.+.+ ..+.. .+.++|++||+++.+.
T Consensus 504 ~~~~~i~~~l~~~~~~----~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 504 AFKRFFYEELLPDLKR----QGKTIIIISHDDQYFE 535 (555)
T ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHH
Confidence 9998887644 33321 2458999999986543
No 438
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.42 E-value=1.4e-13 Score=163.56 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=106.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++|+||+|+|||||+++|+|.+.+..|++...... +..+
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIre 573 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHH
Confidence 46899999999999 88999999999999999999999988877543210 0011
Q ss_pred HHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+..++.+..+++..++ .....+--..+|||++|++ ++++|+..+|+||++||
T Consensus 574 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl--alARALl~~p~ILILDE-------- 643 (711)
T TIGR00958 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI--AIARALVRKPRVLILDE-------- 643 (711)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEEc--------
Confidence 11111011111122222222221 1112223356999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
|++++|.+..+.+.+ ... ..+.++|++||+++.+. ..|+++.+
T Consensus 644 --pTSaLD~~te~~i~~-~~~------~~~~TvIiItHrl~~i~-------~aD~IivL 686 (711)
T TIGR00958 644 --ATSALDAECEQLLQE-SRS------RASRTVLLIAHRLSTVE-------RADQILVL 686 (711)
T ss_pred --cccccCHHHHHHHHH-hhc------cCCCeEEEEeccHHHHH-------hCCEEEEE
Confidence 999999998887777 221 13469999999987654 45655554
No 439
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.42 E-value=2.1e-13 Score=160.06 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=115.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------------- 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------------- 242 (741)
+.++++++|++.+| ++|+||||||||||+++|+|.+.++.+++......
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 35899999999999 78999999999999999999998876655332110
Q ss_pred -chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 243 -TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 -~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
...+++.... + .+...++...++.+++.......+..+|||+.+++ .+++|+..+|++|++||
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv--~LAraL~~~P~lLllDE-------- 170 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRV--SIARALMNGGQVILADE-------- 170 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEEC--------
Confidence 0111121110 0 11223445566667776666778899999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..++.+.+++.++.. .+.++|++||+++.++
T Consensus 171 --P~~gLD~~s~~~l~~ll~~l~~----~g~tilivsH~~~~~~ 208 (648)
T PRK10535 171 --PTGALDSHSGEEVMAILHQLRD----RGHTVIIVTHDPQVAA 208 (648)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHh----cCCEEEEECCCHHHHH
Confidence 9999999999999999998753 3568999999998664
No 440
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=141.95 Aligned_cols=150 Identities=16% Similarity=0.253 Sum_probs=118.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------------cchh
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------------VTSK 245 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------------~~~~ 245 (741)
...++++++..+| +.|+|.+|||||||.++|.+.+... +.+....- +...
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 4567889999998 8899999999999999999988665 44432100 0111
Q ss_pred hHHHHHh------------hhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 246 EDMAILM------------GNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 246 ~~~~~~~------------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
..+..+. ..+...++.++++.+|+... .+.++.++|||++|++ ++++|+..+|.+++|||
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRI--AIARAliLkP~~i~LDE----- 452 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRI--AIARALILKPELILLDE----- 452 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHH--HHHHHHhcCCcEEEecC-----
Confidence 1222221 12345677888888887654 6788999999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
||+.+|...+..+.++|..+.. ..+..-+++|||...+..
T Consensus 453 -----PTSALD~SVQaQvv~LLr~LQ~---k~~LsYLFISHDL~VvrA 492 (534)
T COG4172 453 -----PTSALDRSVQAQVLDLLRDLQQ---KHGLSYLFISHDLAVVRA 492 (534)
T ss_pred -----CchHhhHHHHHHHHHHHHHHHH---HhCCeEEEEeccHHHHHH
Confidence 9999999999999999999886 568899999999876543
No 441
>KOG0055|consensus
Probab=99.42 E-value=1.9e-13 Score=161.77 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=107.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
-.+++++++.+|.| +.|+||+||||||++..|++.+.|+.++|....... ..+
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~e 445 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRE 445 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHH
Confidence 37999999999999 889999999999999999999999998886542210 111
Q ss_pred HHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.+...+.....+..+.+.. ++.....+---++|||++||+ ++++|+..+|.||+|||
T Consensus 446 NI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI--AIARalv~~P~ILLLDE-------- 515 (1228)
T KOG0055|consen 446 NIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI--AIARALVRNPKILLLDE-------- 515 (1228)
T ss_pred HHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH--HHHHHHHhCCCEEEecC--------
Confidence 222211111111111111111 111111222234899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+|+.+|++..+.+.+.|+.... +.+.|+++|+...+..
T Consensus 516 --aTSaLD~~se~~Vq~ALd~~~~-----grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 516 --ATSALDAESERVVQEALDKASK-----GRTTIVVAHRLSTIRN 553 (1228)
T ss_pred --cccccCHHHHHHHHHHHHHhhc-----CCeEEEEeeehhhhhc
Confidence 9999999999999999977653 3488889999987754
No 442
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=3.8e-13 Score=129.78 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=110.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------------cc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------------VT 243 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------------~~ 243 (741)
+.++.+++++++.| +.++|-||+|||||+++|||.+.++.+.|..... .+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 45788899999999 7799999999999999999999999888864311 01
Q ss_pred hhhHHHH--Hhhh----------hhhhcccccccc--cccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 244 SKEDMAI--LMGN----------QLKRRSTHHLEK--TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 244 ~~~~~~~--~~~~----------~~~~~~~~~l~~--~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
..++++. ..|. .........+.. .+++...+..++.+|||++|.+ .+..|-.+.|.||||||
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal--sL~MAtl~~pkiLLLDE-- 174 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL--SLLMATLHPPKILLLDE-- 174 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH--HHHHHhcCCCcEEEecc--
Confidence 1112111 1110 011111112222 3566677888999999999999 88899999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
.|+.+||.....++++-.++-. ..+++.+++||+++.
T Consensus 175 --------HTAALDPkta~~vm~lT~kiV~---~~klTtlMVTHnm~~ 211 (263)
T COG1101 175 --------HTAALDPKTAEFVMELTAKIVE---EHKLTTLMVTHNMED 211 (263)
T ss_pred --------hhhcCCcchHHHHHHHHHHHHH---hcCCceEEEeccHHH
Confidence 9999999999988888776654 578899999998763
No 443
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.40 E-value=3.1e-12 Score=126.41 Aligned_cols=143 Identities=28% Similarity=0.396 Sum_probs=90.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 603 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~ 603 (741)
..+++||||||+||||||..||++++.++...+++.+-.. ..+..++.... ...|||||||..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~------~dl~~il~~l~--~~~ILFIDEIHRln------- 114 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA------GDLAAILTNLK--EGDILFIDEIHRLN------- 114 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC------HHHHHHHHT----TT-EEEECTCCC---------
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH------HHHHHHHHhcC--CCcEEEEechhhcc-------
Confidence 3579999999999999999999999999988887654221 22334444333 34799999999862
Q ss_pred CcccHHHHHHHHHHHHHcc-----CCCCC--------CCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHH
Q psy11254 604 TSADREIQRTLMELLNQMD-----GFDSL--------GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEIL 670 (741)
Q Consensus 604 ~~~~~~~~~~l~~lL~~~~-----g~~~~--------~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~ 670 (741)
...+..+...++... |.... ...-+|+||++...+.+.+.- ||-.+.++..++.++..+|+
T Consensus 115 ----k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv 188 (233)
T PF05496_consen 115 ----KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIV 188 (233)
T ss_dssp ----HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHH
T ss_pred ----HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHH
Confidence 334555555555221 11111 245599999999999999976 99999999999999999999
Q ss_pred HHhhcCccccCCCCccccc
Q psy11254 671 KIHAGPIAKHGEIGDAATK 689 (741)
Q Consensus 671 ~~~~~~~~~~~~~~~~a~~ 689 (741)
+.....+. .++++....
T Consensus 189 ~r~a~~l~--i~i~~~~~~ 205 (233)
T PF05496_consen 189 KRSARILN--IEIDEDAAE 205 (233)
T ss_dssp HHCCHCTT---EE-HHHHH
T ss_pred HHHHHHhC--CCcCHHHHH
Confidence 97766543 344444433
No 444
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.40 E-value=1.6e-12 Score=155.43 Aligned_cols=156 Identities=26% Similarity=0.379 Sum_probs=116.1
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhC----------ccEEEEechhhh--ccccchHHHHHHHHHHHHHh-cCCeEE
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKVVSSAIV--DKYIGESARLIREMFNYARN-HQPCII 587 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~----------~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~-~~p~Vl 587 (741)
.....+++|+||||||||++++.+|..+. ..++.++.+.+. .+|.|+.+..++.+|+.+.. ..++||
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~IL 284 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIIL 284 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 34455789999999999999999998762 447777777776 36899999999999999864 468999
Q ss_pred EEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCC
Q psy11254 588 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 588 ~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~ 662 (741)
||||++.+.+.+++.+ ..+ ...++...| ..+.+.+|+||+..+ .+|+||.| ||. .|.++.|+
T Consensus 285 fIDEih~l~~~g~~~~-~~d--~~n~Lkp~l-------~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps 351 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAG-QGD--AANLLKPAL-------ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPD 351 (852)
T ss_pred EEeChHHhccCCCccc-ccc--HHHHhhHHh-------hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCC
Confidence 9999999987764322 122 222333322 245788999998643 48999999 996 79999999
Q ss_pred HHHHHHHHHHhhcCcccc--CCCCccccc
Q psy11254 663 EQARLEILKIHAGPIAKH--GEIGDAATK 689 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~~--~~~~~~a~~ 689 (741)
.+++..||+.....+..+ ..+++.++.
T Consensus 352 ~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 352 EETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred HHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 999999987666544332 345555543
No 445
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.39 E-value=6.5e-13 Score=155.23 Aligned_cols=148 Identities=18% Similarity=0.249 Sum_probs=111.0
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC---ceeeecccc-----------------------cch
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN---FLKVVSSLF-----------------------VTS 244 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~---~~~v~~~~~-----------------------~~~ 244 (741)
.+.+++++++.+++| ++|.||||+|||||+++|+|...+. .|++..... .+.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 456899999999999 7899999999999999999987653 344432211 111
Q ss_pred hhHHHHHhh---------hhhhhcccccccccccCCCccchhh------hhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 245 KEDMAILMG---------NQLKRRSTHHLEKTYFPFYSSAIVD------KYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 245 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~------~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
.+++.+... .+...++...++.+++....+..++ .+|||+++++ .+++++..+|+|+|+||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv--sia~aL~~~p~vlllDE-- 192 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL--AFASELLTDPPLLFCDE-- 192 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH--HHHHHHHcCCCEEEeeC--
Confidence 122221110 1222345666777776654445544 5999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
|++++|......+.+.+..+.. .+.++|+++|++.
T Consensus 193 --------PtsgLD~~~~~~l~~~L~~l~~----~g~tvi~~~hq~~ 227 (617)
T TIGR00955 193 --------PTSGLDSFMAYSVVQVLKGLAQ----KGKTIICTIHQPS 227 (617)
T ss_pred --------CCcchhHHHHHHHHHHHHHHHh----CCCEEEEEeCCCC
Confidence 9999999999999999998864 3678999999985
No 446
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.39 E-value=3.7e-13 Score=156.50 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=107.2
Q ss_pred hccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 188 ELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 188 ~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
.+.+. ++.+++++++.+++| ++++||+||||||+++.|++.+.+..|++......
T Consensus 335 sf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 335 SFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 34444 567999999999999 88999999999999999999999987777642110
Q ss_pred ---chhhHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccc
Q psy11254 243 ---TSKEDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308 (741)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEi 308 (741)
+..+++.....+..++.+.++++.. |+...-.+--..+|||++|++ ++++|+..+|+||+|||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl--aiARall~~~~ILILDE- 491 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL--AIARALLRNPPILILDE- 491 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH--HHHHHHhcCCCEEEEec-
Confidence 0011222111110111122222211 122111223347899999999 99999999999999999
Q ss_pred cccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 309 d~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+|+++|.++...+.+.+..+.. + .++|+++|++..+.
