Query psy11254
Match_columns 741
No_of_seqs 706 out of 5169
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:07:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.9E-77 1E-81 698.5 32.9 483 163-708 196-695 (806)
2 4b4t_J 26S protease regulatory 100.0 1.8E-58 6.1E-63 498.8 37.4 374 8-452 13-391 (405)
3 4b4t_L 26S protease subunit RP 100.0 5.8E-58 2E-62 503.1 36.0 375 10-455 53-427 (437)
4 4b4t_I 26S protease regulatory 100.0 2.1E-57 7.4E-62 490.8 34.9 373 10-453 53-426 (437)
5 1ypw_A Transitional endoplasmi 100.0 1.8E-56 6.2E-61 533.0 27.7 487 164-713 197-700 (806)
6 4b4t_K 26S protease regulatory 100.0 2.4E-54 8.2E-59 473.8 36.9 348 33-451 67-415 (428)
7 4b4t_M 26S protease regulatory 100.0 3E-54 1E-58 473.2 32.9 381 28-453 45-425 (434)
8 4b4t_H 26S protease regulatory 100.0 9.9E-53 3.4E-57 458.8 31.7 309 106-452 144-452 (467)
9 4b4t_J 26S protease regulatory 100.0 5.7E-42 1.9E-46 370.1 22.2 232 501-732 159-390 (405)
10 4b4t_I 26S protease regulatory 100.0 8.6E-41 2.9E-45 361.3 20.9 232 501-732 193-424 (437)
11 4b4t_L 26S protease subunit RP 100.0 3.2E-40 1.1E-44 362.4 21.9 232 501-732 192-423 (437)
12 4b4t_H 26S protease regulatory 100.0 6.3E-40 2.1E-44 358.0 21.1 231 502-732 221-451 (467)
13 4b4t_M 26S protease regulatory 100.0 3.6E-40 1.2E-44 361.7 18.5 229 502-730 193-421 (434)
14 4b4t_K 26S protease regulatory 100.0 4.4E-39 1.5E-43 352.9 19.4 230 502-731 184-414 (428)
15 3cf2_A TER ATPase, transitiona 100.0 3.9E-39 1.3E-43 377.0 14.7 235 162-434 468-702 (806)
16 2x8a_A Nuclear valosin-contain 100.0 1.1E-34 3.9E-39 303.4 19.2 248 164-452 3-266 (274)
17 2ce7_A Cell division protein F 100.0 3.2E-32 1.1E-36 303.6 24.9 249 165-452 10-258 (476)
18 3cf0_A Transitional endoplasmi 100.0 3.2E-32 1.1E-36 289.3 19.3 232 164-433 8-239 (301)
19 3h4m_A Proteasome-activating n 100.0 1E-30 3.5E-35 275.3 23.4 253 162-452 8-260 (285)
20 1lv7_A FTSH; alpha/beta domain 100.0 6E-30 2.1E-34 265.5 24.4 249 164-451 5-253 (257)
21 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.7E-30 9.2E-35 276.8 20.7 227 164-434 5-234 (322)
22 1r6b_X CLPA protein; AAA+, N-t 100.0 2.1E-29 7.2E-34 300.8 30.1 419 168-677 183-669 (758)
23 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-29 4.9E-34 283.7 23.3 249 166-453 26-274 (499)
24 1ixz_A ATP-dependent metallopr 100.0 3.7E-29 1.3E-33 259.0 24.0 246 163-447 8-253 (254)
25 3eie_A Vacuolar protein sortin 100.0 1.1E-29 3.8E-34 272.4 20.2 232 162-437 9-242 (322)
26 3pxi_A Negative regulator of g 100.0 1E-28 3.6E-33 294.4 29.4 424 168-692 177-700 (758)
27 3hu3_A Transitional endoplasmi 100.0 1.6E-28 5.6E-33 275.9 23.3 229 166-435 199-427 (489)
28 2qp9_X Vacuolar protein sortin 100.0 6E-29 2E-33 270.0 19.1 227 164-434 44-272 (355)
29 2x8a_A Nuclear valosin-contain 100.0 7.7E-29 2.6E-33 259.2 16.9 224 504-730 24-263 (274)
30 1iy2_A ATP-dependent metallopr 100.0 1.2E-27 4.2E-32 251.1 24.7 244 165-447 34-277 (278)
31 2ce7_A Cell division protein F 100.0 5.7E-28 2E-32 269.3 22.7 222 511-732 36-257 (476)
32 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.1E-28 1.1E-32 252.8 17.1 248 166-452 1-251 (262)
33 3cf0_A Transitional endoplasmi 100.0 8.8E-29 3E-33 262.8 12.8 198 505-702 30-227 (301)
34 1ypw_A Transitional endoplasmi 100.0 9.3E-30 3.2E-34 303.2 3.7 235 162-434 468-702 (806)
35 2zan_A Vacuolar protein sortin 100.0 5.9E-28 2E-32 269.8 16.9 228 163-434 126-356 (444)
36 1qvr_A CLPB protein; coiled co 99.9 5.9E-27 2E-31 282.3 22.6 447 168-693 167-796 (854)
37 3h4m_A Proteasome-activating n 99.9 7.1E-27 2.4E-31 245.9 19.9 227 506-732 33-259 (285)
38 1lv7_A FTSH; alpha/beta domain 99.9 2.3E-26 7.7E-31 238.5 22.8 219 513-731 34-252 (257)
39 2r62_A Cell division protease 99.9 1.4E-28 4.8E-33 256.7 4.4 250 164-452 4-255 (268)
40 3b9p_A CG5977-PA, isoform A; A 99.9 1.8E-26 6.3E-31 244.3 17.8 247 163-450 13-272 (297)
41 2dhr_A FTSH; AAA+ protein, hex 99.9 3.5E-26 1.2E-30 256.3 20.9 220 512-731 52-271 (499)
42 3d8b_A Fidgetin-like protein 1 99.9 1.3E-25 4.5E-30 244.0 19.6 246 163-452 76-336 (357)
43 1ixz_A ATP-dependent metallopr 99.9 4.1E-25 1.4E-29 228.6 22.0 217 512-728 37-253 (254)
44 1xwi_A SKD1 protein; VPS4B, AA 99.9 8E-26 2.7E-30 242.1 16.5 168 505-678 27-196 (322)
45 3hu3_A Transitional endoplasmi 99.9 4.7E-25 1.6E-29 247.9 18.9 227 504-733 218-461 (489)
46 3vfd_A Spastin; ATPase, microt 99.9 1.1E-24 3.8E-29 239.7 20.1 245 162-450 106-365 (389)
47 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.3E-25 1.5E-29 229.1 15.8 221 513-733 28-251 (262)
48 3eie_A Vacuolar protein sortin 99.9 1.7E-25 5.9E-30 239.7 12.8 166 507-678 35-201 (322)
49 1iy2_A ATP-dependent metallopr 99.9 3.9E-24 1.3E-28 224.4 22.4 217 512-728 61-277 (278)
50 2c9o_A RUVB-like 1; hexameric 99.9 2.3E-25 7.9E-30 250.0 11.8 360 165-728 31-434 (456)
51 2qp9_X Vacuolar protein sortin 99.9 4.7E-25 1.6E-29 239.3 13.6 167 506-678 67-234 (355)
52 3t15_A Ribulose bisphosphate c 99.9 3.1E-24 1.1E-28 226.7 11.9 154 520-676 32-200 (293)
53 2r62_A Cell division protease 99.9 3.2E-25 1.1E-29 231.2 4.2 218 511-728 31-250 (268)
54 2zan_A Vacuolar protein sortin 99.9 2.9E-24 9.9E-29 239.9 9.9 166 507-678 151-318 (444)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 8.7E-23 3E-27 232.5 10.5 160 186-362 26-225 (538)
56 3d8b_A Fidgetin-like protein 1 99.9 4E-22 1.4E-26 216.6 14.8 214 510-731 104-334 (357)
57 3b9p_A CG5977-PA, isoform A; A 99.9 6.5E-22 2.2E-26 209.3 15.1 174 510-691 41-217 (297)
58 3ozx_A RNAse L inhibitor; ATP 99.9 3.6E-22 1.2E-26 226.8 11.5 152 194-362 11-204 (538)
59 3bk7_A ABC transporter ATP-bin 99.9 3.4E-22 1.2E-26 229.9 10.1 159 185-360 95-293 (607)
60 3vfd_A Spastin; ATPase, microt 99.9 1.2E-21 4E-26 215.5 13.0 159 512-676 137-297 (389)
61 3t15_A Ribulose bisphosphate c 99.9 1.4E-21 4.7E-26 206.4 13.0 178 201-422 32-223 (293)
62 1g41_A Heat shock protein HSLU 99.8 6.8E-21 2.3E-25 209.2 16.0 168 171-385 15-187 (444)
63 3j16_B RLI1P; ribosome recycli 99.8 6.4E-21 2.2E-25 218.9 15.7 143 203-361 99-287 (608)
64 2iw3_A Elongation factor 3A; a 99.8 1.3E-20 4.4E-25 223.9 8.0 156 187-362 441-612 (986)
65 3m6a_A ATP-dependent protease 99.8 2.5E-20 8.7E-25 212.8 3.2 289 108-448 16-339 (543)
66 3ux8_A Excinuclease ABC, A sub 99.8 3.3E-19 1.1E-23 209.3 12.0 79 264-358 186-267 (670)
67 3gfo_A Cobalt import ATP-bindi 99.8 1.6E-19 5.5E-24 187.7 7.4 160 188-362 14-211 (275)
68 1g6h_A High-affinity branched- 99.8 2.1E-19 7.3E-24 185.7 8.2 158 189-362 15-220 (257)
69 1sgw_A Putative ABC transporte 99.8 7.2E-20 2.5E-24 183.4 4.0 158 188-363 17-201 (214)
70 2c9o_A RUVB-like 1; hexameric 99.8 7.4E-20 2.5E-24 205.2 4.0 151 520-671 59-236 (456)
71 2pcj_A ABC transporter, lipopr 99.8 1.2E-19 4.1E-24 183.6 4.8 154 189-358 12-203 (224)
72 4g1u_C Hemin import ATP-bindin 99.8 7.2E-20 2.5E-24 189.8 3.1 158 188-360 18-213 (266)
73 1vpl_A ABC transporter, ATP-bi 99.8 2.4E-19 8.1E-24 184.8 5.6 155 189-359 23-210 (256)
74 2olj_A Amino acid ABC transpor 99.8 2E-19 6.9E-24 185.9 4.9 156 189-360 32-224 (263)
75 3rlf_A Maltose/maltodextrin im 99.8 9.6E-20 3.3E-24 196.5 2.1 158 187-359 9-198 (381)
76 3fvq_A Fe(3+) IONS import ATP- 99.8 1.1E-19 3.7E-24 194.8 2.0 158 187-359 10-203 (359)
77 2nq2_C Hypothetical ABC transp 99.8 2E-19 7E-24 185.1 3.8 156 189-359 12-193 (253)
78 1z47_A CYSA, putative ABC-tran 99.7 2.8E-19 9.5E-24 191.8 4.4 157 188-359 21-210 (355)
79 3tui_C Methionine import ATP-b 99.7 3.8E-19 1.3E-23 190.6 5.1 152 194-360 41-229 (366)
80 1b0u_A Histidine permease; ABC 99.7 2.9E-19 9.8E-24 185.1 3.5 155 189-359 14-217 (262)
81 3cmw_A Protein RECA, recombina 99.7 4.4E-19 1.5E-23 220.5 5.8 130 509-639 1064-1218(1706)
82 3tif_A Uncharacterized ABC tra 99.7 8.3E-19 2.9E-23 178.7 6.7 148 195-357 19-208 (235)
83 2yyz_A Sugar ABC transporter, 99.7 2.9E-19 9.8E-24 192.1 3.2 157 188-359 10-198 (359)
84 2yz2_A Putative ABC transporte 99.7 1.2E-18 4E-23 181.0 6.6 153 194-362 20-205 (266)
85 1ji0_A ABC transporter; ATP bi 99.7 2.7E-19 9.1E-24 183.0 1.7 155 189-359 14-203 (240)
86 2d2e_A SUFC protein; ABC-ATPas 99.7 1.3E-18 4.5E-23 179.0 6.5 156 188-359 10-207 (250)
87 2it1_A 362AA long hypothetical 99.7 1.6E-18 5.4E-23 186.6 7.0 157 188-359 10-198 (362)
88 2ihy_A ABC transporter, ATP-bi 99.7 6.5E-19 2.2E-23 183.8 3.2 156 189-360 29-228 (279)
89 3d31_A Sulfate/molybdate ABC t 99.7 2.9E-18 1E-22 183.7 8.0 156 188-359 8-192 (348)
90 2pjz_A Hypothetical protein ST 99.7 2.4E-18 8.4E-23 177.8 6.8 146 194-360 18-190 (263)
91 1g29_1 MALK, maltose transport 99.7 1E-18 3.5E-23 189.1 3.6 157 188-359 10-204 (372)
92 1v43_A Sugar-binding transport 99.7 1.6E-18 5.6E-23 187.1 5.0 157 188-359 18-206 (372)
93 2ixe_A Antigen peptide transpo 99.7 7.9E-18 2.7E-22 175.1 8.7 151 194-359 32-221 (271)
94 2ff7_A Alpha-hemolysin translo 99.7 2.1E-18 7.1E-23 177.1 4.0 150 193-359 21-208 (247)
95 2zu0_C Probable ATP-dependent 99.7 5.6E-18 1.9E-22 175.9 7.3 155 189-359 28-228 (267)
96 1oxx_K GLCV, glucose, ABC tran 99.7 7.9E-19 2.7E-23 188.8 0.8 156 189-359 11-205 (353)
97 3syl_A Protein CBBX; photosynt 99.7 4.4E-17 1.5E-21 173.0 13.7 211 171-432 31-264 (309)
98 1g41_A Heat shock protein HSLU 99.7 3.8E-18 1.3E-22 187.5 5.0 136 523-670 49-188 (444)
99 3cmw_A Protein RECA, recombina 99.7 8E-17 2.7E-21 200.4 17.0 165 165-355 1014-1218(1706)
100 2onk_A Molybdate/tungstate ABC 99.7 2.7E-18 9.4E-23 175.2 3.1 149 196-359 14-191 (240)
101 3syl_A Protein CBBX; photosynt 99.7 4.8E-17 1.6E-21 172.7 11.4 154 524-691 67-232 (309)
102 2qi9_C Vitamin B12 import ATP- 99.7 4E-18 1.4E-22 174.9 2.6 148 195-359 14-197 (249)
103 2cbz_A Multidrug resistance-as 99.7 3E-17 1E-21 167.4 6.4 152 194-359 18-193 (237)
104 1mv5_A LMRA, multidrug resista 99.7 3.9E-18 1.3E-22 174.8 -1.0 154 188-358 8-201 (243)
105 3nh6_A ATP-binding cassette SU 99.7 1.1E-17 3.8E-22 176.2 2.0 150 193-359 66-253 (306)
106 2ghi_A Transport protein; mult 99.7 4.1E-17 1.4E-21 168.7 5.9 147 195-359 34-218 (260)
107 3hws_A ATP-dependent CLP prote 99.6 7.2E-16 2.5E-20 167.7 13.7 148 523-672 50-267 (363)
108 3gd7_A Fusion complex of cysti 99.6 2.7E-17 9.2E-22 178.7 2.0 148 192-358 32-217 (390)
109 3m6a_A ATP-dependent protease 99.6 1.6E-16 5.4E-21 181.5 8.1 138 523-674 107-266 (543)
110 2pze_A Cystic fibrosis transme 99.6 3.4E-17 1.2E-21 166.2 2.3 148 193-358 20-193 (229)
111 1d2n_A N-ethylmaleimide-sensit 99.6 6.6E-16 2.3E-20 161.0 10.5 147 521-672 61-210 (272)
112 1ofh_A ATP-dependent HSL prote 99.6 1.5E-15 5.1E-20 160.9 12.9 147 523-673 49-214 (310)
113 2bbs_A Cystic fibrosis transme 99.6 2.1E-16 7E-21 165.6 2.2 146 194-358 51-222 (290)
114 3ozx_A RNAse L inhibitor; ATP 99.6 5.2E-16 1.8E-20 176.1 5.6 150 198-362 285-453 (538)
115 3b5x_A Lipid A export ATP-bind 99.6 6.8E-16 2.3E-20 178.1 5.4 149 194-359 356-543 (582)
116 1yqt_A RNAse L inhibitor; ATP- 99.6 9.8E-16 3.4E-20 174.3 5.5 151 197-362 302-469 (538)
117 3bk7_A ABC transporter ATP-bin 99.6 1E-15 3.4E-20 176.1 5.6 149 197-360 372-537 (607)
118 3b60_A Lipid A export ATP-bind 99.6 7.7E-16 2.6E-20 177.6 4.7 149 194-359 356-543 (582)
119 3qf4_B Uncharacterized ABC tra 99.6 1.1E-15 3.7E-20 176.7 4.1 149 194-359 368-554 (598)
120 4a82_A Cystic fibrosis transme 99.5 1.3E-15 4.3E-20 175.6 4.2 150 193-359 353-540 (578)
121 3uk6_A RUVB-like 2; hexameric 99.5 5.5E-14 1.9E-18 152.8 15.2 188 521-729 67-328 (368)
122 1d2n_A N-ethylmaleimide-sensit 99.5 3.5E-14 1.2E-18 147.9 12.5 207 171-426 33-245 (272)
123 3j16_B RLI1P; ribosome recycli 99.5 2.3E-15 8E-20 172.8 3.7 150 196-360 362-533 (608)
124 1jbk_A CLPB protein; beta barr 99.5 3.3E-14 1.1E-18 138.6 11.5 135 523-670 42-194 (195)
125 1ofh_A ATP-dependent HSL prote 99.5 4.7E-14 1.6E-18 149.3 13.2 177 171-385 15-210 (310)
126 3qf4_A ABC transporter, ATP-bi 99.5 5.8E-15 2E-19 170.2 6.4 151 192-359 354-542 (587)
127 3uk6_A RUVB-like 2; hexameric 99.5 9.7E-14 3.3E-18 150.9 15.5 254 165-450 38-330 (368)
128 2yl4_A ATP-binding cassette SU 99.5 2E-15 6.8E-20 174.7 1.7 147 195-358 358-545 (595)
129 3hws_A ATP-dependent CLP prote 99.5 6.7E-14 2.3E-18 152.1 13.7 179 172-386 16-265 (363)
130 3pfi_A Holliday junction ATP-d 99.5 3.8E-13 1.3E-17 144.5 18.5 214 168-449 26-253 (338)
131 3pfi_A Holliday junction ATP-d 99.5 2.5E-13 8.5E-18 146.0 16.2 183 523-729 54-252 (338)
132 1tf7_A KAIC; homohexamer, hexa 99.5 3E-13 1E-17 154.1 16.8 153 193-360 24-190 (525)
133 3te6_A Regulatory protein SIR3 99.5 8.3E-14 2.8E-18 147.0 9.7 139 522-677 43-214 (318)
134 2v1u_A Cell division control p 99.5 4.9E-13 1.7E-17 145.8 15.6 199 522-731 42-276 (387)
135 1um8_A ATP-dependent CLP prote 99.5 2.5E-13 8.7E-18 148.3 13.2 148 523-672 71-284 (376)
136 2iw3_A Elongation factor 3A; a 99.5 1.4E-14 4.8E-19 172.3 3.0 68 274-360 896-963 (986)
137 2v1u_A Cell division control p 99.4 4.9E-12 1.7E-16 137.8 20.7 240 170-450 18-276 (387)
138 1hqc_A RUVB; extended AAA-ATPa 99.4 1.8E-12 6.2E-17 138.2 16.7 150 523-694 37-199 (324)
139 1jbk_A CLPB protein; beta barr 99.4 3.1E-13 1.1E-17 131.7 9.8 157 168-385 19-193 (195)
140 2p65_A Hypothetical protein PF 99.4 2.8E-13 9.6E-18 131.6 9.2 128 523-662 42-187 (187)
141 4akg_A Glutathione S-transfera 99.4 3.5E-12 1.2E-16 165.7 22.0 69 521-593 1606-1677(2695)
142 4fcw_A Chaperone protein CLPB; 99.4 9.9E-13 3.4E-17 139.3 13.2 138 525-677 48-232 (311)
143 1l8q_A Chromosomal replication 99.4 2.3E-13 7.8E-18 145.5 8.2 154 524-695 37-198 (324)
144 1hqc_A RUVB; extended AAA-ATPa 99.4 4.1E-12 1.4E-16 135.4 17.6 215 168-449 9-237 (324)
145 2z4s_A Chromosomal replication 99.4 3.1E-13 1.1E-17 150.3 8.8 190 524-730 130-331 (440)
146 1qvr_A CLPB protein; coiled co 99.4 9.1E-13 3.1E-17 158.7 12.2 143 522-677 189-348 (854)
147 2z4s_A Chromosomal replication 99.4 6.3E-12 2.1E-16 139.8 17.9 192 205-450 130-332 (440)
148 1r6b_X CLPA protein; AAA+, N-t 99.4 1.7E-12 5.7E-17 154.8 14.1 146 519-676 202-364 (758)
149 4gp7_A Metallophosphoesterase; 99.4 8.3E-14 2.9E-18 134.6 2.2 132 200-359 2-163 (171)
150 3pxg_A Negative regulator of g 99.4 4.7E-13 1.6E-17 150.2 8.5 141 522-690 199-356 (468)
151 2qby_B CDC6 homolog 3, cell di 99.4 3.1E-12 1.1E-16 139.6 14.7 190 523-732 44-271 (384)
152 3cmu_A Protein RECA, recombina 99.4 9.5E-12 3.2E-16 156.7 20.7 131 507-638 1407-1562(2050)
153 3g5u_A MCG1178, multidrug resi 99.4 1.7E-13 5.7E-18 171.0 4.5 149 194-359 403-589 (1284)
154 3pxg_A Negative regulator of g 99.4 1.2E-12 4E-17 147.0 10.6 184 168-430 177-385 (468)
155 1ye8_A Protein THEP1, hypothet 99.4 2.5E-13 8.6E-18 132.0 4.4 138 208-364 3-152 (178)
156 3u61_B DNA polymerase accessor 99.4 7.2E-13 2.5E-17 141.5 8.4 146 168-385 23-173 (324)
157 3pvs_A Replication-associated 99.4 2.8E-12 9.7E-17 142.5 13.4 178 525-730 51-243 (447)
158 2r44_A Uncharacterized protein 99.4 4.2E-12 1.4E-16 136.0 14.2 134 525-676 47-200 (331)
159 2chg_A Replication factor C sm 99.4 1.5E-11 5.1E-16 122.7 17.2 174 525-728 39-223 (226)
160 3ux8_A Excinuclease ABC, A sub 99.4 2.3E-13 8E-18 159.6 4.6 79 264-358 527-609 (670)
161 1um8_A ATP-dependent CLP prote 99.4 4.3E-12 1.5E-16 138.5 14.3 130 171-335 21-176 (376)
162 3g5u_A MCG1178, multidrug resi 99.4 2.9E-13 9.8E-18 168.9 5.5 148 195-359 1047-1234(1284)
163 3cmu_A Protein RECA, recombina 99.3 2.7E-13 9.3E-18 170.5 4.0 140 503-642 708-872 (2050)
164 3pxi_A Negative regulator of g 99.3 1.5E-12 5.1E-17 155.1 9.6 140 521-688 198-354 (758)
165 2p65_A Hypothetical protein PF 99.3 2.6E-12 8.7E-17 124.7 9.6 150 169-378 20-187 (187)
166 4f4c_A Multidrug resistance pr 99.3 6.5E-13 2.2E-17 166.1 6.6 148 195-359 1093-1280(1321)
167 1g8p_A Magnesium-chelatase 38 99.3 1.3E-11 4.4E-16 133.0 15.9 254 163-452 16-324 (350)
168 4f4c_A Multidrug resistance pr 99.3 4.8E-13 1.6E-17 167.3 5.2 151 193-360 430-618 (1321)
169 1l8q_A Chromosomal replication 99.3 2E-11 6.7E-16 130.4 16.9 198 166-429 6-214 (324)
170 2chg_A Replication factor C sm 99.3 3.1E-11 1.1E-15 120.3 17.0 200 167-447 13-223 (226)
171 3bos_A Putative DNA replicatio 99.3 2.6E-12 9E-17 130.2 8.3 180 523-728 51-240 (242)
172 2qby_A CDC6 homolog 1, cell di 99.3 2E-11 7E-16 132.7 15.9 197 523-732 44-273 (386)
173 2qby_A CDC6 homolog 1, cell di 99.3 3.5E-11 1.2E-15 130.9 17.2 239 169-450 18-272 (386)
174 3u61_B DNA polymerase accessor 99.3 9E-12 3.1E-16 133.0 12.3 146 524-694 48-204 (324)
175 1g8p_A Magnesium-chelatase 38 99.3 1.4E-11 4.6E-16 132.8 13.8 194 525-731 46-322 (350)
176 1njg_A DNA polymerase III subu 99.3 2.4E-11 8.3E-16 122.7 14.8 175 525-728 46-248 (250)
177 4aby_A DNA repair protein RECN 99.3 2.3E-12 7.9E-17 142.5 6.8 67 276-359 291-360 (415)
178 1njg_A DNA polymerase III subu 99.3 4.8E-11 1.7E-15 120.4 15.8 222 168-446 20-247 (250)
179 1fnn_A CDC6P, cell division co 99.3 6E-11 2.1E-15 129.4 17.7 239 170-450 16-274 (389)
180 2qby_B CDC6 homolog 3, cell di 99.3 6.1E-11 2.1E-15 129.3 17.4 228 171-450 20-270 (384)
181 3pvs_A Replication-associated 99.3 1.7E-11 5.9E-16 136.2 12.9 205 168-449 23-243 (447)
182 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 7.2E-12 2.5E-16 140.5 9.4 138 524-675 41-197 (500)
183 1sxj_A Activator 1 95 kDa subu 99.2 1.7E-11 5.7E-16 139.4 11.1 183 523-729 76-272 (516)
184 4fcw_A Chaperone protein CLPB; 99.2 3.6E-11 1.2E-15 127.2 12.7 215 171-430 17-278 (311)
185 3bos_A Putative DNA replicatio 99.2 1.4E-10 5E-15 117.3 16.6 205 167-447 24-240 (242)
186 1fnn_A CDC6P, cell division co 99.2 5.6E-11 1.9E-15 129.7 14.4 189 526-730 46-273 (389)
187 1sxj_E Activator 1 40 kDa subu 99.2 9.9E-11 3.4E-15 126.3 16.1 176 167-385 10-201 (354)
188 2r44_A Uncharacterized protein 99.2 1.6E-10 5.4E-15 123.7 16.7 217 170-451 26-298 (331)
189 1sxj_A Activator 1 95 kDa subu 99.2 2.6E-11 9E-16 137.7 11.2 231 168-448 36-272 (516)
190 1in4_A RUVB, holliday junction 99.2 3.5E-10 1.2E-14 121.3 18.4 215 169-450 23-250 (334)
191 3b85_A Phosphate starvation-in 99.2 8E-13 2.7E-17 131.7 -2.2 127 208-359 25-162 (208)
192 3te6_A Regulatory protein SIR3 99.2 3.6E-11 1.2E-15 126.8 10.0 170 173-385 22-206 (318)
193 1in4_A RUVB, holliday junction 99.2 3.6E-10 1.2E-14 121.2 17.3 184 523-729 50-248 (334)
194 2chq_A Replication factor C sm 99.2 1.4E-10 4.8E-15 122.8 13.1 145 526-693 40-191 (319)
195 2vf7_A UVRA2, excinuclease ABC 99.2 7.4E-12 2.5E-16 147.7 3.4 81 262-358 712-796 (842)
196 1sxj_D Activator 1 41 kDa subu 99.2 1.5E-10 5E-15 124.8 12.7 143 525-694 59-223 (353)
197 1sxj_D Activator 1 41 kDa subu 99.1 3.6E-10 1.2E-14 121.7 15.0 220 168-447 34-260 (353)
198 2npi_A Protein CLP1; CLP1-PCF1 99.1 6.5E-12 2.2E-16 139.7 1.1 136 199-356 130-299 (460)
199 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 2.2E-10 7.4E-15 128.5 13.2 210 173-444 24-280 (500)
200 3pih_A Uvrabc system protein A 99.1 2E-11 6.9E-16 145.2 5.1 78 274-374 800-880 (916)
201 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 5.6E-11 1.9E-15 128.8 7.9 68 274-357 274-347 (365)
202 2r6f_A Excinuclease ABC subuni 99.1 1.8E-11 6.2E-16 144.6 3.9 89 263-374 828-920 (972)
203 1sxj_B Activator 1 37 kDa subu 99.1 4.1E-10 1.4E-14 119.5 13.8 173 526-728 44-228 (323)
204 2ygr_A Uvrabc system protein A 99.1 3.7E-11 1.3E-15 142.5 6.1 79 264-358 847-929 (993)
205 3ec2_A DNA replication protein 99.1 1.7E-10 5.7E-15 112.1 9.7 108 205-357 38-145 (180)
206 1jr3_A DNA polymerase III subu 99.1 5.9E-10 2E-14 120.9 14.2 174 525-727 39-240 (373)
207 1a5t_A Delta prime, HOLB; zinc 99.1 9.1E-10 3.1E-14 118.0 14.1 129 524-674 24-180 (334)
208 3f9v_A Minichromosome maintena 99.1 7.4E-11 2.5E-15 135.8 5.8 137 522-675 325-491 (595)
209 1iqp_A RFCS; clamp loader, ext 99.1 1.2E-09 4E-14 116.2 14.6 146 526-694 48-200 (327)
210 2wg5_A General control protein 99.1 3.8E-10 1.3E-14 99.2 8.7 101 30-163 8-108 (109)
211 3f9v_A Minichromosome maintena 99.0 1.4E-10 4.8E-15 133.5 6.5 168 172-385 296-485 (595)
212 3qkt_A DNA double-strand break 99.0 7.5E-10 2.6E-14 118.8 11.8 70 274-357 243-316 (339)
213 3pih_A Uvrabc system protein A 99.0 9.6E-10 3.3E-14 130.9 13.1 90 262-374 446-538 (916)
214 3co5_A Putative two-component 99.0 1.5E-10 5.1E-15 108.1 4.9 90 524-639 27-116 (143)
215 4akg_A Glutathione S-transfera 99.0 1.2E-09 4E-14 142.4 14.5 190 521-734 1264-1488(2695)
216 1jr3_A DNA polymerase III subu 99.0 2.3E-09 7.8E-14 116.3 14.7 222 168-446 13-240 (373)
217 2bjv_A PSP operon transcriptio 99.0 7.8E-10 2.7E-14 114.3 10.3 137 524-676 29-196 (265)
218 1sxj_E Activator 1 40 kDa subu 99.0 1.8E-09 6E-14 116.4 13.5 126 527-675 39-207 (354)
219 3n70_A Transport activator; si 99.0 2.6E-10 8.9E-15 106.7 6.0 91 523-639 23-116 (145)
220 2chq_A Replication factor C sm 99.0 1.3E-09 4.3E-14 115.4 12.1 150 167-385 13-169 (319)
221 1ojl_A Transcriptional regulat 99.0 3.2E-10 1.1E-14 119.8 7.1 156 523-695 24-216 (304)
222 1e69_A Chromosome segregation 99.0 1.2E-09 4E-14 116.5 11.1 68 274-358 214-285 (322)
223 3thx_B DNA mismatch repair pro 99.0 4.5E-10 1.5E-14 133.9 8.5 136 194-359 660-800 (918)
224 1sxj_B Activator 1 37 kDa subu 99.0 4.7E-09 1.6E-13 111.2 15.7 145 168-385 18-174 (323)
225 1iqp_A RFCS; clamp loader, ext 99.0 7.6E-09 2.6E-13 109.8 16.3 148 168-385 22-177 (327)
226 1sxj_C Activator 1 40 kDa subu 99.0 2E-09 7E-14 115.5 11.6 140 526-692 48-198 (340)
227 3k1j_A LON protease, ATP-depen 99.0 4.5E-10 1.6E-14 130.0 6.9 140 297-449 199-374 (604)
228 2gno_A DNA polymerase III, gam 98.9 2.1E-09 7.3E-14 113.3 11.1 124 525-674 19-152 (305)
229 2ygr_A Uvrabc system protein A 98.9 1.2E-08 4E-13 121.3 17.3 96 256-375 498-596 (993)
230 2pt7_A CAG-ALFA; ATPase, prote 98.9 4.8E-10 1.6E-14 119.6 4.8 114 195-356 159-276 (330)
231 1sxj_C Activator 1 40 kDa subu 98.9 5.7E-09 1.9E-13 112.0 12.1 150 168-385 22-177 (340)
232 3ec2_A DNA replication protein 98.9 1.8E-09 6.2E-14 104.7 7.1 109 518-641 32-145 (180)
233 3thx_A DNA mismatch repair pro 98.9 1.7E-09 5.8E-14 129.4 7.9 128 196-358 651-788 (934)
234 2krk_A 26S protease regulatory 98.8 5.5E-09 1.9E-13 88.1 7.8 78 373-453 7-84 (86)
235 2eyu_A Twitching motility prot 98.8 3.5E-09 1.2E-13 109.1 8.0 117 195-356 15-134 (261)
236 3co5_A Putative two-component 98.8 3E-09 1E-13 99.2 6.6 112 172-355 5-116 (143)
237 3n70_A Transport activator; si 98.8 8.8E-09 3E-13 96.2 9.8 112 172-355 2-116 (145)
238 3kw6_A 26S protease regulatory 98.8 7.5E-09 2.6E-13 85.8 8.0 75 375-452 1-75 (78)
239 2bjv_A PSP operon transcriptio 98.8 7.3E-09 2.5E-13 107.0 9.3 60 168-238 3-65 (265)
240 1tq4_A IIGP1, interferon-induc 98.8 1.1E-10 3.9E-15 127.5 -4.9 136 208-357 72-237 (413)
241 1tf7_A KAIC; homohexamer, hexa 98.8 4.9E-09 1.7E-13 119.3 8.3 135 202-355 276-417 (525)
242 2ehv_A Hypothetical protein PH 98.8 4.5E-09 1.5E-13 107.2 6.8 61 288-358 124-185 (251)
243 3b9q_A Chloroplast SRP recepto 98.8 1.3E-08 4.5E-13 107.0 9.9 152 177-353 70-255 (302)
244 2kjq_A DNAA-related protein; s 98.8 7.2E-09 2.4E-13 97.4 7.0 26 206-231 37-62 (149)
245 2o8b_B DNA mismatch repair pro 98.8 5.2E-09 1.8E-13 126.8 7.4 142 194-366 769-923 (1022)
246 1cr0_A DNA primase/helicase; R 98.8 1.2E-08 4E-13 107.3 9.1 149 195-355 23-197 (296)
247 1w5s_A Origin recognition comp 98.8 3.3E-08 1.1E-12 108.5 12.6 144 524-675 50-229 (412)
248 1ojl_A Transcriptional regulat 98.7 1.1E-08 3.8E-13 108.0 8.0 56 172-238 3-61 (304)
249 1znw_A Guanylate kinase, GMP k 98.7 3.6E-10 1.2E-14 112.4 -3.5 52 295-359 137-192 (207)
250 1w5s_A Origin recognition comp 98.7 1.3E-07 4.3E-12 103.8 16.5 245 170-448 21-291 (412)
251 2w0m_A SSO2452; RECA, SSPF, un 98.7 1.4E-08 5E-13 102.0 8.2 141 203-356 19-169 (235)
252 1a5t_A Delta prime, HOLB; zinc 98.7 1.4E-07 4.8E-12 100.9 15.4 165 176-385 7-175 (334)
253 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.7E-09 1.6E-13 109.8 3.5 122 520-646 119-242 (331)
254 1nlf_A Regulatory protein REPA 98.7 5.4E-09 1.9E-13 108.9 3.9 142 204-358 27-184 (279)
255 3k1j_A LON protease, ATP-depen 98.7 1.5E-08 5E-13 117.3 7.8 134 583-729 201-373 (604)
256 1svm_A Large T antigen; AAA+ f 98.7 9.8E-09 3.3E-13 111.0 5.9 120 519-660 164-284 (377)
257 2og2_A Putative signal recogni 98.7 4.8E-08 1.7E-12 104.8 11.1 130 199-353 149-312 (359)
258 3jvv_A Twitching mobility prot 98.7 1.7E-08 5.9E-13 108.4 7.3 111 205-358 122-234 (356)
259 1ewq_A DNA mismatch repair pro 98.7 1.7E-08 5.8E-13 118.6 6.8 128 196-359 568-702 (765)
260 1svm_A Large T antigen; AAA+ f 98.6 1.2E-08 4.2E-13 110.2 4.3 143 176-376 131-284 (377)
261 4a74_A DNA repair and recombin 98.6 7.4E-08 2.5E-12 96.7 9.5 29 203-231 21-51 (231)
262 3vlf_B 26S protease regulatory 98.6 6.2E-08 2.1E-12 82.1 7.0 74 378-454 2-75 (88)
263 2kjq_A DNAA-related protein; s 98.6 6.8E-08 2.3E-12 90.6 8.0 104 523-657 35-144 (149)
264 2r2a_A Uncharacterized protein 98.6 4.1E-08 1.4E-12 96.7 6.7 127 526-664 7-156 (199)
265 1wb9_A DNA mismatch repair pro 98.6 3.8E-08 1.3E-12 116.3 7.6 135 195-359 596-734 (800)
266 3h43_A Proteasome-activating n 98.6 1.2E-07 4E-12 79.1 8.4 76 44-152 3-78 (85)
267 1pzn_A RAD51, DNA repair and r 98.6 1.3E-07 4.6E-12 101.5 10.5 41 189-229 113-155 (349)
268 2gno_A DNA polymerase III, gam 98.6 2.3E-07 7.8E-12 97.7 11.2 137 175-385 1-147 (305)
269 2i3b_A HCR-ntpase, human cance 98.5 8.7E-09 3E-13 100.8 -0.2 23 208-230 4-26 (189)
270 3vkg_A Dynein heavy chain, cyt 98.5 2E-06 6.9E-11 113.1 20.8 68 522-593 1644-1714(3245)
271 1ye8_A Protein THEP1, hypothet 98.5 6.6E-07 2.3E-11 86.5 12.0 124 526-666 2-168 (178)
272 3aji_B S6C, proteasome (prosom 98.5 1.9E-07 6.4E-12 78.3 6.8 74 378-454 2-75 (83)
273 2obl_A ESCN; ATPase, hydrolase 98.5 1.4E-07 4.8E-12 101.1 7.2 45 193-238 58-104 (347)
274 2jeo_A Uridine-cytidine kinase 98.5 3.5E-08 1.2E-12 100.7 1.7 40 192-231 10-51 (245)
275 2vhj_A Ntpase P4, P4; non- hyd 98.4 8.8E-08 3E-12 100.1 4.4 113 208-362 126-242 (331)
276 3aez_A Pantothenate kinase; tr 98.4 2.2E-08 7.7E-13 105.7 -0.1 102 204-309 87-204 (312)
277 2cvh_A DNA repair and recombin 98.4 2.8E-07 9.5E-12 91.8 7.8 25 203-227 16-42 (220)
278 2dpy_A FLII, flagellum-specifi 98.4 7.2E-07 2.5E-11 98.5 11.2 51 187-238 137-190 (438)
279 1f2t_B RAD50 ABC-ATPase; DNA d 98.4 4.2E-07 1.4E-11 84.9 7.9 69 274-356 52-124 (148)
280 3sop_A Neuronal-specific septi 98.4 4E-08 1.4E-12 101.7 0.4 128 208-359 5-154 (270)
281 2w58_A DNAI, primosome compone 98.4 2.4E-07 8.2E-12 91.2 5.5 69 525-595 55-127 (202)
282 2ewv_A Twitching motility prot 98.4 3.4E-07 1.2E-11 99.2 6.7 42 195-236 126-168 (372)
283 1s96_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 91.9 5.4 29 203-231 12-42 (219)
284 3vkg_A Dynein heavy chain, cyt 98.3 1.1E-05 3.8E-10 106.3 20.7 125 205-385 604-748 (3245)
285 1n0w_A DNA repair protein RAD5 98.3 9.2E-07 3.1E-11 89.4 8.1 25 204-228 21-47 (243)
286 2dzn_B 26S protease regulatory 98.3 4.7E-07 1.6E-11 75.6 3.9 68 381-451 2-69 (82)
287 3gfo_A Cobalt import ATP-bindi 98.3 1.8E-06 6.1E-11 89.3 9.1 112 519-643 29-208 (275)
288 2v9p_A Replication protein E1; 98.3 4.7E-08 1.6E-12 102.4 -3.1 95 194-304 113-220 (305)
289 2qgz_A Helicase loader, putati 98.2 6E-07 2E-11 94.8 4.8 70 524-595 152-226 (308)
290 1lw7_A Transcriptional regulat 98.2 4E-07 1.4E-11 98.6 2.5 37 197-233 158-198 (365)
291 1htw_A HI0065; nucleotide-bind 98.2 3.8E-07 1.3E-11 86.3 1.8 46 192-238 18-65 (158)
292 3ljc_A ATP-dependent protease 98.2 1.6E-07 5.5E-12 96.1 -1.3 64 16-82 185-251 (252)
293 1rj9_A FTSY, signal recognitio 98.2 1.6E-06 5.3E-11 91.2 6.1 30 208-237 105-134 (304)
294 1tue_A Replication protein E1; 98.1 1.9E-06 6.4E-11 84.1 5.9 32 521-552 55-86 (212)
295 2w58_A DNAI, primosome compone 98.1 9.2E-07 3.1E-11 87.0 3.8 26 206-231 55-80 (202)
296 2pcj_A ABC transporter, lipopr 98.1 3.9E-06 1.3E-10 84.2 8.0 33 519-551 25-57 (224)
297 3szr_A Interferon-induced GTP- 98.1 2.9E-06 9.9E-11 97.9 7.8 56 298-359 145-200 (608)
298 4g1u_C Hemin import ATP-bindin 98.1 4.4E-06 1.5E-10 86.1 8.1 110 519-641 32-210 (266)
299 1vpl_A ABC transporter, ATP-bi 98.1 7.1E-06 2.4E-10 84.0 9.5 33 519-551 36-68 (256)
300 1ny5_A Transcriptional regulat 98.1 5E-06 1.7E-10 90.6 8.7 153 525-694 161-350 (387)
301 1vma_A Cell division protein F 98.1 2.6E-05 8.7E-10 81.9 13.2 94 201-307 98-194 (306)
302 2ehv_A Hypothetical protein PH 98.1 1.2E-05 4.1E-10 81.5 10.3 130 520-660 26-207 (251)
303 1sgw_A Putative ABC transporte 98.1 5.5E-06 1.9E-10 82.4 7.6 33 519-551 30-62 (214)
304 2olj_A Amino acid ABC transpor 98.1 8.2E-06 2.8E-10 83.8 8.9 33 519-551 45-77 (263)
305 3tif_A Uncharacterized ABC tra 98.1 1.2E-05 3.9E-10 81.4 9.8 33 519-551 26-58 (235)
306 3tui_C Methionine import ATP-b 98.0 8.4E-06 2.9E-10 87.2 8.9 110 519-641 49-226 (366)
307 2qnr_A Septin-2, protein NEDD5 98.0 2E-07 6.9E-12 98.1 -3.8 42 187-232 4-46 (301)
308 2fna_A Conserved hypothetical 98.0 2.8E-05 9.4E-10 83.0 13.0 136 525-675 31-223 (357)
309 2zr9_A Protein RECA, recombina 98.0 5.4E-06 1.8E-10 88.9 7.2 23 208-230 64-86 (349)
310 2r2a_A Uncharacterized protein 98.0 5E-06 1.7E-10 81.7 6.4 69 298-378 86-154 (199)
311 3lda_A DNA repair protein RAD5 98.0 1.2E-05 4.2E-10 87.4 9.7 66 290-358 264-331 (400)
312 2qen_A Walker-type ATPase; unk 98.0 0.00011 3.9E-09 77.9 16.8 137 525-675 32-217 (350)
313 3rlf_A Maltose/maltodextrin im 98.0 1.8E-05 6.1E-10 85.2 10.3 121 519-652 24-212 (381)
314 2cbz_A Multidrug resistance-as 98.0 1.4E-05 4.8E-10 80.8 9.0 112 519-642 26-192 (237)
315 2onk_A Molybdate/tungstate ABC 98.0 2.4E-05 8.1E-10 79.3 10.7 32 519-551 20-51 (240)
316 2nq2_C Hypothetical ABC transp 98.0 1.6E-05 5.6E-10 81.1 9.4 110 519-641 26-191 (253)
317 2gza_A Type IV secretion syste 98.0 3E-06 1E-10 91.4 3.7 43 196-238 164-208 (361)
318 3fvq_A Fe(3+) IONS import ATP- 98.0 1.9E-05 6.5E-10 84.4 9.7 33 519-551 25-57 (359)
319 2ff7_A Alpha-hemolysin translo 98.0 1.4E-05 4.9E-10 81.3 8.3 33 519-551 30-62 (247)
320 2qgz_A Helicase loader, putati 97.9 2.1E-06 7.2E-11 90.5 2.1 26 205-230 152-177 (308)
321 2ihy_A ABC transporter, ATP-bi 97.9 1.8E-05 6.1E-10 82.1 9.0 33 519-551 42-74 (279)
322 1ji0_A ABC transporter; ATP bi 97.9 2.7E-05 9.3E-10 78.9 10.2 33 519-551 27-59 (240)
323 1z47_A CYSA, putative ABC-tran 97.9 2.2E-05 7.5E-10 83.9 9.9 33 519-551 36-68 (355)
324 2yyz_A Sugar ABC transporter, 97.9 2.8E-05 9.4E-10 83.3 10.6 33 519-551 24-56 (359)
325 3m9b_A Proteasome-associated A 97.9 4.9E-05 1.7E-09 75.0 11.4 106 17-157 56-161 (251)
326 1g29_1 MALK, maltose transport 97.9 2.1E-05 7.3E-10 84.7 9.5 33 519-551 24-56 (372)
327 1b0u_A Histidine permease; ABC 97.9 2E-05 6.9E-10 80.9 9.0 33 519-551 27-59 (262)
328 3asz_A Uridine kinase; cytidin 97.9 1.6E-07 5.6E-12 93.1 -6.6 24 208-231 9-32 (211)
329 2it1_A 362AA long hypothetical 97.9 3E-05 1E-09 83.2 10.5 33 519-551 24-56 (362)
330 2ghi_A Transport protein; mult 97.9 2.4E-05 8.3E-10 80.2 9.4 31 519-549 41-71 (260)
331 4a74_A DNA repair and recombin 97.9 3.2E-05 1.1E-09 77.2 9.8 30 520-549 21-50 (231)
332 1ls1_A Signal recognition part 97.9 8E-05 2.7E-09 77.8 12.9 130 182-337 77-209 (295)
333 2pjz_A Hypothetical protein ST 97.9 4.2E-05 1.4E-09 78.5 10.6 105 519-642 26-188 (263)
334 2yz2_A Putative ABC transporte 97.9 5.3E-05 1.8E-09 78.0 11.4 32 519-550 28-59 (266)
335 2vf7_A UVRA2, excinuclease ABC 97.9 8.9E-06 3E-10 96.2 6.0 96 256-375 356-454 (842)
336 2d2e_A SUFC protein; ABC-ATPas 97.9 3.8E-05 1.3E-09 78.3 10.0 53 576-642 154-206 (250)
337 2r6f_A Excinuclease ABC subuni 97.9 6.1E-06 2.1E-10 97.9 4.5 96 256-375 481-579 (972)
338 2cvh_A DNA repair and recombin 97.9 0.00016 5.4E-09 71.5 14.2 38 520-557 16-53 (220)
339 2ixe_A Antigen peptide transpo 97.9 4.5E-05 1.6E-09 78.7 10.5 33 519-551 40-72 (271)
340 3dzd_A Transcriptional regulat 97.9 5.1E-05 1.8E-09 81.9 11.3 154 525-695 153-342 (368)
341 2eyu_A Twitching motility prot 97.9 2.1E-05 7.1E-10 80.8 7.7 79 515-593 16-108 (261)
342 1oxx_K GLCV, glucose, ABC tran 97.9 2.2E-05 7.5E-10 84.1 8.1 33 519-551 26-58 (353)
343 2fna_A Conserved hypothetical 97.9 0.00015 5.2E-09 77.1 14.7 53 169-238 11-63 (357)
344 3d31_A Sulfate/molybdate ABC t 97.9 2E-05 6.9E-10 84.1 7.6 121 519-652 21-206 (348)
345 2yhs_A FTSY, cell division pro 97.9 7.4E-05 2.5E-09 82.7 12.3 41 198-238 284-326 (503)
346 4gp7_A Metallophosphoesterase; 97.8 6.4E-06 2.2E-10 78.9 3.3 122 520-642 5-162 (171)
347 3nh6_A ATP-binding cassette SU 97.8 3.5E-05 1.2E-09 80.8 9.1 33 519-551 75-107 (306)