T Consensus 492 ---------aTSalD~~tE~~I~~~l~~l~~----~-rT~iiIaHRlsti~ 528 (567)
T COG1132 492 ---------ATSALDTETEALIQDALKKLLK----G-RTTLIIAHRLSTIK 528 (567)
T ss_pred ---------cccccCHHhHHHHHHHHHHHhc----C-CEEEEEeccHhHHH
Confidence 9999999999999888875543 2 37777999998765
No 447
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.38 E-value=2.1e-12 Score=141.87 Aligned_cols=144 Identities=29% Similarity=0.448 Sum_probs=100.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh-ccccchHHHH-HHHHHHHH----HhcCCeEEEEcccccccC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV-DKYIGESARL-IREMFNYA----RNHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~-~~~~g~s~~~-i~~~f~~a----~~~~p~Vl~iDE~d~~~~ 597 (741)
..+++|+||||||||++|+++|..++.+|+.++++.+. ..|+|+.... +..+++.+ ....++||||||+|.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 46799999999999999999999999999999998875 4688876443 45554432 234678999999999987
Q ss_pred CCCCCCCccc---HHHHHHHHHHHHHccCC-----------CCCCCeEEEEeeCCCC-----------------------
Q psy11254 598 RRFSEGTSAD---REIQRTLMELLNQMDGF-----------DSLGQVKMIMATNRPD----------------------- 640 (741)
Q Consensus 598 ~r~~~~~~~~---~~~~~~l~~lL~~~~g~-----------~~~~~v~vi~tTn~~~----------------------- 640 (741)
++.+.+...+ ..++..|.++| +|. ......++|.|||-..
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~L---eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~g 264 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKIL---EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIG 264 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHH---hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccC
Confidence 6433222111 23455555555 432 1112456777776410
Q ss_pred -----------------------------CCCccccCCCCcceEEEcCCCCHHHHHHHHHH
Q psy11254 641 -----------------------------TLDPALLRPGRLDRKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 641 -----------------------------~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~ 672 (741)
-+.|+|+ ||+|.++.|.+++.++..+|+..
T Consensus 265 f~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 265 FGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred CccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecCCCCHHHHHHHHHH
Confidence 0234444 59999999999999999999973
No 448
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.38 E-value=8.5e-12 Score=123.32 Aligned_cols=154 Identities=24% Similarity=0.353 Sum_probs=93.8
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+++++.|.++++..++-.+....... .....++|+||||+||||||++||++++.++...++.....
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----
Confidence 479999999999999877665322111 11234899999999999999999999999887766521110
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
.+. +...+.. ....+||||||||.+ ...++
T Consensus 89 ---------------------------------~~d----l~~il~~--l~~~~ILFIDEIHRl-----------nk~~q 118 (233)
T PF05496_consen 89 ---------------------------------AGD----LAAILTN--LKEGDILFIDEIHRL-----------NKAQQ 118 (233)
T ss_dssp ---------------------------------CHH----HHHHHHT----TT-EEEECTCCC-------------HHHH
T ss_pred ---------------------------------HHH----HHHHHHh--cCCCcEEEEechhhc-----------cHHHH
Confidence 011 1112221 235679999999876 34566
Q ss_pred HHHHHHHHhcc-----CCC--------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 328 RTLMELLNQMD-----GFD--------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 328 ~~l~~lL~~l~-----~~~--------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
..|...+.... +.. .....++|.||.+...+.+.++. ||.-...+..++.++-..|
T Consensus 119 e~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~I 187 (233)
T PF05496_consen 119 EILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKI 187 (233)
T ss_dssp HHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHH
T ss_pred HHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHH
Confidence 77777765321 111 01357899999999999999988 8877777888888777666
No 449
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.38 E-value=9.5e-12 Score=133.27 Aligned_cols=213 Identities=18% Similarity=0.231 Sum_probs=131.1
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHH
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~ 248 (741)
+|+++.|.++++++|...+......+ ..+.+++|+||||||||+|++++|..++.++..+.+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------ 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------
Confidence 58899999999999999885322211 2234589999999999999999999987665333221000
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
..+. +...+.. ...+.+|||||++.+.. ....
T Consensus 68 -------------------------------~~~~----l~~~l~~--~~~~~vl~iDEi~~l~~-----------~~~e 99 (305)
T TIGR00635 68 -------------------------------KPGD----LAAILTN--LEEGDVLFIDEIHRLSP-----------AVEE 99 (305)
T ss_pred -------------------------------Cchh----HHHHHHh--cccCCEEEEehHhhhCH-----------HHHH
Confidence 0011 1111211 24578999999988732 2233
Q ss_pred HHHHHHHhccCC-------------CCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCC
Q psy11254 329 TLMELLNQMDGF-------------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGP 395 (741)
Q Consensus 329 ~l~~lL~~l~~~-------------~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~ 395 (741)
.+..++...... .......+|++|+++..+++++.. ||...+.+..|+..+..++ +......
T Consensus 100 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~i---l~~~~~~ 174 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEI---VSRSAGL 174 (305)
T ss_pred HhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHH---HHHHHHH
Confidence 344444322200 011347888999999999988877 8888889999998888777 3322221
Q ss_pred Cccc-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHH
Q psy11254 396 IAKH-GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449 (741)
Q Consensus 396 ~~~~-~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 449 (741)
.... .+.....+++.+.|+. +.+..++..+...+.......++.+....++..
T Consensus 175 ~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 175 LNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 1111 1112456777777765 555677776654444334455676666666554
No 450
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=2.8e-12 Score=140.06 Aligned_cols=145 Identities=28% Similarity=0.465 Sum_probs=102.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh-ccccchH-HHHHHHHHHHH----HhcCCeEEEEcccccccC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV-DKYIGES-ARLIREMFNYA----RNHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~-~~~~g~s-~~~i~~~f~~a----~~~~p~Vl~iDE~d~~~~ 597 (741)
..+++|+||||||||++|+++|..++.+|..++.+.+. ..|+|+. +..+..+++.+ ....++||||||+|.+..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 35799999999999999999999999999988888765 3588875 34445554432 224578999999999987
Q ss_pred CCCCCCCccc---HHHHHHHHHHHHHccCCC-----------CCCCeEEEEeeCCC------------------------
Q psy11254 598 RRFSEGTSAD---REIQRTLMELLNQMDGFD-----------SLGQVKMIMATNRP------------------------ 639 (741)
Q Consensus 598 ~r~~~~~~~~---~~~~~~l~~lL~~~~g~~-----------~~~~v~vi~tTn~~------------------------ 639 (741)
++.+.+...+ ..++..++++| +|.. +..+.++|+|||-.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iL---eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~g 272 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKII---EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIG 272 (413)
T ss_pred hhccccccccccchhHHHHHHHHh---hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccc
Confidence 6533322111 23455555555 4431 12357788898861
Q ss_pred ---C-----------------------CCCccccCCCCcceEEEcCCCCHHHHHHHHHHh
Q psy11254 640 ---D-----------------------TLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673 (741)
Q Consensus 640 ---~-----------------------~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~ 673 (741)
+ -+.|+|+ ||+|.++.|.+++.++..+|+...
T Consensus 273 f~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 273 FGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHH
Confidence 0 0224554 599999999999999999999864
No 451
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.37 E-value=8.1e-12 Score=135.00 Aligned_cols=184 Identities=21% Similarity=0.236 Sum_probs=122.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 602 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~ 602 (741)
++.+++|+||||||||++|+++|++++..+...+++.+.. ...+..++... ..++||||||++.+..
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~----- 116 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSP----- 116 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc--ccCCEEEEecHhhcch-----
Confidence 3567999999999999999999999998877666553311 22334444433 3468999999998731
Q ss_pred CCcccHHHHHHHHHHHHHcc-------CCC------CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 603 GTSADREIQRTLMELLNQMD-------GFD------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 603 ~~~~~~~~~~~l~~lL~~~~-------g~~------~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
...+.+..+++... +.. ....+.+|++||++..+++++.+ ||...+.|++|+.+++.+|
T Consensus 117 ------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~i 188 (328)
T PRK00080 117 ------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKI 188 (328)
T ss_pred ------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHH
Confidence 12233444444321 000 11246789999999999999877 9999999999999999999
Q ss_pred HHHhhcCccccCCCCccccccccccccc-chHHHHHHHhhhhhhhc-CCCcccHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAG-GFIYIATVSVIPELLED-TSPKQTVKEILALLL 729 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~-gf~~~a~~~~~~~l~~~-~~~~~s~~~i~~~l~ 729 (741)
++...+.. +..+++.+...+.....+ -+........+...... .....+...+..++.
T Consensus 189 l~~~~~~~--~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 189 VKRSARIL--GVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHHHHHc--CCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99888753 345666666665544333 24455555554444322 234566666666554
No 452
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.37 E-value=5.6e-12 Score=132.57 Aligned_cols=175 Identities=25% Similarity=0.360 Sum_probs=118.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC----CeEEEEcccccccCCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ----PCIIFMDEIDAIGGRR 599 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~----p~Vl~iDE~d~~~~~r 599 (741)
-.+++|||||||||||+|++||+..+.+|..++... .+.+.++.+|+.|+... ..|||+||+..|-...
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q 120 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ 120 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh
Confidence 346899999999999999999999999999887652 23467899999996543 4799999999873221
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEee--CCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT--NRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tT--n~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
+.. ||-.|+ .+.+++|+|| |-.-.+.+|+++ |- +++++.+.+.++...+++.-+...
T Consensus 121 -----------QD~---lLp~vE----~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 121 -----------QDA---LLPHVE----NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred -----------hhh---hhhhhc----CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhh
Confidence 222 444443 2357777755 555688999987 43 568899999999999998844322
Q ss_pred ccc-----CCCCcccccccccc-cccchHHHHHHHhhhhhhhcCCCcccHHHHHHH
Q psy11254 678 AKH-----GEIGDAATKWVLPF-TAGGFIYIATVSVIPELLEDTSPKQTVKEILAL 727 (741)
Q Consensus 678 ~~~-----~~~~~~a~~~l~~~-~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~ 727 (741)
... ..+++.+...+... ..+++...+.++.+-.+..... .+..+.+...
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~-~~~~~~l~~~ 234 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE-VLILELLEEI 234 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc-ccCHHHHHHH
Confidence 211 22556565554433 3455666666666665555444 3334444443
No 453
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36 E-value=7.1e-12 Score=150.64 Aligned_cols=145 Identities=26% Similarity=0.394 Sum_probs=115.0
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHhC----------ccEEEEechhhh--ccccchHHHHHHHHHHHHHhcCCe
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKVVSSAIV--DKYIGESARLIREMFNYARNHQPC 585 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~----------~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~~p~ 585 (741)
-++.+...+++|+||||||||++++.+|..+. ..++.++.+.++ .+|.|+.+.+++.+|+.+....++
T Consensus 194 ~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ 273 (821)
T CHL00095 194 ILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNI 273 (821)
T ss_pred HHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCe
Confidence 34555667899999999999999999998873 578899998887 578999999999999999888889
Q ss_pred EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCC
Q psy11254 586 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 586 Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~ 660 (741)
||||||++.+.+.+.+.+. ......+...|. .+.+.+|++|+..+ ..|+++.| ||.. |.++.
T Consensus 274 ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~-------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~e 340 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGA---IDAANILKPALA-------RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGE 340 (821)
T ss_pred EEEEecHHHHhcCCCCCCc---ccHHHHhHHHHh-------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCC
Confidence 9999999999876643322 123334433332 45688999998764 47899999 9975 79999
Q ss_pred CCHHHHHHHHHHhhc
Q psy11254 661 PNEQARLEILKIHAG 675 (741)
Q Consensus 661 p~~~~r~~i~~~~~~ 675 (741)
|+.++...|++....