348 1g6h_A High-affinity branched- 97.8 6.4E-05 2.2E-09 77.0 10.9 55 574-642 162-216 (257)
349 2qi9_C Vitamin B12 import ATP- 97.8 3.3E-05 1.1E-09 78.6 8.5 33 519-551 21-53 (249)
350 1v43_A Sugar-binding transport 97.8 1.9E-05 6.5E-10 85.0 7.0 33 519-551 32-64 (372)
351 2w0m_A SSO2452; RECA, SSPF, un 97.8 5.5E-05 1.9E-09 75.4 10.1 29 520-548 19-47 (235)
352 3hr8_A Protein RECA; alpha and 97.8 3.4E-05 1.2E-09 82.5 8.5 29 204-232 58-88 (356)
353 2qag_C Septin-7; cell cycle, c 97.8 2E-06 6.7E-11 94.3 -1.6 36 191-230 21-56 (418)
354 1n0w_A DNA repair protein RAD5 97.8 5E-05 1.7E-09 76.4 9.0 87 512-598 10-134 (243)
355 1z6g_A Guanylate kinase; struc 97.7 1.1E-05 3.8E-10 80.5 3.2 36 194-229 10-47 (218)
356 3gd7_A Fusion complex of cysti 97.7 5.6E-05 1.9E-09 81.9 9.0 107 519-641 42-216 (390)
357 2dr3_A UPF0273 protein PH0284; 97.7 6.6E-05 2.3E-09 75.7 8.7 27 203-229 19-47 (247)
358 3jvv_A Twitching mobility prot 97.7 4.2E-05 1.4E-09 82.0 7.4 108 514-642 113-234 (356)
359 3hr8_A Protein RECA; alpha and 97.7 8.3E-05 2.8E-09 79.5 9.7 131 508-638 42-197 (356)
360 2zr9_A Protein RECA, recombina 97.7 3.1E-05 1.1E-09 82.9 6.4 78 520-597 57-153 (349)
361 1mv5_A LMRA, multidrug resista 97.7 3.8E-05 1.3E-09 78.0 6.3 31 519-549 23-53 (243)
362 3vaa_A Shikimate kinase, SK; s 97.7 1.9E-05 6.4E-10 77.5 3.8 42 194-235 12-55 (199)
363 2r6a_A DNAB helicase, replicat 97.7 4.6E-05 1.6E-09 84.8 7.2 36 196-231 192-229 (454)
364 1pui_A ENGB, probable GTP-bind 97.7 9.9E-06 3.4E-10 79.7 1.4 32 196-229 17-50 (210)
365 2pze_A Cystic fibrosis transme 97.7 8.9E-05 3.1E-09 74.5 8.4 33 519-551 29-61 (229)
366 3e70_C DPA, signal recognition 97.6 8.6E-05 3E-09 78.6 8.5 34 205-238 127-162 (328)
367 4a82_A Cystic fibrosis transme 97.6 6.3E-05 2.2E-09 86.3 8.0 119 519-659 362-549 (578)
368 2qen_A Walker-type ATPase; unk 97.6 0.0014 4.9E-08 69.3 18.0 47 169-230 10-56 (350)
369 3qf4_B Uncharacterized ABC tra 97.6 0.00012 4.1E-09 84.3 10.1 109 519-642 376-553 (598)
370 1u0j_A DNA replication protein 97.6 6.3E-05 2.1E-09 76.7 6.8 27 524-550 104-130 (267)
371 3nwj_A ATSK2; P loop, shikimat 97.6 1.4E-05 4.9E-10 81.3 1.7 44 192-235 30-78 (250)
372 2zu0_C Probable ATP-dependent 97.6 0.00014 5E-09 74.7 9.2 29 519-547 41-69 (267)
373 2i3b_A HCR-ntpase, human cance 97.6 0.00014 4.9E-09 70.7 8.6 24 525-548 2-25 (189)
374 3b5x_A Lipid A export ATP-bind 97.6 0.00012 4.1E-09 84.0 9.1 32 519-550 364-395 (582)
375 2qm8_A GTPase/ATPase; G protei 97.6 4.5E-05 1.5E-09 81.3 5.0 44 194-237 42-87 (337)
376 2oap_1 GSPE-2, type II secreti 97.6 2.3E-05 7.7E-10 88.2 2.7 46 192-237 245-292 (511)
377 3b60_A Lipid A export ATP-bind 97.6 0.00014 4.8E-09 83.5 9.3 33 519-551 364-396 (582)
378 1p9r_A General secretion pathw 97.5 3.2E-05 1.1E-09 84.7 3.6 41 196-237 158-199 (418)
379 3kta_B Chromosome segregation 97.5 0.00019 6.4E-09 68.7 8.4 66 274-356 59-128 (173)
380 1xp8_A RECA protein, recombina 97.5 0.00031 1.1E-08 75.5 11.0 131 508-638 55-210 (366)
381 1pzn_A RAD51, DNA repair and r 97.5 8.9E-05 3E-09 79.4 6.7 30 519-548 126-155 (349)
382 3io5_A Recombination and repai 97.5 8.8E-05 3E-09 77.2 6.2 61 296-356 108-173 (333)
383 2pt7_A CAG-ALFA; ATPase, prote 97.5 6.2E-05 2.1E-09 80.0 5.3 74 521-594 168-251 (330)
384 2px0_A Flagellar biosynthesis 97.5 0.00017 5.8E-09 75.3 8.5 24 208-231 108-131 (296)
385 3f8t_A Predicted ATPase involv 97.5 3.3E-05 1.1E-09 84.5 2.9 123 525-664 240-384 (506)
386 1udx_A The GTP-binding protein 97.5 1.5E-05 5.1E-10 87.2 0.2 104 198-307 148-278 (416)
387 3qf4_A ABC transporter, ATP-bi 97.5 0.0002 6.9E-09 82.2 9.6 108 519-641 364-540 (587)
388 3lda_A DNA repair protein RAD5 97.5 0.0002 7E-09 77.8 8.7 133 509-642 161-331 (400)
389 1u0j_A DNA replication protein 97.4 0.00016 5.4E-09 73.7 6.7 30 206-236 105-134 (267)
390 1zp6_A Hypothetical protein AT 97.4 6.9E-05 2.4E-09 72.6 3.7 28 204-231 6-35 (191)
391 4ad8_A DNA repair protein RECN 97.4 5.9E-05 2E-09 85.4 3.6 68 274-358 391-461 (517)
392 2bbs_A Cystic fibrosis transme 97.4 0.0004 1.4E-08 72.2 9.7 32 519-550 59-90 (290)
393 3f8t_A Predicted ATPase involv 97.4 0.0013 4.3E-08 72.1 13.7 67 300-379 301-383 (506)
394 3thx_B DNA mismatch repair pro 97.4 0.00045 1.5E-08 82.5 10.9 111 520-643 669-800 (918)
395 2ewv_A Twitching motility prot 97.4 0.00014 4.7E-09 78.7 5.9 79 515-593 127-219 (372)
396 3tr0_A Guanylate kinase, GMP k 97.4 7E-05 2.4E-09 73.3 3.3 28 203-230 3-32 (205)
397 1xp8_A RECA protein, recombina 97.4 0.0005 1.7E-08 73.8 10.1 22 208-229 77-98 (366)
398 1u94_A RECA protein, recombina 97.4 0.00029 1E-08 75.4 8.0 90 508-597 44-155 (356)
399 4eun_A Thermoresistant glucoki 97.3 8.5E-05 2.9E-09 72.8 3.4 30 202-231 24-55 (200)
400 1u94_A RECA protein, recombina 97.3 0.00024 8.3E-09 76.0 7.2 23 207-229 65-87 (356)
401 3auy_A DNA double-strand break 97.3 0.00035 1.2E-08 75.5 8.4 67 275-356 276-347 (371)
402 2z43_A DNA repair and recombin 97.3 0.00025 8.4E-09 75.2 7.1 89 509-597 90-217 (324)
403 1v5w_A DMC1, meiotic recombina 97.3 0.00035 1.2E-08 74.6 8.3 89 509-597 105-233 (343)
404 2z43_A DNA repair and recombin 97.3 0.00036 1.2E-08 73.9 8.3 26 204-229 104-131 (324)
405 1nij_A Hypothetical protein YJ 97.3 6.3E-05 2.1E-09 79.6 2.1 30 208-237 7-44 (318)
406 3lnc_A Guanylate kinase, GMP k 97.3 5.7E-05 2E-09 75.8 1.4 36 195-230 15-53 (231)
407 2yl4_A ATP-binding cassette SU 97.3 0.00039 1.3E-08 80.0 8.6 33 519-551 365-397 (595)
408 1v5w_A DMC1, meiotic recombina 97.3 0.00028 9.6E-09 75.3 6.9 41 189-229 104-146 (343)
409 1kag_A SKI, shikimate kinase I 97.3 0.00013 4.5E-09 69.3 3.8 28 206-233 5-32 (173)
410 1nlf_A Regulatory protein REPA 97.3 0.00073 2.5E-08 69.8 9.7 29 520-548 26-54 (279)
411 1odf_A YGR205W, hypothetical 3 97.3 1.9E-05 6.5E-10 82.3 -2.5 24 208-231 34-57 (290)
412 3uie_A Adenylyl-sulfate kinase 97.3 8E-05 2.8E-09 73.0 2.0 33 198-230 16-50 (200)
413 1qhx_A CPT, protein (chloramph 97.2 0.00069 2.4E-08 64.6 8.6 35 525-559 4-38 (178)
414 3kl4_A SRP54, signal recogniti 97.2 0.00093 3.2E-08 73.2 9.9 118 208-353 100-222 (433)
415 1w1w_A Structural maintenance 97.2 0.00041 1.4E-08 76.5 7.2 68 275-358 329-400 (430)
416 1sq5_A Pantothenate kinase; P- 97.2 0.00011 3.6E-09 77.4 2.3 33 205-237 78-114 (308)
417 4aby_A DNA repair protein RECN 97.2 0.00026 9E-09 77.6 5.3 59 569-642 299-359 (415)
418 3vaa_A Shikimate kinase, SK; s 97.2 0.00027 9.2E-09 69.1 4.8 37 519-555 20-56 (199)
419 3thx_A DNA mismatch repair pro 97.2 0.001 3.6E-08 79.6 10.7 25 521-545 659-683 (934)
420 1zp6_A Hypothetical protein AT 97.2 0.00023 7.9E-09 68.8 4.2 40 521-560 6-45 (191)
421 3kta_A Chromosome segregation 97.2 0.00012 4.1E-09 70.3 2.1 35 198-232 18-53 (182)
422 2j41_A Guanylate kinase; GMP, 97.1 0.0002 6.9E-09 70.1 3.6 30 204-233 3-34 (207)
423 3a00_A Guanylate kinase, GMP k 97.1 0.00021 7.3E-09 69.1 3.4 26 208-233 4-29 (186)
424 1cr0_A DNA primase/helicase; R 97.1 0.0019 6.5E-08 67.2 11.0 30 519-548 30-59 (296)
425 1y63_A LMAJ004144AAA protein; 97.1 0.00024 8.2E-09 68.6 3.7 35 200-234 3-40 (184)
426 2dr3_A UPF0273 protein PH0284; 97.1 0.0025 8.7E-08 63.8 10.9 28 520-547 19-46 (247)
427 3c8u_A Fructokinase; YP_612366 97.1 0.00027 9.1E-09 69.7 3.5 33 205-237 20-57 (208)
428 2b8t_A Thymidine kinase; deoxy 97.0 0.0018 6.1E-08 64.5 9.4 22 208-229 15-36 (223)
429 3euj_A Chromosome partition pr 97.0 0.00014 4.7E-09 80.7 1.2 44 195-238 18-62 (483)
430 1knq_A Gluconate kinase; ALFA/ 97.0 0.00037 1.3E-08 66.4 3.9 25 208-232 11-35 (175)
431 3io5_A Recombination and repai 97.0 0.0012 4E-08 68.8 7.8 118 520-638 25-171 (333)
432 2iut_A DNA translocase FTSK; n 97.0 0.0046 1.6E-07 69.5 13.1 75 585-672 345-421 (574)
433 1qhx_A CPT, protein (chloramph 97.0 0.00043 1.5E-08 66.0 4.1 31 207-237 5-35 (178)
434 1kag_A SKI, shikimate kinase I 97.0 0.00053 1.8E-08 65.0 4.7 31 524-554 4-34 (173)
435 3kw6_A 26S protease regulatory 97.0 0.0016 5.4E-08 53.3 6.8 74 659-732 1-74 (78)
436 3sfz_A APAF-1, apoptotic pepti 96.9 0.0048 1.6E-07 76.9 14.3 48 170-228 123-170 (1249)
437 2ius_A DNA translocase FTSK; n 96.9 0.0007 2.4E-08 75.6 5.9 75 298-385 295-372 (512)
438 1wb9_A DNA mismatch repair pro 96.9 0.0023 7.7E-08 75.7 10.6 27 522-548 605-631 (800)
439 2o5v_A DNA replication and rep 96.9 0.00081 2.8E-08 72.0 6.2 61 275-354 260-330 (359)
440 2i1q_A DNA repair and recombin 96.9 0.0008 2.7E-08 71.1 6.0 25 204-228 95-121 (322)
441 1lvg_A Guanylate kinase, GMP k 96.9 0.00038 1.3E-08 68.1 3.1 24 207-230 6-29 (198)
442 1gvn_B Zeta; postsegregational 96.9 0.002 7E-08 66.8 8.9 31 208-238 36-66 (287)
443 3kb2_A SPBC2 prophage-derived 96.9 0.00045 1.6E-08 65.3 3.6 28 208-235 4-31 (173)
444 1kgd_A CASK, peripheral plasma 96.9 0.00043 1.5E-08 66.5 3.4 23 208-230 8-30 (180)
445 1jr3_D DNA polymerase III, del 96.9 0.0037 1.3E-07 66.4 11.0 174 525-730 19-208 (343)
446 1tue_A Replication protein E1; 96.9 0.00036 1.2E-08 68.0 2.7 25 206-230 59-83 (212)
447 3trf_A Shikimate kinase, SK; a 96.9 0.00051 1.7E-08 66.0 3.7 31 206-236 6-36 (185)
448 2p5t_B PEZT; postsegregational 96.9 0.003 1E-07 64.1 9.6 30 208-237 35-64 (253)
449 2p5t_B PEZT; postsegregational 96.9 0.0017 5.8E-08 66.0 7.6 39 522-560 30-68 (253)
450 2rcn_A Probable GTPase ENGC; Y 96.9 0.0005 1.7E-08 73.4 3.7 85 208-295 218-327 (358)
451 3trf_A Shikimate kinase, SK; a 96.8 0.00077 2.6E-08 64.7 4.6 32 524-555 5-36 (185)
452 2qag_B Septin-6, protein NEDD5 96.8 0.00026 8.8E-09 77.2 1.3 33 197-229 30-66 (427)
453 1via_A Shikimate kinase; struc 96.8 0.00049 1.7E-08 65.6 3.2 28 207-234 6-33 (175)
454 2rhm_A Putative kinase; P-loop 96.8 0.00085 2.9E-08 64.7 4.7 33 522-554 3-35 (193)
455 1zu4_A FTSY; GTPase, signal re 96.8 0.0069 2.3E-07 63.8 12.0 40 198-237 96-137 (320)
456 3tau_A Guanylate kinase, GMP k 96.8 0.00059 2E-08 67.2 3.6 24 208-231 11-34 (208)
457 1ewq_A DNA mismatch repair pro 96.8 0.0032 1.1E-07 73.9 10.1 30 518-548 571-600 (765)
458 3t61_A Gluconokinase; PSI-biol 96.7 0.0007 2.4E-08 66.1 3.6 28 208-235 21-48 (202)
459 2rhm_A Putative kinase; P-loop 96.7 0.00075 2.6E-08 65.1 3.7 27 207-233 7-33 (193)
460 1ny5_A Transcriptional regulat 96.7 0.0073 2.5E-07 65.4 12.0 111 207-354 162-281 (387)
461 1y63_A LMAJ004144AAA protein; 96.7 0.00084 2.9E-08 64.7 4.0 32 523-554 9-41 (184)
462 2bdt_A BH3686; alpha-beta prot 96.7 0.00063 2.1E-08 65.7 3.1 22 208-229 5-26 (189)
463 1cke_A CK, MSSA, protein (cyti 96.7 0.00064 2.2E-08 67.6 3.2 27 207-233 7-33 (227)
464 3dm5_A SRP54, signal recogniti 96.7 0.0028 9.6E-08 69.4 8.5 25 208-232 103-127 (443)
465 1htw_A HI0065; nucleotide-bind 96.7 0.00085 2.9E-08 63.1 3.8 31 518-548 27-57 (158)
466 2ius_A DNA translocase FTSK; n 96.7 0.0052 1.8E-07 68.6 10.7 76 584-672 297-375 (512)
467 2i1q_A DNA repair and recombin 96.7 0.0016 5.6E-08 68.6 6.4 39 509-547 81-121 (322)
468 4a1f_A DNAB helicase, replicat 96.7 0.0058 2E-07 64.7 10.5 28 203-230 42-71 (338)
469 2o8b_B DNA mismatch repair pro 96.7 0.0054 1.9E-07 74.4 11.4 106 524-643 789-916 (1022)
470 1jjv_A Dephospho-COA kinase; P 96.7 0.00075 2.6E-08 66.1 3.2 25 208-233 5-29 (206)
471 2ffh_A Protein (FFH); SRP54, s 96.7 0.012 4.1E-07 64.2 12.9 58 178-237 73-130 (425)
472 2r8r_A Sensor protein; KDPD, P 96.7 0.00085 2.9E-08 66.5 3.4 101 205-353 3-125 (228)
473 3kb2_A SPBC2 prophage-derived 96.7 0.0012 3.9E-08 62.4 4.3 31 526-556 3-33 (173)
474 4eun_A Thermoresistant glucoki 96.7 0.0013 4.3E-08 64.3 4.7 37 522-560 27-63 (200)
475 3dzd_A Transcriptional regulat 96.6 0.0071 2.4E-07 65.0 11.0 135 172-354 130-272 (368)
476 1rz3_A Hypothetical protein rb 96.6 0.0016 5.5E-08 63.6 5.3 31 204-234 19-51 (201)
477 1qhl_A Protein (cell division 96.6 0.00031 1.1E-08 70.3 0.1 30 208-237 30-59 (227)
478 3bh0_A DNAB-like replicative h 96.6 0.018 6.1E-07 60.4 13.8 27 203-229 64-92 (315)
479 2bbw_A Adenylate kinase 4, AK4 96.6 0.00091 3.1E-08 67.6 3.6 28 208-235 30-57 (246)
480 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 62.8 4.3 29 526-554 6-34 (175)
481 3ney_A 55 kDa erythrocyte memb 96.6 0.00097 3.3E-08 65.0 3.6 29 202-230 14-44 (197)
482 2if2_A Dephospho-COA kinase; a 96.6 0.00088 3E-08 65.4 3.2 25 208-233 4-28 (204)
483 3iij_A Coilin-interacting nucl 96.6 0.0011 3.8E-08 63.3 3.8 29 206-234 12-40 (180)
484 3iij_A Coilin-interacting nucl 96.6 0.0018 6E-08 61.9 5.1 32 523-554 10-41 (180)
485 2ze6_A Isopentenyl transferase 96.6 0.001 3.5E-08 67.7 3.5 29 208-236 4-32 (253)
486 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.3E-08 63.1 4.0 29 207-235 4-32 (184)
487 4e22_A Cytidylate kinase; P-lo 96.6 0.0011 3.8E-08 67.4 3.7 31 205-235 25-57 (252)
488 1z6t_A APAF-1, apoptotic prote 96.6 0.015 5.3E-07 66.4 13.8 47 171-228 124-170 (591)
489 3e1s_A Exodeoxyribonuclease V, 96.6 0.0035 1.2E-07 71.5 8.1 25 208-232 207-231 (574)
490 1knq_A Gluconate kinase; ALFA/ 96.6 0.0015 5.2E-08 62.0 4.4 30 524-553 8-37 (175)
491 1gvn_B Zeta; postsegregational 96.5 0.0037 1.3E-07 64.8 7.6 37 524-560 33-69 (287)
492 3cm0_A Adenylate kinase; ATP-b 96.5 0.00098 3.4E-08 63.9 2.9 28 208-235 7-34 (186)
493 1zuh_A Shikimate kinase; alpha 96.5 0.0013 4.4E-08 62.1 3.6 28 208-235 10-37 (168)
494 2orw_A Thymidine kinase; TMTK, 96.5 0.00071 2.4E-08 65.4 1.7 23 525-547 4-26 (184)
495 3ice_A Transcription terminati 96.5 0.01 3.5E-07 63.3 10.7 32 199-230 166-199 (422)
496 2iyv_A Shikimate kinase, SK; t 96.5 0.0019 6.5E-08 61.9 4.6 30 526-555 4-33 (184)
497 2q6t_A DNAB replication FORK h 96.5 0.0076 2.6E-07 66.5 9.9 27 204-230 197-225 (444)
498 1j8m_F SRP54, signal recogniti 96.5 0.016 5.4E-07 60.3 11.7 54 180-236 73-129 (297)
499 2pez_A Bifunctional 3'-phospho 96.5 0.0018 6.1E-08 61.9 4.1 34 205-238 3-41 (179)
500 3lw7_A Adenylate kinase relate 96.4 0.0013 4.4E-08 62.0 3.1 27 208-235 4-30 (179)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-77 Score=698.55 Aligned_cols=483 Identities=38% Similarity=0.646 Sum_probs=386.3
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
...++++|+||||++++|++|++.+.+|+.+|++|+.+++.+|+|+|||||||||||+|+|++|++++.++..+++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~---- 271 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING---- 271 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH----
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh----
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
++++++|.|+.+++++.+|..|..+.||||||||+|+|+++|.+..++.
T Consensus 272 -------------------------------~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~ 320 (806)
T 3cf2_A 272 -------------------------------PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp -------------------------------HHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTT
T ss_pred -------------------------------HHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChH
Confidence 5677899999999999999999999999999999999999886544433
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~ 402 (741)
+ .+.+.+++..|+++....+|.||++||+++.+|++++|+||||+.|+++.|+..+|.+| ++.|...+....++
T Consensus 321 ~---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I---L~~~l~~~~~~~dv 394 (806)
T 3cf2_A 321 E---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQIHTKNMKLADDV 394 (806)
T ss_dssp H---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH---HHHTCSSSEECTTC
T ss_pred H---HHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH---HHHHhcCCCCCccc
Confidence 3 46677788888887778899999999999999999999999999999999999999999 88888888888899
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcc-----------------ccchHhHHHHHHHhcccccccccCcchhc
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSERE-----------------YVTQEDFMKAVRKVSDNKKLDHCNSYRTE 465 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~-----------------~i~~~d~~~a~~~~~~~~~~~~~~~~~~~ 465 (741)
++..++..|.||+|+||.++|++|++.++++... .++.+||..++....+.......
T Consensus 395 dl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~------ 468 (806)
T 3cf2_A 395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV------ 468 (806)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCC------
T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCccccccc------
Confidence 9999999999999999999999999998876432 34556676666655443221100
Q ss_pred cccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHH
Q psy11254 466 AGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 545 (741)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a 545 (741)
.....+.++++ ......+..+.+.+.+|+.+|+.|.++++.+++++|||||||||||++|+++|
T Consensus 469 -------~~~p~v~w~di---------ggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 469 -------VEVPQVTWEDI---------GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp -------CBCCCCCSTTC---------CSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHH
T ss_pred -------ccCCCCCHHHh---------CCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHH
Confidence 00111222221 00111233456778899999999999999999999999999999999999999
Q ss_pred HHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC
Q psy11254 546 SQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 625 (741)
Q Consensus 546 ~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~ 625 (741)
++++.+|+.+++++++++|+|+++++++.+|+.|+...||||||||+|++++.|+...++.+....+++++||.+|||+.
T Consensus 533 ~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred HHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999975544444566789999999999999
Q ss_pred CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHH
Q psy11254 626 SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATV 705 (741)
Q Consensus 626 ~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~ 705 (741)
+.++|+||+|||+|+.||||++||||||++|+||+|+.++|.+||+.+++..+...+++...+.......+|+.+.....
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999776665665555555556667777666555
Q ss_pred Hhh
Q psy11254 706 SVI 708 (741)
Q Consensus 706 ~~~ 708 (741)
+++
T Consensus 693 ~A~ 695 (806)
T 3cf2_A 693 RAC 695 (806)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-58 Score=498.79 Aligned_cols=374 Identities=44% Similarity=0.734 Sum_probs=338.3
Q ss_pred hhhHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccc
Q psy11254 8 EVRHKTLQDYRK-KLTE----HAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKS 82 (741)
Q Consensus 8 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (741)
+..+..++.|.+ ++.+ +.+..+.++++..+.+++.+....++++++.+++.++. |+++++.++++
T Consensus 13 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~------v~~~~~~~~~~---- 82 (405)
T 4b4t_J 13 ETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSY------VGEVIKIVSDK---- 82 (405)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE------EEEEEEECTTS----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce------EEEEEEEecCC----
Confidence 334455555543 2322 23445667777777888888888899999999998887 89999999988
Q ss_pred hhhHHhhhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCcccccccc
Q psy11254 83 ENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSH 162 (741)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (741)
+++++.++++++++++.+.++...+++|++|.++..++.+++.+|...+|.+..+..
T Consensus 83 -----------------------~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~ 139 (405)
T 4b4t_J 83 -----------------------KVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMV 139 (405)
T ss_dssp -----------------------CEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEE
T ss_pred -----------------------eEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccc
Confidence 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
++.|+++|+|||||+++|++|++.|.+|+.+|++|+.+|+.+|+|+|||||||||||+|||++|++++.+|..+++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~---- 215 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG---- 215 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG----
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
++++++|+|++++.++++|..|..+.||||||||+|+++++|.....+.
T Consensus 216 -------------------------------s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~ 264 (405)
T 4b4t_J 216 -------------------------------AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264 (405)
T ss_dssp -------------------------------GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG
T ss_pred -------------------------------HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC
Confidence 6777899999999999999999999999999999999999998777777
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~ 402 (741)
+.+..+.+.++|++|+++....+|.||+|||+++.||||++||||||+.|+++.|+..+|.+| ++.|...+....++
T Consensus 265 ~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~I---l~~~~~~~~l~~dv 341 (405)
T 4b4t_J 265 DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEI---LRIHSRKMNLTRGI 341 (405)
T ss_dssp GGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHH---HHHHHTTSBCCSSC
T ss_pred cHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHH---HHHHhcCCCCCccC
Confidence 888899999999999999888999999999999999999999999999999999999999999 88888888888899
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
|+..++..|+||+|+||.++|++|++.++++.+..++.+||..|++++.+
T Consensus 342 dl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 342 NLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988754
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-58 Score=503.08 Aligned_cols=375 Identities=67% Similarity=1.099 Sum_probs=342.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhh
Q psy11254 10 RHKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKAL 89 (741)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (741)
+.+.+++|+++++++..++.+++.+.+..+.+.+...+.+++++.+++.++. |+++++.++++
T Consensus 53 ~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~------vg~~~~~~~~~----------- 115 (437)
T 4b4t_L 53 HNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQL------IGEVMKELSEE----------- 115 (437)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE------EEEEEECSSSS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCce------eeeheeeecCC-----------
Confidence 4467788899999999999999999999999999999999999999999987 89999999887
Q ss_pred hhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCC
Q psy11254 90 QSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDIT 169 (741)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (741)
+.++++++++++++++.+.++...+++|++|.++..++.+.+.+|...+|.+..+..++.|+++
T Consensus 116 ----------------~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~ 179 (437)
T 4b4t_L 116 ----------------KYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEIT 179 (437)
T ss_dssp ----------------CEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSC
T ss_pred ----------------cEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCC
Confidence 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
|+|||||+++|++|++.+.+|+.+|++|..+|+.+|+|+|||||||||||+||++||++++.+|..+++
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~----------- 248 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA----------- 248 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG-----------
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
+.++++|.|++++.++.+|..|..+.||||||||+|+++++|.+.+.+.+.+..+.
T Consensus 249 ------------------------s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~ 304 (437)
T 4b4t_L 249 ------------------------SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRT 304 (437)
T ss_dssp ------------------------GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHH
T ss_pred ------------------------hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHH
Confidence 67778999999999999999999999999999999999999987777778888999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHH
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVK 409 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~ 409 (741)
+.++|.+|+++.+.+++.||+|||+++.||||++||||||+.|+++.|+..+|.+| ++.|...+....++|+..++.
T Consensus 305 l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~I---l~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 305 LMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI---FKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHH---HHHHHHTSCBCSCCCHHHHHH
T ss_pred HHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHH---HHHHhcCCCCCcccCHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999 788888887788899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccccc
Q psy11254 410 LSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKK 455 (741)
Q Consensus 410 ~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 455 (741)
.|+||+|+||.++|++|++.++++.+..++.+||..|++++.+...
T Consensus 382 ~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 382 MSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999988765443
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-57 Score=490.81 Aligned_cols=373 Identities=41% Similarity=0.703 Sum_probs=334.2
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHh
Q psy11254 10 RHKTLQDYRKK-LTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKA 88 (741)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (741)
+.+.++..+++ +.+...+++++.+.++.++.+.+.+++.+++++++++.++. |+++++.++++
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~g~~~~~~~~~---------- 116 (437)
T 4b4t_I 53 TRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLS------IGTLEEIIDDD---------- 116 (437)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEE------EEEEEEECTTS----------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCce------eEEEEEEecCC----------
Confidence 44555555433 45556667777777777788888888999999999999998 99999999998
Q ss_pred hhhccccccccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCC
Q psy11254 89 LQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDI 168 (741)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (741)
+++|++++++++++.+.+.++...+++|++|.++..++.+++.+|...||.+..|..++.|++
T Consensus 117 -----------------~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v 179 (437)
T 4b4t_I 117 -----------------HAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTE 179 (437)
T ss_dssp -----------------EEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCC
T ss_pred -----------------EEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHH
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~ 248 (741)
+|+|||||+++|++|++.+.+|+.+|++|+.+|+.+++|+|||||||||||+||++||++++.+|..+++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~---------- 249 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG---------- 249 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES----------
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
++++++|+|++++.++.+|..|....||||||||+|+++++|.....+.+.+..+
T Consensus 250 -------------------------s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~ 304 (437)
T 4b4t_I 250 -------------------------SELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQR 304 (437)
T ss_dssp -------------------------GGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHH
T ss_pred -------------------------HHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHH
Confidence 6777899999999999999999999999999999999999998777777778889
Q ss_pred HHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHH
Q psy11254 329 TLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVV 408 (741)
Q Consensus 329 ~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la 408 (741)
.+.++|+.++++...++|.||+|||+++.||+|++||||||+.|+++.|+..+|.+| ++.|...+....++|+..++
T Consensus 305 ~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~I---l~~~l~~~~l~~dvdl~~LA 381 (437)
T 4b4t_I 305 TMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI---LGIHTSKMNLSEDVNLETLV 381 (437)
T ss_dssp HHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHH---HHHHHTTSCBCSCCCHHHHH
T ss_pred HHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHH---HHHHhcCCCCCCcCCHHHHH
Confidence 999999999998888999999999999999999999999999999999999999999 88888888888899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 409 KLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 409 ~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
..|+||+|+||.++|++|++.++++.+..++.+||..|++++.++
T Consensus 382 ~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 382 TTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887553
No 5
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.8e-56 Score=533.05 Aligned_cols=487 Identities=37% Similarity=0.639 Sum_probs=378.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
..++++|++|+|+++++++|++.+.+|+.++++|+++++..+.+++|+||||||||||+++||+.++..+..+.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~----- 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING----- 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH-----
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc-----
Confidence 356799999999999999999999999999999999999999999999999999999999999999888877765
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
.++.+.+.|+..++++.+|..+....|+++|+||+|.++..+..+....+
T Consensus 272 ------------------------------~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~ 321 (806)
T 1ypw_A 272 ------------------------------PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321 (806)
T ss_dssp ------------------------------HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHH
T ss_pred ------------------------------hHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHH
Confidence 34456778888999999999999999999999999999988755444333
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
. +.+..++..+++.....++.+|++||+++.+|+++.+++||+..+.++.|+...|.++ +..+...+....+.+
T Consensus 322 ~---~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i---l~~~~~~~~l~~~~~ 395 (806)
T 1ypw_A 322 R---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQIHTKNMKLADDVD 395 (806)
T ss_dssp H---HHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHH---HHHTTTTSCCCTTCC
T ss_pred H---HHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHH---HHHHHhcCCCcccch
Confidence 3 4444555556665556789999999999999999999999999999999999999998 667777777777888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhcccc-----------------chHhHHHHHHHhcccccccccCcchhcc
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYV-----------------TQEDFMKAVRKVSDNKKLDHCNSYRTEA 466 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i-----------------~~~d~~~a~~~~~~~~~~~~~~~~~~~~ 466 (741)
+..++..+.+|+++++..+|.+|+..++++....+ +.+++..++....+......
T Consensus 396 l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~-------- 467 (806)
T 1ypw_A 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-------- 467 (806)
T ss_dssp THHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCC--------
T ss_pred hHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhh--------
Confidence 99999999999999999999999988776543322 22233333222211100000
Q ss_pred ccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHH
Q psy11254 467 GLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 546 (741)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~ 546 (741)
......+.++++ . .....+..+.+.+.+++.++..+..+++.++.+++|+||||||||++|+++|+
T Consensus 468 -----~~~~~~v~~~di-------~--gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 468 -----VVEVPQVTWEDI-------G--GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp -----CCCCCCCSSCSS-------S--CCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred -----cccCcccccccc-------c--cchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 000000111000 0 00001112234456677778888888999999999999999999999999999
Q ss_pred HhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC
Q psy11254 547 QLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 626 (741)
Q Consensus 547 ~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~ 626 (741)
.++.+++.++++++.++|+|+++..++.+|+.|+...||||||||+|+++..|.......+....++++++|.+|+++..
T Consensus 534 ~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~ 613 (806)
T 1ypw_A 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred HhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999888655444455678899999999999988
Q ss_pred CCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHH
Q psy11254 627 LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVS 706 (741)
Q Consensus 627 ~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~ 706 (741)
..+++||+|||+++.+|+|++|||||+..|+||+|+.++|.+||+.+++......+++...+.......+++.+......
T Consensus 614 ~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~ 693 (806)
T 1ypw_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHH
T ss_pred cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999986654444444444444445556666555555
Q ss_pred hhhhhhh
Q psy11254 707 VIPELLE 713 (741)
Q Consensus 707 ~~~~l~~ 713 (741)
+....+.
T Consensus 694 a~~~a~~ 700 (806)
T 1ypw_A 694 ACKLAIR 700 (806)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5544443
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-54 Score=473.83 Aligned_cols=348 Identities=42% Similarity=0.710 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEEEEecC
Q psy11254 33 EMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKAT 112 (741)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (741)
.+..+.+.+.+.....+++++.+++.++. |+++++.++++ +++++.+
T Consensus 67 ~l~~~~~~~~~e~~~~~ee~~~l~~~~~~------vg~~~e~~d~~---------------------------~~iv~~~ 113 (428)
T 4b4t_K 67 YIKDEQRHLKRELKRAQEEVKRIQSVPLV------IGQFLEPIDQN---------------------------TGIVSST 113 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCEE------EEEEEEEEETT---------------------------EEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCce------eeEEEEEccCC---------------------------eeEEecC
Confidence 34445556666777788888888888776 89999999988 7899999
Q ss_pred CCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHHHhhccCC
Q psy11254 113 NGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVIELPLL 192 (741)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~ 192 (741)
+++++++++.+.++...+++|++|.++...+.++..+|.+.++.+..+..++.|+++|+|||||+++|++|++.+.+|+.
T Consensus 114 ~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~ 193 (428)
T 4b4t_K 114 TGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLV 193 (428)
T ss_dssp TSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCC
Q psy11254 193 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272 (741)
Q Consensus 193 ~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 272 (741)
+|++|..+|+.+|+|+|||||||||||++|+++|+.++.+|..+++
T Consensus 194 ~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~---------------------------------- 239 (428)
T 4b4t_K 194 QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG---------------------------------- 239 (428)
T ss_dssp CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG----------------------------------
T ss_pred CHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec----------------------------------
Confidence 9999999999999999999999999999999999999999999886
Q ss_pred ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEee
Q psy11254 273 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT 352 (741)
Q Consensus 273 ~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at 352 (741)
++++++|+|++++.++.+|..|..+.||||||||+|++++.|.....+.+.+..+.+.++|++|+++.+..++.||+||
T Consensus 240 -~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 240 -SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp -GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred -chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 6677899999999999999999999999999999999999998777777888889999999999999888999999999
Q ss_pred CCCCCCCccccCCCccceeeecC-CCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy11254 353 NRPDTLDPALLRPGRLDRKIEIP-LPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAI 431 (741)
Q Consensus 353 ~~~~~ld~al~r~gr~d~~i~~~-~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~ 431 (741)
|+++.||||++||||||+.|++| +|+..+|..| +..|...+....++|+..++..|+||+|+||.++|++|++.++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~I---l~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLI---FGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHH---HHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHH---HHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 8999999999 7778777777788999999999999999999999999999999
Q ss_pred hhhccccchHhHHHHHHHhc
Q psy11254 432 RSEREYVTQEDFMKAVRKVS 451 (741)
Q Consensus 432 ~~~~~~i~~~d~~~a~~~~~ 451 (741)
++.+..++.+||..|+....
T Consensus 396 r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 396 RKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HTTCSSBCHHHHHHHHHHHS
T ss_pred HCCCCCCCHHHHHHHHHHhh
Confidence 99999999999999987653
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-54 Score=473.20 Aligned_cols=381 Identities=38% Similarity=0.634 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEE
Q psy11254 28 EGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTV 107 (741)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
+.+..++..+.+.+.+..+..+++++..++.+. +|+.+++.++..-......... ...+...........+..
T Consensus 45 ~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~------~v~~~~e~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 117 (434)
T 4b4t_M 45 RSELQRLSHENNVMLEKIKDNKEKIKNNRQLPY------LVANVVEVMDMNEIEDKENSES-TTQGGNVNLDNTAVGKAA 117 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC------CEEEECCC----------------------------CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc------hhhhhhhhhccchhhhhccchh-hhhhhhhhhhhcccCceE
Confidence 344444444445555555555556655444433 3799888877542111111111 112222333444556788
Q ss_pred EEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHHHh
Q psy11254 108 IVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELREVI 187 (741)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e~i 187 (741)
++++++++.+++.+...++...++||++|.++..++.+++.+|...||.+..+..++.|+++|+||||++++|++|++.+
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v 197 (434)
T 4b4t_M 118 VVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAI 197 (434)
T ss_dssp EEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHT
T ss_pred EEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccccc
Q psy11254 188 ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKT 267 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (741)
.+|+.+|++|..+|+.+|+|+|||||||||||+||+++|++++.+|..+++
T Consensus 198 ~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~----------------------------- 248 (434)
T 4b4t_M 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA----------------------------- 248 (434)
T ss_dssp HHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG-----------------------------
T ss_pred HHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh-----------------------------
Confidence 999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeE
Q psy11254 268 YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347 (741)
Q Consensus 268 ~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~ 347 (741)
+.++++|+|++++.++.+|..|....||||||||+|+++++|.+...+.+.+..+.+.++|+.|+++.+.++|.
T Consensus 249 ------s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 249 ------PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp ------GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred ------hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 67778999999999999999999999999999999999999987777778888899999999999998889999
Q ss_pred EEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHH
Q psy11254 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAG 427 (741)
Q Consensus 348 vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~ 427 (741)
||+|||+++.||+|++||||||+.|+++.|+..+|.+| ++.|...+....++++..+++.|+||+|+||.++|++|+
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~I---l~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI---LQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHH---HHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHH---HHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 777877777778899999999999999999999999999
Q ss_pred HHHHhhhccccchHhHHHHHHHhccc
Q psy11254 428 LFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 428 ~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
+.++++.+..++.+||..|++++.++
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999887654
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-53 Score=458.80 Aligned_cols=309 Identities=50% Similarity=0.890 Sum_probs=296.3
Q ss_pred EEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCCCCCcccccChHHHHHHHHH
Q psy11254 106 TVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELRE 185 (741)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~i~e 185 (741)
+++++.+++++|+|++.+.++...|++|++|.++..++.++..+|...||.+..|..++.|+++|+|||||+++|++|++
T Consensus 144 ~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e 223 (467)
T 4b4t_H 144 KYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLRE 223 (467)
T ss_dssp CCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHH
T ss_pred cEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccc
Q psy11254 186 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLE 265 (741)
Q Consensus 186 ~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (741)
.|.+|+.+|++|..+|+.+|+|+|||||||||||+||++||++++.+|..+++
T Consensus 224 ~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~--------------------------- 276 (467)
T 4b4t_H 224 VVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG--------------------------- 276 (467)
T ss_dssp HTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG---------------------------
T ss_pred HHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh---------------------------
Confidence 99999999999999999999999999999999999999999999999999986
Q ss_pred ccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCC
Q psy11254 266 KTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 345 (741)
Q Consensus 266 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~ 345 (741)
+.++++|+|++++.++.+|..|....||||||||+|+++.+|.....+.+....+.+.++|.+|+++...++
T Consensus 277 --------s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 277 --------SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp --------GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred --------HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 677789999999999999999999999999999999999999887777788888999999999999988899
Q ss_pred eEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHH
Q psy11254 346 VKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTE 425 (741)
Q Consensus 346 v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~ 425 (741)
|.||+|||+++.||+|++||||||+.|+|+.|+..+|.+| ++.|...+....++++..+++.|+||+|+||.++|++
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~I---lk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANI---FRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHH---HHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHH---HHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 8888888888889999999999999999999999999
Q ss_pred HHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 426 AGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 426 A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
|++.++++.+..++.+||..|++++..
T Consensus 426 Aa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 426 AGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 999999999999999999999988754
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-42 Score=370.13 Aligned_cols=232 Identities=47% Similarity=0.743 Sum_probs=212.6
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+.+.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+
T Consensus 159 ~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 159 EIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp HHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
..+||||||||+|+++++|...+++.+.+..++++++|++|||+.+.++|+||+|||+|+.||||++||||||+.|+||+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC
Confidence 99999999999999999998777777778899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+.++|.+||+.|++.+....+++...+.......+|+.+.....+++...+.+.+..++.+++..++.-|.
T Consensus 319 Pd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp CCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 999999999999999887766666666666667778888887777777777777888899999999887764
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-41 Score=361.31 Aligned_cols=232 Identities=44% Similarity=0.719 Sum_probs=211.5
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+.+.+.+|+.+|++|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+
T Consensus 193 ~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 193 EIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp HHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
..+||||||||+|+++.+|...+.+.+.+..++++++|++|||++..++|+||+|||+|+.||||++||||||++|+||+
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l 352 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC
Confidence 99999999999999999998777767778889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
||.++|.+||+.|++.+....+++...+.......+|+.+.....+++...+.+....++.+++..++.-|.
T Consensus 353 Pd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 353 PDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 999999999999999877666666666666667778888887777777777778888899999998887664
No 11
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=362.38 Aligned_cols=232 Identities=64% Similarity=0.970 Sum_probs=211.2
Q ss_pred ccccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 501 DYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 501 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+.+.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++.+++.+|..|+
T Consensus 192 ~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 192 ELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp HHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 581 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
..+||||||||+|+++++|...+.+.+.+..+++++||++|||+++.++|+||+|||+|+.||||++||||||++|+||+
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l 351 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCC
Confidence 99999999999999999998877777778899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+.++|.+||+.|++.+....+++...+.......+|+.+......++...+.+....++.+++..++.-|.
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999877766666666666667778888877777776666777778899999998887653
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=357.99 Aligned_cols=231 Identities=48% Similarity=0.830 Sum_probs=211.5
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCC
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p 661 (741)
.+||||||||+|+++.+|...+.+.+....++++++|++|||+...++|+||+|||+|+.||||++||||||++|+||+|
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 99999999999999999988777777788899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 662 NEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
+.++|.+||+.|++.+....+++...+.......+|+.+.....+++...+.+.....+.+++..++.-|.
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 99999999999999887776776666666667778888877777777666777888899999998887765
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-40 Score=361.71 Aligned_cols=229 Identities=45% Similarity=0.724 Sum_probs=207.7
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+.+.+.+|+.+|++|.++|+++++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+.
T Consensus 193 l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 193 LVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE 272 (434)
T ss_dssp HHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCC
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p 661 (741)
.+||||||||+|+++++|...+.+.+.+..++++++|++|||+.+.++|+||+|||+|+.||||++||||||++|+||+|
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 99999999999999999987766677788899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHH
Q psy11254 662 NEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLG 730 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g 730 (741)
+.++|.+||+.|++.+....+++...+.......+|+.+.....+++...+.+....++.+++..++.-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 999999999999998777666766666666677788888777777766667777778999999887653
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-39 Score=352.88 Aligned_cols=230 Identities=43% Similarity=0.695 Sum_probs=207.3
Q ss_pred cccceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh
Q psy11254 502 YKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581 (741)
Q Consensus 502 ~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~ 581 (741)
+.+.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++.+++.+|..|+.
T Consensus 184 l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 184 IREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcC-C
Q psy11254 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP-L 660 (741)
Q Consensus 582 ~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~-~ 660 (741)
.+|||+||||+|+++..|.....+.+.+..+++++||++|||+.+..+|+||+|||+|+.||||++||||||+.|+|| +
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 999999999999999999777766777888999999999999999999999999999999999999999999999997 8
Q ss_pred CCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 661 PNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 661 p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
|+.++|..||+.|+..+....+++...+.......+|+.+.....+++...+.+.....+.+++..++.-+
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 99999999999999887766666655555556677788777777777766777788889999999887643
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.9e-39 Score=377.00 Aligned_cols=235 Identities=40% Similarity=0.740 Sum_probs=185.9
Q ss_pred cCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 162 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 162 ~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
..+.|+++|++|||++++|++|++.+.+|+.+++.|...++.+++|+|||||||||||++|+++|++++.+|..+++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~--- 544 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG--- 544 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH---
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEecc---
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
++++++|+|++++.++++|..|+...||||||||+|+++++|+....+
T Consensus 545 --------------------------------~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 545 --------------------------------PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp --------------------------------HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred --------------------------------chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Confidence 677889999999999999999999999999999999999988654444
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
.+....+.+.++|.+|+++....+|.||+|||+|+.||++++||||||+.|+++.|+..+|.+| ++.+...+....+
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~i---l~~~l~~~~~~~~ 669 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI---LKANLRKSPVAKD 669 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHT---TTTTSSCC--CCC
T ss_pred CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHH---HHHHhcCCCCCCC
Confidence 4445668889999999999888899999999999999999999999999999999999999999 7788887777788
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
+|+..+++.|+||+|+||.++|++|++.++++.
T Consensus 670 ~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 670 VDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=303.42 Aligned_cols=248 Identities=40% Similarity=0.675 Sum_probs=194.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.|+++|+||||++++|++|++.+.+|+.++++|+++++.+++|++|+||||||||||+|+||+.+++.+..+.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g----- 77 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKG----- 77 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEET-----
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEc-----
Confidence 357899999999999999999999999999999999999999999999999999999999999999887766654
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
.++.+.|.|+.++.++.+|..+....|+++|+||+|.++..+......
T Consensus 78 ------------------------------~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~-- 125 (274)
T 2x8a_A 78 ------------------------------PELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG-- 125 (274)
T ss_dssp ------------------------------TTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------
T ss_pred ------------------------------HHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcch--
Confidence 334456778888889999999988899999999999998765322111
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC---CCcccC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG---PIAKHG 400 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~---~~~~~~ 400 (741)
...+.+.+++..|++......+.++++||+++.+|++++|+||||+.|+++.|+..+|.+| ++.+.. ......
T Consensus 126 -~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i---l~~~~~~~~~~~~~~ 201 (274)
T 2x8a_A 126 -ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI---LKTITKNGTKPPLDA 201 (274)
T ss_dssp --CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH---HHHHTTTTBTTBBCT
T ss_pred -HHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH---HHHHHhcccCCCCcc
Confidence 1234566778888876666778899999999999999999999999999999999999999 544442 334456
Q ss_pred CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhc-----------cccchHhHHHHHHHhcc
Q psy11254 401 EIDYEAVVKLS--DSFNGADLRNVCTEAGLFAIRSER-----------EYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 401 ~~~~~~la~~t--~g~~gadi~~l~~~A~~~a~~~~~-----------~~i~~~d~~~a~~~~~~ 452 (741)
++++..++..+ +||+|+||.++|++|++.++++.. ..++.+||..|++.+.+
T Consensus 202 ~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 202 DVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp TCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred ccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 88999999874 599999999999999998886531 24666666666665543
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.2e-32 Score=303.58 Aligned_cols=249 Identities=43% Similarity=0.728 Sum_probs=215.4
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
.+.++|+||+|++++|+++++.+.. +.++..|.++++.+++|++|+||||||||||+|+||+..+.+|..+++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~------ 82 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG------ 82 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG------
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH------
Confidence 5678999999999999999998875 678899999999999999999999999999999999999998888875
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
++++..|.|...++++.+|+.|....|+||||||+|+++.++.....+.+.
T Consensus 83 -----------------------------~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~ 133 (476)
T 2ce7_A 83 -----------------------------SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133 (476)
T ss_dssp -----------------------------GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------C
T ss_pred -----------------------------HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcH
Confidence 344456778888889999999999999999999999999887665566677
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCH
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~ 404 (741)
+..+.+.+++..++++....++.||++||+++.+|++++|+||||+.+.++.|+..+|.+| +..+........++++
T Consensus 134 ~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~I---l~~~~~~~~l~~~v~l 210 (476)
T 2ce7_A 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKI---LEIHTRNKPLAEDVNL 210 (476)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHH---HHHHHTTSCBCTTCCH
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHH---HHHHHHhCCCcchhhH
Confidence 7778888999999877666789999999999999999999999999999999999999998 6667666666677889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
..++..+.||+|+|+.++|.+|+..+.++....++.+++..++.++..
T Consensus 211 ~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 211 EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 999999999999999999999999998887788999999999987754
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=3.2e-32 Score=289.31 Aligned_cols=232 Identities=41% Similarity=0.755 Sum_probs=195.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.++++|++|+|++++|++|++.+.+|+.+++.|.++++..++|++|+||||||||++++++|+.++.++..+.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~----- 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG----- 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH-----
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999887777654
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+.+.+.|.|...+.++..|..|....|+||||||+|.+...+........
T Consensus 83 ------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~ 132 (301)
T 3cf0_A 83 ------------------------------PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132 (301)
T ss_dssp ------------------------------HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS
T ss_pred ------------------------------HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc
Confidence 34445677887888889999999999999999999999876543211111
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
....+.+.+++..++++....++.||++||+++.+|++++|+|||+..++++.|+..+|.++ +..+........+++
T Consensus 133 ~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i---l~~~l~~~~~~~~~~ 209 (301)
T 3cf0_A 133 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI---LKANLRKSPVAKDVD 209 (301)
T ss_dssp CSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHH---HHHHHTTSCBCSSCC
T ss_pred hHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHH---HHHHHccCCCCccch
Confidence 11123445566666665556789999999999999999999999999999999999999998 666655555556788
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
+..++..+.||+|+|+.++|++|.+.+.++
T Consensus 210 ~~~la~~~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 210 LEFLAKMTNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888764
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1e-30 Score=275.32 Aligned_cols=253 Identities=54% Similarity=0.950 Sum_probs=227.4
Q ss_pred cCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 162 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 162 ~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
....++++|++++|+++++++|.+.+..++..++.+...++..+.+++|+||||||||++++++|+.++..+..+..
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~--- 84 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG--- 84 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG---
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh---
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888877764
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
..+...+.|.....++..|..+....|+||||||+|.+..++.+...+
T Consensus 85 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (285)
T 3h4m_A 85 --------------------------------SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132 (285)
T ss_dssp --------------------------------GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG
T ss_pred --------------------------------HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC
Confidence 444566788888999999999999999999999999999888766666
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
.+...+..+..++..++++....++.||++||.++.+++++.+++||+..+.++.|+.++|.++ +..+........+
T Consensus 133 ~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~i---l~~~~~~~~~~~~ 209 (285)
T 3h4m_A 133 GDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI---LKIHTRKMNLAED 209 (285)
T ss_dssp GGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHH---HHHHHTTSCBCTT
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHH---HHHHHhcCCCCCc
Confidence 7788889999999998877667789999999999999999999999999999999999999998 6666666666677
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
.++..++..+.||+++++..+|+.|...++.+....++.+++..+++.+..
T Consensus 210 ~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 210 VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999999999988889999999999987654
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=6e-30 Score=265.46 Aligned_cols=249 Identities=40% Similarity=0.683 Sum_probs=206.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.+..+|++|+|++++++++.+.+.+ +.++..++.+++.+++|++|+|||||||||+++++++.++.++..+.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~----- 78 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG----- 78 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS-----
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH-----
Confidence 44678999999999999999998875 677888899999999999999999999999999999999887766654
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+.+...+.|...+.++..|..|....|+++||||+|.+...+.....+..
T Consensus 79 ------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~ 128 (257)
T 1lv7_A 79 ------------------------------SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128 (257)
T ss_dssp ------------------------------CSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTT
T ss_pred ------------------------------HHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCc
Confidence 33344566777788888999999889999999999999887654433333
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEID 403 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~ 403 (741)
.+..+.+..++..++++....++.||++||+++.+|+++.|++||++.+.++.|+..+|.++ +..+........+.+
T Consensus 129 ~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~i---l~~~~~~~~l~~~~~ 205 (257)
T 1lv7_A 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI---LKVHMRRVPLAPDID 205 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHH---HHHHHTTSCBCTTCC
T ss_pred hHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHH---HHHHHhcCCCCcccc
Confidence 34456677888888876666789999999999999999999999999999999999999988 555555555566778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhc
Q psy11254 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVS 451 (741)
Q Consensus 404 ~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~ 451 (741)
...++..+.||+++|+.++|++|...+.++....++.+++..+++.+.
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 889999999999999999999999999888888999999999987754
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=276.82 Aligned_cols=227 Identities=36% Similarity=0.649 Sum_probs=191.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc-CCCceeeeccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSSLFV 242 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l-~~~~~~v~~~~~~ 242 (741)
+.++++|+||+|++++|+.|++.+.+|+.++++|.+ +..+++|++|+||||||||+|++++|+.+ +..+..+++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~---- 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS---- 79 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh----
Confidence 457899999999999999999999999999999885 35677899999999999999999999998 777776664
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+.+.+.|.|+.++.++.+|..|...+|+||||||+|++++.+.....
T Consensus 80 -------------------------------~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~-- 126 (322)
T 1xwi_A 80 -------------------------------SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES-- 126 (322)
T ss_dssp -------------------------------CSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCT--
T ss_pred -------------------------------HHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccc--
Confidence 44556788999999999999999999999999999999987754322
Q ss_pred cHHHHHHHHHHHHhccCCC-CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc-C
Q psy11254 323 DREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH-G 400 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~-~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~-~ 400 (741)
....+.+.+++..++++. ...++.||++||+++.+|++++| ||+..+.++.|+..+|..+ +..+....... .
T Consensus 127 -~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~i---l~~~l~~~~~~l~ 200 (322)
T 1xwi_A 127 -EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAM---FKLHLGTTQNSLT 200 (322)
T ss_dssp -THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHH---HHHHHTTCCBCCC
T ss_pred -hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHH---HHHHHhcCCCCCC
Confidence 234556677788887754 35789999999999999999999 9999999999999999998 55554443322 4
Q ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 401 EIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 401 ~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
+.++..++..++||+|+|+..+|++|++.++++.
T Consensus 201 ~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 201 EADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888753
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=2.1e-29 Score=300.80 Aligned_cols=419 Identities=20% Similarity=0.276 Sum_probs=257.8
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
-+++++.|.++.++++.+.+... ...+++|+||||||||+++++++..+......... ..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~-------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~----~~--- 242 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM----AD--- 242 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS-------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGG----TT---
T ss_pred CCCCCccCCHHHHHHHHHHHhcc-------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhh----cC---
Confidence 36788999999999998877531 23468999999999999999999987432100000 00
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
...+......+. ..+.|..+++++..|..+....++||||||+|.+.+.+..... ..
T Consensus 243 ------------------~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~- 301 (758)
T 1r6b_X 243 ------------------CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QV- 301 (758)
T ss_dssp ------------------CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HH-
T ss_pred ------------------CEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hH-
Confidence 000000001111 3577888889999999888888999999999999876543221 11
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccC---CCc
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG---PIA 397 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~---~~~ 397 (741)
....+|.. +...+++.+|++|+.++ .+|+++.+ ||+ .+.++.|+..++.+++..+..+.. ...
T Consensus 302 ---~~~~~L~~---~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~ 372 (758)
T 1r6b_X 302 ---DAANLIKP---LLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVR 372 (758)
T ss_dssp ---HHHHHHSS---CSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHH---HHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 12233333 33357789999998643 57888988 997 699999999999888433221100 000
Q ss_pred ccCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHh----hhccccchHhHHHHHHHhcccccccccCcchhcccc
Q psy11254 398 KHGEIDYEAVVKLS-----DSFNGADLRNVCTEAGLFAIR----SEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAGL 468 (741)
Q Consensus 398 ~~~~~~~~~la~~t-----~g~~gadi~~l~~~A~~~a~~----~~~~~i~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~ 468 (741)
. .+.....++..+ ..+....+..++.+|+..... .....++.+++..++..+....... ..+.....+
T Consensus 373 ~-~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~--~~~~~~~~l 449 (758)
T 1r6b_X 373 Y-TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKS--VSQSDRDTL 449 (758)
T ss_dssp C-CHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCC--SSSSHHHHH
T ss_pred C-CHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccc--cchhHHHHH
Confidence 0 011123344433 345556677788777654432 1234678888888777654221100 000000000
Q ss_pred cccc--ccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCC----CCCceEEEcCCCCChHHHHH
Q psy11254 469 FAIR--SEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGIT----PPKGCLLYGPPGTGKTLLAR 542 (741)
Q Consensus 469 ~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~ll~G~~G~GKt~l~~ 542 (741)
.... .....+.++.....+... -.....|+. +..+++|+||||||||++|+
T Consensus 450 ~~l~~~l~~~v~g~~~~~~~l~~~-----------------------i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 450 KNLGDRLKMLVFGQDKAIEALTEA-----------------------IKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp HHHHHHHTTTSCSCHHHHHHHHHH-----------------------HHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhhccCHHHHHHHHHHH-----------------------HHHHhcccCCCCCCceEEEEECCCCCcHHHHHH
Confidence 0000 000011111111111100 001122332 23369999999999999999
Q ss_pred HHHHHhCccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHH
Q psy11254 543 AVASQLDANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 610 (741)
Q Consensus 543 ~~a~~~~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~ 610 (741)
+++..++.+++.++++++..+ |+|..+. +.+....+...++||||||++.+ ++.+
T Consensus 507 ~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~ 573 (758)
T 1r6b_X 507 QLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDV 573 (758)
T ss_dssp HHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHH
T ss_pred HHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHH
Confidence 999999999999999887553 4443322 23445555566799999999984 3455
Q ss_pred HHHHHHHHHHccCCCC------CCCeEEEEeeCCCC-------------------------CCCccccCCCCcceEEEcC
Q psy11254 611 QRTLMELLNQMDGFDS------LGQVKMIMATNRPD-------------------------TLDPALLRPGRLDRKIEIP 659 (741)
Q Consensus 611 ~~~l~~lL~~~~g~~~------~~~v~vi~tTn~~~-------------------------~ld~al~rpgR~d~~i~~~ 659 (741)
...+.++|+.-.-.+. ..+++||+|||.+. .++|+|++ |||.+|.|+
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~ 651 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeC
Confidence 6667777664321111 14688999999854 67788887 999999999
Q ss_pred CCCHHHHHHHHHHhhcCc
Q psy11254 660 LPNEQARLEILKIHAGPI 677 (741)
Q Consensus 660 ~p~~~~r~~i~~~~~~~~ 677 (741)
+|+.+++..|++.++..+
T Consensus 652 ~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.4e-29 Score=283.72 Aligned_cols=249 Identities=41% Similarity=0.679 Sum_probs=215.9
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
+.++|+|++|++++|+++++.+.. +.++..|.++++.+++|++|+||||||||||+|+||+.++..+..+++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g------- 97 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASG------- 97 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG-------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh-------
Confidence 678999999999999999998765 678889999999999999999999999999999999999888877765
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
+++...+.|...++++.+|..+....|+++||||+|.++..+.....+...+
T Consensus 98 ----------------------------~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e 149 (499)
T 2dhr_A 98 ----------------------------SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDE 149 (499)
T ss_dssp ----------------------------GGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHH
T ss_pred ----------------------------hHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHH
Confidence 3344556788888888899988878899999999999987765433334556
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHH
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYE 405 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~ 405 (741)
..+.+.+++..|+++.....+.+|++||+++.+|++++|+||||+.+.++.|+..+|.+| +..|........++++.
T Consensus 150 ~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~I---L~~~~~~~~l~~dv~l~ 226 (499)
T 2dhr_A 150 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI---LRIHARGKPLAEDVDLA 226 (499)
T ss_dssp HHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHH---HHHTTSSSCCCCSSTTH
T ss_pred HHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHH---HHHHHhcCCCChHHHHH
Confidence 677888999999987666778999999999999999999999999999999999999998 66676666666788899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccc
Q psy11254 406 AVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453 (741)
Q Consensus 406 ~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~ 453 (741)
.++..+.||+|+|+.++|.+|+..+.+.....++.+++..++..+...
T Consensus 227 ~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 227 LLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 999999999999999999999998887777789999999999887543
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=3.7e-29 Score=259.03 Aligned_cols=246 Identities=41% Similarity=0.693 Sum_probs=199.7
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
...+.++|++++|+++++.++++.+.. +.++..++++++.+++|++|+||||||||||+++|++.++..+..+.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~---- 82 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASG---- 82 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH----
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeH----
Confidence 456788999999999999999987654 678899999999999999999999999999999999998866665543
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
..+...+.|...+.+...|..+....|+++++||+|.++..+.......
T Consensus 83 -------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 83 -------------------------------SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp -------------------------------HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred -------------------------------HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 2222344566667788889988878899999999999987664322233
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~ 402 (741)
+.+..+.+.+++..+++......+.++++||+++.+|+++.|++||+..+.++.|+.++|.+| +..+........++
T Consensus 132 ~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i---l~~~~~~~~~~~~~ 208 (254)
T 1ixz_A 132 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI---LRIHARGKPLAEDV 208 (254)
T ss_dssp CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHH---HHHHHTTSCBCTTC
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHH---HHHHHcCCCCCccc
Confidence 455567778888888876555567888899999999999999999999999999999999998 55555555566778
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHH
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 447 (741)
++..++..+.||+|+|+.++|++|...+.+.....++.+++.+++
T Consensus 209 ~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 209 DLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 899999999999999999999999998887777788888887764
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.1e-29 Score=272.38 Aligned_cols=232 Identities=37% Similarity=0.627 Sum_probs=189.6
Q ss_pred cCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 162 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 162 ~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
..+.++++|++|+|++++|+.|++.+.+|...+.++.. +..+++|++|+||||||||++|+++|..++.++..+++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~--- 84 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS--- 84 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH---
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch---
Confidence 34567899999999999999999999999999998887 45677889999999999999999999999988888765
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
+.+.+.|.|+..+.++.+|..|...+|+||||||+|.+...+......
T Consensus 85 --------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (322)
T 3eie_A 85 --------------------------------SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132 (322)
T ss_dssp --------------------------------HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C
T ss_pred --------------------------------HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch
Confidence 455677889999999999999999999999999999999877544344
Q ss_pred ccHHHHHHHHHHHHhccCCC-CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCccc-
Q psy11254 322 ADREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH- 399 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~-~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~- 399 (741)
..... ..+++..++++. ...++.||++||+++.+|+++.+ ||+..+.++.|+..+|.++ +..+.......
T Consensus 133 ~~~~~---~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~i---l~~~~~~~~~~~ 204 (322)
T 3eie_A 133 ASRRI---KTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM---FEINVGDTPCVL 204 (322)
T ss_dssp CTHHH---HHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHH---HHHHHTTCCCCC
T ss_pred HHHHH---HHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHH---HHHHhccCCCCC
Confidence 44333 344555555432 35689999999999999999999 9999999999999999998 55555443322
Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccc
Q psy11254 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREY 437 (741)
Q Consensus 400 ~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~ 437 (741)
.+.++..++..++||+|+|+..+|++|.+.++++....
T Consensus 205 ~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 205 TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567899999999999999999999999988775443
No 26
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=1e-28 Score=294.41 Aligned_cols=424 Identities=22% Similarity=0.327 Sum_probs=245.6
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceeee
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKVV 237 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v~ 237 (741)
-.++++.|.++.++++.+.+..+ ...+++|+||||||||++++++|..+.. .+..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~-------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhCC-------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 46788999999999999887531 2245899999999999999999998722 111111
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
...+|.|+.+.+++..|..+....|+|||||.
T Consensus 244 --------------------------------------~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------- 275 (758)
T 3pxi_A 244 --------------------------------------MGTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------- 275 (758)
T ss_dssp -----------------------------------------------CTTHHHHHHHHHTCCCCEEEECC----------
T ss_pred --------------------------------------ccccccchHHHHHHHHHHHHHhcCCEEEEEcC----------
Confidence 02456788888888899999989999999991
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIH 392 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~ 392 (741)
+ .| .. ..| ......+.+.+|++||..+ .+|+++.| || ..+.++.|+.+++..| +...
T Consensus 276 ~---~~--~~----~~L---~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~i---l~~~ 337 (758)
T 3pxi_A 276 A---ID--AS----NIL---KPSLARGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQI---LQGL 337 (758)
T ss_dssp --------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHH---HHHT
T ss_pred c---hh--HH----HHH---HHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHH---HHHH
Confidence 1 11 11 111 2222356889999999888 69999999 99 5699999999999888 4444
Q ss_pred cCCCcccCCCC-----HHHHHHh-----cCCCCHHHHHHHHHHHHHHHHhhh-ccccchHhHHHHHHHhccc-------c
Q psy11254 393 AGPIAKHGEID-----YEAVVKL-----SDSFNGADLRNVCTEAGLFAIRSE-REYVTQEDFMKAVRKVSDN-------K 454 (741)
Q Consensus 393 ~~~~~~~~~~~-----~~~la~~-----t~g~~gadi~~l~~~A~~~a~~~~-~~~i~~~d~~~a~~~~~~~-------~ 454 (741)
...+.....+. ...++.. +++|.+.....++.+|+..+.... .......++...+..+... .
T Consensus 338 ~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 417 (758)
T 3pxi_A 338 RDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ 417 (758)
T ss_dssp TTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCc
Confidence 44333333322 2333333 345666676777777665433221 1111111111111000000 0
Q ss_pred c-----------------c-cccCcchhccccccccccccccchhHHHHHHHhhccccccccc-------cccccceec-
Q psy11254 455 K-----------------L-DHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESK-------LDYKPVIEL- 508 (741)
Q Consensus 455 ~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~i~~- 508 (741)
. . .....|... .......+..+++...+..+.+.+..... ..+...+..
T Consensus 418 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 492 (758)
T 3pxi_A 418 EFEKAASLRDTEQRLREQVEDTKKSWKEK-----QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSR 492 (758)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSGGGHH-----HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCc
Confidence 0 0 000000000 00122334444455544444332211000 000000000
Q ss_pred cCCChHHH---------HhcCCCC---C-CceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchHHHHH
Q psy11254 509 PLLNPELF---------QRVGITP---P-KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLI 572 (741)
Q Consensus 509 ~~~~~~~~---------~~~~~~~---~-~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s~~~i 572 (741)
-+...... ...+... + .+++|+||||||||++|++++..+ +.+++.++++++...+....
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~---- 568 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSG---- 568 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccccc----
Confidence 00111100 1122222 2 259999999999999999999998 67899999999988876652
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC------CCCCeEEEEeeCCCCC-----
Q psy11254 573 REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD------SLGQVKMIMATNRPDT----- 641 (741)
Q Consensus 573 ~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~------~~~~v~vi~tTn~~~~----- 641 (741)
..++...+...++||||||++.+ +..+...+.++|+.-.-.+ ...++++|+|||.+..
T Consensus 569 ~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 569 GQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp --CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred chhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 23444555567799999999984 3456677777777633221 2236889999997654
Q ss_pred -------CCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc-------ccCCCCcccccccc
Q psy11254 642 -------LDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA-------KHGEIGDAATKWVL 692 (741)
Q Consensus 642 -------ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~-------~~~~~~~~a~~~l~ 692 (741)
++|+|++ |||.+|.|++|+.+++.+|++.++..+. ....+++.+..++.
T Consensus 638 ~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~ 700 (758)
T 3pxi_A 638 MGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVA 700 (758)
T ss_dssp HHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred HHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHH
Confidence 7788887 9999999999999999999999876542 12245555555553
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=1.6e-28 Score=275.93 Aligned_cols=229 Identities=42% Similarity=0.746 Sum_probs=199.5
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
+.++|++|+|++.++++|++.+..++.++++|..++...+.|++|+||||||||+++++|++.++.+|..+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~------- 271 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING------- 271 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH-------
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc-------
Confidence 4678999999999999999999999999999999999999999999999999999999999999888887765
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 325 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~ 325 (741)
..+.+.|.|+....++.+|..|....|++|||||+|.+.+++..........
T Consensus 272 ----------------------------~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 272 ----------------------------PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ----------------------------HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ----------------------------hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHH
Confidence 4455678899999999999999999999999999999998875544433444
Q ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHH
Q psy11254 326 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYE 405 (741)
Q Consensus 326 ~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~ 405 (741)
.+. .++..|++.....++.||++||+++.+++++.++|||+..+.++.|+..+|.++ +..+...+....+.++.
T Consensus 324 ~~~---~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I---L~~~~~~~~l~~~~~l~ 397 (489)
T 3hu3_A 324 IVS---QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI---LQIHTKNMKLADDVDLE 397 (489)
T ss_dssp HHH---HHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH---HHHHTTTSCBCTTCCHH
T ss_pred HHH---HHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH---HHHHHhcCCCcchhhHH
Confidence 444 444445544446789999999999999999999999999999999999999998 77777777777788899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhc
Q psy11254 406 AVVKLSDSFNGADLRNVCTEAGLFAIRSER 435 (741)
Q Consensus 406 ~la~~t~g~~gadi~~l~~~A~~~a~~~~~ 435 (741)
.++..+.||+++|+..+|++|++.++++..
T Consensus 398 ~la~~t~g~s~~dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 398 QVANETHGHVGADLAALCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999887653
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=6e-29 Score=269.99 Aligned_cols=227 Identities=37% Similarity=0.640 Sum_probs=180.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
..++++|++|+|++++++.|++.+.+|+..+.+|.. +..+++|++|+||||||||+||+++|..++.++..+..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~----- 117 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS----- 117 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH-----
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH-----
Confidence 456789999999999999999999999999999887 56778899999999999999999999999988877764
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+.+...|.|...+.++.+|..|....|+||||||+|.+...+.......
T Consensus 118 ------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~- 166 (355)
T 2qp9_X 118 ------------------------------SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA- 166 (355)
T ss_dssp ------------------------------HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTH-
T ss_pred ------------------------------HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchH-
Confidence 3445667888889999999999999999999999999998765433332
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc-cCC
Q psy11254 324 REIQRTLMELLNQMDGFDS-LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK-HGE 401 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~-~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~-~~~ 401 (741)
..+...+++..++++.. ..++.||++||+++.+|++++| ||+..+.++.|+..+|..+ +..+...... ..+
T Consensus 167 --~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~i---l~~~l~~~~~~~~~ 239 (355)
T 2qp9_X 167 --SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTM---FEINVGDTPSVLTK 239 (355)
T ss_dssp --HHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHH---HHHHHTTSCBCCCH
T ss_pred --HHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHH---HHHHHhhCCCCCCH
Confidence 23444555666654432 4679999999999999999999 9999999999999999998 5555444332 235
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
.++..++..++||+|+||..+|++|.+.++++.
T Consensus 240 ~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 240 EDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999988764
No 29
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=7.7e-29 Score=259.18 Aligned_cols=224 Identities=37% Similarity=0.571 Sum_probs=174.4
Q ss_pred cceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC
Q psy11254 504 PVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 504 ~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~ 583 (741)
+.+.+|+.+++.++++++..+.|++|+|||||||||+++++|+.++.+++.+++.++.+.|+|++++.++.+|+.++...
T Consensus 24 ~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 24 MAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA 103 (274)
T ss_dssp HHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
||++|+||+|.++..|..... ....+.+++++.+|+|......++++++||+|+.+|+|++||||||+.|+|++|+.
T Consensus 104 p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~ 180 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180 (274)
T ss_dssp SEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH
T ss_pred CCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH
Confidence 999999999998876643211 12346789999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC---ccccCCCCccccccc--ccccccchHHHHHHHhhhhhhhc-----------CCCcccHHHHHHH
Q psy11254 664 QARLEILKIHAGP---IAKHGEIGDAATKWV--LPFTAGGFIYIATVSVIPELLED-----------TSPKQTVKEILAL 727 (741)
Q Consensus 664 ~~r~~i~~~~~~~---~~~~~~~~~~a~~~l--~~~~s~gf~~~a~~~~~~~l~~~-----------~~~~~s~~~i~~~ 727 (741)
++|.+||+.+++. .....+++...+... ....+++.+.....+++...+.+ ....++.+|+..+
T Consensus 181 ~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~a 260 (274)
T 2x8a_A 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEA 260 (274)
T ss_dssp HHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHH
Confidence 9999999999853 222223333332222 22455555555444333322221 2346788888887
Q ss_pred HHH
Q psy11254 728 LLG 730 (741)
Q Consensus 728 l~g 730 (741)
+.-
T Consensus 261 l~~ 263 (274)
T 2x8a_A 261 FKK 263 (274)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
No 30
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=1.2e-27 Score=251.09 Aligned_cols=244 Identities=42% Similarity=0.696 Sum_probs=198.1
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
.+.++|++++|++++++++++.+.. +.++.+++++++.+++|++|+||||||||||+++|++.+...+..+.+
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~------ 106 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASG------ 106 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecH------
Confidence 3678999999999999999887654 678899999999999999999999999999999999998866665543
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
..+...+.+...+.+..+|..+....|+++++||+|.++..+.......+.