T Consensus 341 p~~~e~~aILr~l~~ 355 (821)
T CHL00095 341 PSVEETIEILFGLRS 355 (821)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986543
No 454
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.35 E-value=1.4e-12 Score=122.33 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=113.0
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------chhhHH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------TSKEDM 248 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------~~~~~~ 248 (741)
+..+.++|+..+| +.++|.||+|||||+|+|||.+.|+.+++...... ....++
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 4566788999998 78999999999999999999999998887643211 111122
Q ss_pred HHHhh-----------hhhhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 249 AILMG-----------NQLKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 249 ~~~~~-----------~~~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+.+.. ....+++...+..+|+.. ...-.+..++-+++++| ++++|+..+|.||+.||
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV--aLARALIL~P~iIIaDe--------- 175 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV--ALARALILRPKIIIADE--------- 175 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH--HHHHHHhcCCcEEEehh---------
Confidence 22211 122345666677777543 34455677888889988 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.-+++|...+..+..+.-++.. .-++..|.++.+...+.
T Consensus 176 -Al~~LD~smrsQl~NL~LeLQe---k~GiSyiYV~QhlG~iK 214 (267)
T COG4167 176 -ALASLDMSMRSQLINLMLELQE---KQGISYIYVTQHIGMIK 214 (267)
T ss_pred -hhhhccHHHHHHHHHHHHHHHH---HhCceEEEEechhhHhh
Confidence 6789999999999998888765 56889999998877653
No 455
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.35 E-value=2.5e-12 Score=152.16 Aligned_cols=141 Identities=25% Similarity=0.394 Sum_probs=104.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh---------ccccchHHHHHHHHHHHHHhcCCeEEEEcccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV---------DKYIGESARLIREMFNYARNHQPCIIFMDEID 593 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~---------~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d 593 (741)
.+..++|+||||||||++++.+|+.++.+++.++.+... ..|+|.....+...+..+...+| |+||||+|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEid 426 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEID 426 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChh
Confidence 345699999999999999999999999999888765432 24666665556666666554454 89999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHc------cC----CCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQM------DG----FDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~------~g----~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
.+.... ..+ ....+.++|+.= |. .-..+++++|+|+|.. .|+|||+. |++ +|.|+.++.
T Consensus 427 k~~~~~-----~g~--~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~ 495 (784)
T PRK10787 427 KMSSDM-----RGD--PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTE 495 (784)
T ss_pred hccccc-----CCC--HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCH
Confidence 986432 112 234555555421 11 1133689999999988 49999998 995 799999999
Q ss_pred HHHHHHHHHhhc
Q psy11254 664 QARLEILKIHAG 675 (741)
Q Consensus 664 ~~r~~i~~~~~~ 675 (741)
++..+|.+.|+.
T Consensus 496 eek~~Ia~~~L~ 507 (784)
T PRK10787 496 DEKLNIAKRHLL 507 (784)
T ss_pred HHHHHHHHHhhh
Confidence 999999999985
No 456
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.35 E-value=4.5e-13 Score=168.77 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=65.1
Q ss_pred hhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 277 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 277 ~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
-..+|||++||+ ++++|+..+|.||+||| ||+++|.++.+.+.+.+..+.. ..+.++|++||++.
T Consensus 1356 G~~LSGGQkQRI--aIARALlr~p~ILLLDE----------aTSaLD~~sE~~I~~~L~~~~~---~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1356 GKSLSGGQKQRI--AIARALLREPKILLLDE----------ATSSLDSNSEKLIEKTIVDIKD---KADKTIITIAHRIA 1420 (1466)
T ss_pred CCcCCHHHHHHH--HHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHHHHhc---cCCCEEEEEechHH
Confidence 356899999999 99999999999999999 9999999999999888877631 13469999999997
Q ss_pred CCCccccCCCccceeeecCCC
Q psy11254 357 TLDPALLRPGRLDRKIEIPLP 377 (741)
Q Consensus 357 ~ld~al~r~gr~d~~i~~~~p 377 (741)
.+. ..|+++.+..+
T Consensus 1421 ti~-------~aD~Ivvl~~~ 1434 (1466)
T PTZ00265 1421 SIK-------RSDKIVVFNNP 1434 (1466)
T ss_pred HHH-------hCCEEEEEeCC
Confidence 664 56777766543
No 457
>KOG2004|consensus
Probab=99.35 E-value=8.2e-12 Score=138.57 Aligned_cols=194 Identities=26% Similarity=0.394 Sum_probs=141.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh---------ccccchHHHHHHHHHHHHHhcCCeEEEEcccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV---------DKYIGESARLIREMFNYARNHQPCIIFMDEID 593 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~---------~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d 593 (741)
.+.-+||+||||.|||++++.||..++..|+.++-+.+. ..|+|....++-+-++.....+| +++|||+|
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvD 515 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVD 515 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhh
Confidence 455589999999999999999999999999999866443 34899888888888888888887 67799999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHH----------HccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLN----------QMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~----------~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
.++ + +..+|+ ...+.++|+ +++=.-...+|++|+|.|..+.|+++|+- |+. +|+++-+..
T Consensus 516 KlG--~---g~qGDP--asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~ 585 (906)
T KOG2004|consen 516 KLG--S---GHQGDP--ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVA 585 (906)
T ss_pred hhC--C---CCCCCh--HHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccH
Confidence 987 2 222333 345666654 22212234589999999999999999986 885 589999999
Q ss_pred HHHHHHHHHhhcCccc-cCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHHH
Q psy11254 664 QARLEILKIHAGPIAK-HGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVFMMVI 736 (741)
Q Consensus 664 ~~r~~i~~~~~~~~~~-~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~~~~~ 736 (741)
++..+|-+.||-+-.. +..+++.-+.. ..-++...+.....+...+.-.+||.+++--++++++
T Consensus 586 eEKv~IA~~yLip~a~~~~gl~~e~v~i---------s~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 586 EEKVKIAERYLIPQALKDCGLKPEQVKI---------SDDALLALIERYCREAGVRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred HHHHHHHHHhhhhHHHHHcCCCHHhcCc---------cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864321 12233222221 2234445555566666667777888888887777765
No 458
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.35 E-value=2.3e-11 Score=131.52 Aligned_cols=214 Identities=19% Similarity=0.189 Sum_probs=133.0
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+|+++.|.++.++.+...+...... -..+.+++|+||||||||++++++|..++..+..+.+....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 47999999999999998887532111 12345689999999999999999999998765444321100
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
..+ .+...+.. ...++||||||+|.+.. ...
T Consensus 89 --------------------------------~~~----~l~~~l~~--l~~~~vl~IDEi~~l~~-----------~~~ 119 (328)
T PRK00080 89 --------------------------------KPG----DLAAILTN--LEEGDVLFIDEIHRLSP-----------VVE 119 (328)
T ss_pred --------------------------------ChH----HHHHHHHh--cccCCEEEEecHhhcch-----------HHH
Confidence 000 11112221 24578999999998732 122
Q ss_pred HHHHHHHHhcc------C-CC------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC
Q psy11254 328 RTLMELLNQMD------G-FD------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 328 ~~l~~lL~~l~------~-~~------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
..+..++.... . .. ......+|++|+++..+++++.+ ||...+.++.|+..+..++ +.....
T Consensus 120 e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~i---l~~~~~ 194 (328)
T PRK00080 120 EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKI---VKRSAR 194 (328)
T ss_pred HHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHH---HHHHHH
Confidence 33334433211 0 00 11346789999999999988876 8888899999999998877 433322
Q ss_pred CCccc-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHH
Q psy11254 395 PIAKH-GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449 (741)
Q Consensus 395 ~~~~~-~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 449 (741)
..... .+.....++..+.|.. +.+..++..+...+.......++.+....++..
T Consensus 195 ~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 195 ILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 22111 1112467777777765 556666665544444333445666666666644
No 459
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.3e-13 Score=129.58 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=104.9
Q ss_pred cCCC-hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC--Cceeeeccc------------------------
Q psy11254 190 PLLN-PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSL------------------------ 240 (741)
Q Consensus 190 ~~~~-~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~------------------------ 240 (741)
.... ++++++++++++.| ..|.||||+|||||+++|+|.-+. +.+++....
T Consensus 12 ~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ 91 (251)
T COG0396 12 EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV 91 (251)
T ss_pred EecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc
Confidence 3445 48999999999999 679999999999999999986432 222222110
Q ss_pred ccchhhHHHHHh-------h-----hhhhhcccccccccccCC-Cccc-hhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 241 FVTSKEDMAILM-------G-----NQLKRRSTHHLEKTYFPF-YSSA-IVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 241 ~~~~~~~~~~~~-------~-----~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
-+.+.....++. + ......+...++.+++.. ...+ .-..+|||.++|. -+.++...+|++.+||
T Consensus 92 ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~--EilQ~~~lePkl~ILD 169 (251)
T COG0396 92 EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN--EILQLLLLEPKLAILD 169 (251)
T ss_pred cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH--HHHHHHhcCCCEEEec
Confidence 001111111111 0 022233344445555543 2222 2346789998877 7888888999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
| |.+++|....+.+.+-++.+.+ .+..++++||....++
T Consensus 170 E----------~DSGLDIdalk~V~~~i~~lr~----~~~~~liITHy~rll~ 208 (251)
T COG0396 170 E----------PDSGLDIDALKIVAEGINALRE----EGRGVLIITHYQRLLD 208 (251)
T ss_pred C----------CCcCccHHHHHHHHHHHHHHhc----CCCeEEEEecHHHHHh
Confidence 9 7889999999999999999886 4678999999877655
No 460
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.35 E-value=1.2e-12 Score=164.84 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=111.0
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC---CCceeeeccccc----------------------chh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSLFV----------------------TSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~~~~~----------------------~~~ 245 (741)
.+.+++++++.+++| ++|+||||+|||||+++|+|... +..|++...... +..
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 456899999999999 78999999999999999999886 344555432110 111
Q ss_pred hHHHHHh---------hhhhhhcccccccccccCCCccchhh----hhcchHHHHHHHHHHHHHhcCCe-EEEecccccc
Q psy11254 246 EDMAILM---------GNQLKRRSTHHLEKTYFPFYSSAIVD----KYIGESARLIREMFNYARNHQPC-IIFMDEIDAI 311 (741)
Q Consensus 246 ~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~G~~~~~v~~~~~~A~~~~P~-ILllDEid~l 311 (741)
+.+.... ..+...++.+.++.+++....+..++ .+|||+++++ .+++++..+|+ ||||||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl--~Ia~aL~~~P~~iLlLDE---- 928 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL--TIGVELVAKPKLLLFLDE---- 928 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH--HHHHHHHcCCCeEEEEcC----
Confidence 1222110 00112334556666666655555555 6999999999 99999999996 999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|++++|......+.++|.++.. .+.+||+++|+++.
T Consensus 929 ------PTsgLD~~~~~~i~~~L~~la~----~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 929 ------PTSGLDSQTAWSICKLMRKLAD----HGQAILCTIHQPSA 964 (1394)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHH----cCCEEEEEecCCCH
Confidence 9999999999999999998853 35699999999974
No 461
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=2.4e-13 Score=129.15 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=124.4
Q ss_pred HhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc----------------------
Q psy11254 186 VIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------- 241 (741)
.+.+.|.....+++++|.+..| -+|+||||+||||++-+|.|...+..+++.....
T Consensus 10 ~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~ 89 (249)
T COG4674 10 GVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQK 89 (249)
T ss_pred ceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccC
Confidence 3556778888889999999999 5699999999999999999999998777754320
Q ss_pred ------cchhhHHHH-----------H---hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe
Q psy11254 242 ------VTSKEDMAI-----------L---MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC 301 (741)
Q Consensus 242 ------~~~~~~~~~-----------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ 301 (741)
.+..+++.. + ....-++|+.+.+...++..........+|.|++|.+ -+...+..+|.
T Consensus 90 PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL--EIGMll~Q~P~ 167 (249)
T COG4674 90 PTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL--EIGMLLAQDPK 167 (249)
T ss_pred CeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh--hhheeeccCCc
Confidence 011111111 0 0112345778888888888888888999999999988 88899999999
Q ss_pred EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 302 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 302 ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+|++|| |.++...+......++++.+.+ +..|+++.||+.++..
T Consensus 168 lLLlDE----------PvAGMTd~Et~~taeLl~~la~-----~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 168 LLLLDE----------PVAGMTDAETEKTAELLKSLAG-----KHSILVVEHDMGFVRE 211 (249)
T ss_pred EEEecC----------ccCCCcHHHHHHHHHHHHHHhc-----CceEEEEeccHHHHHH
Confidence 999999 9999988888888999999876 4579999999998753
No 462
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.34 E-value=1.4e-12 Score=164.42 Aligned_cols=150 Identities=17% Similarity=0.282 Sum_probs=105.8
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-c-cch--h----hHHHHHhhh------hhh-
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-F-VTS--K----EDMAILMGN------QLK- 257 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-~-~~~--~----~~~~~~~~~------~~~- 257 (741)
.++++++|.+++| ++|+||||||||||+++|+|.+.+..|.+.... . +.. . ..+++..++ ...
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 5899999999999 889999999999999999999999888876521 1 100 0 001111110 000
Q ss_pred --------------------------------------------------------------------hccccccccccc
Q psy11254 258 --------------------------------------------------------------------RRSTHHLEKTYF 269 (741)
Q Consensus 258 --------------------------------------------------------------------~~~~~~l~~~~~ 269 (741)
..+..+++..++
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 001111111111
Q ss_pred -------CC----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 270 -------PF----YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 270 -------~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
+. ...+....+|||++|++ ++++|+..+|.||+||| |++++|+.....+.+.+..+.
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi--aIARAll~~P~ILlLDE----------pTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRI--SIARAIIRNPKILILDE----------ATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHHHHh
Confidence 11 11234567999999999 99999999999999999 999999999999999998875
Q ss_pred CCCCCCCeEEEEeeCCCCCCC
Q psy11254 339 GFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld 359 (741)
. ..+.++|++||+++.+.
T Consensus 627 ~---~~g~TvIiIsHrls~i~ 644 (1466)
T PTZ00265 627 G---NENRITIIIAHRLSTIR 644 (1466)
T ss_pred h---cCCCEEEEEeCCHHHHH
Confidence 3 23568999999987653
No 463
>KOG0059|consensus
Probab=99.33 E-value=5.8e-13 Score=160.81 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=127.0
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch--------hhHHHH---------------
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS--------KEDMAI--------------- 250 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~--------~~~~~~--------------- 250 (741)
..+++++.+++| .+|.||||+||||+.+++.|...++.|++........ ...+++
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 678889999999 6699999999999999999999998877755322111 000111
Q ss_pred -------H---hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 251 -------L---MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 251 -------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+ ...+..+.+...++.+++.......++.||||.++++ .++.|+..+|++++||| |++
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkL--s~aialig~p~vi~LDE----------Pst 727 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRL--SFAIALIGDPSVILLDE----------PST 727 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhH--HHHHHHhcCCCEEEecC----------CCC
Confidence 1 1124445566777788888888888999999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCcc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRL 368 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~ 368 (741)
+.||..++.+.+++.++.. .++ .+|+|||.+++.+..|.|.+-+
T Consensus 728 GmDP~arr~lW~ii~~~~k---~g~-aiiLTSHsMeE~EaLCtR~aIm 771 (885)
T KOG0059|consen 728 GLDPKARRHLWDIIARLRK---NGK-AIILTSHSMEEAEALCTRTAIM 771 (885)
T ss_pred CCCHHHHHHHHHHHHHHHh---cCC-EEEEEcCCHHHHHHHhhhhhee
Confidence 9999999999999999875 344 8999999999999888887666
No 464
>KOG0066|consensus
Probab=99.33 E-value=2.1e-11 Score=128.09 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=103.2
Q ss_pred CChHHHhhhCCCCC--CCceEEcCCCChHHHHHHHHHHhcCCCceeeeccc--ccchh-----------hH-HHHHhh--
Q psy11254 192 LNPELFQRVGITPP--KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSL--FVTSK-----------ED-MAILMG-- 253 (741)
Q Consensus 192 ~~~~~~~~~~l~~~--~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~--~~~~~-----------~~-~~~~~~-- 253 (741)
+...+|..++|-+. .-++++||||+|||||++.+.|.+.|+-+...-.- .++.. .. ..++..
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F 677 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF 677 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc
Confidence 34567887766544 45999999999999999999999998766553210 01110 00 111110
Q ss_pred hhhhhcccccccccccCCCcc-chhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHH
Q psy11254 254 NQLKRRSTHHLEKTYFPFYSS-AIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332 (741)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~ 332 (741)
+--...+...+..+|+..... -.+..+|||+..+| +|+..-...|+||+||| |++++|.++...|.+
T Consensus 678 Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRV--alaeLal~~PDvlILDE----------PTNNLDIESIDALaE 745 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARV--ALAELALGGPDVLILDE----------PTNNLDIESIDALAE 745 (807)
T ss_pred CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHH--HHHHHhcCCCCEEEecC----------CCCCcchhhHHHHHH
Confidence 001122233444455543332 24678999999988 99988889999999999 999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 333 LLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 333 lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
.++++.+ .||++||+-..+
T Consensus 746 AIney~G-------gVi~VsHDeRLi 764 (807)
T KOG0066|consen 746 AINEYNG-------GVIMVSHDERLI 764 (807)
T ss_pred HHHhccC-------cEEEEeccccee
Confidence 9999987 689999987654
No 465
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=5.5e-12 Score=152.00 Aligned_cols=148 Identities=24% Similarity=0.373 Sum_probs=113.1
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhc-CCeE
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNH-QPCI 586 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~-~p~V 586 (741)
......+++|+||||+|||++++.+|..+ +.+++.++.+.++ .+|.|+.+..++.+|+.+... .|+|
T Consensus 190 ~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 190 SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeE
Confidence 34455678999999999999999999886 4567888878776 578899999999999988654 5899
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCC
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p 661 (741)
|||||++.+.+.+.+.+. ......+... -..+.+.+|++|+..+ .+|+|+.| ||.. |.++.|
T Consensus 270 LfIDEih~l~~~g~~~~~---~d~~~~Lk~~-------l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p 336 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGA---MDAGNMLKPA-------LARGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEP 336 (852)
T ss_pred EEeccHHHhhcCCCCcch---hHHHHHhchh-------hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCC
Confidence 999999999865533221 1222222222 2345788999998774 58999999 9975 789999
Q ss_pred CHHHHHHHHHHhhcCcccc
Q psy11254 662 NEQARLEILKIHAGPIAKH 680 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~ 680 (741)
+.+++..|++.....+..+
T Consensus 337 ~~~~~~~iL~~~~~~~e~~ 355 (852)
T TIGR03346 337 TVEDTISILRGLKERYEVH 355 (852)
T ss_pred CHHHHHHHHHHHHHHhccc
Confidence 9999999999876654433
No 466
>PLN03140 ABC transporter G family member; Provisional
Probab=99.33 E-value=1.9e-12 Score=162.56 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=108.1
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC--Cceeeecccc-----------------------cch
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLF-----------------------VTS 244 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~-----------------------~~~ 244 (741)
....+++++++.+.+| ++|.||||+|||||+++|||.... ..|++..... .+.
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 3456899999999999 779999999999999999998642 2233322110 011
Q ss_pred hhHHHHHh--h-------hhhhhcccccccccccCCCccchh-----hhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 245 KEDMAILM--G-------NQLKRRSTHHLEKTYFPFYSSAIV-----DKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 245 ~~~~~~~~--~-------~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
.+.+.... . .+...++...++.+++....+..+ ..+|||+++++ .|++++..+|+|||+||
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRv--sIa~aL~~~P~lL~LDE--- 1045 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL--TIAVELVANPSIIFMDE--- 1045 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHH--HHHHHHhhCCCEEEEeC---
Confidence 11121110 0 011123445566666655444444 57999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
|++++|......+.+++..+.. .+.+||+++|+++
T Consensus 1046 -------PTsgLD~~~a~~v~~~L~~l~~----~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1046 -------PTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1080 (1470)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCCC
Confidence 9999999999999999998864 3568999999997
No 467
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.2e-12 Score=121.52 Aligned_cols=147 Identities=15% Similarity=0.230 Sum_probs=110.2
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------c-ch--------hhHHHHHh-----
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------V-TS--------KEDMAILM----- 252 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------~-~~--------~~~~~~~~----- 252 (741)
+++.+++|++..| ++|.||+|+||||++|++-+.+.++.+.+...-. . .. ...+++..
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 5788899999999 7799999999999999999999998877743200 0 00 00111110
Q ss_pred --------------------hhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 253 --------------------GNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 253 --------------------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+....++..++..+.++.. ++-....+|||.+|++ -+++....+-.||+|||
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV--NIaRgfivd~pILLLDE---- 178 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV--NIARGFIVDYPILLLDE---- 178 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh--hhhhhhhccCceEEecC----
Confidence 12234445556666666543 4556789999999999 89999988878999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
||+++|...+..+.+++++-+. .+..+|.+-||.+.
T Consensus 179 ------PTasLDa~Nr~vVveli~e~Ka----~GaAlvGIFHDeev 214 (235)
T COG4778 179 ------PTASLDATNRAVVVELIREAKA----RGAALVGIFHDEEV 214 (235)
T ss_pred ------CcccccccchHHHHHHHHHHHh----cCceEEEeeccHHH
Confidence 9999999999999999988664 57789999997653
No 468
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.30 E-value=3.7e-11 Score=128.65 Aligned_cols=183 Identities=20% Similarity=0.236 Sum_probs=117.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 603 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~ 603 (741)
+.+++|+||||||||++|+++|.+++.++....++.+... ..+...+... ..+.||||||++.+..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~------~~l~~~l~~~--~~~~vl~iDEi~~l~~------ 95 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP------GDLAAILTNL--EEGDVLFIDEIHRLSP------ 95 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc------hhHHHHHHhc--ccCCEEEEehHhhhCH------
Confidence 4568999999999999999999999988766554432211 1122233222 3467999999998642
Q ss_pred CcccHHHHHHHHHHHHHccC-------C------CCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHH
Q psy11254 604 TSADREIQRTLMELLNQMDG-------F------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEIL 670 (741)
Q Consensus 604 ~~~~~~~~~~l~~lL~~~~g-------~------~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~ 670 (741)
...+.+..+++.... . .....+.+|++||++..+++++.+ ||..++.|++|+.+++.+|+
T Consensus 96 -----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il 168 (305)
T TIGR00635 96 -----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIV 168 (305)
T ss_pred -----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHH
Confidence 122334434332220 0 011247799999999999999887 99999999999999999999
Q ss_pred HHhhcCccccCCCCcccccccccccccchHH--HHHHHhhhhhhh-cCCCcccHHHHHHHHHH
Q psy11254 671 KIHAGPIAKHGEIGDAATKWVLPFTAGGFIY--IATVSVIPELLE-DTSPKQTVKEILALLLG 730 (741)
Q Consensus 671 ~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~--~a~~~~~~~l~~-~~~~~~s~~~i~~~l~g 730 (741)
+...+.. +..+++.+..++... ++|... ......+...+. ......+.+++..++..