T Consensus 107 -----------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~ 157 (278)
T 1iy2_A 107 -----------------------------SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND 157 (278)
T ss_dssp -----------------------------HHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CH
T ss_pred -----------------------------HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcch
Confidence 122234456666777788998887889999999999998765432222344
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCH
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDY 404 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~ 404 (741)
+..+.+.+++..+++......+.++++||+++.+|+++.|++||+..+.++.|+..+|.+| +..+........++++
T Consensus 158 ~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i---l~~~~~~~~~~~~~~~ 234 (278)
T 1iy2_A 158 EREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI---LRIHARGKPLAEDVDL 234 (278)
T ss_dssp HHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHH---HHHHHTTSCBCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHH---HHHHHccCCCCcccCH
Confidence 5567778888888875544567888899999999999999999999999999999999998 5555555555677889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHH
Q psy11254 405 EAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447 (741)
Q Consensus 405 ~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 447 (741)
..++..+.||+++||.++|++|...+.+.....++.+++.+++
T Consensus 235 ~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 235 ALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999999999999999999998887777778888887764
No 31
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=5.7e-28 Score=269.26 Aligned_cols=222 Identities=39% Similarity=0.589 Sum_probs=176.5
Q ss_pred CChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 511 ~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
.++..+.+++...+.+++|+||||||||++|+++|++.+.+|+.++++++...|+|.++..++.+|..|+...|||||||
T Consensus 36 ~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfID 115 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFID 115 (476)
T ss_dssp HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEe
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHH
Q psy11254 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEIL 670 (741)
Q Consensus 591 E~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~ 670 (741)
|+|.+..+|.....+.+.+..++++++|.+|+++....+++||+|||+++.+|++++||||||+.|+|++|+.++|.+||
T Consensus 116 Eid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il 195 (476)
T 2ce7_A 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195 (476)
T ss_dssp TGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred chhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHH
Confidence 99999988865444455566789999999999987777899999999999999999999999999999999999999999
Q ss_pred HHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 671 KIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 671 ~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
+.++.......+++...+....+..+++.+......++-....+....++.+++..++..+.
T Consensus 196 ~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 196 EIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 99998765443443333333333334344444433343333344456788888888776653
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=252.81 Aligned_cols=248 Identities=38% Similarity=0.631 Sum_probs=180.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 166 GDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 166 ~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
++++|++++|++++|+.|++.+.. +..+..|...+...+++++|+||||||||++++++|+.++.++..+..
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~------- 72 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG------- 72 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEET-------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEech-------
Confidence 457899999999999999998876 667788888899999999999999999999999999999988877765
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC-ccH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS-ADR 324 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~-lD~ 324 (741)
+.+...+.|.....++..|..+....|+||||||+|.+..++.....+ .+.
T Consensus 73 ----------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 124 (262)
T 2qz4_A 73 ----------------------------AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNT 124 (262)
T ss_dssp ----------------------------TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-----------------
T ss_pred ----------------------------HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccch
Confidence 233345667777888889999999999999999999998776432211 134
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccC--CC
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG--EI 402 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~--~~ 402 (741)
+.+..+..++..+++.....++.+|++||.++.+|+++.++|||+..+.++.|+..+|.++ +..+........ +.
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~i---l~~~~~~~~~~~~~~~ 201 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREI---FEQHLKSLKLTQSSTF 201 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHH---HHHHHHHTTCCBTHHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHH---HHHHHHhCCCCcchhh
Confidence 4556777888888776556789999999999999999999999999999999999999887 433332222221 12
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 403 ~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
....++..+.||+++++..+|++|...+.++....++.+++..+++.+..
T Consensus 202 ~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 202 YSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 24678899999999999999999999988877788999999988877643
No 33
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=8.8e-29 Score=262.81 Aligned_cols=198 Identities=38% Similarity=0.669 Sum_probs=165.6
Q ss_pred ceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCC
Q psy11254 505 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQP 584 (741)
Q Consensus 505 ~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p 584 (741)
.+.+|+.+++.+..+++.++.+++|+||||||||++|+++|+.++.+++.++++++.++|+|+++..++.+|+.|+...|
T Consensus 30 ~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p 109 (301)
T 3cf0_A 30 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP 109 (301)
T ss_dssp HHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCC
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHH
Q psy11254 585 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 585 ~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
|||||||+|.+...|............++++++|..|+++....+++||+|||+++.+|++++|||||+..|+|++|+.+
T Consensus 110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHH
Confidence 99999999999877654322222223467888999999887778899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccccCCCCcccccccccccccchHHH
Q psy11254 665 ARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYI 702 (741)
Q Consensus 665 ~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~ 702 (741)
+|.+||+.++.......+++...+.......+++.+..
T Consensus 190 ~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 190 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 99999999998765444444433333344444444443
No 34
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=9.3e-30 Score=303.20 Aligned_cols=235 Identities=40% Similarity=0.740 Sum_probs=202.3
Q ss_pred cCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 162 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 162 ~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
....++++|++++|++++|++|.+.+.+|..++..+..+++..+.+++|+||||||||||+|+||+.++..+..+.+
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~--- 544 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG--- 544 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC---
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec---
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888877764
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
+.+.+.|.|+.++.++.+|..|....|+||||||+|+++..+.+....
T Consensus 545 --------------------------------~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 545 --------------------------------PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp --------------------------------SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH
T ss_pred --------------------------------hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC
Confidence 556677899999999999999999999999999999999888655444
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
.+....+.+.++|..|+++....++.||+|||+++.+|++++|||||+..++++.|+.++|..| ++.+........+
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I---l~~~l~~~~~~~~ 669 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI---LKANLRKSPVAKD 669 (806)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHH---TTTTTSCC----C
T ss_pred cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHH---HHHHhccCCCCcc
Confidence 4556678888999999987777889999999999999999999999999999999999999999 6777666666677
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
+++..+++.+.+|+|+++.++|++|++.++++.
T Consensus 670 ~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 670 VDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999988764
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=5.9e-28 Score=269.77 Aligned_cols=228 Identities=36% Similarity=0.646 Sum_probs=182.8
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc-CCCceeeecccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSSLF 241 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l-~~~~~~v~~~~~ 241 (741)
...++++|++|+|++++++.|++.+.+|+..+.+|.+ +..+++|++|+||||||||+|++++|+.+ +.++..++.
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~--- 201 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS--- 201 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC---
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH---
Confidence 3467899999999999999999999999988888875 34667889999999999999999999998 666766654
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
+.+.+.|.|...+.++.+|..|....|+||||||+|.+++.+......
T Consensus 202 --------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 249 (444)
T 2zan_A 202 --------------------------------SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249 (444)
T ss_dssp --------------------------------C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG
T ss_pred --------------------------------HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcccc
Confidence 344566778777788889999999999999999999999877544333
Q ss_pred ccHHHHHHHHHHHHhccCCC-CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc-c
Q psy11254 322 ADREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK-H 399 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~-~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~-~ 399 (741)
. ..+.+.+++..++++. ...++.||++||+++.+|++++| ||+..+.++.|+..+|..+ +..+...... .
T Consensus 250 ~---~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~i---l~~~l~~~~~~l 321 (444)
T 2zan_A 250 A---ARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAM---FRLHLGSTQNSL 321 (444)
T ss_dssp G---GHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHH---HHHHHTTSCEEC
T ss_pred H---HHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHH---HHHHHhcCCCCC
Confidence 2 3455667788887754 25689999999999999999999 9999999999999999988 5555544332 2
Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy11254 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE 434 (741)
Q Consensus 400 ~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~ 434 (741)
.+.++..++..++||+|+||..+|++|.+.++++.
T Consensus 322 ~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 322 TEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999888764
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.95 E-value=5.9e-27 Score=282.34 Aligned_cols=447 Identities=20% Similarity=0.297 Sum_probs=241.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceeee
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKVV 237 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v~ 237 (741)
-+++++.|.++.++++.+.+.. ....+++|+||||||||++++++|+.+.. .+..+.
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4678899999999998887642 12346899999999999999999998732 222221
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhc-CCeEEEeccccccccc
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNH-QPCIIFMDEIDAIGGR 314 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~-~P~ILllDEid~l~~~ 314 (741)
. +.+. ..|.|+...+++.+|..+... .|+||||||+|.+.+.
T Consensus 234 ~-----------------------------------~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~ 278 (854)
T 1qvr_A 234 M-----------------------------------GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGA 278 (854)
T ss_dssp C----------------------------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC------
T ss_pred h-----------------------------------HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhcc
Confidence 1 1111 356778888888899888765 7899999999999865
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC----CCCccccCCCccceeeecCCCCHHHHHhccccch
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPIS 390 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~ 390 (741)
+...+ .......+..++. .+++.+|++|+..+ .+++++.+ ||+. +.++.|+..++..++..+
T Consensus 279 ~~~~g---~~~~~~~L~~~l~-------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~- 344 (854)
T 1qvr_A 279 GKAEG---AVDAGNMLKPALA-------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGL- 344 (854)
T ss_dssp ----------------HHHHH-------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHH-
T ss_pred CCccc---hHHHHHHHHHHHh-------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhh-
Confidence 43211 1222333444432 25678999988764 47899998 8975 899999999998874322
Q ss_pred hccCCCcccCCC-----CHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHhhhcc-c-------------------cch
Q psy11254 391 IHAGPIAKHGEI-----DYEAVVKL-----SDSFNGADLRNVCTEAGLFAIRSERE-Y-------------------VTQ 440 (741)
Q Consensus 391 ~~~~~~~~~~~~-----~~~~la~~-----t~g~~gadi~~l~~~A~~~a~~~~~~-~-------------------i~~ 440 (741)
...+..+.++ ....++.. ++.|.......++.+|+......... . +..
T Consensus 345 --~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 422 (854)
T 1qvr_A 345 --KEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKK 422 (854)
T ss_dssp --HHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred --hhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111 12333333 35566667667776665443221000 0 000
Q ss_pred ----------HhHHHH------------------------HHHhccc-------c-cccccCcchhccc-----------
Q psy11254 441 ----------EDFMKA------------------------VRKVSDN-------K-KLDHCNSYRTEAG----------- 467 (741)
Q Consensus 441 ----------~d~~~a------------------------~~~~~~~-------~-~~~~~~~~~~~~~----------- 467 (741)
..+.+. ++..... . .............
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (854)
T 1qvr_A 423 EKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEA 502 (854)
T ss_dssp CSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHH
Confidence 000000 0000000 0 0000000000000
Q ss_pred -c-------ccccccccccchhHHHHHHHhhcccccccc------cc-ccccce-eccCCChHHHH---------hcCCC
Q psy11254 468 -L-------FAIRSEREYVTQEDFMKAVRKVSDNKKLES------KL-DYKPVI-ELPLLNPELFQ---------RVGIT 522 (741)
Q Consensus 468 -~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~-~~~~~i-~~~~~~~~~~~---------~~~~~ 522 (741)
+ .........+..+++...+..+.+.+.... +. .....+ ...+...+... ..|+.
T Consensus 503 ~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~ 582 (854)
T 1qvr_A 503 EVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK 582 (854)
T ss_dssp HHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccC
Confidence 0 000111445666666666665554321100 00 000000 00011111111 12222
Q ss_pred C----CCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhcc------------ccchHHHHHHHHHHHHHhcC
Q psy11254 523 P----PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDK------------YIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 523 ~----~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~------------~~g~s~~~i~~~f~~a~~~~ 583 (741)
. ...++|+||||||||++|++++..+ +.+++.++++++... |+|... .+.+....+...
T Consensus 583 ~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~ 660 (854)
T 1qvr_A 583 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRP 660 (854)
T ss_dssp CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCC
Confidence 2 2479999999999999999999998 778999998876543 223222 133444555566
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEEeeCCC------------------
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIMATNRP------------------ 639 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~tTn~~------------------ 639 (741)
++||||||++.+ +..+...+.++|+.-.-.++ ..+++||+|||..
T Consensus 661 ~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~ 729 (854)
T 1qvr_A 661 YSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIR 729 (854)
T ss_dssp SEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHH
T ss_pred CeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHH
Confidence 799999999974 34455555555553321111 1378899999972
Q ss_pred --------CCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccc-------cCCCCccccccccc
Q psy11254 640 --------DTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAK-------HGEIGDAATKWVLP 693 (741)
Q Consensus 640 --------~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~-------~~~~~~~a~~~l~~ 693 (741)
..+.|+|+. |||.++.|++|+.++...|++.++..+.. ...+++.+..++..
T Consensus 730 ~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 730 DEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 345677776 99999999999999999999998864321 12355555555443
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7.1e-27 Score=245.91 Aligned_cols=227 Identities=48% Similarity=0.793 Sum_probs=193.3
Q ss_pred eeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCe
Q psy11254 506 IELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPC 585 (741)
Q Consensus 506 i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~ 585 (741)
+..++.+++.+..+++.++.+++|+||||||||++|+++|+.++.+++.++++++.+.+.|++...++.+|..++...|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 33 VELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp THHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCe
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHH
Q psy11254 586 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA 665 (741)
Q Consensus 586 Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~ 665 (741)
||||||+|.+..++.....+.+....+.+.++++.++++....+++||+|||.++.+|++++|||||+.+++|+.|+.++
T Consensus 113 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 113 IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp EEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred EEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 99999999999888766666677888999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 666 RLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 666 r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|.+||+.++.......+.+...+.......+++.+......+....+.+....++.+++..++.-+.
T Consensus 193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 9999999988665544444333333344445555555555555555566677899999999887765
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=2.3e-26 Score=238.52 Aligned_cols=219 Identities=37% Similarity=0.580 Sum_probs=171.1
Q ss_pred hHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEccc
Q psy11254 513 PELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 592 (741)
Q Consensus 513 ~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~ 592 (741)
+..+..++...+.+++|+||||||||++|+++++.++.+++.++++++...+.|++...++.+|+.+....||++||||+
T Consensus 34 ~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 34 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp GGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTH
T ss_pred HHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhh
Confidence 34455667778889999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHH
Q psy11254 593 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 593 d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~ 672 (741)
|.+...+............+.++++|..++++....+++||+|||+++.+|++++|||||++.++|++|+.++|.+||+.
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~ 193 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHH
Confidence 99988775443333345567899999999998877889999999999999999999999999999999999999999999
Q ss_pred hhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 673 HAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 673 ~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
++.......+..........+..+++........++.....+.....+.+++..++.-+
T Consensus 194 ~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 194 HMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 98865443333222222222222333444444444444444556789999999887765
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1.4e-28 Score=256.68 Aligned_cols=250 Identities=38% Similarity=0.666 Sum_probs=192.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 164 DPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 164 ~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
+.+.++|++++|.+++++.+++.+.. +..++.|.+++...++|++|+||||||||++++++|+.++.++..+...
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~---- 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGS---- 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSC----
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechH----
Confidence 45678899999999999999998875 7788999999999999999999999999999999999998877666532
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC-CCc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG-TSA 322 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~-~~l 322 (741)
.+...+.|.....++..|..|....|+||||||+|.+...+...+ .+.
T Consensus 79 -------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~ 127 (268)
T 2r62_A 79 -------------------------------SFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSG 127 (268)
T ss_dssp -------------------------------TTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------
T ss_pred -------------------------------HHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCC
Confidence 222233444444455578888888999999999999987653211 111
Q ss_pred cHHHHHHHHHHHHhccCCCC-CCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 323 DREIQRTLMELLNQMDGFDS-LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~-~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
+....+.+..++..+++... ..++.||++||.++.+|+++.|+|||+..+.++.|+.++|.++ +..+...+....+
T Consensus 128 ~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~i---l~~~~~~~~~~~~ 204 (268)
T 2r62_A 128 NDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEI---LKVHIKGVKLAND 204 (268)
T ss_dssp CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHH---HHHHTSSSCCCSS
T ss_pred chhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHH---HHHHHhcCCCCCc
Confidence 11122334566666665432 2458999999999999999999999999999999999999988 5555555555566
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
.++..++..+.||+|+++.++|++|...+.......++.+++..++....+
T Consensus 205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 255 (268)
T 2r62_A 205 VNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIA 255 (268)
T ss_dssp CCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCC
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhh
Confidence 778889999999999999999999999887766778899998877765543
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=1.8e-26 Score=244.32 Aligned_cols=247 Identities=33% Similarity=0.613 Sum_probs=185.4
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
.+.+.++|++++|.+++++.+++.+..|..+++++.+++ .++++++|+|||||||||+++++++.++..+..++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~---- 87 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA---- 87 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES----
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH----
Confidence 345678999999999999999999999988898888765 456789999999999999999999999888877764
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+.+...+.|...+.++..|..+...+|+||||||+|.+...+.......
T Consensus 88 -------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 88 -------------------------------ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp -------------------------------TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CC
T ss_pred -------------------------------HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchH
Confidence 3344566777788888899999999999999999999988765433333
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc-cCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK-HGE 401 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~-~~~ 401 (741)
.......+...+..+.......++.||++||+++.+++++.+ ||+..+.++.|+..+|..+ +..+...... ..+
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~i---l~~~~~~~~~~~~~ 211 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELL---LNRLLQKQGSPLDT 211 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHH---HHHHHGGGSCCSCH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHH---HHHHHHhcCCCCCH
Confidence 333333444444433321112578999999999999999998 9999999999999999887 3333222111 122
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhc------------cccchHhHHHHHHHh
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSER------------EYVTQEDFMKAVRKV 450 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~------------~~i~~~d~~~a~~~~ 450 (741)
.++..++..+.||+++++..+|++|+..++++.. ..++.+|+..++..+
T Consensus 212 ~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 3467889999999999999999999988887542 346666666665543
No 41
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=3.5e-26 Score=256.35 Aligned_cols=220 Identities=39% Similarity=0.587 Sum_probs=175.5
Q ss_pred ChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 512 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 512 ~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
++..+.++++..+.+++|+||||||||++++++|+.++.+++.++++++...++|.....++.+|+.++...|||+||||
T Consensus 52 ~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDE 131 (499)
T 2dhr_A 52 NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 131 (499)
T ss_dssp CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEEC
T ss_pred chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEeh
Confidence 34556678888889999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
+|.+...|.........+..+.++++|.+|+|......++++++||+|+.+|++++||||||+.|+|++|+.++|.+||+
T Consensus 132 Id~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 132 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 211 (499)
T ss_dssp GGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred HHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHH
Confidence 99998877543223345667889999999999987778999999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHH
Q psy11254 672 IHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGV 731 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~ 731 (741)
.|++......++....+....+..+++........++...+.+....++.+++..++.-+
T Consensus 212 ~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 212 IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp HTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 998765443333333333333333334444444333332233344568888888877655
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=244.00 Aligned_cols=246 Identities=36% Similarity=0.606 Sum_probs=191.3
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
...+.++|++|+|++++++.|++.+..|+..+.+|...+ ..+++++|+||||||||++++++|..++.++..+..
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~---- 150 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA---- 150 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG----
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh----
Confidence 345678999999999999999999999888888877664 567789999999999999999999999888877765
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+.+...|.|...+.++.+|..+...+|+||||||+|.+...+.....
T Consensus 151 -------------------------------~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~-- 197 (357)
T 3d8b_A 151 -------------------------------SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH-- 197 (357)
T ss_dssp -------------------------------GGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------
T ss_pred -------------------------------HHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc--
Confidence 34455678888888999999999999999999999999887643222
Q ss_pred cHHHHHHHHHHHHhccCCC--CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc-c
Q psy11254 323 DREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK-H 399 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~--~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~-~ 399 (741)
....+.+.+++..+++.. ...++.||++||.++.+++++++ ||+..+.++.|+..+|.+++ ..+...... .
T Consensus 198 -~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il---~~~~~~~~~~l 271 (357)
T 3d8b_A 198 -ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV---INLMSKEQCCL 271 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHH---HHHHHTSCBCC
T ss_pred -hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHH---HHHHhhcCCCc
Confidence 223445556666666532 23578999999999999999999 99999999999999998873 332221111 1
Q ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhc------------cccchHhHHHHHHHhcc
Q psy11254 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSER------------EYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 400 ~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~------------~~i~~~d~~~a~~~~~~ 452 (741)
.+.++..++..+.||+++++..+|++|...++++.. ..++.+++..+++.+.+
T Consensus 272 ~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 233567889999999999999999999988877432 35677777777766554
No 43
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=4.1e-25 Score=228.61 Aligned_cols=217 Identities=39% Similarity=0.597 Sum_probs=168.3
Q ss_pred ChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 512 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 512 ~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
++..+.++++..+.+++|+|||||||||+++++++.++.+++.+++.++...+.++....++.+|+.+....|+++|+||
T Consensus 37 ~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~De 116 (254)
T 1ixz_A 37 NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 116 (254)
T ss_dssp CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEET
T ss_pred CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehh
Confidence 45667788888889999999999999999999999999999999999999999999989999999999888899999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
+|.+...+.........+..+.+++++.+|+|......++++++||+|+.+|++++|||||++.|+|+.|+.++|.+||+
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 117 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred hhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHH
Confidence 99998776432222344567889999999999877777899999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 672 IHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
.++..+....++....+.......+++........++...+.+....++.+++..++
T Consensus 197 ~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 197 IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 988765433333322222223333334444444444444444445678888887654
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=242.06 Aligned_cols=168 Identities=41% Similarity=0.726 Sum_probs=147.8
Q ss_pred ceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHh-CccEEEEechhhhccccchHHHHHHHHHHHHHhcC
Q psy11254 505 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 505 ~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~-~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~ 583 (741)
.+.+|+.+++++.. +..++++++|+||||||||++|+++|+++ +.+|+.++++++.++|+|+++..++.+|..++...
T Consensus 27 ~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 27 AVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105 (322)
T ss_dssp HHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 34456666666653 35677899999999999999999999999 88999999999999999999999999999999999
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC-CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~-~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
||||||||+|.+.+.|..... ....++++++|..|+++. ...+++||+|||+|+.+|++++| ||+..+++++|+
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 180 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENES---EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 180 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCT---THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCC
T ss_pred CcEEEeecHHHhccccccccc---hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcC
Confidence 999999999999988855422 245678899999999985 35789999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhcCcc
Q psy11254 663 EQARLEILKIHAGPIA 678 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~ 678 (741)
.++|.+||+.++....
T Consensus 181 ~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 181 PHARAAMFKLHLGTTQ 196 (322)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999987643
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=4.7e-25 Score=247.86 Aligned_cols=227 Identities=36% Similarity=0.569 Sum_probs=180.3
Q ss_pred cceeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcC
Q psy11254 504 PVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583 (741)
Q Consensus 504 ~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~ 583 (741)
+.+..++.+++++..++..++.+++|+||||||||++|+++++.++.+|+.++++++.+.|+|+++..++.+|..|....
T Consensus 218 ~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~ 297 (489)
T 3hu3_A 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA 297 (489)
T ss_dssp HHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcC
Confidence 34456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
||+|||||+|.+.+++....+ ....+++.+||..|++.....+++||+|||+++.+|+++.|+|||+..|+|+.|+.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~---~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCC---HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH
T ss_pred CcEEEecchhhhccccccccc---hHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH
Confidence 999999999999988754332 23457788888888888777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcC-----------------CCcccHHHHHH
Q psy11254 664 QARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDT-----------------SPKQTVKEILA 726 (741)
Q Consensus 664 ~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~-----------------~~~~s~~~i~~ 726 (741)
++|.+||+.++..+....+.....+.......+++.+......++...+.+. ...++.+++..
T Consensus 375 ~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~ 454 (489)
T 3hu3_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW 454 (489)
T ss_dssp HHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHH
Confidence 9999999999987655433332333323333334433333333333222221 12467888888
Q ss_pred HHHHHHH
Q psy11254 727 LLLGVFM 733 (741)
Q Consensus 727 ~l~g~~~ 733 (741)
++..+--
T Consensus 455 Al~~~~p 461 (489)
T 3hu3_A 455 ALSQSNP 461 (489)
T ss_dssp HHTSHHH
T ss_pred HHHhCCc
Confidence 8776643
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=239.68 Aligned_cols=245 Identities=33% Similarity=0.614 Sum_probs=181.0
Q ss_pred cCCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccc
Q psy11254 162 HEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF 241 (741)
Q Consensus 162 ~~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~ 241 (741)
.+..+.++|++|+|.+.+++.|.+.+..+...+.++..++ ..+++++|+||||||||++|++||..++.++..+..
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~--- 181 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA--- 181 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS---
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH---
Confidence 3455678999999999999999999999988888888776 446789999999999999999999999988877765
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
..+...|.|.....++..|..|...+|+||||||+|.++..+......
T Consensus 182 --------------------------------~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~ 229 (389)
T 3vfd_A 182 --------------------------------ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD 229 (389)
T ss_dssp --------------------------------CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------C
T ss_pred --------------------------------HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccch
Confidence 445567788888889999999999999999999999998876443333
Q ss_pred ccHHHHHHHHHHHHhccCCCC--CCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcc-
Q psy11254 322 ADREIQRTLMELLNQMDGFDS--LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAK- 398 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~--~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~- 398 (741)
..... +.+++..+++... ..++.||++||+++.+++++++ ||+..+.++.|+..+|..+ +..+......
T Consensus 230 ~~~~~---~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~i---l~~~~~~~~~~ 301 (389)
T 3vfd_A 230 ASRRL---KTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLL---LKNLLCKQGSP 301 (389)
T ss_dssp THHHH---HHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHH---HHHHHTTSCCC
T ss_pred HHHHH---HHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHH---HHHHHHhcCCC
Confidence 33333 3344444443322 3578999999999999999999 9999999999999999988 3333222111
Q ss_pred cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh------------ccccchHhHHHHHHHh
Q psy11254 399 HGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSE------------REYVTQEDFMKAVRKV 450 (741)
Q Consensus 399 ~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~------------~~~i~~~d~~~a~~~~ 450 (741)
..+.++..++..+.||+++++..+|..|+..++++. ...++.+++..+++..
T Consensus 302 l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 302 LTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 122356788999999999999999999998888762 2346667777666554
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=4.3e-25 Score=229.08 Aligned_cols=221 Identities=35% Similarity=0.521 Sum_probs=152.7
Q ss_pred hHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEccc
Q psy11254 513 PELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 592 (741)
Q Consensus 513 ~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~ 592 (741)
+..+..+++..+.+++|+||||||||++|+++|+.++.+++.++++++.+.|.|.+...++.+|..+....|+||||||+
T Consensus 28 ~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDei 107 (262)
T 2qz4_A 28 PERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEI 107 (262)
T ss_dssp CC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred HHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 34455677888899999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccccCCCCCCCCc-ccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 593 DAIGGRRFSEGTS-ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 593 d~~~~~r~~~~~~-~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
|.+..+|...... .+.+....++++|..+++.....++++|+|||.++.+|++++|||||+..++|++|+.++|.+||+
T Consensus 108 d~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 108 DAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp -------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHH
T ss_pred chhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHH
Confidence 9998777443211 123455788999999998877778999999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCCC--cccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHH
Q psy11254 672 IHAGPIAKHGEIG--DAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVFM 733 (741)
Q Consensus 672 ~~~~~~~~~~~~~--~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~~ 733 (741)
.++.......... ...+.......+++.+......++...+.+....++.+++..++.-+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 188 QHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 9987544321111 1112222222333333333333333333334556777777777766543
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=1.7e-25 Score=239.74 Aligned_cols=166 Identities=43% Similarity=0.726 Sum_probs=141.7
Q ss_pred eccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeE
Q psy11254 507 ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586 (741)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~V 586 (741)
.+|+.+++.+.. +..++.+++|+||||||||++|+++|++++.+++.++++++.++|+|+++..++.+|..++...|+|
T Consensus 35 ~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~v 113 (322)
T 3eie_A 35 ILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 113 (322)
T ss_dssp HHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeE
Confidence 345555555554 4566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC-CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHH
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA 665 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~-~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~ 665 (741)
|||||+|.+...|....... ..++.+++|..|++.. ...+++||+|||+++.+|++++| ||+..++|++|+.++
T Consensus 114 l~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 114 IFIDQVDALTGTRGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 188 (322)
T ss_dssp EEEECGGGGSCC------CC---THHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHH
T ss_pred EEechhhhhhccCCCCcchH---HHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHH
Confidence 99999999998875433322 3567788899998874 45679999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcCcc
Q psy11254 666 RLEILKIHAGPIA 678 (741)
Q Consensus 666 r~~i~~~~~~~~~ 678 (741)
|.+||+.++....
T Consensus 189 r~~il~~~~~~~~ 201 (322)
T 3eie_A 189 RTTMFEINVGDTP 201 (322)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCC
Confidence 9999999988643
No 49
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=3.9e-24 Score=224.41 Aligned_cols=217 Identities=39% Similarity=0.597 Sum_probs=166.7
Q ss_pred ChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 512 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 512 ~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
.+..+.++++..+.+++|+|||||||||+++++++.++.+++.+++.++...+.+.....++.+|+.+....|+++|+||
T Consensus 61 ~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDe 140 (278)
T 1iy2_A 61 NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 140 (278)
T ss_dssp CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEET
T ss_pred CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhh
Confidence 45567788888888999999999999999999999999999999999999989999888999999999888899999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
+|.+...+.........+..+.+++++.+++|......++++++||+|+.+|++++|||||++.|+|++|+.++|.+||+
T Consensus 141 id~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~ 220 (278)
T 1iy2_A 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220 (278)
T ss_dssp HHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred hHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHH
Confidence 99988766432222334567889999999999877667899999999999999999999999999999999999999999
Q ss_pred HhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 672 IHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
.++.......++....+....+...++.+......++.....+....++.+++..++
T Consensus 221 ~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 221 IHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 988765433333222222222233333333334444333333445578888887654
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=2.3e-25 Score=249.98 Aligned_cols=360 Identities=17% Similarity=0.199 Sum_probs=215.6
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC--CCceeeeccccc
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSSLFV 242 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~--~~~~~v~~~~~~ 242 (741)
.+...|++++|.+++++.+.+.+.. + ..+..+++|++|+||||||||++|+++|..++ ..|..+++
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~-~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~---- 98 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------I-KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG---- 98 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG----
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------H-HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH----
Confidence 3556789999999999999887753 1 12445668899999999999999999999998 67777665
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHH---HhcCCeEEEeccccccccccCCCC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA---RNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A---~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
+.+.++|.|+.+. +++.|..| ....|+||||||+|++++++....
T Consensus 99 -------------------------------~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~ 146 (456)
T 2c9o_A 99 -------------------------------SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENP 146 (456)
T ss_dssp -------------------------------GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-----
T ss_pred -------------------------------HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCC
Confidence 4555678888887 89999999 788999999999999999885542
Q ss_pred CCccHH-HHHH---------------HHHHHHhcc--CCCCCCCeEEEEeeCCCCCCCccccCCCccce--eeecCCCC-
Q psy11254 320 TSADRE-IQRT---------------LMELLNQMD--GFDSLGQVKMIMATNRPDTLDPALLRPGRLDR--KIEIPLPN- 378 (741)
Q Consensus 320 ~~lD~~-~~~~---------------l~~lL~~l~--~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~--~i~~~~p~- 378 (741)
.+.... ..+. ...++..++ +......+.|+++||+++.+|+++.|+||||+ .+.++.|+
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 147 MGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp ---------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred CCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 221111 1110 011333332 22222334445788999999999999999998 55666664
Q ss_pred -HHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhccccccc
Q psy11254 379 -EQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLD 457 (741)
Q Consensus 379 -~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~ 457 (741)
..+|.+| +..+.. .+++.++..+.| |+|+.++|...... ....+ ...
T Consensus 227 ~~~~R~~i---l~~~~~-------~dl~~~a~~t~g--gadl~~l~~~i~~p----~~~~I-----~~~----------- 274 (456)
T 2c9o_A 227 DVHKKKEI---IQDVTL-------HDLDVANARPQG--GQDILSMMGQLMKP----KKTEI-----TDK----------- 274 (456)
T ss_dssp CSEEEEEE---EEEEEH-------HHHHHTC-------------------------------------------------
T ss_pred hHHHHHHH---HHHHHH-------HHHHHHHHhCCC--hhHHHHHHhhhccc----chhhH-----HHH-----------
Confidence 4667777 332221 146666777777 77777776431000 00000 000
Q ss_pred ccCcchhccccccccccccccchhHHHHHHHhhccccccccccccccceeccCCChHHHHhcCCCCCCceEEEcCCCCCh
Q psy11254 458 HCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGK 537 (741)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GK 537 (741)
T Consensus 275 -------------------------------------------------------------------------------- 274 (456)
T 2c9o_A 275 -------------------------------------------------------------------------------- 274 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHH
Q psy11254 538 TLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616 (741)
Q Consensus 538 t~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~-~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~ 616 (741)
+.+ .-...+...++.+.. ..|.|+||||++.+. ....+.
T Consensus 275 --lr~------------------------~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~--------------~~a~~a 314 (456)
T 2c9o_A 275 --LRG------------------------EINKVVNKYIDQGIAELVPGVLFVDEVHMLD--------------IECFTY 314 (456)
T ss_dssp ----C------------------------HHHHHHHHHHHTTSEEEEECEEEEESGGGCB--------------HHHHHH
T ss_pred --HHH------------------------HHHHHHHHHHHhccccccceEEEEechhhcC--------------HHHHHH
Confidence 000 000001111111111 123599999999862 245677
Q ss_pred HHHHccCCCCCCCeEEEEeeCC-------------CCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCC
Q psy11254 617 LLNQMDGFDSLGQVKMIMATNR-------------PDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEI 683 (741)
Q Consensus 617 lL~~~~g~~~~~~v~vi~tTn~-------------~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~ 683 (741)
||..|+... ..+ +|++||. ++.++|.++. ||.. +.|++|+.++..+|++..+.. .+..+
T Consensus 315 Llk~lEe~~--~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~--~~~~~ 386 (456)
T 2c9o_A 315 LHRALESSI--API-VIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQT--EGINI 386 (456)
T ss_dssp HHHHTTSTT--CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHH--HTCCB
T ss_pred HHHHhhccC--CCE-EEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHH--hCCCC
Confidence 777777443 345 5545543 7788888987 9988 599999999999999987652 22346
Q ss_pred Cccccccccccc--ccchHHHHHHHhhhhhhhc-CCCcccHHHHHHHH
Q psy11254 684 GDAATKWVLPFT--AGGFIYIATVSVIPELLED-TSPKQTVKEILALL 728 (741)
Q Consensus 684 ~~~a~~~l~~~~--s~gf~~~a~~~~~~~l~~~-~~~~~s~~~i~~~l 728 (741)
++.+...+.... .+.+..+.....+..++.. .+..++.+++..++
T Consensus 387 ~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 387 SEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 666666555544 3444455555555445543 45578888888764
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.92 E-value=4.7e-25 Score=239.31 Aligned_cols=167 Identities=43% Similarity=0.725 Sum_probs=138.8
Q ss_pred eeccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCe
Q psy11254 506 IELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPC 585 (741)
Q Consensus 506 i~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~ 585 (741)
+.+|+.+++++.. +..++.+++|+||||||||++|+++|+.++.+++.++++++.++|+|+++..++.+|..++...||
T Consensus 67 v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 67 VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145 (355)
T ss_dssp THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSE
T ss_pred HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCe
Confidence 3455556666655 456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC-CCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHH
Q psy11254 586 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS-LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 586 Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~-~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
||||||+|.+.+.|..... ....++++++|..|+++.. ..+++||+|||+++.+|++++| ||+..++|++|+.+
T Consensus 146 vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 146 IIFIDQVDALTGTRGEGES---EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 220 (355)
T ss_dssp EEEEECGGGGTC------C---THHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred EEEEechHhhcccCCCCcc---hHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHH
Confidence 9999999999988754322 2346778889999988753 4679999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCcc
Q psy11254 665 ARLEILKIHAGPIA 678 (741)
Q Consensus 665 ~r~~i~~~~~~~~~ 678 (741)
+|.+||+.++....
T Consensus 221 ~r~~il~~~l~~~~ 234 (355)
T 2qp9_X 221 ARTTMFEINVGDTP 234 (355)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999988643
No 52
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=3.1e-24 Score=226.68 Aligned_cols=154 Identities=24% Similarity=0.329 Sum_probs=116.8
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHH----HhcCCeEEEEcccccc
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA----RNHQPCIIFMDEIDAI 595 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a----~~~~p~Vl~iDE~d~~ 595 (741)
+.+++.+++|+||||||||++|+++|+.++.+++.++++++.+.|+|+++..++.+|..| +...||||||||+|++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 467788999999999999999999999999999999999999999999999999999999 5678999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHccCC-----------CCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLNQMDGF-----------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~~~~g~-----------~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
++++...... .....++...|++.||+. ....+++||+|||+++.+|++++||||||..|++ |+.+
T Consensus 112 ~~~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 112 AGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred cCCCCCCccc-cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 8865322111 111234445555555532 2456799999999999999999999999999984 6999
Q ss_pred HHHHHHHHhhcC
Q psy11254 665 ARLEILKIHAGP 676 (741)
Q Consensus 665 ~r~~i~~~~~~~ 676 (741)
+|.+||+.++..
T Consensus 189 ~r~~Il~~~~~~ 200 (293)
T 3t15_A 189 DRIGVCTGIFRT 200 (293)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHhccC
Confidence 999999988763
No 53
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=3.2e-25 Score=231.15 Aligned_cols=218 Identities=36% Similarity=0.581 Sum_probs=161.2
Q ss_pred CChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 511 LNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 511 ~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
.+++.+..++...+.+++|+||||||||++|+++|+.++.+++.++++++...+.|.++..++.+|+.+....|+|||||
T Consensus 31 ~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iD 110 (268)
T 2r62_A 31 KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFID 110 (268)
T ss_dssp HCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEES
T ss_pred HChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35667778888889999999999999999999999999999999999999999999888888899999998899999999
Q ss_pred ccccccCCCCCCCC-cccHHHHHHHHHHHHHccCCCCC-CCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHH
Q psy11254 591 EIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDSL-GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLE 668 (741)
Q Consensus 591 E~d~~~~~r~~~~~-~~~~~~~~~l~~lL~~~~g~~~~-~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~ 668 (741)
|+|.+...+...+. ..+....+.++++|..+++.... .+++||+|||.++.+|++++|+|||+..++|++|+.++|.+
T Consensus 111 Eid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~ 190 (268)
T 2r62_A 111 EIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVE 190 (268)
T ss_dssp CGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHH
T ss_pred ChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHH
Confidence 99999877633211 11112234577888888887543 35899999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 669 ILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 669 i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
||+.++..+....+.+...+.......+++.+......++...+.+....++.+++..++
T Consensus 191 il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 250 (268)
T 2r62_A 191 ILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 250 (268)
T ss_dssp HHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSC
T ss_pred HHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 999998865543333322222222222333333333333322223335567888776543
No 54
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.90 E-value=2.9e-24 Score=239.91 Aligned_cols=166 Identities=41% Similarity=0.725 Sum_probs=135.4
Q ss_pred eccCCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHh-CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCe
Q psy11254 507 ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPC 585 (741)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~-~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~ 585 (741)
.+|+.++.++.. +..++.+++|+||||||||++|+++|.++ +.+|+.++++++.++|+|+++..++.+|..++...||
T Consensus 151 ~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 229 (444)
T 2zan_A 151 ILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229 (444)
T ss_dssp THHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSE
T ss_pred HHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCe
Confidence 345555555543 24567899999999999999999999999 8899999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC-CCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHH
Q psy11254 586 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS-LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 586 Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~-~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
||||||+|.+++.|...... ...++++++|..|+++.. ..+++||+|||+|+.+|++++| ||+..+++|+|+.+
T Consensus 230 vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 304 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH 304 (444)
T ss_dssp EEEESCTTTTCCCSSCCCCG---GGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHH
T ss_pred EEEEechHhhccCCCCcccc---HHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHH
Confidence 99999999999887554332 345788999999999753 5689999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCcc
Q psy11254 665 ARLEILKIHAGPIA 678 (741)
Q Consensus 665 ~r~~i~~~~~~~~~ 678 (741)
+|..||+.++....
T Consensus 305 ~r~~il~~~l~~~~ 318 (444)
T 2zan_A 305 ARAAMFRLHLGSTQ 318 (444)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999987643
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=8.7e-23 Score=232.45 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=117.4
Q ss_pred HhhccCCCh-HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----ccchh--h---------
Q psy11254 186 VIELPLLNP-ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FVTSK--E--------- 246 (741)
Q Consensus 186 ~i~~~~~~~-~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~~~~--~--------- 246 (741)
.+.+.|+.. .++.+++ .+.+| ++|+||||||||||+|+|+|.+.++.+.+.... .+.+. .
T Consensus 26 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 104 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104 (538)
T ss_dssp CEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTT
T ss_pred CcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHH
Confidence 344445443 2567777 78888 789999999999999999999988766531000 00000 0
Q ss_pred --------------------HHHH-HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 247 --------------------DMAI-LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 247 --------------------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
.+.. +.......++..+++.+++.......+.++|||++|++ ++++|+..+|+||+|
T Consensus 105 ~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv--~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRV--AIAAALLRNATFYFF 182 (538)
T ss_dssp SCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHH--HHHHHHHSCCSEEEE
T ss_pred hhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHH--HHHHHHhcCCCEEEE
Confidence 0000 00011123455667777887777888999999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|| |++++|+..+.++.+++..+.. .+.+||++||++++++..+
T Consensus 183 DE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~~~~~~~ 225 (538)
T 1yqt_A 183 DE----------PSSYLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLAVLDYLS 225 (538)
T ss_dssp ES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHHHHHC
T ss_pred EC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhC
Confidence 99 9999999999999999988864 3679999999988776443
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=216.57 Aligned_cols=214 Identities=31% Similarity=0.515 Sum_probs=158.0
Q ss_pred CCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
+.+++.+...+ .++.+++|+||||||||++|+++|..++.+++.++++++.+.|.|+++..++.+|..++...|+||||
T Consensus 104 ~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~i 182 (357)
T 3d8b_A 104 MLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFI 182 (357)
T ss_dssp HHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 33344443333 46788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCC--CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD--SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARL 667 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~--~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~ 667 (741)
||+|.+...|.... +....+++.++|..+++.. ...+++||+|||+++.+|++++| ||+..+++++|+.++|.