T Consensus 169 ~~~~~~~--~~~~~~~al~~ia~~-~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 169 SRSAGLL--NVEIEPEAALEIARR-SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHh--CCCcCHHHHHHHHHH-hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9887743 345666666665554 333333 233333322322 23345677777766654
No 469
>PLN03232 ABC transporter C family member; Provisional
Probab=99.30 E-value=2.6e-12 Score=163.35 Aligned_cols=149 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh---h----HHHHHhh-----------
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK---E----DMAILMG----------- 253 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~---~----~~~~~~~----------- 253 (741)
+.+++++++++++| ++++||+|||||||+++|.+.+.+..|++......... . .++.+++
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 56999999999999 99999999999999999999999988887543211000 0 0000000
Q ss_pred ------hhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 254 ------NQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 254 ------~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
...+..+..+++..++ .....+--..+|||++|++ ++++|+..+|.||+|||
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl--aLARALLr~~~ILILDE--------- 1397 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL--SLARALLRRSKILVLDE--------- 1397 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH--HHHHHHHhCCCEEEEEC---------
Confidence 0001112222222221 1111223346899999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+|+++|.++.+.+.+.+.+.. .+.++|++||+++.+.
T Consensus 1398 -ATSaLD~~Te~~Iq~~L~~~~-----~~~TvI~IAHRl~ti~ 1434 (1495)
T PLN03232 1398 -ATASVDVRTDSLIQRTIREEF-----KSCTMLVIAHRLNTII 1434 (1495)
T ss_pred -CcccCCHHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHH
Confidence 999999999999998887653 2469999999998765
No 470
>KOG0055|consensus
Probab=99.30 E-value=7e-12 Score=148.76 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=111.3
Q ss_pred hhccC-CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc--------------------
Q psy11254 187 IELPL-LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------- 243 (741)
Q Consensus 187 i~~~~-~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------- 243 (741)
+.||- .+..+|++++++++.| +.|+||+||||||++-+|-+.++|+.+.+.......
T Consensus 995 F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred eeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 44552 2347999999999999 899999999999999999999999888776532111
Q ss_pred -----hhhHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 244 -----SKEDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 244 -----~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
-.+++.+-...-....+.++++.. |+.....+.-.++|||++||+ ++++|+..+|.||+|||
T Consensus 1075 LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI--AIARAilRnPkILLLDE 1152 (1228)
T KOG0055|consen 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI--AIARAILRNPKILLLDE 1152 (1228)
T ss_pred hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH--HHHHHHHcCCCeeeeec
Confidence 112222220010111111111111 122222344567899999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.|+.+|.++-+.+.+.|+.... +.++|+++|++..+.
T Consensus 1153 ----------ATSALDseSErvVQeALd~a~~-----gRT~IvIAHRLSTIq 1189 (1228)
T KOG0055|consen 1153 ----------ATSALDSESERVVQEALDRAME-----GRTTIVIAHRLSTIQ 1189 (1228)
T ss_pred ----------cchhhhhhhHHHHHHHHHHhhc-----CCcEEEEecchhhhh
Confidence 8999999999999999887653 568999999999875
No 471
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.29 E-value=4.9e-12 Score=126.98 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=59.6
Q ss_pred chhhhhcchHHHHH----HHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH-HHHHHHHhccCCCCCCCeEEE
Q psy11254 275 AIVDKYIGESARLI----REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR-TLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 275 ~~~~~~~G~~~~~v----~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~-~l~~lL~~l~~~~~~~~v~vI 349 (741)
..+..+|+|+.+++ +.++++|+..+|+++++|| |++++|+.... .+.+++.++.. ..+.++|
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE----------P~~~LD~~~~~~~l~~~l~~~~~---~~~~~ii 177 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE----------PTTNLDEENIEESLAEIIEERKS---QKNFQLI 177 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC----------CccccCHHHHHHHHHHHHHHHHh---ccCCEEE
Confidence 35678999999875 3478888899999999999 99999999999 99999988754 2256899
Q ss_pred EeeCCCCCCC
Q psy11254 350 MATNRPDTLD 359 (741)
Q Consensus 350 ~at~~~~~ld 359 (741)
++||+++.++
T Consensus 178 iitH~~~~~~ 187 (204)
T cd03240 178 VITHDEELVD 187 (204)
T ss_pred EEEecHHHHh
Confidence 9999987654
No 472
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.28 E-value=1.8e-12 Score=121.59 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=74.9
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHH-------------------Hhhhhh
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAI-------------------LMGNQL 256 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~-------------------~~~~~~ 256 (741)
+++++.+++| ++|+||||||||||+++|+|...+..+.+..........+... +..+..
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4677888888 7899999999999999999999888887754321111100000 001112
Q ss_pred hhcccccccccccCCCccchh----hhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 257 KRRSTHHLEKTYFPFYSSAIV----DKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~~----~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
..+....++.+++.......+ ..+|||+++++ .|++|+..+|.+|+|||
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl--~la~al~~~~~llllDE 134 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL--ALARALLKNPKLLLLDE 134 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH--HHHHHHHTTSSEEEEES
T ss_pred cccccccccccccccccccccccccchhhHHHHHHH--HHHHHHHcCCCEEEEeC
Confidence 233444555555444334444 99999999999 99999999999999999
No 473
>PLN03130 ABC transporter C family member; Provisional
Probab=99.28 E-value=3.6e-12 Score=162.15 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=106.3
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~ 246 (741)
+.+++++++++++| ++++||+|||||||+++|.+.+.+..|++........ .+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 46899999999999 9999999999999999999999998887754321100 00
Q ss_pred HHHHHhhhhhhhcccccccccc-----------cCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTY-----------FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.... ...+..+..+++..+ +...-.+--..+|||++|++ ++++|+..+|.||+|||
T Consensus 1332 NLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl--aLARALLr~p~ILILDE-------- 1400 (1622)
T PLN03130 1332 NLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL--SLARALLRRSKILVLDE-------- 1400 (1622)
T ss_pred HhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 111000 001111222222222 22122233357999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+|+++|.++.+.+.+.+.+.- .+.++|+++|+++.+.
T Consensus 1401 --ATSaLD~~Te~~Iq~~I~~~~-----~~~TvI~IAHRL~tI~ 1437 (1622)
T PLN03130 1401 --ATAAVDVRTDALIQKTIREEF-----KSCTMLIIAHRLNTII 1437 (1622)
T ss_pred --CCCCCCHHHHHHHHHHHHHHC-----CCCEEEEEeCChHHHH
Confidence 999999999999998887653 2469999999998774
No 474
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.3e-11 Score=137.88 Aligned_cols=140 Identities=31% Similarity=0.471 Sum_probs=110.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh---------ccccchHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV---------DKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 595 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~---------~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~ 595 (741)
.-+||+||||+|||+|++.||..++..|+.++.+.+- ..|+|....++-+-+..|...+| |++|||||.+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm 429 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM 429 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence 3489999999999999999999999999999876442 34899888888888888988887 7779999997
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHH----------HccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLN----------QMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA 665 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~----------~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~ 665 (741)
... ..+|+ ..++.+.|+ +++---...+|++|+|.|..+.|+.+|+- |++ +|+++-++.++
T Consensus 430 ~ss-----~rGDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~E 499 (782)
T COG0466 430 GSS-----FRGDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDE 499 (782)
T ss_pred cCC-----CCCCh--HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHH
Confidence 532 22332 344555554 11111234589999999999999999987 885 59999999999
Q ss_pred HHHHHHHhhc
Q psy11254 666 RLEILKIHAG 675 (741)
Q Consensus 666 r~~i~~~~~~ 675 (741)
..+|.+.||=
T Consensus 500 Kl~IAk~~Li 509 (782)
T COG0466 500 KLEIAKRHLI 509 (782)
T ss_pred HHHHHHHhcc
Confidence 9999999975
No 475
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.27 E-value=1.5e-11 Score=122.91 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHhhhCCCCCCCc-eEEcCCCChHHHHHHHHHHhcCCCceeee-cc---cc-------------cch--hhHHHHHhhhh
Q psy11254 196 LFQRVGITPPKGC-LLYGPPGTGKTLLARAVASQLDANFLKVV-SS---LF-------------VTS--KEDMAILMGNQ 255 (741)
Q Consensus 196 ~~~~~~l~~~~Gv-lL~Gp~GtGKTtL~r~ia~~l~~~~~~v~-~~---~~-------------~~~--~~~~~~~~~~~ 255 (741)
.|+++.+.+..|+ +|+||||+|||||+.+|...++....... +. .+ +.. ..+ ..... .
T Consensus 11 ~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-~~~~~-~ 88 (198)
T cd03276 11 CHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-NPLCV-L 88 (198)
T ss_pred ceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-CcCCH-H
Confidence 3455667777884 79999999999999999865543311000 00 00 000 000 00000 0
Q ss_pred hhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH----hcCCeEEEeccccccccccCCCCCCccHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR----NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~----~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~ 331 (741)
...++..+++. .......+..+|+|+++++ .+++|+ ..+|.++++|| |++++|......+.
T Consensus 89 ~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~--~ia~al~~~~~~~p~illlDE----------P~~glD~~~~~~~~ 153 (198)
T cd03276 89 SQDMARSFLTS---NKAAVRDVKTLSGGERSFS--TVCLLLSLWEVMESPFRCLDE----------FDVFMDMVNRKIST 153 (198)
T ss_pred HHHHHHHHhcc---ccccCCcccccChhHHHHH--HHHHHHHHhcccCCCEEEecC----------cccccCHHHHHHHH
Confidence 01122222322 2334567789999999988 788777 58999999999 99999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 332 ELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 332 ~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+++.++.. ...++.++|++||+++.+.
T Consensus 154 ~~l~~~~~-~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 154 DLLVKEAK-KQPGRQFIFITPQDISGLA 180 (198)
T ss_pred HHHHHHHh-cCCCcEEEEEECCcccccc
Confidence 98887632 1013468999999999886
No 476
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.27 E-value=8.3e-11 Score=118.33 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=103.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE 246 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~ 246 (741)
.-.|++..|.+++|+.+.=++.-...+.+.+ ..++|+||||.||||||+.||++++.++-..++..+....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~l--------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g- 92 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEAL--------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG- 92 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCc--------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh-
Confidence 3468999999999999998887655444332 3589999999999999999999999887666553222111
Q ss_pred HHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
. +-.++. ....-+|||+|||+.+.+. .
T Consensus 93 ------------------------------------D----laaiLt--~Le~~DVLFIDEIHrl~~~-----------v 119 (332)
T COG2255 93 ------------------------------------D----LAAILT--NLEEGDVLFIDEIHRLSPA-----------V 119 (332)
T ss_pred ------------------------------------h----HHHHHh--cCCcCCeEEEehhhhcChh-----------H
Confidence 1 101111 1235579999999988531 2
Q ss_pred HHHHHHHHHhcc-----C--CC------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 327 QRTLMELLNQMD-----G--FD------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 327 ~~~l~~lL~~l~-----~--~~------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
-+.|.-.+..+. | .. .....++|.||.+...+...++. ||.....+..++.++-..|
T Consensus 120 EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~I 189 (332)
T COG2255 120 EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEI 189 (332)
T ss_pred HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHH
Confidence 233333332211 1 00 12457899999999999888887 7876666777777766666
No 477
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=6.7e-11 Score=123.50 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=119.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEec------hhhhccccchHHHHHH---------------------HH
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS------SAIVDKYIGESARLIR---------------------EM 575 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~------~~l~~~~~g~s~~~i~---------------------~~ 575 (741)
.+..++|+||||||||++|+++|..++.+++.+++ +++++.|.|.....+. .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 34678999999999999999999999999988854 3555555432221111 12
Q ss_pred HHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHcc----CCC-------CCCCeEEEEeeCCCC----
Q psy11254 576 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD----GFD-------SLGQVKMIMATNRPD---- 640 (741)
Q Consensus 576 f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~----g~~-------~~~~v~vi~tTn~~~---- 640 (741)
+..++ .+.+|+|||++. .+++....+..+|++-. +.. ...++.||+|+|...
T Consensus 100 ~~A~~--~g~~lllDEi~r-----------~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTR-----------SKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhh-----------CCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22122 246999999998 34556777777776421 111 123567999999763
Q ss_pred -CCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccc------c-ccccccccchHHHHHHHhhhhhh
Q psy11254 641 -TLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAAT------K-WVLPFTAGGFIYIATVSVIPELL 712 (741)
Q Consensus 641 -~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~------~-~l~~~~s~gf~~~a~~~~~~~l~ 712 (741)
.+++++++ || ..++++.|+.++-.+|++.+.+ +. ..+....+ + .-.....+-+..+...+++...
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-~~--~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~- 239 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-VA--EDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ- 239 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-CC--HHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc-
Confidence 56889998 98 6799999999999999998753 11 11111111 0 0111223344444444444444
Q ss_pred hcCCCcccHHHHHHHHHHHHH
Q psy11254 713 EDTSPKQTVKEILALLLGVFM 733 (741)
Q Consensus 713 ~~~~~~~s~~~i~~~l~g~~~ 733 (741)
.-....+-+++..++.-|+.
T Consensus 240 -~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 240 -DIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred -CCCCCCCcHHHHHHHHHHhc
Confidence 23556677778877777653
No 478
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.26 E-value=5.5e-12 Score=131.11 Aligned_cols=68 Identities=9% Similarity=0.167 Sum_probs=57.8
Q ss_pred chhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 275 AIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
..+..+|||+++++ .+++|+. ..|.++++|| |++++|+....++.+++..+.. +.++|+
T Consensus 162 ~~~~~lS~G~~qr~--~la~al~~~~~~~~~illlDE----------Pt~~ld~~~~~~~~~~l~~~~~-----g~~ii~ 224 (251)
T cd03273 162 ESLTELSGGQRSLV--ALSLILALLLFKPAPMYILDE----------VDAALDLSHTQNIGRMIKTHFK-----GSQFIV 224 (251)
T ss_pred ccccccCHHHHHHH--HHHHHHHHhhccCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHcC-----CCEEEE
Confidence 56788999999998 8888886 4779999999 9999999999999999988742 468999
Q ss_pred eeCCCCCCC
Q psy11254 351 ATNRPDTLD 359 (741)
Q Consensus 351 at~~~~~ld 359 (741)
+||+++.+.
T Consensus 225 iSH~~~~~~ 233 (251)
T cd03273 225 VSLKEGMFN 233 (251)
T ss_pred EECCHHHHH
Confidence 999966554
No 479
>PLN03140 ABC transporter G family member; Provisional
Probab=99.26 E-value=5.5e-12 Score=158.35 Aligned_cols=149 Identities=20% Similarity=0.262 Sum_probs=108.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC---ceeeecccc-----------------------cch
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN---FLKVVSSLF-----------------------VTS 244 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~---~~~v~~~~~-----------------------~~~ 244 (741)
...+++++++.+++| ++|+||||||||||+|+|+|.+.+. .|++..... ++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 456899999999999 8899999999999999999998775 555543211 111
Q ss_pred hhHHHHHhh-----h------hh--h---------------------------hcccccccccccCCC-----ccchhhh
Q psy11254 245 KEDMAILMG-----N------QL--K---------------------------RRSTHHLEKTYFPFY-----SSAIVDK 279 (741)
Q Consensus 245 ~~~~~~~~~-----~------~~--~---------------------------~~~~~~l~~~~~~~~-----~~~~~~~ 279 (741)
.+.+.+... . .. . ..+..+++.+++... .+..+..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 122222110 0 00 0 011234455666532 2456789
Q ss_pred hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 280 ~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
+|||+++|+ .+++++..+|+++|+|| |++++|......+.++|.++.. ..+.++|+++|++.
T Consensus 337 lSGGerkRV--sia~aL~~~p~vlllDE----------PTsGLDs~t~~~i~~~Lr~la~---~~g~Tviis~Hqp~ 398 (1470)
T PLN03140 337 ISGGQKKRV--TTGEMIVGPTKTLFMDE----------ISTGLDSSTTYQIVKCLQQIVH---LTEATVLMSLLQPA 398 (1470)
T ss_pred CCcccceee--eehhhhcCCCcEEEEeC----------CCcCccHHHHHHHHHHHHHHHH---hcCCEEEEEecCCC
Confidence 999999999 99999999999999999 9999999999999999998853 24668999999873
No 480
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.26 E-value=1.2e-11 Score=127.93 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=74.0
Q ss_pred ccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC---CeEEEeccccccccccCCCCCCccHHHHHHHHHHHH
Q psy11254 260 STHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 335 (741)
Q Consensus 260 ~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~---P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~ 335 (741)
....++.+++.. ...+.+..+|||+.+++ .+++++..+ |.++++|| |++++|+.....+.+++.
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl--~LAraL~~~~~~p~lllLDE----------PtsgLD~~~~~~l~~~L~ 216 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRI--KLAKELSKRSTGKTLYILDE----------PTTGLHFHDVKKLLEVLQ 216 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHH--HHHHHHhcCCCCCcEEEEEC----------CCCCCCHHHHHHHHHHHH
Confidence 344555667665 35777889999999999 899998875 79999999 999999999999999998
Q ss_pred hccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 336 QMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 336 ~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
.+.. .+.++|++||+++.+. ..|+.+.+.
T Consensus 217 ~l~~----~g~tvIiitH~~~~i~-------~aD~ii~Lg 245 (261)
T cd03271 217 RLVD----KGNTVVVIEHNLDVIK-------CADWIIDLG 245 (261)
T ss_pred HHHh----CCCEEEEEeCCHHHHH-------hCCEEEEec
Confidence 8753 3568999999998764 345566653
No 481
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.25 E-value=1.1e-11 Score=125.49 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=59.8
Q ss_pred cchhhhhcchHHHHHHHHHHHHHhc----------CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCC
Q psy11254 274 SAIVDKYIGESARLIREMFNYARNH----------QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL 343 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~~----------~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~ 343 (741)
...+..+|||+.+++ .+++|++. +|+++++|| |++++|+.....+.+++..+..
T Consensus 118 ~~~~~~lS~G~~~r~--~la~al~~~p~~~~~~~~~~~~lllDE----------p~~~lD~~~~~~~~~~l~~~~~---- 181 (213)
T cd03279 118 ARPVSTLSGGETFLA--SLSLALALSEVLQNRGGARLEALFIDE----------GFGTLDPEALEAVATALELIRT---- 181 (213)
T ss_pred cCCccccCHHHHHHH--HHHHHHHhHHHhhhccCCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----
Confidence 455678999999998 88888864 578999999 9999999999999999988753
Q ss_pred CCeEEEEeeCCCCCCC
Q psy11254 344 GQVKMIMATNRPDTLD 359 (741)
Q Consensus 344 ~~v~vI~at~~~~~ld 359 (741)
.+.++|++||+++.++
T Consensus 182 ~~~tii~itH~~~~~~ 197 (213)
T cd03279 182 ENRMVGVISHVEELKE 197 (213)
T ss_pred CCCEEEEEECchHHHH
Confidence 3669999999998776
No 482
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.25 E-value=9.5e-12 Score=156.69 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=107.8
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc----CCCceeeecccc-------------------------
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL----DANFLKVVSSLF------------------------- 241 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l----~~~~~~v~~~~~------------------------- 241 (741)
.+.+++++++.+.+| ++|+||||+|||||+|+|+|.. .+..|++.....
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 456899999999999 7899999999999999999986 234555543211
Q ss_pred cchhhHHHHHhh-------------hhhhhc-ccccccccccCCCcc-----chhhhhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 242 VTSKEDMAILMG-------------NQLKRR-STHHLEKTYFPFYSS-----AIVDKYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 242 ~~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~~-----~~~~~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
++..+.+..... .+..++ ....++.+++....+ +.+..+|||+++|+ .+++++..+|.|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv--sIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV--SIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH--HHHHHHHhCCCE
Confidence 111112221110 000111 223456666654333 34678999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
+|+|| |++++|......+.++|..+.. ..+.++|+++|++.
T Consensus 231 lllDE----------PTsgLD~~~~~~i~~~L~~la~---~~g~tvii~~Hq~~ 271 (1394)
T TIGR00956 231 QCWDN----------ATRGLDSATALEFIRALKTSAN---ILDTTPLVAIYQCS 271 (1394)
T ss_pred EEEeC----------CCCCcCHHHHHHHHHHHHHHHH---hcCCEEEEEecCCC
Confidence 99999 9999999999999999998864 23678999999973
No 483
>PTZ00243 ABC transporter; Provisional
Probab=99.25 E-value=6.3e-12 Score=159.75 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=106.1
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
.+.++++++|++++| ++++|++|+|||||+++|.+.+.+..|++........ .
T Consensus 1322 ~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 356899999999999 9999999999999999999999988777754321100 0
Q ss_pred hHHHHHhhhhhhhcccccccccccCC-----------CccchhhhhcchHHHHHHHHHHHHHhcC-CeEEEecccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPF-----------YSSAIVDKYIGESARLIREMFNYARNHQ-PCIIFMDEIDAIGG 313 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~-P~ILllDEid~l~~ 313 (741)
+++... ....+..+..+++..++.. ...+--..+|||++|++ +|++|+..+ |.||+|||
T Consensus 1402 eNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL--aLARALL~~~~~ILlLDE------ 1472 (1560)
T PTZ00243 1402 QNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM--CMARALLKKGSGFILMDE------ 1472 (1560)
T ss_pred HHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH--HHHHHHhcCCCCEEEEeC------
Confidence 111100 0011122333333333211 11122246999999999 999999985 89999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+|+++|.++.+.+.+.+...- .+.++|+++|+++.+.
T Consensus 1473 ----ATSaLD~~te~~Iq~~L~~~~-----~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1473 ----ATANIDPALDRQIQATVMSAF-----SAYTVITIAHRLHTVA 1509 (1560)
T ss_pred ----CCccCCHHHHHHHHHHHHHHC-----CCCEEEEEeccHHHHH
Confidence 999999999999988887652 2469999999998764
No 484
>PRK06893 DNA replication initiation factor; Validated
Probab=99.25 E-value=6.7e-11 Score=121.04 Aligned_cols=179 Identities=15% Similarity=0.258 Sum_probs=112.8
Q ss_pred ceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 602 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~ 602 (741)
.++|+||||||||+|+.++|+++ +.....+..... ......+++..+ .+.+|+|||++.+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 47899999999999999999886 233333333221 111123343333 34799999999875322
Q ss_pred CCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeC-CCCCCC---ccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 603 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN-RPDTLD---PALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 603 ~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn-~~~~ld---~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
.....+..+++.+.. .+..++|+|+| .|..++ +.+.++.+....+.++.|+.++|.+|++.+...-
T Consensus 108 ------~~~~~l~~l~n~~~~---~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~- 177 (229)
T PRK06893 108 ------EWELAIFDLFNRIKE---QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR- 177 (229)
T ss_pred ------HHHHHHHHHHHHHHH---cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc-
Confidence 223456666665531 22334455554 466554 7887755667899999999999999999877532
Q ss_pred ccCCCCcccccccccccc-cchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 679 KHGEIGDAATKWVLPFTA-GGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 679 ~~~~~~~~a~~~l~~~~s-~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
+..+++....+++.... +.+...+++..+-..........+...+..++
T Consensus 178 -~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 178 -GIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred -CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 35678888888877655 44455555554432222333357777776655
No 485
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.24 E-value=8.9e-12 Score=158.70 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=105.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------chhhHHHHHhh--hhhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------TSKEDMAILMG--NQLK 257 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------~~~~~~~~~~~--~~~~ 257 (741)
+.+++++++++++| ++++||+|||||||+++|+|.+.+..|.+.....+ +..+++..... .+..
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 45899999999999 88999999999999999999998887776432110 11112211000 0000
Q ss_pred hcccc---ccccccc-----CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 258 RRSTH---HLEKTYF-----PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 258 ~~~~~---~l~~~~~-----~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
..+.+ ..+.... .....+....+|||+++|+ ++++|+..+|+|++||| |++++|+...+.