T Consensus 183 DEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 183 DEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257 (357)
T ss_dssp ETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred eCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHH
Confidence 99999988774332 2244678888999998864 24579999999999999999999 99999999999999999
Q ss_pred HHHHHhhcCccccCCCCcccccccccc---cccchHHHHHHHhhhhhhh------------cCCCcccHHHHHHHHHHH
Q psy11254 668 EILKIHAGPIAKHGEIGDAATKWVLPF---TAGGFIYIATVSVIPELLE------------DTSPKQTVKEILALLLGV 731 (741)
Q Consensus 668 ~i~~~~~~~~~~~~~~~~~a~~~l~~~---~s~gf~~~a~~~~~~~l~~------------~~~~~~s~~~i~~~l~g~ 731 (741)
+|++.++.... ..+++.....+... .+++.+......+.+.-+. .....++.+++..++..+
T Consensus 258 ~il~~~~~~~~--~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 258 QIVINLMSKEQ--CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 99999886532 12444443333322 2223333222222222221 234568888988887765
No 57
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=6.5e-22 Score=209.32 Aligned_cols=174 Identities=39% Similarity=0.685 Sum_probs=138.5
Q ss_pred CCChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 510 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
..+++++..++ .++.+++|+||||||||++|+++++.++.+++.++++++.+.+.|+++..++.+|..+....|+||||
T Consensus 41 ~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 119 (297)
T 3b9p_A 41 SVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFI 119 (297)
T ss_dssp HHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEe
Confidence 33444444443 45688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCC---CCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSL---GQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 666 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~---~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r 666 (741)
||+|.+...+........ .+..+++|..+++.... ++++||+|||+++.+|++++| ||+..+++++|+.++|
T Consensus 120 DEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 120 DEVDSLLSERSSSEHEAS---RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194 (297)
T ss_dssp ETGGGTSBCC-----CCS---HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHH
T ss_pred ccHHHhccccccCcchHH---HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHH
Confidence 999999887754332222 35566777777766543 579999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCccccCCCCccccccc
Q psy11254 667 LEILKIHAGPIAKHGEIGDAATKWV 691 (741)
Q Consensus 667 ~~i~~~~~~~~~~~~~~~~~a~~~l 691 (741)
..||+.++.... ..+++.....+
T Consensus 195 ~~il~~~~~~~~--~~~~~~~~~~l 217 (297)
T 3b9p_A 195 ELLLNRLLQKQG--SPLDTEALRRL 217 (297)
T ss_dssp HHHHHHHHGGGS--CCSCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHH
Confidence 999999887532 23444444433
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.6e-22 Score=226.76 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=112.8
Q ss_pred hHHHhhhCCCCC-CC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-------ccchhh-----------------
Q psy11254 194 PELFQRVGITPP-KG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-------FVTSKE----------------- 246 (741)
Q Consensus 194 ~~~~~~~~l~~~-~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-------~~~~~~----------------- 246 (741)
+.-|+-.+++.+ +| ++|+||||||||||+|+|+|.+.|+.+.+.... .+.+..
T Consensus 11 ~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp TTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred CCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 344666677776 46 789999999999999999999988877662100 000000
Q ss_pred --------------HHH-HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 247 --------------DMA-ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 247 --------------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+. .+.......++..+++.+++.......+.++|||++|++ ++++|+..+|+||+|||
T Consensus 91 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv--~iA~aL~~~p~illlDE---- 164 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRL--LVAASLLREADVYIFDQ---- 164 (538)
T ss_dssp ECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH--HHHHHHHSCCSEEEEES----
T ss_pred ccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC----
Confidence 000 001111123445566667777777888999999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. +.+||++||++++++..+
T Consensus 165 ------Pts~LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl~~~~~~~ 204 (538)
T 3ozx_A 165 ------PSSYLDVRERMNMAKAIRELLK-----NKYVIVVDHDLIVLDYLT 204 (538)
T ss_dssp ------TTTTCCHHHHHHHHHHHHHHCT-----TSEEEEECSCHHHHHHHC
T ss_pred ------CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEEeChHHHHhhC
Confidence 9999999999999999998852 579999999998776443
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=3.4e-22 Score=229.86 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=117.1
Q ss_pred HHhhccCCCh-HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-----ccchh--hH-------
Q psy11254 185 EVIELPLLNP-ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-----FVTSK--ED------- 247 (741)
Q Consensus 185 e~i~~~~~~~-~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-----~~~~~--~~------- 247 (741)
+.+.+.|+.. .++.+++ .+++| ++|+||||+|||||+|+|+|.+.++.+.+.... .+.+. .+
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 3455555544 2677788 78888 789999999999999999999988776631000 00000 00
Q ss_pred ----------------------HHH-HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 248 ----------------------MAI-LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 248 ----------------------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
+.. +.......++..+++.+++.......+.++|||++|++ +|++|+..+|+|||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv--aIAraL~~~P~lLl 251 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRV--AIAAALLRKAHFYF 251 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH--HHHHHHHSCCSEEE
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH--HHHHHHhcCCCEEE
Confidence 000 00001123445566677777777888999999999999 99999999999999
Q ss_pred eccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 305 lDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
||| |++++|+..+..+.+++..+.. .+.+||++||+++.++.
T Consensus 252 LDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 252 FDE----------PSSYLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp EEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHHHH
T ss_pred EEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEecChHHHHh
Confidence 999 9999999999999999998853 36799999999887653
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=215.54 Aligned_cols=159 Identities=41% Similarity=0.712 Sum_probs=124.9
Q ss_pred ChHHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 512 NPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 512 ~~~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
+++++..++ .++.++||+||||||||++|+++|..++.+|+.++++++.+.|+|+++..++.+|..++...|+||||||
T Consensus 137 ~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDE 215 (389)
T 3vfd_A 137 RPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ 215 (389)
T ss_dssp CTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEET
T ss_pred CHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 333333443 3568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC--CCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS--LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~--~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
+|.++..+...... ...+++.++|..+++... ..+++||+|||+++.+|++++| ||+..|+|+.|+.++|.+|
T Consensus 216 id~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~i 290 (389)
T 3vfd_A 216 VDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLL 290 (389)
T ss_dssp GGGGC--------C---THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHH
T ss_pred chhhcccCCCccch---HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHH
Confidence 99998877433222 345677788888887654 3579999999999999999999 9999999999999999999
Q ss_pred HHHhhcC
Q psy11254 670 LKIHAGP 676 (741)
Q Consensus 670 ~~~~~~~ 676 (741)
|+.++..
T Consensus 291 l~~~~~~ 297 (389)
T 3vfd_A 291 LKNLLCK 297 (389)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998875
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=1.4e-21 Score=206.40 Aligned_cols=178 Identities=24% Similarity=0.371 Sum_probs=128.2
Q ss_pred CCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhh
Q psy11254 201 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKY 280 (741)
Q Consensus 201 ~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 280 (741)
+...|+|++|+||||||||+|+++||..++.++..++. +.+.+.|
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~-----------------------------------~~l~~~~ 76 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSA-----------------------------------GELESGN 76 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH-----------------------------------HHHHCC-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH-----------------------------------HHhhhcc
Confidence 56788899999999999999999999999999988875 4455678
Q ss_pred cchHHHHHHHHHHHH----HhcCCeEEEeccccccccccCCCCC--CccHHHHHHHHHHHHhcc--------CCCCCCCe
Q psy11254 281 IGESARLIREMFNYA----RNHQPCIIFMDEIDAIGGRRFSEGT--SADREIQRTLMELLNQMD--------GFDSLGQV 346 (741)
Q Consensus 281 ~G~~~~~v~~~~~~A----~~~~P~ILllDEid~l~~~~~~p~~--~lD~~~~~~l~~lL~~l~--------~~~~~~~v 346 (741)
.|..++.++..|..| ....|+||||||+|++++.+.+.+. ..+......|.+++.... ......++
T Consensus 77 ~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v 156 (293)
T 3t15_A 77 AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARV 156 (293)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCC
T ss_pred CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCc
Confidence 899999999999988 4778999999999999885532211 123344556666654221 11234679
Q ss_pred EEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHH
Q psy11254 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNV 422 (741)
Q Consensus 347 ~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l 422 (741)
.||+|||+++.+|++++|+||||..+.+ |+.++|.+| +..+.. ..+++...++..+.+|+++++..+
T Consensus 157 ~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~r~~I---l~~~~~----~~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 157 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV---CTGIFR----TDNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp CEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHHHHHH---HHHHHG----GGCCCHHHHHHHHHHSCSCCHHHH
T ss_pred EEEEecCCcccCCHHHhCCCCCceeEeC--cCHHHHHHH---HHHhcc----CCCCCHHHHHHHhCCCCcccHHHH
Confidence 9999999999999999999999998874 699999988 443322 346788999999999999998754
No 62
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=6.8e-21 Score=209.23 Aligned_cols=168 Identities=23% Similarity=0.268 Sum_probs=79.5
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCC-CCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGIT-PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~-~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
.+|+|+++.|+.|...+..++.++.++..+... .++|++|+|||||||||+++++|+.++.+|..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~---------- 84 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT---------- 84 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG----------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch----------
Confidence 468999999999999998777666666655444 346799999999999999999999999999888652
Q ss_pred HHhhhhhhhcccccccccccCCCccchhh-hhcch-HHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVD-KYIGE-SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~G~-~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
.+.. .|+|. .+..++.+|..|... +++||++.+.... . .....
T Consensus 85 -------------------------~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~---~---~~~e~ 129 (444)
T 1g41_A 85 -------------------------KFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA---E---DVAEE 129 (444)
T ss_dssp -------------------------GGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC---------------
T ss_pred -------------------------hhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc---h---hhHHH
Confidence 2223 47774 678888888888764 3489988875432 1 12235
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEe-eCCCCCCCccccCCCccceeeecCCCCHH-HHHhc
Q psy11254 328 RTLMELLNQMDGFDSLGQVKMIMA-TNRPDTLDPALLRPGRLDRKIEIPLPNEQ-ARLAH 385 (741)
Q Consensus 328 ~~l~~lL~~l~~~~~~~~v~vI~a-t~~~~~ld~al~r~gr~d~~i~~~~p~~~-~r~~i 385 (741)
+.+..++..|+++.+..++ +++ ||+++.+|++++|+||||+.|+++.|+.. .|.+|
T Consensus 130 rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei 187 (444)
T 1g41_A 130 RILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEI 187 (444)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhh
Confidence 7778888889887655444 444 99999999999999999999999999976 55554
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.4e-21 Score=218.85 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=109.2
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-------ccchhh---------------------------
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-------FVTSKE--------------------------- 246 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-------~~~~~~--------------------------- 246 (741)
.+.+| ++|+||||+|||||+|+|+|.+.++.+++.... ++.+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 45667 789999999999999999999998887762110 000000
Q ss_pred -------HHHHHhh---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 247 -------DMAILMG---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 247 -------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
.+..... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.||+|||
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv--~iAraL~~~p~llllDE--------- 247 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF--AIGMSCVQEADVYMFDE--------- 247 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH--HHHHHHHSCCSEEEEEC---------
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH--HHHHHHHhCCCEEEEEC---------
Confidence 0000000 01123455667777887778889999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPA 361 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~a 361 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+...
T Consensus 248 -Pts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHdl~~~~~~ 287 (608)
T 3j16_B 248 -PSSYLDVKQRLNAAQIIRSLLA----PTKYVICVEHDLSVLDYL 287 (608)
T ss_dssp -TTTTCCHHHHHHHHHHHHGGGT----TTCEEEEECSCHHHHHHH
T ss_pred -cccCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHh
Confidence 9999999999999999998864 356899999999877643
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=1.3e-20 Score=223.89 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=111.9
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHH-hcC-CC---ceeeec-c-c------ccchhhHHHHH
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVAS-QLD-AN---FLKVVS-S-L------FVTSKEDMAIL 251 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~-~l~-~~---~~~v~~-~-~------~~~~~~~~~~~ 251 (741)
+.+.|++..++++++|++++| ++|+||||||||||+|+|+| .+. .+ ...+.. . . ..+..+.+..
T Consensus 441 ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~- 519 (986)
T 2iw3_A 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE- 519 (986)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT-
T ss_pred EEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH-
Confidence 445566667899999999999 78999999999999999995 220 00 001100 0 0 0111111111
Q ss_pred hhhhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHH
Q psy11254 252 MGNQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 330 (741)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l 330 (741)
.......++...++.+++. ......+..+|||+++++ .|++|+..+|.|||||| |++++|+..+.++
T Consensus 520 ~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRv--aLArAL~~~P~lLLLDE----------PTs~LD~~~~~~l 587 (986)
T 2iw3_A 520 SGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL--ALARAVLRNADILLLDE----------PTNHLDTVNVAWL 587 (986)
T ss_dssp TCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHH--HHHHHHHTTCSEEEEES----------TTTTCCHHHHHHH
T ss_pred hhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEEEC----------CccCCCHHHHHHH
Confidence 0000033455667777774 445778899999999999 99999999999999999 9999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 331 MELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 331 ~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.+++.. . +.++|++||+++++...+
T Consensus 588 ~~~L~~-~------g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 588 VNYLNT-C------GITSITISHDSVFLDNVC 612 (986)
T ss_dssp HHHHHH-S------CSEEEEECSCHHHHHHHC
T ss_pred HHHHHh-C------CCEEEEEECCHHHHHHhC
Confidence 999987 2 458999999988876443
No 65
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2.5e-20 Score=212.84 Aligned_cols=289 Identities=19% Similarity=0.273 Sum_probs=179.0
Q ss_pred EEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccCCCC------CCCcccccChHHHHH
Q psy11254 108 IVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG------DITYSAIGGLSEQIR 181 (741)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Gl~~~k~ 181 (741)
.++....|+.+ .....+++++...+...+.+..+.++|.+|+..+||.....+.. ...+.+++|++++++
T Consensus 16 ~~~~~~~~~~~----~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~ 91 (543)
T 3m6a_A 16 KIEEAGMPDHV----KETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKE 91 (543)
T ss_dssp HHHSSSCCCHH----HHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHH
T ss_pred HHHhCCCCHHH----HHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHH
Confidence 44555666665 44555677888888888899999999999999999987655433 234577999999999
Q ss_pred HHHHHhhccCCChHHHhhhCCCCCC-CceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcc
Q psy11254 182 ELREVIELPLLNPELFQRVGITPPK-GCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRS 260 (741)
Q Consensus 182 ~i~e~i~~~~~~~~~~~~~~l~~~~-GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 260 (741)
.+.+.+.+ ..+++..+. .++|+||||||||||+|+|++.++++++.+....... ...+.
T Consensus 92 ~i~~~~~l--------~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~----~~~~~-------- 151 (543)
T 3m6a_A 92 RILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD----ESEIR-------- 151 (543)
T ss_dssp HHHHHHHH--------HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHH--------HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch----hhhhh--------
Confidence 99887654 334444432 3889999999999999999999999998887532111 11111
Q ss_pred cccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc--
Q psy11254 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD-- 338 (741)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~-- 338 (741)
.....|.|...+.+...|..|...+| ||||||+|++...+.+. .+..|.+++....
T Consensus 152 --------------g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~-------~~~~LL~~ld~~~~~ 209 (543)
T 3m6a_A 152 --------------GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD-------PSSAMLEVLDPEQNS 209 (543)
T ss_dssp --------------------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTT
T ss_pred --------------hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC-------HHHHHHHHHhhhhcc
Confidence 11235677777778778888877777 99999999997643211 1122333332111
Q ss_pred CCC--------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC-------CC-cccCCC
Q psy11254 339 GFD--------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG-------PI-AKHGEI 402 (741)
Q Consensus 339 ~~~--------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~-------~~-~~~~~~ 402 (741)
.+. ...++.+|+|||.++.+++++++ ||+ .+.++.|+..++..| +..+.. .. ...-.+
T Consensus 210 ~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~I---l~~~l~~~~~~~~~~~~~~i~i 283 (543)
T 3m6a_A 210 SFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEI---VKDHLLPKQIKEHGLKKSNLQL 283 (543)
T ss_dssp BCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHH---HHHTHHHHHHHHTTCCGGGCEE
T ss_pred eeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHH---HHHHHHHHHHHHcCCCcccccC
Confidence 000 11568999999999999999998 995 789999999999887 333220 01 001122
Q ss_pred CHHHH---HH-hcCCCCH----HHHHHHHHHHHHHHHhhh--ccccchHhHHHHHH
Q psy11254 403 DYEAV---VK-LSDSFNG----ADLRNVCTEAGLFAIRSE--REYVTQEDFMKAVR 448 (741)
Q Consensus 403 ~~~~l---a~-~t~g~~g----adi~~l~~~A~~~a~~~~--~~~i~~~d~~~a~~ 448 (741)
+.+.+ +. .+...+. +.+..+|+.++...++.. ...++.+++...+.
T Consensus 284 ~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 284 RDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp CHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred CHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhC
Confidence 33333 32 2322333 455666666666555432 23567777766654
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=3.3e-19 Score=209.26 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=66.8
Q ss_pred ccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCe--EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCC
Q psy11254 264 LEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPC--IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF 340 (741)
Q Consensus 264 l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~--ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~ 340 (741)
++.+++... ....+..+|||++|++ .+++|+..+|+ |||||| |++++|+..+.++.+++..+..
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv--~iArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRI--RLATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHH--HHHHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHH--HHHHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHHH-
Confidence 334454432 4677899999999999 99999999988 999999 9999999999999999998864
Q ss_pred CCCCCeEEEEeeCCCCCC
Q psy11254 341 DSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 341 ~~~~~v~vI~at~~~~~l 358 (741)
.+.+||++||+++.+
T Consensus 253 ---~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 253 ---LGNTLIVVEHDEDTM 267 (670)
T ss_dssp ---TTCEEEEECCCHHHH
T ss_pred ---cCCEEEEEeCCHHHH
Confidence 367999999998754
No 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=1.6e-19 Score=187.74 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=124.2
Q ss_pred hccCCC-hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 188 ELPLLN-PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 188 ~~~~~~-~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
.+.|.+ ..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++......
T Consensus 14 s~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 14 NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93 (275)
T ss_dssp EEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSG
T ss_pred EEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCc
Confidence 334433 34899999999999 78999999999999999999999887777532110
Q ss_pred -------chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 243 -------TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 243 -------~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+..+++.+.. ......++..+++.+++.......+.++|||++|++ ++++|+..+|.|||+||
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv--~iAraL~~~P~lLlLDE-- 169 (275)
T 3gfo_A 94 DNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV--AIAGVLVMEPKVLILDE-- 169 (275)
T ss_dssp GGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHTTCCSEEEEEC--
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEEC--
Confidence 1111222211 112234566777888887777889999999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+...+
T Consensus 170 --------Pts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~~~~~ 211 (275)
T 3gfo_A 170 --------PTAGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIVPLYC 211 (275)
T ss_dssp --------TTTTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSGGGGC
T ss_pred --------ccccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHHHHhC
Confidence 9999999999999999988852 12679999999999876433
No 68
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.77 E-value=2.1e-19 Score=185.67 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=121.5
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++......
T Consensus 15 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred EEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 3445556899999999999 77999999999999999999999887777542110
Q ss_pred ---chhhHHHHHhhh-------------------hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCC
Q psy11254 243 ---TSKEDMAILMGN-------------------QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQP 300 (741)
Q Consensus 243 ---~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P 300 (741)
+..+++...... ....++..+++.+++.......+.++|||++|++ ++++|+..+|
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv--~iAraL~~~p 172 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV--EIGRALMTNP 172 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHHTCC
T ss_pred CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH--HHHHHHHcCC
Confidence 111122111000 0112344566667777667788999999999999 9999999999
Q ss_pred eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 301 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 301 ~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
.||++|| |++++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 173 ~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~~~~~ 220 (257)
T 1g6h_A 173 KMIVMDE----------PIAGVAPGLAHDIFNHVLELKA----KGITFLIIEHRLDIVLNYI 220 (257)
T ss_dssp SEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCCSTTGGGC
T ss_pred CEEEEeC----------CccCCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHHHhC
Confidence 9999999 9999999999999999998853 3679999999999876433
No 69
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.77 E-value=7.2e-20 Score=183.39 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=122.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc---------------------cch
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---------------------VTS 244 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~---------------------~~~ 244 (741)
.+.+.+ .++++++|++++| ++|+||||||||||+|+|+|.+.+..+++..... .+.
T Consensus 17 s~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv 95 (214)
T 1sgw_A 17 SVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISV 95 (214)
T ss_dssp EEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBH
T ss_pred EEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCH
Confidence 344555 7899999999999 7799999999999999999999988777753210 112
Q ss_pred hhHHHHHhh----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 245 KEDMAILMG----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 245 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+++..... .....++..+++.+++... ...+..+|||++|++ ++++|+..+|.+|+||| |++
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv--~laraL~~~p~lllLDE----------Pts 162 (214)
T 1sgw_A 96 EDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRV--QLASTLLVNAEIYVLDD----------PVV 162 (214)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH--HHHHHTTSCCSEEEEES----------TTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH--HHHHHHHhCCCEEEEEC----------CCc
Confidence 223332211 1112345567777888766 788999999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCcccc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 363 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~ 363 (741)
++|+..+..+.+++.++.. .+.+||++||+++.+...+.
T Consensus 163 ~LD~~~~~~l~~~l~~~~~----~g~tiiivtHd~~~~~~~~d 201 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILK----EKGIVIISSREELSYCDVNE 201 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHH----HHSEEEEEESSCCTTSSEEE
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999988753 24689999999998865443
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=7.4e-20 Score=205.19 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=114.6
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHhC--ccEEEEechhhhccccchHHHHHHHHHHHH---HhcCCeEEEEccccc
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQLD--ANFLKVVSSAIVDKYIGESARLIREMFNYA---RNHQPCIIFMDEIDA 594 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~--~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a---~~~~p~Vl~iDE~d~ 594 (741)
+..++.+++|+||||||||++|+++|+.++ .+|+.++++++.++|+|+++. ++.+|..| +...||||||||+|+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhh
Confidence 455678999999999999999999999999 899999999999999999998 99999999 778899999999999
Q ss_pred ccCCCCCCCCcccH-HHH---------------HHHHHHHHHcc--CCCCCCCeEEEEeeCCCCCCCccccCCCCcce--
Q psy11254 595 IGGRRFSEGTSADR-EIQ---------------RTLMELLNQMD--GFDSLGQVKMIMATNRPDTLDPALLRPGRLDR-- 654 (741)
Q Consensus 595 ~~~~r~~~~~~~~~-~~~---------------~~l~~lL~~~~--g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~-- 654 (741)
++++|.....+... ... ++..++++.++ ++...+.++|++|||+++.+|+++.||||||+
T Consensus 138 l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~ 217 (456)
T 2c9o_A 138 LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEA 217 (456)
T ss_dssp EEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSS
T ss_pred cccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcce
Confidence 99988654322111 111 12234566664 44444456667899999999999999999999
Q ss_pred EEEcCCCCH--HHHHHHHH
Q psy11254 655 KIEIPLPNE--QARLEILK 671 (741)
Q Consensus 655 ~i~~~~p~~--~~r~~i~~ 671 (741)
.+++|.|+. ++|.+|++
T Consensus 218 ~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 218 EEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp SSEECCCCSCSEEEEEEEE
T ss_pred eEecCCCchhHHHHHHHHH
Confidence 667777754 44444443
No 71
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.77 E-value=1.2e-19 Score=183.62 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=120.3
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+....++++++|++++| ++|+||||||||||+|+|+|.+.+..+++......
T Consensus 12 ~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred EEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 3445566899999999999 77999999999999999999999887777542110
Q ss_pred ------chhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 243 ------TSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 243 ------~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
+..+++.... + .....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|++||
T Consensus 92 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~laral~~~p~lllLDE--- 166 (224)
T 2pcj_A 92 YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRV--AIARALANEPILLFADE--- 166 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH--HHHHHTTTCCSEEEEES---
T ss_pred ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC---
Confidence 1111222211 0 11233456677778887777888999999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+
T Consensus 167 -------Pt~~LD~~~~~~~~~~l~~l~~----~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 167 -------PTGNLDSANTKRVMDIFLKINE----GGTSIVMVTHERELA 203 (224)
T ss_dssp -------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHH
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHH
Confidence 9999999999999999988854 267999999987643
No 72
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.77 E-value=7.2e-20 Score=189.83 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=123.7
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV----------------------- 242 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~----------------------- 242 (741)
.+.+....++++++|++++| ++|+||||||||||+|+|+|.+.+..|++......
T Consensus 18 ~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (266)
T 4g1u_C 18 HYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97 (266)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCC
T ss_pred EEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccC
Confidence 34556677899999999999 78999999999999999999999888777543110
Q ss_pred ---chhhHHHHHh----hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc------CCeEEEecccc
Q psy11254 243 ---TSKEDMAILM----GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH------QPCIIFMDEID 309 (741)
Q Consensus 243 ---~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~------~P~ILllDEid 309 (741)
+..+++.... ......++..+++.+++.......+.++|||++|++ ++++|+.. +|.+||+||
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv--~iAraL~~~~~~~~~p~lLllDE-- 173 (266)
T 4g1u_C 98 FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRV--QLARVLAQLWQPQPTPRWLFLDE-- 173 (266)
T ss_dssp SCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHH--HHHHHHHHTCCSSCCCEEEEECC--
T ss_pred CCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHhcccccCCCCCEEEEeC--
Confidence 1111111111 012234456677777877777888999999999999 99999999 999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++..+.. .++.+||++||+++.+..
T Consensus 174 --------Pts~LD~~~~~~i~~~l~~l~~---~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 174 --------PTSALDLYHQQHTLRLLRQLTR---QEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp --------CCSSCCHHHHHHHHHHHHHHHH---HSSEEEEEECSCHHHHHH
T ss_pred --------ccccCCHHHHHHHHHHHHHHHH---cCCCEEEEEEcCHHHHHH
Confidence 9999999999999999988854 346799999999886643
No 73
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=2.4e-19 Score=184.78 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=121.2
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
+.+....++++++|++++| ++|+||||||||||+|+|+|.+.+..+++.....
T Consensus 23 ~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ 102 (256)
T 1vpl_A 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 102 (256)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred EEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCC
Confidence 3445566899999999999 7799999999999999999999988777753211
Q ss_pred cchhhHHHHHh---h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM---G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.... + .....++..+++.+++.......+..+|||++|++ ++++|+..+|.||||||
T Consensus 103 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv--~lAraL~~~p~lllLDE-------- 172 (256)
T 1vpl_A 103 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL--LIARALMVNPRLAILDE-------- 172 (256)
T ss_dssp SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH--HHHHHHTTCCSEEEEES--------
T ss_pred CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC--------
Confidence 01122332211 1 11123455677777877767788999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 173 --Pts~LD~~~~~~l~~~l~~l~~----~g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 173 --PTSGLDVLNAREVRKILKQASQ----EGLTILVSSHNMLEVE 210 (256)
T ss_dssp --TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEEECCHHHHT
T ss_pred --CccccCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHHHHH
Confidence 9999999999999999988853 3579999999987654
No 74
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.76 E-value=2e-19 Score=185.90 Aligned_cols=156 Identities=17% Similarity=0.266 Sum_probs=121.8
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------- 241 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------- 241 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+.++.|++.....
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 3344556899999999999 7799999999999999999999988777753211
Q ss_pred ---cchhhHHHHHh----h---hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccc
Q psy11254 242 ---VTSKEDMAILM----G---NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311 (741)
Q Consensus 242 ---~~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l 311 (741)
.+..+++.... + .....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|++||
T Consensus 112 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv--~lAraL~~~p~lllLDE---- 185 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV--AIARALAMEPKIMLFDE---- 185 (263)
T ss_dssp CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES----
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH--HHHHHHHCCCCEEEEeC----
Confidence 01112222211 0 11223456677778887777888999999999999 99999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 312 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 312 ~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++.++.. .+.+||++||+++.+..
T Consensus 186 ------Pts~LD~~~~~~~~~~l~~l~~----~g~tvi~vtHd~~~~~~ 224 (263)
T 2olj_A 186 ------PTSALDPEMVGEVLSVMKQLAN----EGMTMVVVTHEMGFARE 224 (263)
T ss_dssp ------TTTTSCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHHHH
T ss_pred ------CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHHHHHH
Confidence 9999999999999999998853 26799999999876643
No 75
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.76 E-value=9.6e-20 Score=196.53 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=127.5
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------ 240 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------ 240 (741)
+.+.|+...++++++|++++| ++|+||||||||||+|+|+|.+.++.|++....
T Consensus 9 l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 9 VTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred EEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 344566677899999999999 779999999999999999999999888775321
Q ss_pred ccchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 241 FVTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 241 ~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
..+..+++.+.. .....+++..+++.+++.......+.++|||++|++ ++++|+..+|.||||||
T Consensus 89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV--aiArAL~~~P~lLLLDE------- 159 (381)
T 3rlf_A 89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV--AIGRTLVAEPSVFLLDE------- 159 (381)
T ss_dssp TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH--HHHHHHHHCCSEEEEES-------
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH--HHHHHHHcCCCEEEEEC-------
Confidence 012233443321 123345677788888888888899999999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..++++|++||+++++.
T Consensus 160 ---Pts~LD~~~~~~l~~~l~~l~~---~~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 160 ---PLSNLDAALRVQMRIEISRLHK---RLGRTMIYVTHDQVEAM 198 (381)
T ss_dssp ---TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEECSCHHHHH
T ss_pred ---CCcCCCHHHHHHHHHHHHHHHH---hCCCEEEEEECCHHHHH
Confidence 9999999999999999988753 23679999999987654
No 76
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.75 E-value=1.1e-19 Score=194.83 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=124.3
Q ss_pred hhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 187 IELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+.|+...++++++|++++| ++|+||||||||||+|+|+|.+.++.|++.....
T Consensus 10 ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence 344566677899999999999 7799999999999999999999998777753211
Q ss_pred -----cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccc
Q psy11254 242 -----VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310 (741)
Q Consensus 242 -----~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~ 310 (741)
.+..+++.+.. .....+++..+++.+++.......+.++|||++|++ ++++|+..+|.||||||
T Consensus 90 ~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV--alArAL~~~P~lLLLDE--- 164 (359)
T 3fvq_A 90 VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA--ALARALAPDPELILLDE--- 164 (359)
T ss_dssp CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES---
T ss_pred cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC---
Confidence 11122333211 122345667788888888888889999999999999 99999999999999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+.+..+.. ..++++|++||+.+++.
T Consensus 165 -------Pts~LD~~~r~~l~~~l~~~~~---~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 165 -------PFSALDEQLRRQIREDMIAALR---ANGKSAVFVSHDREEAL 203 (359)
T ss_dssp -------TTTTSCHHHHHHHHHHHHHHHH---HTTCEEEEECCCHHHHH
T ss_pred -------CcccCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHHHH
Confidence 9999999999999876665532 24679999999987654
No 77
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=2e-19 Score=185.13 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=121.3
Q ss_pred ccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecc-----c--------ccchhhHHHHHh
Q psy11254 189 LPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSS-----L--------FVTSKEDMAILM 252 (741)
Q Consensus 189 ~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~-----~--------~~~~~~~~~~~~ 252 (741)
+.+. +..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++... . ..+..+++....
T Consensus 12 ~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 12 FYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp EEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred EEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 3344 456889999999999 77999999999999999999999888877321 0 112223333221
Q ss_pred h----------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCc
Q psy11254 253 G----------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 253 ~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
. .....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|+||| |++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~~~p~lllLDE----------Pts~L 159 (253)
T 2nq2_C 92 STHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI--LIARAIASECKLILLDE----------PTSAL 159 (253)
T ss_dssp GGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHHTTCSEEEESS----------SSTTS
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC----------CcccC
Confidence 0 11123456677777877767788999999999999 99999999999999999 99999
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|+..+..+.+++..+.. ..+.+||++||+++.+.
T Consensus 160 D~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp CHHHHHHHHHHHHHHHH---TSCCEEEEEESCHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHH
Confidence 99999999999988753 23679999999987664
No 78
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.75 E-value=2.8e-19 Score=191.77 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=124.5
Q ss_pred hccC-CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 188 ELPL-LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 188 ~~~~-~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
.+.+ ++..++++++|++++| ++|+||||||||||+|+|+|.+.++.+++.....
T Consensus 21 ~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 21 EKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp EECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred EEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 3445 5556889999999999 7799999999999999999999988777743210
Q ss_pred -cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 242 -VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 242 -~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
.+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.||||||
T Consensus 101 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv--alArAL~~~P~lLLLDE------- 171 (355)
T 1z47_A 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV--ALARALAPRPQVLLFDE------- 171 (355)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES-------
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHHcCCCEEEEeC-------
Confidence 122234443211 12245667788888888777889999999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+++.+.
T Consensus 172 ---P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 172 ---PFAAIDTQIRRELRTFVRQVHD---EMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp ---TTCCSSHHHHHHHHHHHHHHHH---HHTCEEEEECSCHHHHH
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEECCCHHHHH
Confidence 9999999999999999988753 23579999999987654
No 79
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.75 E-value=3.8e-19 Score=190.62 Aligned_cols=152 Identities=19% Similarity=0.251 Sum_probs=123.2
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------------c
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-----------------------------V 242 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~-----------------------------~ 242 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.++.|++..... .
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 35789999999999 7899999999999999999999998887754211 1
Q ss_pred chhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 243 TSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..+++.+.. ......++..+++.+++.......+.++|||++|++ ++++|+..+|.|||+||
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRV--aIArAL~~~P~lLLlDE--------- 189 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV--AIARALASNPKVLLCDQ--------- 189 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHH--HHHHHTTTCCSEEEEES---------
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEEC---------
Confidence 1122333221 122345667788888888888889999999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|+..+..+.+++..+.. ..+++||++||+++.+..
T Consensus 190 -PTs~LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 190 -ATSALDPATTRSILELLKDINR---RLGLTILLITHEMDVVKR 229 (366)
T ss_dssp -TTTTSCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHHHHHH
T ss_pred -CCccCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHHHHHH
Confidence 9999999999999999998863 246799999999887643
No 80
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.74 E-value=2.9e-19 Score=185.10 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=120.7
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+++..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++......
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 3445556899999999999 77999999999999999999999887777432110
Q ss_pred ---------------chhhHHHHHh----h---hhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcC
Q psy11254 243 ---------------TSKEDMAILM----G---NQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQ 299 (741)
Q Consensus 243 ---------------~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~ 299 (741)
+..+++.... + .....++..+++.+++... ....+.++|||++|++ ++++|+..+
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv--~lAraL~~~ 171 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV--SIARALAME 171 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH--HHHHHHHTC
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH--HHHHHHhcC
Confidence 1111222211 0 1122345567777787766 6788999999999999 999999999
Q ss_pred CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 300 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 300 P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|.|||+|| |++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 172 p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~----~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 172 PDVLLFDE----------PTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGFAR 217 (262)
T ss_dssp CSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH----TTCCEEEECSCHHHHH
T ss_pred CCEEEEeC----------CCccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH
Confidence 99999999 9999999999999999988853 2668999999987664
No 81
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.74 E-value=4.4e-19 Score=220.51 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=96.1
Q ss_pred cCCChHHHHhcC---CCCCCceEEEcCCCCChHHHHHHHHHHhCc---c--EEEEec--hhhh--------ccccch---
Q psy11254 509 PLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVASQLDA---N--FLKVVS--SAIV--------DKYIGE--- 567 (741)
Q Consensus 509 ~~~~~~~~~~~~---~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~---~--~~~v~~--~~l~--------~~~~g~--- 567 (741)
+..-..+-.-+| ++.++.+++|||||||||++|++++.+... + |+.+.. .+++ ++|+++
T Consensus 1064 ~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~ 1143 (1706)
T 3cmw_A 1064 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 1143 (1706)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCS
T ss_pred ccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhcccc
Confidence 333444444454 455566999999999999999999987743 3 444432 2333 778888
Q ss_pred -HHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC---CCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC
Q psy11254 568 -SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS---EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 639 (741)
Q Consensus 568 -s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~---~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~ 639 (741)
+++.++.+|..||...||++|+||+|++.+.+.. .+........|+++++|.+|++.....+|+|| +||+.
T Consensus 1144 ~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1144 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred chHHHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9999999999999999999999999999988532 12111134567899999999997766788777 77764
No 82
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.74 E-value=8.3e-19 Score=178.69 Aligned_cols=148 Identities=16% Similarity=0.270 Sum_probs=114.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------------c
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------------V 242 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------------~ 242 (741)
.++++++|++++| ++|+||||||||||+|+|+|.+.+..|++..... .
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 4789999999999 7899999999999999999999998888754321 0
Q ss_pred chhhHHHHHh---------hhhhhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccc
Q psy11254 243 TSKEDMAILM---------GNQLKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312 (741)
Q Consensus 243 ~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~ 312 (741)
+..+++.... ......++...++.+++... ....+.++|||++|++ ++++|+..+|.+||+||
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv--~iAral~~~p~llllDE----- 171 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV--AIARALANNPPIILADQ----- 171 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES-----
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC-----
Confidence 1111222211 01122334556666776654 3678899999999999 99999999999999999
Q ss_pred cccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 313 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 313 ~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.
T Consensus 172 -----Pts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHd~~~ 208 (235)
T 3tif_A 172 -----PTWALDSKTGEKIMQLLKKLNE---EDGKTVVVVTHDINV 208 (235)
T ss_dssp -----TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEECSCHHH
T ss_pred -----CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEcCCHHH
Confidence 9999999999999999988853 236799999999863
No 83
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.74 E-value=2.9e-19 Score=192.13 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=123.8
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+++..++++++|++++| ++|+||||||||||+|+|+|.+.++.+++.....
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 34455566889999999999 7799999999999999999999988777753210
Q ss_pred cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.+.. ......++..+++.+++.......+.++|||++|++ ++++|+..+|.+|||||
T Consensus 90 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv--alArAL~~~P~lLLLDE-------- 159 (359)
T 2yyz_A 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV--ALARALVKQPKVLLFDE-------- 159 (359)
T ss_dssp SCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES--------
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 11223333321 112234566778888888777888999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+.+++.
T Consensus 160 --P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 160 --PLSNLDANLRMIMRAEIKHLQQ---ELGITSVYVTHDQAEAM 198 (359)
T ss_dssp --TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEEESCHHHHH
T ss_pred --CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHH
Confidence 9999999999999999988753 23579999999987654
No 84
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.74 E-value=1.2e-18 Score=181.02 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=118.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKED 247 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~ 247 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++..... .+..++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 35889999999999 7799999999999999999999888777743210 011112
Q ss_pred HHHHhh-----hhhhhcccccccccccC--CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 248 MAILMG-----NQLKRRSTHHLEKTYFP--FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 248 ~~~~~~-----~~~~~~~~~~l~~~~~~--~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
+..... .....++..+++.+++. ......+.++|||++|++ ++++|+..+|.||+||| |++
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv--~lAraL~~~p~lllLDE----------Pts 167 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDE----------PLV 167 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES----------TTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH--HHHHHHHcCCCEEEEcC----------ccc
Confidence 222110 01122345567777776 666788899999999999 99999999999999999 999
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
++|+..+..+.+++..+.. .+.+||++||+++.+...+
T Consensus 168 ~LD~~~~~~l~~~l~~l~~----~g~tii~vtHd~~~~~~~~ 205 (266)
T 2yz2_A 168 GLDREGKTDLLRIVEKWKT----LGKTVILISHDIETVINHV 205 (266)
T ss_dssp TCCHHHHHHHHHHHHHHHH----TTCEEEEECSCCTTTGGGC
T ss_pred cCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHhC
Confidence 9999999999999998853 2569999999999876433
No 85
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=2.7e-19 Score=183.05 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=116.7
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++......
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 93 (240)
T 1ji0_A 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred EEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccC
Confidence 3444556889999999999 77999999999999999999998887777542110
Q ss_pred ---chhhHHHHHh--h---hhhhhccccccccc-ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 243 ---TSKEDMAILM--G---NQLKRRSTHHLEKT-YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 243 ---~~~~~~~~~~--~---~~~~~~~~~~l~~~-~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+..+++.... . .....++..+++.+ ++.......+.++|||++|++ ++++|+..+|.+|+|||
T Consensus 94 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~~~p~lllLDE------ 165 (240)
T 1ji0_A 94 PELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML--AIGRALMSRPKLLMMDE------ 165 (240)
T ss_dssp TTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHH--HHHHHHTTCCSEEEEEC------
T ss_pred CCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEcC------
Confidence 1111221111 0 01112334455555 366666777899999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 166 ----Pts~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 166 ----PSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNALGAL 203 (240)
T ss_dssp ----TTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHH
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHH
Confidence 9999999999999999988753 3568999999987654
No 86
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.73 E-value=1.3e-18 Score=178.99 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=112.9
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHh--cCCCceeeecccc----------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQ--LDANFLKVVSSLF---------------------- 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~--l~~~~~~v~~~~~---------------------- 241 (741)
.+.+....++++++|++++| ++|+||||||||||+|+|+|. +.+..+++.....