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi--aLARAl~~~~~illLDE----------p~saLD~~~~~~ 798 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV--SLARAVYSNADIYLFDD----------PLSAVDAHVGKH 798 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEcC----------CccccCHHHHHH
Confidence 11111 1111111 1112334567999999999 99999999999999999 999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+.+.+....+. ..+.++|++||+++.+..
T Consensus 799 i~~~l~~~~~~--~~~~tvIlvTH~~~~l~~ 827 (1522)
T TIGR00957 799 IFEHVIGPEGV--LKNKTRILVTHGISYLPQ 827 (1522)
T ss_pred HHHHHhhhhhh--hcCCEEEEEeCChhhhhh
Confidence 88887543321 134689999999987753
No 486
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2e-10 Score=126.22 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=121.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhC---------ccEEEEechhhhc----------ccc---------c-hHHHHHHH
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLD---------ANFLKVVSSAIVD----------KYI---------G-ESARLIRE 574 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~---------~~~~~v~~~~l~~----------~~~---------g-~s~~~i~~ 574 (741)
+..++++||||||||++++.++..+. ..++.+++....+ ... | ........
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45689999999999999999998653 3466666543221 110 1 11233455
Q ss_pred HHHHHH-hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCC-CCCCCeEEEEeeCCCC---CCCccccCC
Q psy11254 575 MFNYAR-NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF-DSLGQVKMIMATNRPD---TLDPALLRP 649 (741)
Q Consensus 575 ~f~~a~-~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~-~~~~~v~vi~tTn~~~---~ld~al~rp 649 (741)
+++... ...+.||+|||+|.+.... ...+.+++...+.. ....++.+|++||.++ .+++.+.+
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s- 187 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS- 187 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc-
Confidence 555543 2457899999999986211 12455555442111 1224688999999886 46777766
Q ss_pred CCcc-eEEEcCCCCHHHHHHHHHHhhcCccccCCCCccccccccccc--ccchHHH--HHHHhhhhhh-hcCCCcccHHH
Q psy11254 650 GRLD-RKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFT--AGGFIYI--ATVSVIPELL-EDTSPKQTVKE 723 (741)
Q Consensus 650 gR~d-~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~--s~gf~~~--a~~~~~~~l~-~~~~~~~s~~~ 723 (741)
||. ..|+|++++.++..+|++.++........+++.....+.... ++|.... .+...+-..+ .+.....+.+|
T Consensus 188 -~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~ 266 (365)
T TIGR02928 188 -SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDH 266 (365)
T ss_pred -cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 674 789999999999999999887521112234554444332221 2233333 3333333333 33456799999
Q ss_pred HHHHHHHHHHHH
Q psy11254 724 ILALLLGVFMMV 735 (741)
Q Consensus 724 i~~~l~g~~~~~ 735 (741)
+..++.-+....
T Consensus 267 v~~a~~~~~~~~ 278 (365)
T TIGR02928 267 VEKAQEKIEKDR 278 (365)
T ss_pred HHHHHHHHHHHH
Confidence 998776664443
No 487
>PTZ00243 ABC transporter; Provisional
Probab=99.23 E-value=1e-11 Score=157.91 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=102.3
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------cchhhHHHHHhhh---
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------VTSKEDMAILMGN--- 254 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------~~~~~~~~~~~~~--- 254 (741)
....+++++++.+++| ++|+||||||||||+++|+|.+.+..|.+..... .+..+++......
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 4456899999999999 8899999999999999999999887776543110 0111222111000
Q ss_pred hhhh-----ccccccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 255 QLKR-----RSTHHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 255 ~~~~-----~~~~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
.... .+...++.+ ++.....+....+|||+++++ .+++|+..+|+|++||| |++++|+...
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv--aLARAl~~~p~illLDE----------P~saLD~~~~ 818 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV--SLARAVYANRDVYLLDD----------PLSALDAHVG 818 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEcC----------ccccCCHHHH
Confidence 0000 001111111 222223455678999999999 99999999999999999 9999999887
Q ss_pred HHHHHH-HHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 328 RTLMEL-LNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 328 ~~l~~l-L~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
..+.+. +.... .+.++|++||+++.++
T Consensus 819 ~~i~~~~~~~~~-----~~~TvIlvTH~~~~~~ 846 (1560)
T PTZ00243 819 ERVVEECFLGAL-----AGKTRVLATHQVHVVP 846 (1560)
T ss_pred HHHHHHHHHHhh-----CCCEEEEEeCCHHHHH
Confidence 766553 32211 2568999999998764
No 488
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.23 E-value=1.3e-11 Score=157.27 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=105.6
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~ 246 (741)
+.+++++++++++| ++++|++|+|||||+++|.+.+.+..|++........ .+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 46999999999999 9999999999999999999999988777754321100 00
Q ss_pred HHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++... ++..+..+..+++..++ ...-.+--..+|||++|++ ++++|+..+|.||+|||
T Consensus 1379 NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl--~LARALLr~~~ILiLDE-------- 1447 (1522)
T TIGR00957 1379 NLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV--CLARALLRKTKILVLDE-------- 1447 (1522)
T ss_pred HcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 11100 01111122222322222 1111222356899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+|+++|.++...+.+.+...- .+.++|+++|+++.+.
T Consensus 1448 --aTSalD~~Te~~Iq~~l~~~~-----~~~TvI~IAHRl~ti~ 1484 (1522)
T TIGR00957 1448 --ATAAVDLETDNLIQSTIRTQF-----EDCTVLTIAHRLNTIM 1484 (1522)
T ss_pred --CcccCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 999999999999988887643 2469999999998765
No 489
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.23 E-value=3e-11 Score=121.88 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=91.0
Q ss_pred CCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecc---------------------cccchhhHHH
Q psy11254 191 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS---------------------LFVTSKEDMA 249 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~---------------------~~~~~~~~~~ 249 (741)
+....+++++++ .-++|+||||+||||++++|....+.+....... .++.......
T Consensus 14 ~~~~~~l~~~~~---~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (212)
T cd03274 14 YAGEQVIGPFHK---SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKP 90 (212)
T ss_pred CCCCeeeccCCC---CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHH
Confidence 344455554444 2367999999999999999985544321111000 0000000000
Q ss_pred HH--hhhhhhh-c----ccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc----CCeEEEeccccccccccCCC
Q psy11254 250 IL--MGNQLKR-R----STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH----QPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 250 ~~--~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~----~P~ILllDEid~l~~~~~~p 318 (741)
.+ .+-.... + ....++..+++......+..+++|+++++ .+++|+.. .|.++++|| |
T Consensus 91 ~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~--~la~al~~~~~~~p~ililDE----------P 158 (212)
T cd03274 91 LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLS--SLALVFALHHYKPTPLYVMDE----------I 158 (212)
T ss_pred HHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHH--HHHHHHHhcccCCCCEEEEcC----------C
Confidence 00 0000000 0 13334445555555666789999999988 88888753 479999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
++++|+.....+.+++.++.. +.++|++||+++
T Consensus 159 t~gLD~~~~~~l~~~l~~~~~-----~~~~iivs~~~~ 191 (212)
T cd03274 159 DAALDFRNVSIVANYIKERTK-----NAQFIVISLRNN 191 (212)
T ss_pred CcCCCHHHHHHHHHHHHHHcC-----CCEEEEEECcHH
Confidence 999999999999999998753 357888888754
No 490
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.22 E-value=3.1e-11 Score=150.49 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=72.7
Q ss_pred cccccccCCC-ccchhhhhcchHHHHHHHHHHHHHh---cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 263 HLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARN---HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 263 ~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~---~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
.++.+++... ..+.+.++|||+++++ .+++|+. .+|.+++||| |++++|+.....+.+++..+.
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV--~LAraL~~~~~~P~LLILDE----------PTsGLD~~~~~~Ll~lL~~L~ 859 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRL--KLAYELLAPSKKPTLYVLDE----------PTTGLHTHDIKALIYVLQSLT 859 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHH--HHHHHHhhcCCCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH
Confidence 5555666554 5778889999999999 8999986 6899999999 999999999999999999886
Q ss_pred CCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 339 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
. .+.+||++||+++.+. ..|+.+.+
T Consensus 860 ~----~G~TVIiIsHdl~~i~-------~aDrVi~L 884 (1809)
T PRK00635 860 H----QGHTVVIIEHNMHVVK-------VADYVLEL 884 (1809)
T ss_pred h----cCCEEEEEeCCHHHHH-------hCCEEEEE
Confidence 4 3568999999998762 34556665
No 491
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=9.6e-12 Score=157.93 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=102.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------chhhHHHHHhhhhhhhc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------TSKEDMAILMGNQLKRR 259 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------~~~~~~~~~~~~~~~~~ 259 (741)
..+++++++++++| ++++||||||||||+++|+|.+.+..|.+.....+ +..+++.+..... ..+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~-~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYD-EYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccc-hHH
Confidence 45889999999999 78999999999999999999998887776532110 1122222110000 000
Q ss_pred cccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 260 STHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 260 ~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
...+++..++ .....+....+|||+++++ .+++|+..+|+|++||| |++++|....+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi--~lARAl~~~~~illLDe----------p~saLD~~~~~ 585 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI--SLARAVYKDADLYLLDS----------PFTHLDVVTEK 585 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHH--HHHHHHHcCCCEEEEeC----------CcccCCHHHHH
Confidence 1111111111 0111233568999999999 99999999999999999 99999999999
Q ss_pred HHHHH-HHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 329 TLMEL-LNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 329 ~l~~l-L~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
.+.+. +..+. .+.++|++||+++.+.
T Consensus 586 ~i~~~~l~~~~-----~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 586 EIFESCLCKLM-----SNKTRILVTSKLEHLK 612 (1490)
T ss_pred HHHHHHHHHHh-----cCCeEEEEeCChHHHH
Confidence 98874 44432 2568999999998764
No 492
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=1.1e-11 Score=157.54 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=104.2
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
.+.++++++|++++| ++++|++|+|||||+++|+|.+. ..|++........ .
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR 1309 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHH
Confidence 467999999999999 99999999999999999999985 5566643211100 0
Q ss_pred hHHHHHhhhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++... +...+..+..+++..++. ....+--..+|||++|++ ++++|+..+|.||+|||
T Consensus 1310 ~NLdp~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL--~LARALLr~~~ILlLDE------- 1379 (1490)
T TIGR01271 1310 KNLDPY-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM--CLARSILSKAKILLLDE------- 1379 (1490)
T ss_pred HHhCcc-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH--HHHHHHhCCCCEEEEeC-------
Confidence 111100 001122233333333321 111122235899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
||+++|.++...+.+.+.... .+.+||++||+++.+.
T Consensus 1380 ---aTS~lD~~Te~~I~~~L~~~~-----~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1380 ---PSAHLDPVTLQIIRKTLKQSF-----SNCTVILSEHRVEALL 1416 (1490)
T ss_pred ---CcccCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 999999999999998887653 2469999999987664
No 493
>KOG0062|consensus
Probab=99.22 E-value=2.4e-11 Score=130.91 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=121.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
.+|.+.++++. +.+.-..+.++.++|++...- +..+|+||+||||+.|++.+.+.+..+-+....-
T Consensus 359 ~~p~l~i~~V~------------f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r 426 (582)
T KOG0062|consen 359 SPPNLRISYVA------------FEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR 426 (582)
T ss_pred CCCeeEEEeee------------ccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc
Confidence 35566666664 444444447888888877654 8899999999999999999998866544432211
Q ss_pred c--ch---------------hhHHHHHhhhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEE
Q psy11254 242 V--TS---------------KEDMAILMGNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCII 303 (741)
Q Consensus 242 ~--~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~IL 303 (741)
. .. .+.+..............++..+|+... ....+..+|||+.-++ +|+.+...+|-+|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv--afA~~~~~~PhlL 504 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV--AFAACTWNNPHLL 504 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHH--HHHHHhcCCCcEE
Confidence 0 00 0011111111233445567777777543 3344788999998888 9999999999999
Q ss_pred EeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 304 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 304 llDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
+||| |||++|.++...|...|+.+.| -||++||+.++++..|.