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 10 WASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred EEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 34455566899999999999 779999999999999999997 5666666543210
Q ss_pred -----cchhhHHHHHh----h-----hhhhhcccccccccccC-CCccchhhh-hcchHHHHHHHHHHHHHhcCCeEEEe
Q psy11254 242 -----VTSKEDMAILM----G-----NQLKRRSTHHLEKTYFP-FYSSAIVDK-YIGESARLIREMFNYARNHQPCIIFM 305 (741)
Q Consensus 242 -----~~~~~~~~~~~----~-----~~~~~~~~~~l~~~~~~-~~~~~~~~~-~~G~~~~~v~~~~~~A~~~~P~ILll 305 (741)
.+..+.+.... + .....++..+++.+++. ......+.+ +|||++|++ ++++|+..+|.+|+|
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv--~iAraL~~~p~lllL 167 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN--EILQLLVLEPTYAVL 167 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH--HHHHHHHHCCSEEEE
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH--HHHHHHHcCCCEEEE
Confidence 01111222111 0 01123445566667773 556677788 999999999 999999999999999
Q ss_pred ccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 306 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 306 DEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|| |++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 168 DE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 168 DE----------TDSGLDIDALKVVARGVNAMRG----PNFGALVITHYQRILN 207 (250)
T ss_dssp EC----------GGGTTCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGGGG
T ss_pred eC----------CCcCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHH
Confidence 99 9999999999999999998853 3679999999988764
No 87
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.73 E-value=1.6e-18 Score=186.57 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=125.2
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc------------------------c
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------F 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------~ 241 (741)
.+.+++..++++++|++++| ++|+||||||||||+|+|||.+.++.+++.... .
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (362)
T 2it1_A 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89 (362)
T ss_dssp EEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTT
T ss_pred EEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCC
Confidence 34455566889999999999 779999999999999999999998877775321 0
Q ss_pred cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.||+|||
T Consensus 90 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~~~P~lLLLDE-------- 159 (362)
T 2it1_A 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV--AIARALVKEPEVLLLDE-------- 159 (362)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES--------
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC--------
Confidence 122334443211 12345567788888888888889999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+.+.+.
T Consensus 160 --P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 160 --PLSNLDALLRLEVRAELKRLQK---ELGITTVYVTHDQAEAL 198 (362)
T ss_dssp --GGGGSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHHHHH
T ss_pred --ccccCCHHHHHHHHHHHHHHHH---hCCCEEEEECCCHHHHH
Confidence 9999999999999999988753 23579999999987653
No 88
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=6.5e-19 Score=183.85 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=119.0
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc------------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV------------------------ 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~------------------------ 242 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+.++.|++......
T Consensus 29 ~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (279)
T 2ihy_A 29 RMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108 (279)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHT
T ss_pred EEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccc
Confidence 4445556899999999999 78999999999999999999998887777542210
Q ss_pred ------chhhHHHHHh----------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEec
Q psy11254 243 ------TSKEDMAILM----------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306 (741)
Q Consensus 243 ------~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllD 306 (741)
+..+++.... ......++..+++.+++.......+.++|||++|++ ++++|+..+|.+||||
T Consensus 109 ~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv--~lAraL~~~p~lLlLD 186 (279)
T 2ihy_A 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV--MIARALMGQPQVLILD 186 (279)
T ss_dssp TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHHTCCSEEEEE
T ss_pred ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHhCCCCEEEEe
Confidence 0111111100 001122345566677777667788999999999999 9999999999999999
Q ss_pred cccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEE--EEeeCCCCCCCc
Q psy11254 307 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKM--IMATNRPDTLDP 360 (741)
Q Consensus 307 Eid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~v--I~at~~~~~ld~ 360 (741)
| |++++|+..+..+.+++..+.. .+.+| |++||+++.+..
T Consensus 187 E----------Pts~LD~~~~~~l~~~l~~l~~----~g~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 187 E----------PAAGLDFIARESLLSILDSLSD----SYPTLAMIYVTHFIEEITA 228 (279)
T ss_dssp S----------TTTTCCHHHHHHHHHHHHHHHH----HCTTCEEEEEESCGGGCCT
T ss_pred C----------CccccCHHHHHHHHHHHHHHHH----CCCEEEEEEEecCHHHHHH
Confidence 9 9999999999999999988753 14567 999999887754
No 89
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.73 E-value=2.9e-18 Score=183.68 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=123.5
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.+.+. ++++++|++++| ++|+||||||||||+|+|||.+.++.+++.....
T Consensus 8 ~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 8 SRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86 (348)
T ss_dssp EEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTT
T ss_pred EEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCC
Confidence 3445555 889999999999 7799999999999999999999988877754210
Q ss_pred cchhhHHHHHhhh---hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCC
Q psy11254 242 VTSKEDMAILMGN---QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p 318 (741)
.+..+++.+.... ....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|+||| |
T Consensus 87 ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv--alAraL~~~P~lLLLDE----------P 154 (348)
T 3d31_A 87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRV--ALARALVTNPKILLLDE----------P 154 (348)
T ss_dssp SCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH--HHHHHTTSCCSEEEEES----------S
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEEC----------c
Confidence 1222344332211 0114566778888888878889999999999999 99999999999999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++++|+..+..+.+++..+.. ..+.++|++||+++++.
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~---~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHK---KNKLTVLHITHDQTEAR 192 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHH---HTTCEEEEEESCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHH
Confidence 999999999999999988753 23679999999987653
No 90
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=2.4e-18 Score=177.79 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=114.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc--------------cc--------chhhHHH
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL--------------FV--------TSKEDMA 249 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~--------------~~--------~~~~~~~ 249 (741)
..++++++|+++ | ++|+||||||||||+|+|+|.+ ++.+++.... ++ +..+++.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~ 95 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY 95 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHH
Confidence 458899999999 9 7899999999999999999999 9877775321 11 1112222
Q ss_pred HHhh--hhhhhcccccccccccC-CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 250 ILMG--NQLKRRSTHHLEKTYFP-FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 250 ~~~~--~~~~~~~~~~l~~~~~~-~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
.... .....++...++.+++. ......+.++|||++|++ ++++|+..+|.+|+||| |++++|+..
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv--~lAraL~~~p~lllLDE----------Pts~LD~~~ 163 (263)
T 2pjz_A 96 LYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV--RTSLALASQPEIVGLDE----------PFENVDAAR 163 (263)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH--HHHHHHHTCCSEEEEEC----------TTTTCCHHH
T ss_pred HhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEEC----------CccccCHHH
Confidence 2111 11123455667777777 667788999999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+..+.+++..+.. +||++||+++.+..
T Consensus 164 ~~~l~~~L~~~~~-------tviivtHd~~~~~~ 190 (263)
T 2pjz_A 164 RHVISRYIKEYGK-------EGILVTHELDMLNL 190 (263)
T ss_dssp HHHHHHHHHHSCS-------EEEEEESCGGGGGG
T ss_pred HHHHHHHHHHhcC-------cEEEEEcCHHHHHH
Confidence 9999999988743 89999999887653
No 91
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.72 E-value=1e-18 Score=189.10 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=124.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL------------------------- 240 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~------------------------- 240 (741)
.+.|.+..++++++|++++| ++|+||||||||||+|+|||.+.++.+++....
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCC
Confidence 34455566889999999999 779999999999999999999988877764321
Q ss_pred -----ccchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 241 -----FVTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 241 -----~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
..+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.||||||
T Consensus 90 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~~~P~lLLLDE-- 165 (372)
T 1g29_1 90 YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV--ALGRAIVRKPQVFLMDE-- 165 (372)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHH--HHHHHHHTCCSEEEEEC--
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHH--HHHHHHhcCCCEEEECC--
Confidence 0122234443221 12234567788888888777889999999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+++++.
T Consensus 166 --------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 166 --------PLSNLDAKLRVRMRAELKKLQR---QLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp --------TTTTSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHHHHH
T ss_pred --------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEECCCHHHHH
Confidence 9999999999999999988753 23579999999987653
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.72 E-value=1.6e-18 Score=187.13 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=123.0
Q ss_pred hccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------
Q psy11254 188 ELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------ 241 (741)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------ 241 (741)
.+.|....++++++|++++| ++|+||||||||||+|+|||.+.++.+++.....
T Consensus 18 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 97 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97 (372)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 34455556889999999999 7799999999999999999999988877754211
Q ss_pred cchhhHHHHHh------hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILM------GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
.+..+++.+.. ......++..+++.+++.......+.++|||++|++ ++++|+..+|.+|||||
T Consensus 98 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~~~P~lLLLDE-------- 167 (372)
T 1v43_A 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV--AVARAIVVEPDVLLMDE-------- 167 (372)
T ss_dssp CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH--HHHHHHTTCCSEEEEES--------
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHhcCCCEEEEcC--------
Confidence 11122232211 112234566778888888777888999999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+.+++.
T Consensus 168 --P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 168 --PLSNLDAKLRVAMRAEIKKLQQ---KLKVTTIYVTHDQVEAM 206 (372)
T ss_dssp --TTTTSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHHHHH
T ss_pred --CCccCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHHHH
Confidence 9999999999999999988753 23579999999987653
No 93
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.71 E-value=7.9e-18 Score=175.07 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=110.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++...... +..+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 45889999999999 78999999999999999999999888877543210 0011
Q ss_pred HHHHHhh-----hhh-----hhccccccccc--ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 247 DMAILMG-----NQL-----KRRSTHHLEKT--YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 247 ~~~~~~~-----~~~-----~~~~~~~l~~~--~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
++..... ... ...+...++.+ ++.....+.+..+|||++|++ ++++|+..+|.||||||
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv--~lAraL~~~p~lllLDE------- 182 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV--ALARALIRKPRLLILDN------- 182 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH--HHHHHHTTCCSEEEEES-------
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH--HHHHHHhcCCCEEEEEC-------
Confidence 1111000 000 00111222222 344445667889999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.+||++||+++.+.
T Consensus 183 ---Pts~LD~~~~~~i~~~l~~~~~---~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 183 ---ATSALDAGNQLRVQRLLYESPE---WASRTVLLITQQLSLAE 221 (271)
T ss_dssp ---TTTTCCHHHHHHHHHHHHHCTT---TTTSEEEEECSCHHHHT
T ss_pred ---CccCCCHHHHHHHHHHHHHHHh---hcCCEEEEEeCCHHHHH
Confidence 9999999999999999988743 23679999999977553
No 94
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.71 E-value=2.1e-18 Score=177.05 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=107.4
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------h
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------K 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~ 245 (741)
...++++++|++++| ++|+||||||||||+|+|+|.+.+..+++........ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHH
Confidence 456899999999999 7899999999999999999999998887754321000 0
Q ss_pred hHHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++..........++...++.+++ .....+....+|||++|++ ++++|+..+|.+|+|||
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv--~iAraL~~~p~lllLDE------- 171 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI--AIARALVNNPKILIFDE------- 171 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH--HHHHHHTTCCSEEEECC-------
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC-------
Confidence 011000000000111112222222 1122334578999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+. .+.+||++||+++.+.
T Consensus 172 ---Pts~LD~~~~~~i~~~l~~~~-----~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 172 ---ATSALDYESEHVIMRNMHKIC-----KGRTVIIIAHRLSTVK 208 (247)
T ss_dssp ---CCSCCCHHHHHHHHHHHHHHH-----TTSEEEEECSSGGGGT
T ss_pred ---CcccCCHHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHH
Confidence 999999999999999998873 2569999999987654
No 95
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.71 E-value=5.6e-18 Score=175.87 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=114.0
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc--CCCceeeeccccc----------------------
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL--DANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l--~~~~~~v~~~~~~---------------------- 242 (741)
+.+.+..++++++|++++| ++|+||||||||||+|+|+|.+ .+..+++......
T Consensus 28 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~ 107 (267)
T 2zu0_C 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107 (267)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc
Confidence 3344556899999999999 7899999999999999999984 4555655432100
Q ss_pred -----chhhHHHHHh-------h------hhhhhcccccccccccC-CCccchhh-hhcchHHHHHHHHHHHHHhcCCeE
Q psy11254 243 -----TSKEDMAILM-------G------NQLKRRSTHHLEKTYFP-FYSSAIVD-KYIGESARLIREMFNYARNHQPCI 302 (741)
Q Consensus 243 -----~~~~~~~~~~-------~------~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P~I 302 (741)
+..+.+.... + .....++..+++.+++. ......+. .+|||++|++ ++++|+..+|.|
T Consensus 108 l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv--~iAraL~~~p~l 185 (267)
T 2zu0_C 108 EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN--DILQMAVLEPEL 185 (267)
T ss_dssp CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH--HHHHHHHHCCSE
T ss_pred ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH--HHHHHHHhCCCE
Confidence 0011111111 0 01123445666777775 34556666 5999999999 999999999999
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
||||| |++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 186 LlLDE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 186 CILDE----------SDSGLDIDALKVVADGVNSLRD----GKRSFIIVTHYQRILD 228 (267)
T ss_dssp EEEES----------TTTTCCHHHHHHHHHHHHTTCC----SSCEEEEECSSGGGGG
T ss_pred EEEeC----------CCCCCCHHHHHHHHHHHHHHHh----cCCEEEEEeeCHHHHH
Confidence 99999 9999999999999999988753 3679999999988664
No 96
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.71 E-value=7.9e-19 Score=188.81 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=121.9
Q ss_pred ccCCChH--HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc-----------------------
Q psy11254 189 LPLLNPE--LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF----------------------- 241 (741)
Q Consensus 189 ~~~~~~~--~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~----------------------- 241 (741)
+.+++.. ++++++|++++| ++|+||||||||||+|+|||.+.++.|++.....
T Consensus 11 ~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETT
T ss_pred EEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCC
Confidence 3344455 788999999999 7799999999999999999999888777643210
Q ss_pred ------cchhhHHHHHhh------hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 242 ------VTSKEDMAILMG------NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 242 ------~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
.+..+++.+... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|+|||
T Consensus 91 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv--alAraL~~~P~lLLLDE-- 166 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV--ALARALVKDPSLLLLDE-- 166 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHTTCCSEEEEES--
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEEC--
Confidence 111223332111 12234566778888888777888999999999999 99999999999999999
Q ss_pred ccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 310 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 310 ~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. ..+.++|++||+++++.
T Consensus 167 --------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 167 --------PFSNLDARMRDSARALVKEVQS---RLGVTLLVVSHDPADIF 205 (353)
T ss_dssp --------TTTTSCGGGHHHHHHHHHHHHH---HHCCEEEEEESCHHHHH
T ss_pred --------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHH
Confidence 9999999999999999988753 23579999999987654
No 97
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=4.4e-17 Score=173.00 Aligned_cols=211 Identities=21% Similarity=0.262 Sum_probs=145.0
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCC---ceEEcCCCChHHHHHHHHHHhcCC-------Cceeeeccc
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKG---CLLYGPPGTGKTLLARAVASQLDA-------NFLKVVSSL 240 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G---vlL~Gp~GtGKTtL~r~ia~~l~~-------~~~~v~~~~ 240 (741)
.+|+|++++|+.|.+.+.... .+..++..|+..+++ ++|+||||||||++++++|..+.. ++..+.
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--- 106 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT--- 106 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC---
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc---
Confidence 379999999999999988754 366777777766554 899999999999999999998743 233222
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+.+...+.|.....+...|..+ .++||||||+|.++..+.+ .
T Consensus 107 --------------------------------~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~ 149 (309)
T 3syl_A 107 --------------------------------RDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--R 149 (309)
T ss_dssp --------------------------------GGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----
T ss_pred --------------------------------HHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--c
Confidence 14455677788888887788776 5789999999999865532 3
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGP 395 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~ 395 (741)
..+......|..++..- ..++.+|++||..+ .++|++.+ ||+..+.|+.|+.+++..+ +..+...
T Consensus 150 ~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~i---l~~~l~~ 219 (309)
T 3syl_A 150 DYGQEAIEILLQVMENN-----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEI---AGHMLDD 219 (309)
T ss_dssp CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHH---HHHHHHH
T ss_pred cccHHHHHHHHHHHhcC-----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHH---HHHHHHH
Confidence 34555666666666542 35678899987543 24678887 9999999999999999887 3332211
Q ss_pred Cccc-CCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHh
Q psy11254 396 IAKH-GEIDYEAVVKL-------SDSFNGADLRNVCTEAGLFAIR 432 (741)
Q Consensus 396 ~~~~-~~~~~~~la~~-------t~g~~gadi~~l~~~A~~~a~~ 432 (741)
.... .......++.. ...-+++++.+++..+...+..
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~ 264 (309)
T 3syl_A 220 QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQAN 264 (309)
T ss_dssp TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 11112333443 2233578888888888765443
No 98
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=3.8e-18 Score=187.47 Aligned_cols=136 Identities=26% Similarity=0.348 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhc-cccch-HHHHHHHHHHHHHhcCCeEEEEcccccccCCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIGE-SARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 600 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~-~~~g~-s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~ 600 (741)
++.+++|+||||||||++|+++|+.++.+|+.++++.+.+ +|+|+ ++..++.+|+.|+.. +++||++.+....
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~- 123 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA- 123 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc-
Confidence 4578999999999999999999999999999999999988 59995 789999999999865 3589988864322
Q ss_pred CCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEe-eCCCCCCCccccCCCCcceEEEcCCCCHH-HHHHHH
Q psy11254 601 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA-TNRPDTLDPALLRPGRLDRKIEIPLPNEQ-ARLEIL 670 (741)
Q Consensus 601 ~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~t-Tn~~~~ld~al~rpgR~d~~i~~~~p~~~-~r~~i~ 670 (741)
. ...-.+++++||.+|||+.+.+++ +++ ||+++.+|+|+.||||||+.|+++.|+.. .|.+|+
T Consensus 124 --~---~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 124 --E---DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --h---hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 1 122358999999999999776554 454 99999999999999999999999999998 788886
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.70 E-value=8e-17 Score=200.40 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=105.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCC----------hHHHhh------hCCC----------CCCC--ceEEcCCCC
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLN----------PELFQR------VGIT----------PPKG--CLLYGPPGT 216 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~----------~~~~~~------~~l~----------~~~G--vlL~Gp~Gt 216 (741)
.+.++|++|||++++|+++.+.+.+|+.. ++.++. .|.. +|+| ++++|||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45689999999999999999999988733 445554 3333 6677 999999999
Q ss_pred hHHHHHHHHHHhcCCC-----ceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcch----HHHH
Q psy11254 217 GKTLLARAVASQLDAN-----FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGE----SARL 287 (741)
Q Consensus 217 GKTtL~r~ia~~l~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~----~~~~ 287 (741)
|||+|+++++.+...+ |+.+.. .. .+-++ +.+|+. +++|.++ +++.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~--~~--~~~~~---------------~~~G~d------~~~~~~~~~~~~e~~ 1148 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEH--AL--DPIYA---------------RKLGVD------IDNLLCSQPDTGEQA 1148 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTS--CC--CHHHH---------------HHTTCC------GGGCEEECCSSHHHH
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEccc--ch--HHHHH---------------HHhCCC------HHHHhhccccchHHH
Confidence 9999999999876544 322211 00 00000 011111 2567777 7888
Q ss_pred HHHHHHHHHhcCCeEEEeccccccccccCC--CCCCcc-HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFS--EGTSAD-REIQRTLMELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 288 v~~~~~~A~~~~P~ILllDEid~l~~~~~~--p~~~lD-~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
++.++.+|+...||++|+||+|+|++.+.. ..+..| .-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1149 l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1149 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred HHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 999999999999999999999999988431 111111 23456688999988875555677776 66654
No 100
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.70 E-value=2.7e-18 Score=175.19 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=114.3
Q ss_pred HHhhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------------------cchhhHHHH
Q psy11254 196 LFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------------------VTSKEDMAI 250 (741)
Q Consensus 196 ~~~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------------------~~~~~~~~~ 250 (741)
.+++++|++++. ++|+||||||||||+|+|+|.+.+..|++..... .+..+++..
T Consensus 14 ~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 377788776665 6799999999999999999999988777753210 011122222
Q ss_pred Hhh----hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH
Q psy11254 251 LMG----NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 251 ~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
... .....++..+++.+++.......+.++|||++|++ ++++|+..+|.+|++|| |++++|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv--~lAral~~~p~lllLDE----------Pts~LD~~~ 161 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV--ALARALVIQPRLLLLDE----------PLSAVDLKT 161 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH--HHHHHHTTCCSSBEEES----------TTSSCCHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 110 01134456677888887777888999999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 327 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 327 ~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+..+.+++..+.. ..+.+||++||+++.+.
T Consensus 162 ~~~~~~~l~~l~~---~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 162 KGVLMEELRFVQR---EFDVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHHHHHHHHHHH---HHTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCEEEEEeCCHHHHH
Confidence 9999999988742 12568999999987654
No 101
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.69 E-value=4.8e-17 Score=172.69 Aligned_cols=154 Identities=22% Similarity=0.300 Sum_probs=119.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhC-------ccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLD-------ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 596 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~-------~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~ 596 (741)
+.+++|+||||||||++|+++|+.+. .+++.++++++.+.++|.+...+..+|..+ .++||||||+|.++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~ 143 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLY 143 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhc
Confidence 44699999999999999999999883 389999999999999999999999999887 46799999999998
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHHHHHHHHH
Q psy11254 597 GRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLEILK 671 (741)
Q Consensus 597 ~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~ 671 (741)
..+... ..+. ..++.|+..|+. ...++++|++||.++ .++|++.+ ||+.+|+|++|+.+++.+|++
T Consensus 144 ~~~~~~--~~~~---~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~ 214 (309)
T 3syl_A 144 RPDNER--DYGQ---EAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAG 214 (309)
T ss_dssp CCC-----CCTH---HHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHH
T ss_pred cCCCcc--cccH---HHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHH
Confidence 665321 2233 344455555552 345788999998754 35799998 999999999999999999999
Q ss_pred HhhcCccccCCCCccccccc
Q psy11254 672 IHAGPIAKHGEIGDAATKWV 691 (741)
Q Consensus 672 ~~~~~~~~~~~~~~~a~~~l 691 (741)
.++.... ..+++.....+
T Consensus 215 ~~l~~~~--~~~~~~~~~~l 232 (309)
T 3syl_A 215 HMLDDQN--YQMTPEAETAL 232 (309)
T ss_dssp HHHHHTT--CEECHHHHHHH
T ss_pred HHHHHcC--CCCCHHHHHHH
Confidence 9987532 23444444433
No 102
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.69 E-value=4e-18 Score=174.87 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=114.6
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--------------------------chhh
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--------------------------TSKE 246 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--------------------------~~~~ 246 (741)
.++++++|++++| ++|+||||||||||+|+|+|.+.+. |++...... +..+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 4788899999999 7799999999999999999999988 888643210 0011
Q ss_pred HHHHHhh-hhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe-------EEEeccccccccccCCC
Q psy11254 247 DMAILMG-NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC-------IIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~-------ILllDEid~l~~~~~~p 318 (741)
++..... .....++..+++.+++.......+..+|||++|++ ++++|+..+|. +|+||| |
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~~~p~~~~~~~~lllLDE----------P 160 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV--RLAAVVLQITPQANPAGQLLLLDE----------P 160 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHH--HHHHHHHHHCTTTCTTCCEEEESS----------T
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHHcCCCcCCCCCeEEEEEC----------C
Confidence 1111000 00023345566667776666778899999999999 99999999999 999999 9
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
++++|+..+..+.+++..+.. .+.+||++||+++.+.
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~----~g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 161 MNSLDVAQQSALDKILSALSQ----QGLAIVMSSHDLNHTL 197 (249)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH
Confidence 999999999999999988853 2568999999987654
No 103
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=167.38 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=105.9
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------cchhhHHHHHhh--hhhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------VTSKEDMAILMG--NQLK 257 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------~~~~~~~~~~~~--~~~~ 257 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++..... .+..+++..... ....
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~ 97 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYY 97 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHH
Confidence 46899999999999 7899999999999999999999888777753210 111222222110 0000
Q ss_pred hccccc---ccccccC-----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 258 RRSTHH---LEKTYFP-----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 258 ~~~~~~---l~~~~~~-----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
.++... .+..+.. ....+.+..+|||++|++ ++++|+..+|.||+||| |++++|+..+..
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv--~lAraL~~~p~lllLDE----------Pts~LD~~~~~~ 165 (237)
T 2cbz_A 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV--SLARAVYSNADIYLFDD----------PLSAVDAHVGKH 165 (237)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH--HHHHHHHHCCSEEEEES----------TTTTSCHHHHHH
T ss_pred HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEeC----------cccccCHHHHHH
Confidence 111111 1111111 112456789999999999 99999999999999999 999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+.+++....... .+.+||++||+++.+.
T Consensus 166 i~~~l~~~~~~~--~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 166 IFENVIGPKGML--KNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHTTSTTSTT--TTSEEEEECSCSTTGG
T ss_pred HHHHHHHHHhhc--CCCEEEEEecChHHHH
Confidence 988874322221 3579999999988764
No 104
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.66 E-value=3.9e-18 Score=174.76 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=108.1
Q ss_pred hccC-CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc----------------------
Q psy11254 188 ELPL-LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV---------------------- 242 (741)
Q Consensus 188 ~~~~-~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~---------------------- 242 (741)
.+.+ .+..++++++|++++| ++|+||||||||||+|+|+|.+.+..+++......
T Consensus 8 ~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp EECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred EEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence 3344 3456899999999999 78999999999999999999998877776532110
Q ss_pred ---chhhHHHHH-hhhhhhhcccccccccccCCC-----------ccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 243 ---TSKEDMAIL-MGNQLKRRSTHHLEKTYFPFY-----------SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 243 ---~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
+..+++... .......++...++.+++... ....+..+|||++|++ ++++|+..+|.+|++||
T Consensus 88 ~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv--~lAral~~~p~lllLDE 165 (243)
T 1mv5_A 88 MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL--AIARAFLRNPKILMLDE 165 (243)
T ss_dssp CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH--HHHHHHHHCCSEEEEEC
T ss_pred ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH--HHHHHHhcCCCEEEEEC
Confidence 000111100 000001112222222332221 1234578999999999 99999999999999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+..+..+.+++..+.. +.+||++||+++.+
T Consensus 166 ----------Pts~LD~~~~~~i~~~l~~~~~-----~~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 166 ----------ATASLDSESESMVQKALDSLMK-----GRTTLVIAHRLSTI 201 (243)
T ss_dssp ----------CSCSSCSSSCCHHHHHHHHHHT-----TSEEEEECCSHHHH
T ss_pred ----------CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEeCChHHH
Confidence 9999999999999999988742 56899999987654
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.66 E-value=1.1e-17 Score=176.23 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=106.9
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~ 245 (741)
...++++++|++++| ++|+||||||||||+++|+|.+.+..|++...... +..
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~ 145 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHH
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHH
Confidence 356899999999999 88999999999999999999999988887543210 001
Q ss_pred hHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.+........++...++.. ++.....+....+|||++|++ ++++|+..+|.||+|||
T Consensus 146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv--aiARAL~~~p~iLlLDE------- 216 (306)
T 3nh6_A 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV--AIARTILKAPGIILLDE------- 216 (306)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH--HHHHHHHHCCSEEEEEC-------
T ss_pred HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH--HHHHHHHhCCCEEEEEC-------
Confidence 1111110000001111111111 122222344467999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+++..+.. +.++|++||+++.+.
T Consensus 217 ---Pts~LD~~~~~~i~~~l~~l~~-----~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 217 ---ATSALDTSNERAIQASLAKVCA-----NRTTIVVAHRLSTVV 253 (306)
T ss_dssp ---CSSCCCHHHHHHHHHHHHHHHT-----TSEEEEECCSHHHHH
T ss_pred ---CcccCCHHHHHHHHHHHHHHcC-----CCEEEEEEcChHHHH
Confidence 9999999999999999988753 358999999987654
No 106
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.66 E-value=4.1e-17 Score=168.70 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=103.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~~ 247 (741)
.+++++++++++| ++|+||||||||||+|+|+|.+.+ .+++...... +..++
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN 112 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence 5889999999999 789999999999999999999865 5666432110 00111
Q ss_pred HHHHhhhhhhhcccccccccccCC-----------CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPF-----------YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+..........++...++..++.. ...+.+..+|||++|++ ++++|+..+|.||+|||
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv--~lAraL~~~p~lllLDE--------- 181 (260)
T 2ghi_A 113 ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI--AIARCLLKDPKIVIFDE--------- 181 (260)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH--HHHHHHHHCCSEEEEEC---------
T ss_pred HhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH--HHHHHHHcCCCEEEEEC---------
Confidence 111000000111111222222110 01234578999999999 99999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+..+..+.+++..+.. +.+||++||+++.+.
T Consensus 182 -Pts~LD~~~~~~i~~~l~~l~~-----~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 182 -ATSSLDSKTEYLFQKAVEDLRK-----NRTLIIIAHRLSTIS 218 (260)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGGST
T ss_pred -ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHHHHH
Confidence 9999999999999999988742 468999999987664
No 107
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=7.2e-16 Score=167.71 Aligned_cols=148 Identities=27% Similarity=0.427 Sum_probs=112.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhcc-ccchH-HHHHHHHHHHH----HhcCCeEEEEccccccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK-YIGES-ARLIREMFNYA----RNHQPCIIFMDEIDAIG 596 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~-~~g~s-~~~i~~~f~~a----~~~~p~Vl~iDE~d~~~ 596 (741)
++.+++|+||||||||++|+++|..++.+|+.++++++... |+|++ ...++.+|..+ ....++||||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 46789999999999999999999999999999999998855 88876 56678888776 34457899999999998
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHccCCC-------------------CCCCeEEEEeeCCC----------CC------
Q psy11254 597 GRRFSEGTSADREIQRTLMELLNQMDGFD-------------------SLGQVKMIMATNRP----------DT------ 641 (741)
Q Consensus 597 ~~r~~~~~~~~~~~~~~l~~lL~~~~g~~-------------------~~~~v~vi~tTn~~----------~~------ 641 (741)
..|...+.+.+.....+.+.||..|+|.. ...++++|+++|.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 88765554444443446777777777431 11234444444432 11
Q ss_pred -----------------------------CCccccCCCCcceEEEcCCCCHHHHHHHHHH
Q psy11254 642 -----------------------------LDPALLRPGRLDRKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 642 -----------------------------ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~ 672 (741)
++|+|+. |||.++.|++|+.+++.+|+..
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788876 9999999999999999999997
No 108
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.7e-17 Score=178.73 Aligned_cols=148 Identities=13% Similarity=0.134 Sum_probs=108.3
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------h
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------S 244 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~ 244 (741)
....++++++|++++| ++|+||||||||||+|+|+|.+. +.+++....... .
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEH
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCH
Confidence 4567899999999999 78999999999999999999876 666665322100 0
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhh-----------hcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK-----------YIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.+++.. .......++..+++.+++.......+.+ +|||++|++ ++++|+..+|.||||||
T Consensus 111 ~enl~~-~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv--alARAL~~~P~lLLLDE------ 181 (390)
T 3gd7_A 111 RKNLDP-NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM--CLARSVLSKAKILLLDE------ 181 (390)
T ss_dssp HHHHCT-TCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH--HHHHHHHTTCCEEEEES------
T ss_pred HHHhhh-ccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH--HHHHHHhcCCCEEEEeC------
Confidence 001100 0111122333445555554444555555 999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+..+..+.+++..+. .+.++|++||+.+.+
T Consensus 182 ----Pts~LD~~~~~~l~~~l~~~~-----~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 182 ----PSAHLDPVTYQIIRRTLKQAF-----ADCTVILCEARIEAM 217 (390)
T ss_dssp ----HHHHSCHHHHHHHHHHHHTTT-----TTSCEEEECSSSGGG
T ss_pred ----CccCCCHHHHHHHHHHHHHHh-----CCCEEEEEEcCHHHH
Confidence 999999999999999987653 246899999997654
No 109
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=1.6e-16 Score=181.51 Aligned_cols=138 Identities=29% Similarity=0.415 Sum_probs=101.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhc---------cccchHHHHHHHHHHHHHhcCCeEEEEcccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD---------KYIGESARLIREMFNYARNHQPCIIFMDEID 593 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~---------~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d 593 (741)
++..++|+|||||||||+|+++++.++.+++.++.+.+.. .|+|.....+...|..+....| |+||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 4567999999999999999999999999999998766433 6778888888888988876665 99999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHccCCCC-------------CCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDS-------------LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~-------------~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
.+...+.. .....||..|+.... ..++++|+|||+++.+||+|++ ||+ +|+|+.
T Consensus 186 ~l~~~~~~----------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~ 252 (543)
T 3m6a_A 186 KMSSDFRG----------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAG 252 (543)
T ss_dssp SCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCC
T ss_pred hhhhhhcc----------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCC
Confidence 98755411 123345555543211 1578999999999999999999 996 799999
Q ss_pred CCHHHHHHHHHHhh
Q psy11254 661 PNEQARLEILKIHA 674 (741)
Q Consensus 661 p~~~~r~~i~~~~~ 674 (741)
|+.+++.+||+.++
T Consensus 253 ~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 253 YTEIEKLEIVKDHL 266 (543)
T ss_dssp CCHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999987
No 110
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.64 E-value=3.4e-17 Score=166.17 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=102.2
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------cchhhHHHHHhhhhhhh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------VTSKEDMAILMGNQLKR 258 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------~~~~~~~~~~~~~~~~~ 258 (741)
...++++++|++++| ++|+||||||||||+|+|+|.+.+..+++..... .+..+++....... ..
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~-~~ 98 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYD-EY 98 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCC-HH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcC-hH
Confidence 356899999999999 7899999999999999999999998887754210 01122222110000 00
Q ss_pred ccccccccccc-------C----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 259 RSTHHLEKTYF-------P----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 259 ~~~~~l~~~~~-------~----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
+....++..++ + ....+....+|||++|++ ++++|+..+|.+|+||| |++++|+..+
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv--~lAral~~~p~lllLDE----------Pts~LD~~~~ 166 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI--SLARAVYKDADLYLLDS----------PFGYLDVLTE 166 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH--HHHHHHHSCCSEEEEES----------TTTTSCHHHH
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH--HHHHHHhcCCCEEEEEC----------cccCCCHHHH
Confidence 00011111111 0 011233578999999999 99999999999999999 9999999999
Q ss_pred HHHHHHH-HhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 328 RTLMELL-NQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 328 ~~l~~lL-~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
..+.+++ ..+. .+.+||++||+++.+
T Consensus 167 ~~i~~~l~~~~~-----~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 167 KEIFESCVCKLM-----ANKTRILVTSKMEHL 193 (229)
T ss_dssp HHHHHHCCCCCT-----TTSEEEEECCCHHHH
T ss_pred HHHHHHHHHHhh-----CCCEEEEEcCChHHH
Confidence 9888763 3332 256899999998655
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.62 E-value=6.6e-16 Score=160.99 Aligned_cols=147 Identities=23% Similarity=0.283 Sum_probs=107.0
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh-ccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV-DKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 599 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~-~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r 599 (741)
..++.+++|+||||||||++|+++|..++.+++.+++++.. +...+.....++.+|..+....++||||||+|.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 45567899999999999999999999999999999877532 22122233678889999887788999999999998765
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCC-CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCH-HHHHHHHHH
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFD-SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNE-QARLEILKI 672 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~-~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~-~~r~~i~~~ 672 (741)
..+. .... ..+..++..+++.. ...+++||+|||.++.+|++.++ +||+..|++|+++. ++...++..
T Consensus 141 ~~~~-~~~~---~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 141 PIGP-RFSN---LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTTT-BCCH---HHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH
T ss_pred CCCh-hHHH---HHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh
Confidence 3222 1222 34444555566543 23468899999999999984333 49999999988876 555555543
No 112
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.62 E-value=1.5e-15 Score=160.88 Aligned_cols=147 Identities=31% Similarity=0.476 Sum_probs=110.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhc-cccchH-HHHHHHHHHHH-----HhcCCeEEEEcccccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD-KYIGES-ARLIREMFNYA-----RNHQPCIIFMDEIDAI 595 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~-~~~g~s-~~~i~~~f~~a-----~~~~p~Vl~iDE~d~~ 595 (741)
.+.+++|+||||||||++|++++..++.+++.++++++.. .|+|.. ...++.++..+ ....++||||||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 3568999999999999999999999999999999998876 677653 34566766633 1123689999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHccCCC--------CCCCeEEEEe----eCCCCCCCccccCCCCcceEEEcCCCCH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLNQMDGFD--------SLGQVKMIMA----TNRPDTLDPALLRPGRLDRKIEIPLPNE 663 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~--------~~~~v~vi~t----Tn~~~~ld~al~rpgR~d~~i~~~~p~~ 663 (741)
...+...+ .+.....+.+.|+..+++.. ...++++|++ ++.+..+++++.+ ||+.+|+|++|+.
T Consensus 129 ~~~~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 129 CKKGEYSG--ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSA 204 (310)
T ss_dssp SCCSSCCS--SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCH
T ss_pred Cccccccc--cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCH
Confidence 87654322 22222233455666565431 2346778888 4678899999997 9999999999999
Q ss_pred HHHHHHHHHh
Q psy11254 664 QARLEILKIH 673 (741)
Q Consensus 664 ~~r~~i~~~~ 673 (741)
+++.+|++.+
T Consensus 205 ~~~~~il~~~ 214 (310)
T 1ofh_A 205 ADFERILTEP 214 (310)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhh
Confidence 9999999953
No 113
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.59 E-value=2.1e-16 Score=165.60 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=100.0
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc------------cchhhHHHHHhhhhhhhc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF------------VTSKEDMAILMGNQLKRR 259 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~------------~~~~~~~~~~~~~~~~~~ 259 (741)
..++++++|++++| ++|+||||||||||+|+|+|.+.+..|++..... .+..+++. ..... ..+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~-~~~ 128 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYD-EYR 128 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCC-HHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhh-Ccccc-hHH
Confidence 45889999999999 7899999999999999999999888777753210 01122222 00000 000
Q ss_pred ccccccccccCC-----------CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 260 STHHLEKTYFPF-----------YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 260 ~~~~l~~~~~~~-----------~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
....++..++.. ........+|||++|++ ++++|+..+|.+|+||| |++++|+..+.
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv--~lAraL~~~p~lllLDE----------Pts~LD~~~~~ 196 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI--SLARAVYKDADLYLLDS----------PFGYLDVLTEK 196 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH--HHHHHHHSCCSEEEEES----------TTTTCCHHHHH
T ss_pred HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH--HHHHHHHCCCCEEEEEC----------CcccCCHHHHH
Confidence 111111111110 11223478999999999 99999999999999999 99999999999
Q ss_pred HHHHHH-HhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 329 TLMELL-NQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 329 ~l~~lL-~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
.+.+++ ..+. .+.+||++||+++.+
T Consensus 197 ~i~~~ll~~~~-----~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 197 EIFESCVCKLM-----ANKTRILVTSKMEHL 222 (290)
T ss_dssp HHHHHCCCCCT-----TTSEEEEECCCHHHH
T ss_pred HHHHHHHHHhh-----CCCEEEEEecCHHHH
Confidence 888763 3332 256999999998654
No 114
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.59 E-value=5.2e-16 Score=176.14 Aligned_cols=150 Identities=12% Similarity=0.082 Sum_probs=113.5
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccc--------------cchhhHHHHHhhh---hhhh
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--------------VTSKEDMAILMGN---QLKR 258 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~--------------~~~~~~~~~~~~~---~~~~ 258 (741)
...++++++| ++|+||||||||||+|+|+|.+.+..+++..... ....+.+...... ....
T Consensus 285 ~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 364 (538)
T 3ozx_A 285 VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSW 364 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH
T ss_pred EeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHH
Confidence 3345567788 7899999999999999999999988777743210 1111222221111 1112
Q ss_pred cccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 259 RSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
.+..+++.+++.......+..+|||++|++ ++++|+..+|.|||||| |++++|+..+..+.+++..+.
T Consensus 365 ~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv--~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~ 432 (538)
T 3ozx_A 365 FFEEVTKRLNLHRLLESNVNDLSGGELQKL--YIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVT 432 (538)
T ss_dssp HHHHTTTTTTGGGCTTSBGGGCCHHHHHHH--HHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHhcCChhhCCHHHHHHH--HHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH
Confidence 345567777777777889999999999999 99999999999999999 999999999999999998875
Q ss_pred CCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 339 GFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld~al 362 (741)
. ..+.+||++|||++++...+
T Consensus 433 ~---~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 433 R---ERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp H---HTTCEEEEECSCHHHHHHHC
T ss_pred H---hCCCEEEEEeCCHHHHHHhC
Confidence 3 24679999999998776433
No 115
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.58 E-value=6.8e-16 Score=178.12 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=107.5
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++|+||||||||||+++|+|.+.|+.|++...... +..+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHH
Confidence 56899999999999 88999999999999999999999887777543210 0001
Q ss_pred HHHHHh-hhhhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 247 DMAILM-GNQLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
++.... .+....++..+++..++. ....+....+|||++|++ ++++|+..+|+||++||
T Consensus 436 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~--~iAral~~~p~illlDE------- 506 (582)
T 3b5x_A 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV--AIARALLRDAPVLILDE------- 506 (582)
T ss_pred HHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH--HHHHHHHcCCCEEEEEC-------
Confidence 111100 001111222233333322 112233468999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+..+.. +.++|++||+++.+.
T Consensus 507 ---pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~~~ 543 (582)
T 3b5x_A 507 ---ATSALDTESERAIQAALDELQK-----NKTVLVIAHRLSTIE 543 (582)
T ss_pred ---ccccCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHHH
Confidence 9999999999999999988742 568999999987653
No 116
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.57 E-value=9.8e-16 Score=174.34 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=113.5
Q ss_pred HhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc---c----------cchhhHHHHH-h-hhhhhhc
Q psy11254 197 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL---F----------VTSKEDMAIL-M-GNQLKRR 259 (741)
Q Consensus 197 ~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~---~----------~~~~~~~~~~-~-~~~~~~~ 259 (741)
|+.+++.+++| ++|+||||||||||+|+|+|.+.+..+++.... + .+..+.+... . ......+
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~ 381 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFY 381 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHH
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHH
Confidence 55556667788 789999999999999999999988766653210 0 1111112111 0 1111234
Q ss_pred ccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 260 ~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
+..+++.+++.......+..+|||++|++ ++++|+..+|.||+||| |++++|...+..+.+++..+..
T Consensus 382 ~~~~l~~~~l~~~~~~~~~~LSGGe~qrv--~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~~ 449 (538)
T 1yqt_A 382 KTELLKPLGIIDLYDREVNELSGGELQRV--AIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLME 449 (538)
T ss_dssp HHHTTTTTTCGGGTTSBGGGCCHHHHHHH--HHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH
Confidence 56677888887667888999999999999 99999999999999999 9999999999999999988742
Q ss_pred CCCCCCeEEEEeeCCCCCCCccc
Q psy11254 340 FDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~ld~al 362 (741)
..+.+||++||+++++...+
T Consensus 450 ---~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 450 ---KNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp ---HHTCEEEEECSCHHHHHHHC
T ss_pred ---hCCCEEEEEeCCHHHHHHhC
Confidence 13568999999988776444
No 117
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.57 E-value=1e-15 Score=176.10 Aligned_cols=149 Identities=16% Similarity=0.075 Sum_probs=113.4
Q ss_pred HhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccc-------------ccchhhHHHHH-h-hhhhhhc
Q psy11254 197 FQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSL-------------FVTSKEDMAIL-M-GNQLKRR 259 (741)
Q Consensus 197 ~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~-------------~~~~~~~~~~~-~-~~~~~~~ 259 (741)
|+.+++++++| ++|+||||||||||+|+|+|.+.+..|++.... ..+..+.+... . ......+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 451 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY 451 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHH
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHH
Confidence 55566667788 789999999999999999999988766653210 01111122111 0 1111234
Q ss_pred ccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 260 ~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
+..+++.+++.......+..+|||++|++ ++++|+..+|.||+||| |++++|+..+..+.+++..+..
T Consensus 452 ~~~~l~~~~l~~~~~~~~~~LSGGe~QRv--~iAraL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 452 KTELLKPLGIIDLYDRNVEDLSGGELQRV--AIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp HHHTHHHHTCTTTTTSBGGGCCHHHHHHH--HHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH
Confidence 56677788887777888999999999999 99999999999999999 9999999999999999988742
Q ss_pred CCCCCCeEEEEeeCCCCCCCc
Q psy11254 340 FDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~ld~ 360 (741)
..+.+||++|||++++..
T Consensus 520 ---~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 520 ---KNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp ---HTTCEEEEECSCHHHHHH
T ss_pred ---hCCCEEEEEeCCHHHHHH
Confidence 235689999999887654
No 118
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.57 E-value=7.7e-16 Score=177.65 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=108.6
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
+.+++++++++++| ++|+||||||||||+++|+|.+.+..|++...... +..+
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence 46899999999999 88999999999999999999999988877543210 0011
Q ss_pred HHHHHh-hhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 247 DMAILM-GNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
++.... .+....++..+++..++ .....+....+|||++|++ ++++|+..+|+||++||
T Consensus 436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl--~iAral~~~p~illlDE------- 506 (582)
T 3b60_A 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI--AIARALLRDSPILILDE------- 506 (582)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH--HHHHHHHHCCSEEEEET-------
T ss_pred HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHHhCCCEEEEEC-------
Confidence 221111 01111122223333222 2222334568999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+.++.. +.++|++||+++.+.
T Consensus 507 ---pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 507 ---ATSALDTESERAIQAALDELQK-----NRTSLVIAHRLSTIE 543 (582)
T ss_dssp ---TTSSCCHHHHHHHHHHHHHHHT-----TSEEEEECSCGGGTT
T ss_pred ---ccccCCHHHHHHHHHHHHHHhC-----CCEEEEEeccHHHHH
Confidence 9999999999999999988752 458999999988664
No 119
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=1.1e-15 Score=176.74 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=107.1
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~~ 246 (741)
..+++++++++++| ++|+||||||||||+++|+|.+.+..|++....... ..+
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 447 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence 45889999999999 889999999999999999999999888876432110 011
Q ss_pred HHHHHhhhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++...........+...++..++ .....+....+|||++|++ ++++|+..+|+||++||
T Consensus 448 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv--~iAral~~~p~illlDE-------- 517 (598)
T 3qf4_B 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL--AITRAFLANPKILILDE-------- 517 (598)
T ss_dssp HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH--HHHHHHHTCCSEEEECC--------
T ss_pred HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH--HHHHHHhcCCCEEEEEC--------
Confidence 11110000011112222222221 1112233467899999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+..+.. +.++|++||+++.+.
T Consensus 518 --pts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~~~ 554 (598)
T 3qf4_B 518 --ATSNVDTKTEKSIQAAMWKLME-----GKTSIIIAHRLNTIK 554 (598)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHT-----TSEEEEESCCTTHHH
T ss_pred --CccCCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHHH
Confidence 9999999999999999988742 569999999998664
No 120
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.55 E-value=1.3e-15 Score=175.63 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=107.5
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------------------------hh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------------------------SK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------------------------~~ 245 (741)
.+.+++++++++++| ++|+||||||||||+++|+|.+.+..|++....... ..
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 432 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHH
Confidence 346899999999999 889999999999999999999999888876432100 01
Q ss_pred hHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++...........+...++.. ++.....+....+|||++|++ ++++|+..+|+||++||
T Consensus 433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv--~lAral~~~p~illlDE------- 503 (578)
T 4a82_A 433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL--SIARIFLNNPPILILDE------- 503 (578)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH--HHHHHHHHCCSEEEEES-------
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH--HHHHHHHcCCCEEEEEC-------
Confidence 1111100000011111111111 222222344568999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+..+.. +.++|++||+++.+.
T Consensus 504 ---pts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 504 ---ATSALDLESESIIQEALDVLSK-----DRTTLIVAHRLSTIT 540 (578)
T ss_dssp ---TTTTCCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGGTT
T ss_pred ---ccccCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHHH
Confidence 9999999999999999887743 358999999998764
No 121
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.53 E-value=5.5e-14 Score=152.84 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=126.8
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCc--cEEEEechhhhccccchH------------------------------
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSAIVDKYIGES------------------------------ 568 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~--~~~~v~~~~l~~~~~g~s------------------------------ 568 (741)
..++.+++|+||||||||++|++++..++. +++.+++..+...+++.+
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 146 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDV 146 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhh
Confidence 345678999999999999999999999975 788888776555444332
Q ss_pred -------------------HHHHHHHHHHHHhc---------CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHH
Q psy11254 569 -------------------ARLIREMFNYARNH---------QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 620 (741)
Q Consensus 569 -------------------~~~i~~~f~~a~~~---------~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~ 620 (741)
...++..|..+... .|+||||||+|.+. . ..++.++..
T Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~-----------~---~~~~~L~~~ 212 (368)
T 3uk6_A 147 INSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD-----------I---ESFSFLNRA 212 (368)
T ss_dssp HTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB-----------H---HHHHHHHHH
T ss_pred hhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC-----------h---HHHHHHHHH
Confidence 23344555444321 26899999999862 2 234455555
Q ss_pred ccCCCCCCCeEEEEee-----------CCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCccccc
Q psy11254 621 MDGFDSLGQVKMIMAT-----------NRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATK 689 (741)
Q Consensus 621 ~~g~~~~~~v~vi~tT-----------n~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~ 689 (741)
++.. ...+++++++ |.++.+++++++ ||.. ++|++|+.+++.+|++.++... +..+++.+..
T Consensus 213 le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~--~~~~~~~~l~ 285 (368)
T 3uk6_A 213 LESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEE--DVEMSEDAYT 285 (368)
T ss_dssp TTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHT--TCCBCHHHHH
T ss_pred hhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHH
Confidence 5532 2245444443 357889999999 9987 7999999999999999887642 2356666666
Q ss_pred ccccccc--cchHHHHHHHhhhhhh-hcCCCcccHHHHHHHHH
Q psy11254 690 WVLPFTA--GGFIYIATVSVIPELL-EDTSPKQTVKEILALLL 729 (741)
Q Consensus 690 ~l~~~~s--~gf~~~a~~~~~~~l~-~~~~~~~s~~~i~~~l~ 729 (741)
.+..... +.+........+-..+ .+....++.+++..++.
T Consensus 286 ~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 286 VLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 6665553 3344444444433333 34566899999988765
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.52 E-value=3.5e-14 Score=147.94 Aligned_cols=207 Identities=18% Similarity=0.226 Sum_probs=122.3
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHH
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAI 250 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~ 250 (741)
..+.|..+..+.+.+.... -...+...+...+.+++|+||||||||++|+++|..++.++..+....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---------- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---------- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG----------
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH----------
Confidence 3456666666665553111 012233323455567999999999999999999999988877765321
Q ss_pred HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHH
Q psy11254 251 LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 330 (741)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l 330 (741)
.+++...+.....++..|..+....|++|||||+|.+++.+..+. .........|
T Consensus 100 ------------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L 154 (272)
T 1d2n_A 100 ------------------------KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQAL 154 (272)
T ss_dssp ------------------------GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHH
T ss_pred ------------------------HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHH
Confidence 111111223335567788888878899999999999987653222 2233333333
Q ss_pred HHHHHhccCCC-CCCCeEEEEeeCCCCCCCc-cccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHH
Q psy11254 331 MELLNQMDGFD-SLGQVKMIMATNRPDTLDP-ALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVV 408 (741)
Q Consensus 331 ~~lL~~l~~~~-~~~~v~vI~at~~~~~ld~-al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la 408 (741)
..+ +++.. ...++.+|++||.++.+++ .+. +||+..+.+|+++..+.... .+.. ...+ .+.+...++
T Consensus 155 ~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~~l~--~rf~~~i~~p~l~~r~~i~~--i~~~-~~~~---~~~~~~~l~ 223 (272)
T 1d2n_A 155 LVL---LKKAPPQGRKLLIIGTTSRKDVLQEMEML--NAFSTTIHVPNIATGEQLLE--ALEL-LGNF---KDKERTTIA 223 (272)
T ss_dssp HHH---TTCCCSTTCEEEEEEEESCHHHHHHTTCT--TTSSEEEECCCEEEHHHHHH--HHHH-HTCS---CHHHHHHHH
T ss_pred HHH---hcCccCCCCCEEEEEecCChhhcchhhhh--cccceEEcCCCccHHHHHHH--HHHh-cCCC---CHHHHHHHH
Confidence 333 33221 2346778999999988887 444 48998898877665322211 1211 1111 122345666
Q ss_pred HhcCCC----CHHHHHHHHHHH
Q psy11254 409 KLSDSF----NGADLRNVCTEA 426 (741)
Q Consensus 409 ~~t~g~----~gadi~~l~~~A 426 (741)
..+.|| +-+++.++++.|
T Consensus 224 ~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 224 QQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp HHHTTSEEEECHHHHHHHHHHH
T ss_pred HHhcCCCccccHHHHHHHHHHH
Confidence 666666 445555555443
No 123
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.3e-15 Score=172.75 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=111.3
Q ss_pred HHhhhCCCCCCC-------ceEEcCCCChHHHHHHHHHHhcCCCceeeecc--------c---cc--chhhHHHHHhhh-
Q psy11254 196 LFQRVGITPPKG-------CLLYGPPGTGKTLLARAVASQLDANFLKVVSS--------L---FV--TSKEDMAILMGN- 254 (741)
Q Consensus 196 ~~~~~~l~~~~G-------vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~--------~---~~--~~~~~~~~~~~~- 254 (741)
.+.+++|++..| ++|+||||||||||+|+|+|.+.++.+..... . .. ...+.+......
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 566778888887 68999999999999999999998876542100 0 00 111111110000
Q ss_pred -hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHH
Q psy11254 255 -QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 333 (741)
Q Consensus 255 -~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~l 333 (741)
........+++.+++.......+..+|||++|++ ++++|+..+|.||+||| |++++|+..+..+.++
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv--~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRV--AIVLALGIPADIYLIDE----------PSAYLDSEQRIICSKV 509 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHH--HHHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHH
Confidence 0112334566677777777888999999999999 99999999999999999 9999999999999999
Q ss_pred HHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 334 LNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 334 L~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
+.++.. ..+.+||++|||++++..
T Consensus 510 l~~l~~---~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 510 IRRFIL---HNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp HHHHHH---HHTCEEEEECSCHHHHHH
T ss_pred HHHHHH---hCCCEEEEEeCCHHHHHH
Confidence 988742 135699999999887653
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.52 E-value=3.3e-14 Score=138.60 Aligned_cols=135 Identities=27% Similarity=0.439 Sum_probs=102.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHH-hcCCeEEEE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYAR-NHQPCIIFM 589 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~-~~~p~Vl~i 589 (741)
.+.+++|+||||||||+++++++..+ +.+++.++..++. ..+.|.....++.++..+. ...|+||||
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 45679999999999999999999986 5778888888776 4566777778888888664 355889999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHH
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
||++.+...+..... ......+..++.. +++.+|++||.+. .+|+++.+ ||+ .++|++|+.+
T Consensus 122 De~~~l~~~~~~~~~---~~~~~~l~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~ 188 (195)
T 1jbk_A 122 DELHTMVGAGKADGA---MDAGNMLKPALAR-------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVE 188 (195)
T ss_dssp ETGGGGTT------C---CCCHHHHHHHHHT-------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHH
T ss_pred eCHHHHhccCcccch---HHHHHHHHHhhcc-------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHH
Confidence 999998765432211 1234455555532 3567899999876 78999998 999 6999999999
Q ss_pred HHHHHH
Q psy11254 665 ARLEIL 670 (741)
Q Consensus 665 ~r~~i~ 670 (741)
++.+|+
T Consensus 189 ~~~~il 194 (195)
T 1jbk_A 189 DTIAIL 194 (195)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 999876
No 125
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.52 E-value=4.7e-14 Score=149.29 Aligned_cols=177 Identities=28% Similarity=0.380 Sum_probs=111.0
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhC-CCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~-l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
.++.|.+++++.+...+..++....+...+. -..+.+++|+||||||||+++++++..++..+..+....+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~----- 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV----- 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSC-----
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccC-----
Confidence 4589999999999988765322211111110 1245679999999999999999999999888877765322110
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchH-HHHHHHHHHHH-----HhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES-ARLIREMFNYA-----RNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~-~~~v~~~~~~A-----~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
.|.|.. ...++..+..+ ....++||||||+|.+...... .+.+
T Consensus 90 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~ 138 (310)
T 1ofh_A 90 -----------------------------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGAD 138 (310)
T ss_dssp -----------------------------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSH
T ss_pred -----------------------------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccc
Confidence 122211 12233333321 1234789999999999876532 2223
Q ss_pred HHH---HHHHHHHHHhccC-----CCCCCCeEEEEee----CCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 324 REI---QRTLMELLNQMDG-----FDSLGQVKMIMAT----NRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 324 ~~~---~~~l~~lL~~l~~-----~~~~~~v~vI~at----~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
... +..|..++....- .....++.+|+++ +.+..+++++.+ ||+..+.+++|+.+++..+
T Consensus 139 ~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i 210 (310)
T 1ofh_A 139 VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERI 210 (310)
T ss_dssp HHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHH
Confidence 322 3444444442110 0012467888884 567788888886 9998899999999988777
No 126
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=5.8e-15 Score=170.18 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=107.9
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS------------------------- 244 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~------------------------- 244 (741)
..+.+++++++++++| ++|+||||||||||+++|+|.+.+..|++........
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccH
Confidence 3456899999999999 8899999999999999999999998888764321100
Q ss_pred hhHHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
.+++...............++.. ++.....+....+|||++|++ ++++|+..+|+||++||
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv--~lARal~~~p~illlDE------ 505 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL--SIARALVKKPKVLILDD------ 505 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH--HHHHHHHTCCSEEEEES------
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH--HHHHHHHcCCCEEEEEC------
Confidence 01111000000001111111111 222223445578999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+.....+.+.+..+.. +.++|++||+++.+.
T Consensus 506 ----pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 506 ----CTSSVDPITEKRILDGLKRYTK-----GCTTFIITQKIPTAL 542 (587)
T ss_dssp ----CCTTSCHHHHHHHHHHHHHHST-----TCEEEEEESCHHHHT
T ss_pred ----CcccCCHHHHHHHHHHHHHhCC-----CCEEEEEecChHHHH
Confidence 9999999999999999887642 569999999987653
No 127
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.51 E-value=9.7e-14 Score=150.88 Aligned_cols=254 Identities=20% Similarity=0.239 Sum_probs=145.3
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC--Cceeeeccccc
Q psy11254 165 PGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLFV 242 (741)
Q Consensus 165 ~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~~ 242 (741)
.|..+|+++.|.+..++.+...... +.. +..++++++|+||||||||+++++++..++. ++..+.+....
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-------~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-------IRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------HHT-TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-------HHc-CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3455699999999999887655432 111 2233467999999999999999999999975 45555443221
Q ss_pred chhhHHHHHhhhhhhhccccc----------ccccc-cCCCcc---chhhhhcchHHHHHHHHHHHHHh---------cC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHH----------LEKTY-FPFYSS---AIVDKYIGESARLIREMFNYARN---------HQ 299 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~----------l~~~~-~~~~~~---~~~~~~~G~~~~~v~~~~~~A~~---------~~ 299 (741)
...............+..... +.... ...... .....+.|.....++..+..+.. ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 111000000000000000000 00000 000000 11122223334445555554433 12
Q ss_pred CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC------------CCCCCCccccCCCc
Q psy11254 300 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN------------RPDTLDPALLRPGR 367 (741)
Q Consensus 300 P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~------------~~~~ld~al~r~gr 367 (741)
|+||||||+|.+. ++....|..+ ++.. ... .++++|+ .+..+++++.+ |
T Consensus 190 ~~vl~IDEi~~l~-----------~~~~~~L~~~---le~~--~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R 250 (368)
T 3uk6_A 190 PGVLFIDEVHMLD-----------IESFSFLNRA---LESD--MAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD--R 250 (368)
T ss_dssp BCEEEEESGGGSB-----------HHHHHHHHHH---TTCT--TCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT--T
T ss_pred CceEEEhhccccC-----------hHHHHHHHHH---hhCc--CCC-eeeeecccceeeeeccCCCCcccCCHHHHh--h
Confidence 7899999998763 3344444444 3321 123 3455554 36778899988 7
Q ss_pred cceeeecCCCCHHHHHhccccchhccC--CCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHH
Q psy11254 368 LDRKIEIPLPNEQARLAHTWPISIHAG--PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMK 445 (741)
Q Consensus 368 ~d~~i~~~~p~~~~r~~i~~~l~~~~~--~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~ 445 (741)
+.. +.+++|+.+++..+ +..... .... .+.....++..+.+.+.+++.+++..|...+.......++.+++..
T Consensus 251 ~~~-i~~~~~~~~e~~~i---l~~~~~~~~~~~-~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~ 325 (368)
T 3uk6_A 251 LLI-VSTTPYSEKDTKQI---LRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKR 325 (368)
T ss_dssp EEE-EEECCCCHHHHHHH---HHHHHHHTTCCB-CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred ccE-EEecCCCHHHHHHH---HHHHHHHcCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 865 79999999998877 332211 1111 1122456777777678899999999999988888888899999988
Q ss_pred HHHHh
Q psy11254 446 AVRKV 450 (741)
Q Consensus 446 a~~~~ 450 (741)
++..+
T Consensus 326 a~~~~ 330 (368)
T 3uk6_A 326 VYSLF 330 (368)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 87653
No 128
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.51 E-value=2e-15 Score=174.68 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=106.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~~ 247 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..|++...... +..++
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 5899999999999 88999999999999999999999988877543210 00111
Q ss_pred HHHHhhh---hhhhcccccccccccC-----------CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc
Q psy11254 248 MAILMGN---QLKRRSTHHLEKTYFP-----------FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 313 (741)
Q Consensus 248 ~~~~~~~---~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~ 313 (741)
+...... ....++..+++..++. ....+....+|||++|++ ++++|+..+|+||++||
T Consensus 438 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv--~iAral~~~p~illlDE------ 509 (595)
T 2yl4_A 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI--AIARALLKNPKILLLDE------ 509 (595)
T ss_dssp HHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH--HHHHHHHHCCSEEEEEC------
T ss_pred HhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH--HHHHHHHcCCCEEEEEC------
Confidence 2111000 1112222333333221 111222378999999999 99999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 314 ~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
|++++|+.....+.+.+.++.. +.++|++||+++.+
T Consensus 510 ----pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 510 ----ATSALDAENEYLVQEALDRLMD-----GRTVLVIAHRLSTI 545 (595)
T ss_dssp ----CCSSCCHHHHHHHHHHHHHHHT-----TSEEEEECCCHHHH
T ss_pred ----cccCCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHHH
Confidence 9999999999999999988753 35899999998765
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.51 E-value=6.7e-14 Score=152.10 Aligned_cols=179 Identities=22% Similarity=0.301 Sum_probs=112.8
Q ss_pred cccChHHHHHHHHHHhhccCCChHHH-hhhCC-CCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELF-QRVGI-TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~-~~~~l-~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
.|.|.+.+++.|...+..++...... ..... ..+.+++|+||||||||++|++||..++.++..+....+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~------- 88 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT------- 88 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT-------
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc-------
Confidence 36899999999999885332211100 00111 1345699999999999999999999999888887652111
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchH-HHHHHHHHHHH----HhcCCeEEEeccccccccccCCCCCCccH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES-ARLIREMFNYA----RNHQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~-~~~v~~~~~~A----~~~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
...|.|.. ...++.++..+ ....|+||||||+|++...+.++..+.+.
T Consensus 89 ---------------------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~ 141 (363)
T 3hws_A 89 ---------------------------EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDV 141 (363)
T ss_dssp ---------------------------TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHH
T ss_pred ---------------------------ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccccc
Confidence 02355554 44455566555 34568899999999999887665544554
Q ss_pred HHHHHHHHHHHhccCC-------------------CCCCCeEEEEeeCCC----------CC------------------
Q psy11254 325 EIQRTLMELLNQMDGF-------------------DSLGQVKMIMATNRP----------DT------------------ 357 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~-------------------~~~~~v~vI~at~~~----------~~------------------ 357 (741)
........++..|++. -...++.+|++++.. ..
T Consensus 142 ~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~ 221 (363)
T 3hws_A 142 SGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 221 (363)
T ss_dssp HHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSC
T ss_pred chHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchh
Confidence 4333344444444421 112345556655532 01
Q ss_pred -----------------CCccccCCCccceeeecCCCCHHHHHhcc
Q psy11254 358 -----------------LDPALLRPGRLDRKIEIPLPNEQARLAHT 386 (741)
Q Consensus 358 -----------------ld~al~r~gr~d~~i~~~~p~~~~r~~i~ 386 (741)
+.|.+.. ||+..+.+++|+.+.+..|.
T Consensus 222 ~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~ 265 (363)
T 3hws_A 222 EGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQIL 265 (363)
T ss_dssp HHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHH
Confidence 4566655 99999999999998887773
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.50 E-value=3.8e-13 Score=144.51 Aligned_cols=214 Identities=19% Similarity=0.190 Sum_probs=142.4
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+|+++.|.+.+++.+.+.+..... .-..+.+++|+||||||||+++++++..++..+..+.+....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 3789999999999999998864311 012345699999999999999999999999888777642110
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
....+...+.. ..++++|||||+|.+. +..+
T Consensus 93 ------------------------------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~ 123 (338)
T 3pfi_A 93 ------------------------------------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIE 123 (338)
T ss_dssp ------------------------------------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHH
T ss_pred ------------------------------------chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHH
Confidence 01111112221 3578899999998773 3455
Q ss_pred HHHHHHHHhccCC-------------CCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC
Q psy11254 328 RTLMELLNQMDGF-------------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 328 ~~l~~lL~~l~~~-------------~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
..|...+..-... ....++.+|++||+...+++++.+ ||+..+.++.|+..++..+ +..+..
T Consensus 124 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~i---l~~~~~ 198 (338)
T 3pfi_A 124 EVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALI---LQKAAL 198 (338)
T ss_dssp HHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHH---HHHHHH
Confidence 6666665542200 001247899999999999999988 8999999999999998876 333222
Q ss_pred CCccc-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHH
Q psy11254 395 PIAKH-GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449 (741)
Q Consensus 395 ~~~~~-~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 449 (741)
..... .......++..+.| +.+.+.+++..+...+.......++.+++..++..
T Consensus 199 ~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 199 KLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 11111 11123455564444 45778888887766655555566778777766654
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.49 E-value=2.5e-13 Score=145.95 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=122.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 602 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~ 602 (741)
+..+++|+||||||||++|++++..++.+|+.++++.+. ....+..++.. ...+++|||||++.+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~------ 119 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLS------ 119 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcC------
Confidence 345799999999999999999999999999999887652 12233344432 2457899999999863
Q ss_pred CCcccHHHHHHHHHHHHHccCC-------------CCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 603 GTSADREIQRTLMELLNQMDGF-------------DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 603 ~~~~~~~~~~~l~~lL~~~~g~-------------~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
......+...++..... ....++.+|++||+...+++++.+ ||+.+++|++|+.+++..|
T Consensus 120 -----~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~i 192 (338)
T 3pfi_A 120 -----PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALI 192 (338)
T ss_dssp -----HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHH
Confidence 23445555555543210 011248899999999999999998 9999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccccccch--HHHHHHHhhhhhhh-cCCCcccHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAGGF--IYIATVSVIPELLE-DTSPKQTVKEILALLL 729 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf--~~~a~~~~~~~l~~-~~~~~~s~~~i~~~l~ 729 (741)
++.++.... ..+++.+...+.. ..+|. ...+.+..+...+. ......+.+++..++.
T Consensus 193 l~~~~~~~~--~~~~~~~~~~l~~-~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 193 LQKAALKLN--KTCEEKAALEIAK-RSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHTT--CEECHHHHHHHHH-TTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 998876432 2355555555444 33333 33333333222222 2344566666665543
No 132
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=3e-13 Score=154.06 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=89.0
Q ss_pred ChHHHhhhCC-CCCCC--ceEEcCCCChHHHHHHH--HHHhcCCCceeeecccccchhhHHHHH-------hhhhhhhcc
Q psy11254 193 NPELFQRVGI-TPPKG--CLLYGPPGTGKTLLARA--VASQLDANFLKVVSSLFVTSKEDMAIL-------MGNQLKRRS 260 (741)
Q Consensus 193 ~~~~~~~~~l-~~~~G--vlL~Gp~GtGKTtL~r~--ia~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~ 260 (741)
....++++++ .+++| ++|+||||||||||+++ ++|...+..+.+...... ........ .++....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~-~~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-TPQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC-CHHHHHHHHHHcCCChHHhhcc--
Confidence 3457888899 88898 78999999999999999 678886555544332111 11111110 0110000
Q ss_pred cccccccccCC--CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 261 THHLEKTYFPF--YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 261 ~~~l~~~~~~~--~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
.. +....... ...+.+..+ + ...............+|.+|+|||+-++. |..++|+..++.+.+++..+.
T Consensus 101 ~~-l~~~~~~~~~~~~~~l~~~-~-l~~~~~~~~~~LS~g~~~~lilDe~t~~~-----~~~~lD~~~~~~l~~ll~~l~ 172 (525)
T 1tf7_A 101 GK-LFILDASPDPEGQEVVGGF-D-LSALIERINYAIQKYRARRVSIDSVTSVF-----QQYDASSVVRRELFRLVARLK 172 (525)
T ss_dssp TS-EEEEECCCCSSCCSCCSSH-H-HHHHHHHHHHHHHHHTCSEEEEECSTTTS-----TTTCCHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEEecCcccchhhhhccc-C-HHHHHHHHHHHHHHcCCCEEEECCHHHHH-----HhcCCHHHHHHHHHHHHHHHH
Confidence 00 00000000 000111111 1 12222333444445789999999965543 334678999999999998886
Q ss_pred CCCCCCCeEEEEeeCCCCCCCc
Q psy11254 339 GFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld~ 360 (741)
. .++++|++||+++.+.+
T Consensus 173 ~----~g~tvl~itH~~~~~~~ 190 (525)
T 1tf7_A 173 Q----IGATTVMTTERIEEYGP 190 (525)
T ss_dssp H----HTCEEEEEEECSSSSSC
T ss_pred H----CCCEEEEEecCCCCccc
Confidence 4 36799999999988743
No 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.3e-14 Score=147.03 Aligned_cols=139 Identities=8% Similarity=0.090 Sum_probs=104.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhC----------ccEEEEechhhhcc----------c------cchHHHHHHHH
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLD----------ANFLKVVSSAIVDK----------Y------IGESARLIREM 575 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~----------~~~~~v~~~~l~~~----------~------~g~s~~~i~~~ 575 (741)
..+.+++|+||||||||++++.++.++. ..++.+++..+.+. . .+.+...++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 4567899999999999999999999983 35777886654322 1 23456678888
Q ss_pred HHHH--HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC----ccccCC
Q psy11254 576 FNYA--RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD----PALLRP 649 (741)
Q Consensus 576 f~~a--~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld----~al~rp 649 (741)
|... ....++|+||||+|.+. . +.++..+++..+ ....+++||+++|..+..+ +++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8875 34568999999999986 1 245666666443 2345789999999987654 44444
Q ss_pred CCcc-eEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 650 GRLD-RKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 650 gR~d-~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
||. ..|.|++++.++..+|++..+...
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 887 689999999999999999988754
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=4.9e-13 Score=145.81 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=132.3
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHh---------CccEEEEechhhhcc----------------ccch-HHHHHHHH
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSSAIVDK----------------YIGE-SARLIREM 575 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~---------~~~~~~v~~~~l~~~----------------~~g~-s~~~i~~~ 575 (741)
..+..++|+||||||||++++.+++.+ +.+++.+++....+. ..|. .......+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 345679999999999999999999988 777888886643211 1122 22334555
Q ss_pred HHHHHhc-CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC---CCCCccccCCCC
Q psy11254 576 FNYARNH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLRPGR 651 (741)
Q Consensus 576 f~~a~~~-~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~---~~ld~al~rpgR 651 (741)
+...... .|+||||||++.+...+ .....+..++..++......++.+|++||.+ +.+++++.+ |
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r 190 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--S 190 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--T
T ss_pred HHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--c
Confidence 5555433 48899999999975332 1346778888877654324578899999988 778899988 8
Q ss_pred cce-EEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccc--cc--hHHHHHHHhhhhhhhc-CCCcccHHHHH
Q psy11254 652 LDR-KIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTA--GG--FIYIATVSVIPELLED-TSPKQTVKEIL 725 (741)
Q Consensus 652 ~d~-~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s--~g--f~~~a~~~~~~~l~~~-~~~~~s~~~i~ 725 (741)
|.. .++|++|+.+++.+|++.++........+++.....+..... .| +...+....+-..+.. .....+.+++.
T Consensus 191 ~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 191 LGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp TTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 875 999999999999999998875311223455555555544433 13 3333444444333333 45678888888
Q ss_pred HHHHHH
Q psy11254 726 ALLLGV 731 (741)
Q Consensus 726 ~~l~g~ 731 (741)
.++..+
T Consensus 271 ~a~~~~ 276 (387)
T 2v1u_A 271 SARAEI 276 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 135
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.46 E-value=2.5e-13 Score=148.26 Aligned_cols=148 Identities=26% Similarity=0.363 Sum_probs=93.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEccccccc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV-DKYIGES-ARLIREMFNYAR----NHQPCIIFMDEIDAIG 596 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~-~~~~g~s-~~~i~~~f~~a~----~~~p~Vl~iDE~d~~~ 596 (741)
++.+++|+||||||||++|+++|..++.+++.++++.+. ..|+|+. ...+..++..+. ...++||||||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 456799999999999999999999999999999988875 4566654 344556665432 2357899999999998
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHccCCC-------------------CCCCeEEEEeeCCC------------------
Q psy11254 597 GRRFSEGTSADREIQRTLMELLNQMDGFD-------------------SLGQVKMIMATNRP------------------ 639 (741)
Q Consensus 597 ~~r~~~~~~~~~~~~~~l~~lL~~~~g~~-------------------~~~~v~vi~tTn~~------------------ 639 (741)
..|.......+.....+.+.||..|++.. ...++++|+|||..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 77543322222211124444555555320 11356778887721
Q ss_pred -----------------------CCCCccccCCCCcceEEEcCCCCHHHHHHHHHH
Q psy11254 640 -----------------------DTLDPALLRPGRLDRKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 640 -----------------------~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~ 672 (741)
..+.|+|+. ||+.++.|++++.++...|+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 124566665 9999999999999999999974
No 136
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.45 E-value=1.4e-14 Score=172.33 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=59.8
Q ss_pred cchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC
Q psy11254 274 SAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 353 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~ 353 (741)
...+..+|||+++++ +|++|+..+|.||+||| |++++|+.....+.+++..+. .+||++||
T Consensus 896 ~~~~~~LSGGQkQRV--aLArAL~~~P~LLLLDE----------PT~gLD~~s~~~L~~~L~~~g-------~tVIiISH 956 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKL--VLAAGTWQRPHLIVLDE----------PTNYLDRDSLGALSKALKEFE-------GGVIIITH 956 (986)
T ss_dssp HSCGGGCCHHHHHHH--HHHHHHTTCCSEEEEEC----------GGGTCCHHHHHHHHHHHHSCS-------SEEEEECS
T ss_pred CCCccccCHHHHHHH--HHHHHHHhCCCEEEEEC----------CccCCCHHHHHHHHHHHHHhC-------CEEEEEEC
Confidence 446789999999999 99999999999999999 999999999999988887653 28999999
Q ss_pred CCCCCCc
Q psy11254 354 RPDTLDP 360 (741)
Q Consensus 354 ~~~~ld~ 360 (741)
+++++..
T Consensus 957 D~e~v~~ 963 (986)
T 2iw3_A 957 SAEFTKN 963 (986)
T ss_dssp CHHHHTT
T ss_pred CHHHHHH
Confidence 9887653
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=4.9e-12 Score=137.80 Aligned_cols=240 Identities=20% Similarity=0.170 Sum_probs=141.1
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc---------CCCceeeeccc
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSSL 240 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l---------~~~~~~v~~~~ 240 (741)
.+++.|.++.++++.+.+..... -..+.+++|+|||||||||+++.++..+ +..+..+....
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 47799999999999987753211 1234569999999999999999999988 44454454322
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHH-HHHHHHHHH-hcCCeEEEeccccccccccCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL-IREMFNYAR-NHQPCIIFMDEIDAIGGRRFSE 318 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~-v~~~~~~A~-~~~P~ILllDEid~l~~~~~~p 318 (741)
......-+..+.. .++... ...|..... ...++..+. ...|+||||||+|.+...+
T Consensus 89 ~~~~~~~~~~l~~------------~l~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--- 146 (387)
T 2v1u_A 89 RETPYRVASAIAE------------AVGVRV-------PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--- 146 (387)
T ss_dssp SCSHHHHHHHHHH------------HHSCCC-------CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---
T ss_pred CCCHHHHHHHHHH------------HhCCCC-------CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---
Confidence 2111111111110 000000 011211222 222333322 2348899999999885431
Q ss_pred CCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC---CCCCccccCCCccce-eeecCCCCHHHHHhccccchhc-c
Q psy11254 319 GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLRPGRLDR-KIEIPLPNEQARLAHTWPISIH-A 393 (741)
Q Consensus 319 ~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~---~~ld~al~r~gr~d~-~i~~~~p~~~~r~~i~~~l~~~-~ 393 (741)
..+..+..++..+.......++.+|++||++ +.+++.+.+ |+.. .+.+++|+.++...++...... .
T Consensus 147 ------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 218 (387)
T 2v1u_A 147 ------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAF 218 (387)
T ss_dssp ------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHB
T ss_pred ------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhc
Confidence 1345666777666532113578999999988 567777777 7754 8999999998887773221110 0
Q ss_pred CCCcccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 394 GPIAKHGEIDYEAVVKLSD---SFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 394 ~~~~~~~~~~~~~la~~t~---g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
..... .+.....++..+. | +.+.+.++++.|...+.......++.+++..++...
T Consensus 219 ~~~~~-~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 219 NPGVL-DPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CTTTB-CSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 11111 1222455666665 4 446677888888777766566778888888777654
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.42 E-value=1.8e-12 Score=138.15 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=108.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 602 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~ 602 (741)
.+.+++|+||||||||++|++++..++.+++.++++.+.. ...+...|..+ ...+++|||||++.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~------ 103 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLS------ 103 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCC------
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccc------
Confidence 3467999999999999999999999999998888776522 12222233221 1457899999999863
Q ss_pred CCcccHHHHHHHHHHHHHcc-----CCC--------CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 603 GTSADREIQRTLMELLNQMD-----GFD--------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 603 ~~~~~~~~~~~l~~lL~~~~-----g~~--------~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
......+..+++... +.. ...++.+|++||++..+++++.+ ||+.++.|++|+.+++.++
T Consensus 104 -----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~ 176 (324)
T 1hqc_A 104 -----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQG 176 (324)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHH
T ss_pred -----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHH
Confidence 233455666666532 000 11357899999999999999998 9999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccc
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPF 694 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~ 694 (741)
++.++.... ..+++.+...+...
T Consensus 177 l~~~~~~~~--~~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 177 VMRDARLLG--VRITEEAALEIGRR 199 (324)
T ss_dssp HHHHHHTTT--CCCCHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHH
Confidence 998876532 24555555544443
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=3.1e-13 Score=131.70 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=104.5
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceeee
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKVV 237 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v~ 237 (741)
..++++.|.++.++++.+.+.. ..+.+++|+||||||||++++.++..+.. .+..+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3578899999999998887642 22356899999999999999999998733 111111
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHH-hcCCeEEEeccccccccc
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYAR-NHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~-~~~P~ILllDEid~l~~~ 314 (741)
. .... ..+.|.....++..+..+. ...|.||+|||+|.+...
T Consensus 86 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 86 M-----------------------------------GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp H-----------------------------------HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred H-----------------------------------HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 1 0111 2344555666666666553 456889999999999765
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
+..... ......+..++. ..++.+|++|+.++ .+++++.+ ||+ .+.++.|+..++.++
T Consensus 131 ~~~~~~---~~~~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 131 GKADGA---MDAGNMLKPALA-------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAI 193 (195)
T ss_dssp -----C---CCCHHHHHHHHH-------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTT
T ss_pred Ccccch---HHHHHHHHHhhc-------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHH
Confidence 422111 112333333332 24678899998876 68899988 887 589999999998776
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.42 E-value=2.8e-13 Score=131.60 Aligned_cols=128 Identities=23% Similarity=0.429 Sum_probs=96.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhc-CCeEEEE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNH-QPCIIFM 589 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~-~p~Vl~i 589 (741)
.+.+++|+||||||||+++++++..+ +.+++.++...+. ..+.|.....++.++..+... .|+||||
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 35679999999999999999999987 6678888877765 345666677788888877655 6889999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCC
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~ 662 (741)
||++.+.+.+..... .....+.+..+++. .++.+|++||.+. .+|+++.| ||+. |+++.|+
T Consensus 122 De~~~l~~~~~~~~~--~~~~~~~l~~~~~~-------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 122 DEIHTVVGAGAVAEG--ALDAGNILKPMLAR-------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TTGGGGSSSSSSCTT--SCCTHHHHHHHHHT-------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred eCHHHhccccccccc--chHHHHHHHHHHhc-------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 999999766542111 12234445555432 3577999999875 68999999 9995 9999986
No 141
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.42 E-value=3.5e-12 Score=165.74 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchH--HHHHHHHHHHHH-hcCCeEEEEcccc
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGES--ARLIREMFNYAR-NHQPCIIFMDEID 593 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s--~~~i~~~f~~a~-~~~p~Vl~iDE~d 593 (741)
..|+.++||+|++||||+++++..|-..+..++.+..+ ..| |.. ...++.++..|- ...|.|++|+|..
T Consensus 1606 ~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~---~~Y-~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1606 KQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIH---RHS-NLSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCC---TTC-CHHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred cCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEee---CCC-CHHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 35667899999999999999999999999998887654 223 333 356888998884 4568899998864
No 142
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.41 E-value=9.9e-13 Score=139.34 Aligned_cols=138 Identities=23% Similarity=0.396 Sum_probs=99.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccc-----c-------chHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKY-----I-------GESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~-----~-------g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
..++|+||||||||++|+++++.+ +.+++.++++.+.... + |... ...+.........+||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEE
Confidence 469999999999999999999998 4568888887654321 1 1110 012333334445689999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC------CCCeEEEEeeCC-------------------------
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS------LGQVKMIMATNR------------------------- 638 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~------~~~v~vi~tTn~------------------------- 638 (741)
||+|.+ +......+.++|+...-... ..++++|+|||.