T Consensus 505 VLDE----------PTNhLD~dsl~AL~~Al~~F~G-------GVv~VSHd~~fi~~~c~ 547 (582)
T KOG0062|consen 505 VLDE----------PTNHLDRDSLGALAKALKNFNG-------GVVLVSHDEEFISSLCK 547 (582)
T ss_pred EecC----------CCccccHHHHHHHHHHHHhcCC-------cEEEEECcHHHHhhcCc
Confidence 9999 9999999999999999988877 58999999999986654
No 494
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.21 E-value=2.3e-10 Score=127.49 Aligned_cols=143 Identities=31% Similarity=0.460 Sum_probs=99.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh----cCCeEEEEcccccccCCCC
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRF 600 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~----~~p~Vl~iDE~d~~~~~r~ 600 (741)
.+++|+|||||||||+|++++..++.+|+.++.... +...++.+++.+.. ....||||||++.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---- 105 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN---- 105 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC----
Confidence 468999999999999999999999999998877532 22345566666532 246899999999862
Q ss_pred CCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEee--CCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 601 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT--NRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 601 ~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tT--n~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
...+. .|+..++. +.+++|++| |....+++++.+ |+ .++.|++|+.++...+++..+....
T Consensus 106 -------~~~q~---~LL~~le~----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 106 -------KAQQD---ALLPHVED----GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred -------HHHHH---HHHHHhhc----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 12223 34444442 356667655 334578899998 88 7899999999999999998775432
Q ss_pred ccC-CCCccccccccccc
Q psy11254 679 KHG-EIGDAATKWVLPFT 695 (741)
Q Consensus 679 ~~~-~~~~~a~~~l~~~~ 695 (741)
.+. .+++.+...+....
T Consensus 169 ~~~i~i~~~al~~l~~~s 186 (413)
T PRK13342 169 RGLVELDDEALDALARLA 186 (413)
T ss_pred cCCCCCCHHHHHHHHHhC
Confidence 222 45665555555443
No 495
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.21 E-value=6e-11 Score=133.70 Aligned_cols=188 Identities=19% Similarity=0.316 Sum_probs=118.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhccccchHHH-HHHHHHHHHHhcCCeEEEEcccccccCC
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVDKYIGESAR-LIREMFNYARNHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~~~~g~s~~-~i~~~f~~a~~~~p~Vl~iDE~d~~~~~ 598 (741)
..++|+||+|||||+|+++++.++ +..++.+++.++...+...... ....+.+..+ .+.+|+|||++.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 458999999999999999999987 3457788888876665443221 1222323222 4679999999997543
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCC-CCC---CCccccCCCCcc--eEEEcCCCCHHHHHHHHHH
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR-PDT---LDPALLRPGRLD--RKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~-~~~---ld~al~rpgR~d--~~i~~~~p~~~~r~~i~~~ 672 (741)
+ ..++.+..+++.+-. .+.. +|+|||. |.. +++.+.. ||. ..+.+++|+.++|.+|++.
T Consensus 227 ~---------~~~~~l~~~~n~l~~---~~~~-iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHE---AGKQ-IVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred H---------HHHHHHHHHHHHHHH---CCCc-EEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHH
Confidence 2 122334444443321 1223 4555554 444 6677776 896 5899999999999999999
Q ss_pred hhcCccccCCCCcccccccccccc-cchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 673 HAGPIAKHGEIGDAATKWVLPFTA-GGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 673 ~~~~~~~~~~~~~~a~~~l~~~~s-~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
++... +..+++..+.+++.... +.+....++..+...........+...+..++..+
T Consensus 292 ~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 88752 34677777777776544 33333333333333333334445666666665543
No 496
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.4e-10 Score=122.22 Aligned_cols=142 Identities=30% Similarity=0.458 Sum_probs=88.8
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+++++.|.+...-+ ...+.+-+.-.--...+|+|||||||||||++||+..+..|..++..
T Consensus 21 ~~lde~vGQ~HLlg~----------~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------- 82 (436)
T COG2256 21 KSLDEVVGQEHLLGE----------GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------- 82 (436)
T ss_pred CCHHHhcChHhhhCC----------CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------
Confidence 457778887764422 11122222111123478999999999999999999999999888641
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc----CCeEEEeccccccccccCCCCCCcc
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH----QPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~----~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
. .+.+.+|++++.|... +--|||+|||+.+-
T Consensus 83 --------------------------------~--~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn----------- 117 (436)
T COG2256 83 --------------------------------T--SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN----------- 117 (436)
T ss_pred --------------------------------c--ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------
Confidence 1 1234466677777432 24699999998762
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEe-eCCCCC-CCccccCCCccceeeecCCCCHHHH
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMA-TNRPDT-LDPALLRPGRLDRKIEIPLPNEQAR 382 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~a-t~~~~~-ld~al~r~gr~d~~i~~~~p~~~~r 382 (741)
..++..|+-+ +. .+.+++|++ |-+|.+ ++++++.+.+ ++++.+-+.++-
T Consensus 118 K~QQD~lLp~---vE----~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di 168 (436)
T COG2256 118 KAQQDALLPH---VE----NGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDI 168 (436)
T ss_pred hhhhhhhhhh---hc----CCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHH
Confidence 2334444433 33 356777775 457775 8899987433 356655555443
No 497
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.20 E-value=9e-11 Score=121.43 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=55.8
Q ss_pred cchhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 274 SAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
...+..+|||+++++ .+++|+. ..|.++++|| |++++|+...+.+.+.+.++.. +.++|
T Consensus 153 ~~~~~~lS~G~~~r~--~la~~l~~~~~~~~~illlDE----------p~~~ld~~~~~~~~~~l~~~~~-----~~~ii 215 (243)
T cd03272 153 QQEMQQLSGGQKSLV--ALALIFAIQKCDPAPFYLFDE----------IDAALDAQYRTAVANMIKELSD-----GAQFI 215 (243)
T ss_pred cccccccCHHHHHHH--HHHHHHHHhccCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHhC-----CCEEE
Confidence 456788999999998 8998885 3589999999 9999999999999999988742 35788
Q ss_pred EeeCCCCC
Q psy11254 350 MATNRPDT 357 (741)
Q Consensus 350 ~at~~~~~ 357 (741)
++||+++.
T Consensus 216 ~~~h~~~~ 223 (243)
T cd03272 216 TTTFRPEL 223 (243)
T ss_pred EEecCHHH
Confidence 88887553
No 498
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.19 E-value=1.9e-11 Score=137.12 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=101.3
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----c------cchhhHHHHH----hhh--h
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----F------VTSKEDMAIL----MGN--Q 255 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~------~~~~~~~~~~----~~~--~ 255 (741)
.+++++++.++.| +++.||||||||||+|+|||......+++.... + +... .+... ... -
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~ 485 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG-TLREALCYPNAAPDF 485 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc-cHHHHHhCCCCCCCC
Confidence 6788889999999 899999999999999999999876666654430 0 0000 11110 000 0
Q ss_pred hhhcccccccccccCCCc------cchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPFYS------SAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~------~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
.+......+..++++... ++--..+|+|++|++ +|++++.++|+++|||| .|+++|++....
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl--afARilL~kP~~v~LDE----------ATsALDe~~e~~ 553 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL--AFARLLLHKPKWVFLDE----------ATSALDEETEDR 553 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH--HHHHHHHcCCCEEEEec----------chhccChHHHHH
Confidence 111222333333333221 122345789999999 99999999999999999 899999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
+.+++++- ..+++||-++|++...
T Consensus 554 l~q~l~~~-----lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 554 LYQLLKEE-----LPDATVISVGHRPTLW 577 (604)
T ss_pred HHHHHHhh-----CCCCEEEEeccchhhH
Confidence 99988652 2457999999987643
No 499
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.9e-10 Score=128.90 Aligned_cols=174 Identities=19% Similarity=0.277 Sum_probs=113.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCc------------------------cEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDA------------------------NFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~------------------------~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
..++|+|||||||||+|+++|..++. +++.++++. ......++.+.+.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~ 110 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVG 110 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHh
Confidence 45899999999999999999998753 344443321 111234566666554
Q ss_pred hc----CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEE
Q psy11254 581 NH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKI 656 (741)
Q Consensus 581 ~~----~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i 656 (741)
.. ...|+|+||++.+. ...++.||..++.. .+.+++|++||.+..+++++.+ |+. .+
T Consensus 111 ~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv 171 (472)
T PRK14962 111 YRPMEGKYKVYIIDEVHMLT--------------KEAFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VI 171 (472)
T ss_pred hChhcCCeEEEEEEChHHhH--------------HHHHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EE
Confidence 32 34699999999862 23455667777643 3467788888888899999987 774 79
Q ss_pred EcCCCCHHHHHHHHHHhhcCccccCCCCccccccccccccc-chHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 657 EIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAG-GFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 657 ~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~-gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
.|++|+.++...+++..+... +..+++.++..+.....+ .+...+.++. ++.-.....+.+++..++
T Consensus 172 ~f~~l~~~el~~~L~~i~~~e--gi~i~~eal~~Ia~~s~GdlR~aln~Le~---l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 172 EFRNISDELIIKRLQEVAEAE--GIEIDREALSFIAKRASGGLRDALTMLEQ---VWKFSEGKITLETVHEAL 239 (472)
T ss_pred EECCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcCCCCCHHHHHHHH
Confidence 999999999999888776532 335677777666654333 2333333333 222222247777776554
No 500
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=8.4e-10 Score=121.32 Aligned_cols=240 Identities=23% Similarity=0.272 Sum_probs=130.0
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC---------Cceeeeccc
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA---------NFLKVVSSL 240 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~---------~~~~v~~~~ 240 (741)
.+++.|-++++++|...+.-.. . + ..+..++++||||||||++++.++..+.. .+..+.+..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~------~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL------R--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH------c--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3468999999999999875321 1 1 22345889999999999999999987642 122222211
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH-hcCCeEEEeccccccccccCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR-NHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~-~~~P~ILllDEid~l~~~~~~p~ 319 (741)
......-+..+.. .+.. .+... + ...+ ...+.....+.... ...|.||+|||+|.+... .
T Consensus 85 ~~~~~~~~~~i~~-~l~~--------~~~~~--~--~~~~--~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----~ 145 (365)
T TIGR02928 85 LDTLYQVLVELAN-QLRG--------SGEEV--P--TTGL--STSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----D 145 (365)
T ss_pred CCCHHHHHHHHHH-HHhh--------cCCCC--C--CCCC--CHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----C
Confidence 1111111111110 0000 00000 0 0000 01122222333332 245779999999999721 1
Q ss_pred CCccHHHHHHHHHHHHhcc-CCCCCCCeEEEEeeCCCCC---CCccccCCCcc-ceeeecCCCCHHHHHhccccchhccC
Q psy11254 320 TSADREIQRTLMELLNQMD-GFDSLGQVKMIMATNRPDT---LDPALLRPGRL-DRKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~-~~~~~~~v~vI~at~~~~~---ld~al~r~gr~-d~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
. ..+.+++.... ......++.+|+++|+++. +++.+.+ || ...+.|++++.++..++ +.....
T Consensus 146 ~-------~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~i---l~~r~~ 213 (365)
T TIGR02928 146 D-------DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDI---LENRAE 213 (365)
T ss_pred c-------HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHH---HHHHHH
Confidence 1 23344443311 1112357899999999875 5555554 55 36789999999888887 333221
Q ss_pred CCcccCCCC---HHHH---HHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 395 PIAKHGEID---YEAV---VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 395 ~~~~~~~~~---~~~l---a~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
.......++ ...+ +..+.|. .+..-.+|+.|+..+..+....++.+++..+....
T Consensus 214 ~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 214 KAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred hhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 000001111 1222 2333343 34455678888887777777778888888877654
Done!