T Consensus 126 DEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~ 194 (311)
T 4fcw_A 126 DAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKV 194 (311)
T ss_dssp ETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHH
T ss_pred eChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHH
Confidence 999985 23456666666665331111 136889999999
Q ss_pred -CCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCc
Q psy11254 639 -PDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPI 677 (741)
Q Consensus 639 -~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~ 677 (741)
...++++|++ ||+.++.|++|+.+++..|++.++..+
T Consensus 195 ~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 195 LQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4578888987 999999999999999999999988654
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.40 E-value=2.3e-13 Score=145.48 Aligned_cols=154 Identities=18% Similarity=0.323 Sum_probs=107.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 600 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~ 600 (741)
+.+++|+||||||||++++++++.+ +.+++.+++.++...+.+.........|.... ..++||||||++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-
Confidence 4679999999999999999999998 78899999988876665444332222333322 247899999999975322
Q ss_pred CCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC---CCCccccCCCCcc--eEEEcCCCCHHHHHHHHHHhhc
Q psy11254 601 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD---TLDPALLRPGRLD--RKIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 601 ~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~---~ld~al~rpgR~d--~~i~~~~p~~~~r~~i~~~~~~ 675 (741)
..+..+..+++.+. ..+..+|+.++|.+. .+++++.+ ||+ ..++|++ +.+++.+|++.++.
T Consensus 115 --------~~~~~l~~~l~~~~---~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 115 --------RTQIEFFHIFNTLY---LLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp --------HHHHHHHHHHHHHH---HTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH---HCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 22344444444332 123455666666665 68899988 887 7899999 99999999999886
Q ss_pred CccccCCCCccccccccccc
Q psy11254 676 PIAKHGEIGDAATKWVLPFT 695 (741)
Q Consensus 676 ~~~~~~~~~~~a~~~l~~~~ 695 (741)
.. +..+++.+..++....
T Consensus 181 ~~--~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 181 EF--NLELRKEVIDYLLENT 198 (324)
T ss_dssp HT--TCCCCHHHHHHHHHHC
T ss_pred hc--CCCCCHHHHHHHHHhC
Confidence 42 2356666666555544
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.40 E-value=4.1e-12 Score=135.43 Aligned_cols=215 Identities=21% Similarity=0.244 Sum_probs=138.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+|+++.|.+..++.+.+.+.... ..+ ..+.+++|+||||||||+++++++..++..+..+.+.....
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------ARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------HHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------ccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 478899999999999998876321 101 23467999999999999999999999887776554321100
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
...+...|..+ ..++++|||||+|.+. ...+
T Consensus 77 -------------------------------------~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~ 107 (324)
T 1hqc_A 77 -------------------------------------PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAE 107 (324)
T ss_dssp -------------------------------------HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHH
T ss_pred -------------------------------------hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchH
Confidence 01111122111 2467899999987652 3455
Q ss_pred HHHHHHHHhccC-----CC--------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC
Q psy11254 328 RTLMELLNQMDG-----FD--------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 328 ~~l~~lL~~l~~-----~~--------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
..+..++....- .. ...++.+|++||+...+++++.+ ||+..+.++.|+.+++..+ +..+..
T Consensus 108 ~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~---l~~~~~ 182 (324)
T 1hqc_A 108 EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQG---VMRDAR 182 (324)
T ss_dssp HHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHH---HHHHHH
Confidence 666666665320 00 01357899999999999999887 8888999999999888766 333221
Q ss_pred CCccc-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHH
Q psy11254 395 PIAKH-GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449 (741)
Q Consensus 395 ~~~~~-~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 449 (741)
..... .......++..+.|+. +.+.+++..+...+.......++.+++..+...
T Consensus 183 ~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 183 LLGVRITEEAALEIGRRSRGTM-RVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp TTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 11111 1112456667776654 677788777665554444556777776665544
No 145
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.39 E-value=3.1e-13 Score=150.34 Aligned_cols=190 Identities=18% Similarity=0.307 Sum_probs=121.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~ 598 (741)
+..++|+||||||||++++++++.+ +.+++.+++.++...+.+.........|.......|+||||||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4579999999999999999999988 77788899888765554333222122333333336899999999997543
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCC-CCC---CCccccCCCCcc--eEEEcCCCCHHHHHHHHHH
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR-PDT---LDPALLRPGRLD--RKIEIPLPNEQARLEILKI 672 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~-~~~---ld~al~rpgR~d--~~i~~~~p~~~~r~~i~~~ 672 (741)
+ ..+..+..+++.+. ..+.. +|+|||. +.. +++++.+ ||+ .++.+++|+.++|.+|++.
T Consensus 210 ~---------~~q~~l~~~l~~l~---~~~~~-iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELH---DSGKQ-IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARK 274 (440)
T ss_dssp H---------HHHHHHHHHHHHHH---TTTCE-EEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHH---HCCCe-EEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 1 22344445554432 12234 4555554 444 7889988 887 8899999999999999998
Q ss_pred hhcCccccCCCCcccccccccc-cccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHH
Q psy11254 673 HAGPIAKHGEIGDAATKWVLPF-TAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLG 730 (741)
Q Consensus 673 ~~~~~~~~~~~~~~a~~~l~~~-~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g 730 (741)
++... +..+++....+++.. ..+.+...+++..+..........++.+++..++..
T Consensus 275 ~~~~~--~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 275 MLEIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHH--TCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 87632 234555555554433 234444444444444444333445777777766543
No 146
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=9.1e-13 Score=158.71 Aligned_cols=143 Identities=24% Similarity=0.411 Sum_probs=98.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhc-CCeEEE
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNH-QPCIIF 588 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~-~p~Vl~ 588 (741)
....+++|+||||||||++++++|..+ +.+++.++.+.+. .+|.|+.+..++.+|..+... .|+|||
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 268 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILF 268 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 445679999999999999999999987 7789999988887 578899999999999999875 689999
Q ss_pred EcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC----CCCccccCCCCcceEEEcCCCCHH
Q psy11254 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD----TLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 589 iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~----~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
|||++.+.+.+...+ .......+..++.. +++.+|++||.++ .+|+++.| ||+. |+|+.|+.+
T Consensus 269 IDEi~~l~~~~~~~g---~~~~~~~L~~~l~~-------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~ 335 (854)
T 1qvr_A 269 IDELHTVVGAGKAEG---AVDAGNMLKPALAR-------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVE 335 (854)
T ss_dssp ECCC----------------------HHHHHT-------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHH
T ss_pred EecHHHHhccCCccc---hHHHHHHHHHHHhC-------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHH
Confidence 999999986653321 12334455555542 3566999999775 58999999 9996 999999999
Q ss_pred HHHHHHHHhhcCc
Q psy11254 665 ARLEILKIHAGPI 677 (741)
Q Consensus 665 ~r~~i~~~~~~~~ 677 (741)
++.+||+.++...
T Consensus 336 e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 336 ETISILRGLKEKY 348 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh
Confidence 9999998776543
No 147
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.38 E-value=6.3e-12 Score=139.84 Aligned_cols=192 Identities=15% Similarity=0.238 Sum_probs=117.9
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhc-----CCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhh
Q psy11254 205 PKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK 279 (741)
Q Consensus 205 ~~GvlL~Gp~GtGKTtL~r~ia~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (741)
+.+++|+||||||||||+++|++.+ +..+..++...+ ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~-----------------------------------~~~ 174 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-----------------------------------LND 174 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH-----------------------------------HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH-----------------------------------HHH
Confidence 4568999999999999999999988 334444432111 011
Q ss_pred hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC-CC-
Q psy11254 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP-DT- 357 (741)
Q Consensus 280 ~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~-~~- 357 (741)
+.+.........|......+|+||||||++.+..+ ...+..+..+++.+.. .+..+|++||++ ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~~----~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELHD----SGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHHT----TTCEEEEEESSCGGGC
T ss_pred HHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH----CCCeEEEEECCCHHHH
Confidence 11110000011233333347899999999987532 2345667777766543 345677788763 33
Q ss_pred --CCccccCCCccc--eeeecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 358 --LDPALLRPGRLD--RKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 358 --ld~al~r~gr~d--~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
+++.+.+ ||+ ..+.+++|+.++|..++....... ...... .....++..+.| +.+++..++..+...+...
T Consensus 242 ~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~-~~~i~~-e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 242 SEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIE-HGELPE-EVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp SSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHH-TCCCCT-THHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 6777777 775 678999999999988732221111 111112 225667777654 7788888888877666433
Q ss_pred hccccchHhHHHHHHHh
Q psy11254 434 EREYVTQEDFMKAVRKV 450 (741)
Q Consensus 434 ~~~~i~~~d~~~a~~~~ 450 (741)
. ..++.+++..+++..
T Consensus 317 ~-~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 317 G-KEVDLKEAILLLKDF 332 (440)
T ss_dssp S-SCCCHHHHHHHTSTT
T ss_pred C-CCCCHHHHHHHHHHH
Confidence 3 357777777766543
No 148
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.38 E-value=1.7e-12 Score=154.81 Aligned_cols=146 Identities=25% Similarity=0.396 Sum_probs=111.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhh--ccccchHHHHHHHHHHHHHhcCCeE
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIV--DKYIGESARLIREMFNYARNHQPCI 586 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~--~~~~g~s~~~i~~~f~~a~~~~p~V 586 (741)
+....+.+++|+||||||||++|++++..+ +..++.++.+.+. .+|.|+.+..++.+|+.+....++|
T Consensus 202 l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~i 281 (758)
T 1r6b_X 202 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_dssp HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEE
T ss_pred HhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeE
Confidence 344566789999999999999999999987 5567777777776 5688999999999999998878899
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCC
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLP 661 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p 661 (741)
|||||++.+.+.+....+ ..+..+ +|. .+-..+++.+|++||.++ .+|+++.| ||+ .+.|+.|
T Consensus 282 L~IDEi~~l~~~~~~~~~--~~~~~~----~L~---~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p 349 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGG--QVDAAN----LIK---PLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEP 349 (758)
T ss_dssp EEETTTTTTTTSCCSSSC--HHHHHH----HHS---SCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCC
T ss_pred EEEechHHHhhcCCCCcc--hHHHHH----HHH---HHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCC
Confidence 999999999876533211 222222 222 122345788999998653 57899999 998 6999999
Q ss_pred CHHHHHHHHHHhhcC
Q psy11254 662 NEQARLEILKIHAGP 676 (741)
Q Consensus 662 ~~~~r~~i~~~~~~~ 676 (741)
+.+++.+||+.....
T Consensus 350 ~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 350 SIEETVQIINGLKPK 364 (758)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999977653
No 149
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.37 E-value=8.3e-14 Score=134.61 Aligned_cols=132 Identities=11% Similarity=0.158 Sum_probs=82.1
Q ss_pred hCCCCCCC--ceEEcCCCChHHHHHH------------HHHHhcCCCceeeecccccchhhHHHHHhhhhhhhccccccc
Q psy11254 200 VGITPPKG--CLLYGPPGTGKTLLAR------------AVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLE 265 (741)
Q Consensus 200 ~~l~~~~G--vlL~Gp~GtGKTtL~r------------~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (741)
++|++++| ++|+||||||||||+| .+.|.+.++.+...... ..............
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 70 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG--AAFDVLHYIVSKRL--------- 70 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH--HHHHHHHHHHHHHH---------
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH--HHHHHHHHHHHHHH---------
Confidence 56777788 7899999999999999 55555443322211100 00001100000000
Q ss_pred ccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH----------------HHHH
Q psy11254 266 KTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE----------------IQRT 329 (741)
Q Consensus 266 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~----------------~~~~ 329 (741)
..+.... .+.....+|+.++++ .+++|+..+|.+|++|| |++++|+. ....
T Consensus 71 ~~g~~~~-~~~~~~~s~g~~qrv--~iAral~~~p~~lllDE----------Pt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 71 QLGKLTV-VDATNVQESARKPLI--EMAKDYHCFPVAVVFNL----------PEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp HTTCCEE-EESCCCSHHHHHHHH--HHHHHTTCEEEEEEECC----------CHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred hCCCeEE-EECCCCCHHHHHHHH--HHHHHcCCcEEEEEEeC----------CHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 0011100 011123477888888 99999999999999999 99999988 4466
Q ss_pred HHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 330 LMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 330 l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
+.+++..+.. .+.++|++||+++.+.
T Consensus 138 l~~~l~~l~~----~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 138 MKKSIKGLQR----EGFRYVYILNSPEEVE 163 (171)
T ss_dssp HHHHSTTHHH----HTCSEEEEECSHHHHH
T ss_pred hhhhhhhHHh----cCCcEEEEeCCHHHhh
Confidence 7777665543 3678999999987664
No 150
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.37 E-value=4.7e-13 Score=150.21 Aligned_cols=141 Identities=26% Similarity=0.383 Sum_probs=99.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcc
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 591 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE 591 (741)
....+++|+||||||||++|+++|..+ +.+++.++++ .+|.|+.+..++.+|..+....|+|||||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD- 274 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-
Confidence 445689999999999999999999997 6678887777 77888888889999999998889999999
Q ss_pred cccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHHHH
Q psy11254 592 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQAR 666 (741)
Q Consensus 592 ~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~~r 666 (741)
+ .. . ..+.|+..|+ .+++.+|++||.++ .+|+++.| ||+. |.|+.|+.+++
T Consensus 275 ----~--------~~--~---a~~~L~~~L~----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~ 330 (468)
T 3pxg_A 275 ----A--------AI--D---ASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDES 330 (468)
T ss_dssp ----C---------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHH
T ss_pred ----C--------ch--h---HHHHHHHhhc----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHH
Confidence 0 00 1 1222333332 34788999999988 69999999 9985 99999999999
Q ss_pred HHHHHHhhcCcccc--CCCCcccccc
Q psy11254 667 LEILKIHAGPIAKH--GEIGDAATKW 690 (741)
Q Consensus 667 ~~i~~~~~~~~~~~--~~~~~~a~~~ 690 (741)
..|++.++.....+ ..+++.+...
T Consensus 331 ~~iL~~~~~~~~~~~~~~i~~~al~~ 356 (468)
T 3pxg_A 331 IQILQGLRDRYEAHHRVSITDDAIEA 356 (468)
T ss_dssp HHHHHHTTTTSGGGSSCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999887764322 3444444433
No 151
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=3.1e-12 Score=139.56 Aligned_cols=190 Identities=21% Similarity=0.240 Sum_probs=125.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh-----------CccEEEEechhhh-cc-----------------ccchH-HHHH
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL-----------DANFLKVVSSAIV-DK-----------------YIGES-ARLI 572 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~-----------~~~~~~v~~~~l~-~~-----------------~~g~s-~~~i 572 (741)
.+..++|+||||||||++++++++.+ +.+++.+++.+.. +. +.|.+ ...+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 34679999999999999999999987 7888888866543 10 11111 2334
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHH-HHHHHHHccCCCCCCCeEEEEeeCCC---CCCCccccC
Q psy11254 573 REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT-LMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLR 648 (741)
Q Consensus 573 ~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~-l~~lL~~~~g~~~~~~v~vi~tTn~~---~~ld~al~r 648 (741)
..++..+.... +||||||++.+...+ . ... +..++... .++.+|+|||.+ +.+++++.+
T Consensus 124 ~~l~~~l~~~~-~vlilDEi~~l~~~~------~----~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s 186 (384)
T 2qby_B 124 DKIKNGTRNIR-AIIYLDEVDTLVKRR------G----GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS 186 (384)
T ss_dssp HHHHHHHSSSC-EEEEEETTHHHHHST------T----SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH
T ss_pred HHHHHHhccCC-CEEEEECHHHhccCC------C----CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh
Confidence 55555554444 499999999985332 0 123 44454433 578899999987 678899887
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccc--cch--HHHHHHHhhhhhhhcCCCcccHHHH
Q psy11254 649 PGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTA--GGF--IYIATVSVIPELLEDTSPKQTVKEI 724 (741)
Q Consensus 649 pgR~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s--~gf--~~~a~~~~~~~l~~~~~~~~s~~~i 724 (741)
||...++|++|+.++..+|++.++...-....+++.....+..... .|. ...+....+-.++. .....+.+++
T Consensus 187 --r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-~~~~i~~~~v 263 (384)
T 2qby_B 187 --SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-GGGIIRKEHV 263 (384)
T ss_dssp --TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-SSSCCCHHHH
T ss_pred --cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-CCCccCHHHH
Confidence 8888999999999999999998875211123455555544444332 132 23333444333333 4467888888
Q ss_pred HHHHHHHH
Q psy11254 725 LALLLGVF 732 (741)
Q Consensus 725 ~~~l~g~~ 732 (741)
..++..+.
T Consensus 264 ~~~~~~~~ 271 (384)
T 2qby_B 264 DKAIVDYE 271 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776654
No 152
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.37 E-value=9.5e-12 Score=156.67 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=88.0
Q ss_pred eccCCChHHHHhcC---CCCCCceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhh----hccc------------
Q psy11254 507 ELPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAI----VDKY------------ 564 (741)
Q Consensus 507 ~~~~~~~~~~~~~~---~~~~~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l----~~~~------------ 564 (741)
..+-..+.+..-++ +.+++.++|+||||||||+||.+++.+.. .....++..+. ..+.
T Consensus 1407 ~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~ 1486 (2050)
T 3cmu_A 1407 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 1486 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEEC
T ss_pred cccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeec
Confidence 34555666666666 88899999999999999999999987753 33333433321 1111
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC---CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCC
Q psy11254 565 IGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR---FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR 638 (741)
Q Consensus 565 ~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r---~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~ 638 (741)
+..+++.++.++..++...|++|||||++.+.+.+ +..+++....-.+.+.++|.+|.+.....++++| +||.
T Consensus 1487 ~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq 1562 (2050)
T 3cmu_A 1487 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1562 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEEC
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE-EEcc
Confidence 22456778888889999999999999999988743 1112212111346778888888877666566544 4553
No 153
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.36 E-value=1.7e-13 Score=170.98 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=106.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chhh
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSKE 246 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~~ 246 (741)
..+++++++++++| ++|+||||||||||+++|+|.+.+..|++...... +..+
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 482 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHH
Confidence 35899999999999 88999999999999999999999988887643210 1112
Q ss_pred HHHHHhhhhhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccccc
Q psy11254 247 DMAILMGNQLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~ 315 (741)
++.....+.....+...++.. ++.....+....+|||++|++ ++++|+..+|+||+|||
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri--aiARal~~~p~iliLDE-------- 552 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI--AIARALVRNPKILLLDE-------- 552 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH--HHHHHHHHCCSEEEEES--------
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH--HHHHHHhcCCCEEEEEC--------
Confidence 222211110011111111111 122222334567999999999 99999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|++++|+++.+.+.+.+..+.. +.++|++||+++.+.
T Consensus 553 --pts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 553 --ATSALDTESEAVVQAALDKARE-----GRTTIVIAHRLSTVR 589 (1284)
T ss_dssp --TTCSSCHHHHHHHHHHHHHHHT-----TSEEEEECSCHHHHT
T ss_pred --CCCCCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHHH
Confidence 9999999999999988876642 569999999988664
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.36 E-value=1.2e-12 Score=146.97 Aligned_cols=184 Identities=26% Similarity=0.359 Sum_probs=118.0
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC----------ceeee
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN----------FLKVV 237 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~----------~~~v~ 237 (741)
-+++++.|-++.++++.+.+... ...+++|+||||||||++++++|..+... +..+.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~-------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 46788999999999999887531 12458999999999999999999987321 21111
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
. . ..|.|....+++..|..+....|.|||||-
T Consensus 244 ~-----------------------------------~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~---------- 275 (468)
T 3pxg_A 244 M-----------------------------------G---TKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------- 275 (468)
T ss_dssp -----------------------------------------------CTTHHHHHHHHHTCCCCEEEECC----------
T ss_pred C-----------------------------------C---ccccchHHHHHHHHHHHHHhcCCeEEEEeC----------
Confidence 1 1 456677667778889988888899999991
Q ss_pred CCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhc
Q psy11254 318 EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIH 392 (741)
Q Consensus 318 p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~ 392 (741)
. .| .. ..| ......+.+.+|++||..+ .+++++.+ ||. .+.++.|+.+++..+ +...
T Consensus 276 ~---~~--a~----~~L---~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~i---L~~~ 337 (468)
T 3pxg_A 276 A---ID--AS----NIL---KPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQI---LQGL 337 (468)
T ss_dssp --------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHH---HHHT
T ss_pred c---hh--HH----HHH---HHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHH---HHHH
Confidence 1 11 11 122 2222346789999999887 68999999 997 499999999999888 4443
Q ss_pred cCCCcccCCCC-----HHHHHHhcCCC-----CHHHHHHHHHHHHHHH
Q psy11254 393 AGPIAKHGEID-----YEAVVKLSDSF-----NGADLRNVCTEAGLFA 430 (741)
Q Consensus 393 ~~~~~~~~~~~-----~~~la~~t~g~-----~gadi~~l~~~A~~~a 430 (741)
...+..+.++. ...++..+.+| .......++.+|+..+
T Consensus 338 ~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 338 RDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp TTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 33332222222 33444444433 3446667777766543
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.36 E-value=2.5e-13 Score=132.00 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=82.5
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--chhhHHHHHhhhhhhhcccccccccccC--CCccchhhhhcch
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--TSKEDMAILMGNQLKRRSTHHLEKTYFP--FYSSAIVDKYIGE 283 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~G~ 283 (741)
++|+||||||||||+++|+|.++..+......... .....+++..+.. ......+...++. ......+..+|||
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT--EGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET--TCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC--cHHHHHHHhhcCCccccccccccCcCHH
Confidence 57999999999999999999986332211100000 0000000000000 0000111111111 1124456678999
Q ss_pred HHHHHHHHHHHH-----HhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC---CC
Q psy11254 284 SARLIREMFNYA-----RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN---RP 355 (741)
Q Consensus 284 ~~~~v~~~~~~A-----~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~---~~ 355 (741)
+++++ .+++| +..+|++|+|||++ |++++|+...+.+.+++.. .+.++|++|| +.
T Consensus 81 ~~qr~--~la~aa~~~~l~~~p~llilDEig--------p~~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~ 143 (178)
T 1ye8_A 81 EELAI--PILERAYREAKKDRRKVIIIDEIG--------KMELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVH 143 (178)
T ss_dssp HHHHH--HHHHHHHHHHHHCTTCEEEECCCS--------TTGGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCS
T ss_pred HHHHH--HHHhhccccccccCCCEEEEeCCC--------CcccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCc
Confidence 99988 88886 89999999999964 7889999999888888754 2446777775 55
Q ss_pred CCCCccccC
Q psy11254 356 DTLDPALLR 364 (741)
Q Consensus 356 ~~ld~al~r 364 (741)
++++..+.|
T Consensus 144 ~~~~~i~~r 152 (178)
T 1ye8_A 144 PLVKEIRRL 152 (178)
T ss_dssp HHHHHHHTC
T ss_pred hHHHHHHhc
Confidence 555544444
No 156
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.36 E-value=7.2e-13 Score=141.51 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=105.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+++++.|.+++++.+++.+.. -..+..++++||||||||+++++++..++.++..+..+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~------ 84 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC------ 84 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC------
T ss_pred CCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc------
Confidence 4688999999999999998862 1334457788999999999999999999887777664210
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh-----cCCeEEEeccccccccccCCCCCCc
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN-----HQPCIIFMDEIDAIGGRRFSEGTSA 322 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~-----~~P~ILllDEid~l~~~~~~p~~~l 322 (741)
+ ...++..+..+.. .+++||||||+|.+.+
T Consensus 85 ----------------------------------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------- 119 (324)
T 3u61_B 85 ----------------------------------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------- 119 (324)
T ss_dssp ----------------------------------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------
T ss_pred ----------------------------------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------
Confidence 1 1122222222222 2678999999988741
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 323 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 323 D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
.+.+..|..++.... .++.+|++||++..+++++.+ |+. .+.|+.|+..++..+
T Consensus 120 -~~~~~~L~~~le~~~-----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 120 -AESQRHLRSFMEAYS-----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEM 173 (324)
T ss_dssp -HHHHHHHHHHHHHHG-----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHH
T ss_pred -HHHHHHHHHHHHhCC-----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHH
Confidence 334566677766543 356899999999999999988 774 699999998887554
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.36 E-value=2.8e-12 Score=142.50 Aligned_cols=178 Identities=22% Similarity=0.313 Sum_probs=118.3
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHh----cCCeEEEEcccccccCCCC
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRF 600 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~----~~p~Vl~iDE~d~~~~~r~ 600 (741)
.+++|+||||||||++|+++++.++.+|+.++.... ....++.+|..+.. ..++||||||++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-- 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-- 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--
Confidence 468999999999999999999999999998886432 23345666666553 35799999999987422
Q ss_pred CCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEee--CCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 601 SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT--NRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 601 ~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tT--n~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
.+. .||..++. +.+++|++| |....+++++++ |+. ++.|++|+.+++..|++.++....
T Consensus 122 ---------~q~---~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 122 ---------QQD---AFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp ---------------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTT
T ss_pred ---------HHH---HHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHh
Confidence 122 23444442 346677766 455689999998 887 678999999999999999887532
Q ss_pred -----ccCCCCcccccccccc-cccchHHHHHHHhhhhhhh-c--CCCcccHHHHHHHHHH
Q psy11254 679 -----KHGEIGDAATKWVLPF-TAGGFIYIATVSVIPELLE-D--TSPKQTVKEILALLLG 730 (741)
Q Consensus 679 -----~~~~~~~~a~~~l~~~-~s~gf~~~a~~~~~~~l~~-~--~~~~~s~~~i~~~l~g 730 (741)
....+++.+...+... ..+.+...+.++.+-.... + ....++.+++..++..
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 1234666666665554 2233334444443333332 1 2246788888776653
No 158
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.36 E-value=4.2e-12 Score=136.01 Aligned_cols=134 Identities=20% Similarity=0.336 Sum_probs=92.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEech------hhhccccchHHHHHHHHHHHHHhcC---CeEEEEcccccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS------AIVDKYIGESARLIREMFNYARNHQ---PCIIFMDEIDAI 595 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~------~l~~~~~g~s~~~i~~~f~~a~~~~---p~Vl~iDE~d~~ 595 (741)
.+++|+||||||||++|+++++.++.+++.+.+. ++.+........ .-|. .... .+||||||++.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEEE--EEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---CceE--eccCcccccEEEEEccccC
Confidence 5799999999999999999999999998888753 233322111000 0000 0011 379999999984
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHcc----C--CCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLNQMD----G--FDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQ 664 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~~~~----g--~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~ 664 (741)
+......+.+.+++.. | .....++++|+|+|..+ .+++++++ ||+..+++++|+.+
T Consensus 122 -----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~ 188 (331)
T 2r44_A 122 -----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKE 188 (331)
T ss_dssp -----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHH
T ss_pred -----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHH
Confidence 2334555666666431 1 01123567888888443 38999998 99999999999999
Q ss_pred HHHHHHHHhhcC
Q psy11254 665 ARLEILKIHAGP 676 (741)
Q Consensus 665 ~r~~i~~~~~~~ 676 (741)
++.+|++.++..
T Consensus 189 ~~~~il~~~~~~ 200 (331)
T 2r44_A 189 SELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHhcccc
Confidence 999999988764
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.35 E-value=1.5e-11 Score=122.65 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=113.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhccccchHHHHHHHHHH-HHH-----hcCCeEEEEcccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVDKYIGESARLIREMFN-YAR-----NHQPCIIFMDEID 593 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~~~~g~s~~~i~~~f~-~a~-----~~~p~Vl~iDE~d 593 (741)
.+++|+||+|||||++++.++..+ ...++.++.++..+. ..+...+. ... ...++||||||++
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 112 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEAD 112 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChh
Confidence 349999999999999999999876 345777766543221 11222222 222 2467899999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHh
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~ 673 (741)
.+. ......+..+++.. ..++.+|++||.++.+++++.+ |+. .++|++|+.+++.++++.+
T Consensus 113 ~l~-----------~~~~~~l~~~l~~~-----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 113 ALT-----------ADAQAALRRTMEMY-----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp GSC-----------HHHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHH
T ss_pred hcC-----------HHHHHHHHHHHHhc-----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHH
Confidence 863 22344555555542 3467899999999999999998 888 8999999999999999987
Q ss_pred hcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 674 AGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 674 ~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
+.... ..+++.....+... ++|.... +...+..+.... ...+.+++..++
T Consensus 174 ~~~~~--~~~~~~~~~~l~~~-~~g~~r~-l~~~l~~~~~~~-~~I~~~~v~~~~ 223 (226)
T 2chg_A 174 CEKEG--VKITEDGLEALIYI-SGGDFRK-AINALQGAAAIG-EVVDADTIYQIT 223 (226)
T ss_dssp HHHHT--CCBCHHHHHHHHHH-HTTCHHH-HHHHHHHHHHTC-SCBCHHHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHH-cCCCHHH-HHHHHHHHHhcC-ceecHHHHHHHh
Confidence 75322 23555555544432 3333332 222333333222 578888887765
No 160
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.35 E-value=2.3e-13 Score=159.58 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=65.4
Q ss_pred ccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcCC---eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 264 LEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQP---CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 264 l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~P---~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
+..+++.. .....+.++|||++|++ ++++|+..+| .|||+|| |++++|+.....+.+++..+..
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv--~iAraL~~~p~~p~llllDE----------Pt~~LD~~~~~~i~~~l~~l~~ 594 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRV--KLAAELHRRSNGRTLYILDE----------PTTGLHVDDIARLLDVLHRLVD 594 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHH--HHHHHHHSCCCSCEEEEEES----------TTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCchhhccCCchhCCHHHHHHH--HHHHHHhhCCCCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH
Confidence 33344432 24667899999999999 9999998876 5999999 9999999999999999998864
Q ss_pred CCCCCCeEEEEeeCCCCCC
Q psy11254 340 FDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~l 358 (741)
.+.+||++||+++.+
T Consensus 595 ----~g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 595 ----NGDTVLVIEHNLDVI 609 (670)
T ss_dssp ----TTCEEEEECCCHHHH
T ss_pred ----CCCEEEEEeCCHHHH
Confidence 367999999998754
No 161
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.35 E-value=4.3e-12 Score=138.50 Aligned_cols=130 Identities=22% Similarity=0.388 Sum_probs=71.4
Q ss_pred ccccChHHHHHHHHHHhhccCCChHH------------------HhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPEL------------------FQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~------------------~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
..|.|.+++|+.|...+..++..... ..++ -..+.+++|+||||||||++|+++|..++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~-~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccc-ccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35789999999999887433222111 1111 1234569999999999999999999999888
Q ss_pred ceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchH-HHHHHHHHHHH----HhcCCeEEEecc
Q psy11254 233 FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES-ARLIREMFNYA----RNHQPCIIFMDE 307 (741)
Q Consensus 233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~-~~~v~~~~~~A----~~~~P~ILllDE 307 (741)
+..+....+.. ..|.|.. ...+...+..+ ....++||||||
T Consensus 100 ~~~~~~~~~~~----------------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 145 (376)
T 1um8_A 100 IAISDATSLTE----------------------------------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDE 145 (376)
T ss_dssp EEEEEGGGCC------------------------------------------CTHHHHHHHHHTTTCHHHHTTSEEEEET
T ss_pred EEEecchhhhh----------------------------------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcC
Confidence 87775421110 1233332 22233333322 134678999999
Q ss_pred ccccccccCCCCCCccHH---HHHHHHHHHH
Q psy11254 308 IDAIGGRRFSEGTSADRE---IQRTLMELLN 335 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~---~~~~l~~lL~ 335 (741)
+|.+...+.++..+.|.. .+..|..++.
T Consensus 146 i~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 146 IDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp GGGC--------------CHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 999988765554444443 4555666654
No 162
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.35 E-value=2.9e-13 Score=168.89 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=104.5
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~~ 247 (741)
.+++++++++++| ++|+||||||||||+++|+|.+.+..|++........ .++
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 4789999999999 8899999999999999999999998888764321100 011
Q ss_pred HHHHhhh--hhhhccccccccc-----------ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 248 MAILMGN--QLKRRSTHHLEKT-----------YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 248 ~~~~~~~--~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+...... .....+...++.. ++.....+....+|||++|++ ++++|+..+|.||+|||
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv--~iARal~~~p~iLiLDE------- 1197 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI--AIARALVRQPHILLLDE------- 1197 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH--HHHHHHHHCCSSEEEES-------
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH--HHHHHHHcCCCEEEEeC-------
Confidence 1000000 0000001111111 111112233457999999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
||+++|+...+.+.+.+.... .+.++|++|||++.+.
T Consensus 1198 ---pTs~lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1198 ---ATSALDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp ---CSSSCCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGGG
T ss_pred ---CcccCCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHHH
Confidence 999999999999999997754 2568999999999874
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.34 E-value=2.7e-13 Score=170.50 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=91.9
Q ss_pred ccceeccCCChHHHHhc---CCCCCCceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhhhccc----cc------
Q psy11254 503 KPVIELPLLNPELFQRV---GITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAIVDKY----IG------ 566 (741)
Q Consensus 503 ~~~i~~~~~~~~~~~~~---~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l~~~~----~g------ 566 (741)
.+...++...+++..-+ |+.++.-++|+|+||+|||++|..+|.... .+++.++..+..... +|
T Consensus 708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l 787 (2050)
T 3cmu_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL 787 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTC
T ss_pred cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccce
Confidence 44567788888888877 488899999999999999999999988763 357777766543332 22
Q ss_pred --hHHHHHHHHHHHHHh----cCCeEEEEcccccccC-CCC--CCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeC
Q psy11254 567 --ESARLIREMFNYARN----HQPCIIFMDEIDAIGG-RRF--SEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 637 (741)
Q Consensus 567 --~s~~~i~~~f~~a~~----~~p~Vl~iDE~d~~~~-~r~--~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn 637 (741)
.++..+..++..++. ..|+++|+|.+..+.. .+. ..++....-..|.+.+++..+..+....++.||++++
T Consensus 788 ~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 112234555555544 6799999999999875 221 1111111122445777777777665556787888776
Q ss_pred CCCCC
Q psy11254 638 RPDTL 642 (741)
Q Consensus 638 ~~~~l 642 (741)
-....
T Consensus 868 v~r~~ 872 (2050)
T 3cmu_A 868 IRMKI 872 (2050)
T ss_dssp CEECT
T ss_pred ccccc
Confidence 44333
No 164
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.33 E-value=1.5e-12 Score=155.07 Aligned_cols=140 Identities=26% Similarity=0.370 Sum_probs=99.7
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHh----------CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~----------~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
.....+++|+||||||||++|+++|..+ +.+++.++. ..+|.|+.+..++.+|..+....|+|||||
T Consensus 198 ~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3556689999999999999999999997 667777766 567888888999999999999889999999
Q ss_pred ccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC-----CCCccccCCCCcceEEEcCCCCHHH
Q psy11254 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQA 665 (741)
Q Consensus 591 E~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~-----~ld~al~rpgR~d~~i~~~~p~~~~ 665 (741)
+ .. ...+.++..|+ .+.+.+|+|||..+ .+|+++.| ||+ .|.|+.|+.++
T Consensus 275 -----~--------~~-----~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~ 329 (758)
T 3pxi_A 275 -----A--------AI-----DASNILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDE 329 (758)
T ss_dssp -----C---------------------CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHH
T ss_pred -----C--------ch-----hHHHHHHHHHh----cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHH
Confidence 0 00 11222333333 45788999999998 79999999 995 59999999999
Q ss_pred HHHHHHHhhcCcccc--CCCCcccc
Q psy11254 666 RLEILKIHAGPIAKH--GEIGDAAT 688 (741)
Q Consensus 666 r~~i~~~~~~~~~~~--~~~~~~a~ 688 (741)
+.+||+.+......+ ..+++.+.
T Consensus 330 ~~~il~~~~~~~~~~~~~~i~~~al 354 (758)
T 3pxi_A 330 SIQILQGLRDRYEAHHRVSITDDAI 354 (758)
T ss_dssp HHHHHHHTTTTSGGGSSCSCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999887754332 34444443
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.33 E-value=2.6e-12 Score=124.73 Aligned_cols=150 Identities=22% Similarity=0.396 Sum_probs=98.9
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceeeec
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKVVS 238 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v~~ 238 (741)
+++++.|.++.++.+.+.+.. ..+.+++|+||||||||++++.++..+.. .+..+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 577899999999998887642 12346899999999999999999998733 1211111
Q ss_pred ccccchhhHHHHHhhhhhhhcccccccccccCCCccchh--hhhcchHHHHHHHHHHHHHhc-CCeEEEecccccccccc
Q psy11254 239 SLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIV--DKYIGESARLIREMFNYARNH-QPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~G~~~~~v~~~~~~A~~~-~P~ILllDEid~l~~~~ 315 (741)
..+. ..+.|.....++..+..+... .|.+|+|||+|.+...+
T Consensus 87 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~ 131 (187)
T 2p65_A 87 -----------------------------------SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAG 131 (187)
T ss_dssp -----------------------------------HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSS
T ss_pred -----------------------------------HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccc
Confidence 0000 123455555666666666554 78899999999997654
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPN 378 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~ 378 (741)
....... .....+..++. ..++.+|++||.++ .+++++.+ ||+. +.++.|+
T Consensus 132 ~~~~~~~--~~~~~l~~~~~-------~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 132 AVAEGAL--DAGNILKPMLA-------RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp SSCTTSC--CTHHHHHHHHH-------TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cccccch--HHHHHHHHHHh-------cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 3211111 12333333332 24678999998765 57889988 9985 8888875
No 166
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.33 E-value=6.5e-13 Score=166.09 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=105.3
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-------------------------hhH
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-------------------------KED 247 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-------------------------~~~ 247 (741)
+++++++|++++| ++|+||+|||||||+++|.+.+.+..|++........ .++
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 5899999999999 8999999999999999999999998887764321110 111
Q ss_pred HHHHh--hhhhhhccccccccccc-----------CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 248 MAILM--GNQLKRRSTHHLEKTYF-----------PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 248 ~~~~~--~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+.+.. .+..+..+..+++..++ ...-.+--..+|||++|++ +++||+..+|.||+|||
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri--aiARAllr~~~ILiLDE------- 1243 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI--AIARALVRNPKILLLDE------- 1243 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH--HHHHHHHSCCSEEEEES-------
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH--HHHHHHHhCCCEEEEeC-------
Confidence 11100 00011112222222221 1111222246899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
||+++|+++.+.+.+.+.++. .+.++|++||++..+.
T Consensus 1244 ---aTSaLD~~tE~~Iq~~l~~~~-----~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1244 ---ATSALDTESEKVVQEALDRAR-----EGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp ---CCCSTTSHHHHHHHHHHTTTS-----SSSEEEEECSSSSTTT
T ss_pred ---ccccCCHHHHHHHHHHHHHHc-----CCCEEEEeccCHHHHH
Confidence 999999999988888886653 3569999999999875
No 167
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.33 E-value=1.3e-11 Score=132.96 Aligned_cols=254 Identities=15% Similarity=0.123 Sum_probs=130.7
Q ss_pred CCCCCCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc
Q psy11254 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV 242 (741)
Q Consensus 163 ~~~~~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~ 242 (741)
...+..+|+++.|.++.++.+......+ ...+++|+||||||||+++++++..++..... ....+.
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~-~~~~~~ 81 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAV-EGCPVS 81 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEE-TTCTTC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccc-cccccc
Confidence 3456678999999999877654433211 12359999999999999999999987631100 000000
Q ss_pred chhhHHHHHhhhhhhhcccccc------cccccCCCccchhhhhcchHHHHHHHHHHHH---------HhcCCeEEEecc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHL------EKTYFPFYSSAIVDKYIGESARLIREMFNYA---------RNHQPCIIFMDE 307 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A---------~~~~P~ILllDE 307 (741)
.... ............. .....+ .......+.|... +...+..+ ...++++|||||
T Consensus 82 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDE 152 (350)
T 1g8p_A 82 SPNV-----EMIPDWATVLSTNVIRKPTPVVDLP--LGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDE 152 (350)
T ss_dssp CSSG-----GGSCTTCCCSCCCEEEECCCEEEEC--TTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETT
T ss_pred cccc-----ccccchhhhhccccccCCCcccccC--CCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeC
Confidence 0000 0000000000000 000000 0000011122100 00011111 112478999999
Q ss_pred ccccccccCCCCCCccHHHHHHHHHHHHh----ccCCCC----CCCeEEEEeeCCCC-CCCccccCCCccceeeecCCC-
Q psy11254 308 IDAIGGRRFSEGTSADREIQRTLMELLNQ----MDGFDS----LGQVKMIMATNRPD-TLDPALLRPGRLDRKIEIPLP- 377 (741)
Q Consensus 308 id~l~~~~~~p~~~lD~~~~~~l~~lL~~----l~~~~~----~~~v~vI~at~~~~-~ld~al~r~gr~d~~i~~~~p- 377 (741)
+|.+. ...+..|..++.. +..... ..++.+|++||..+ .+++++.+ ||+..+.++.|
T Consensus 153 i~~l~-----------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~ 219 (350)
T 1g8p_A 153 CNLLE-----------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPR 219 (350)
T ss_dssp GGGSC-----------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCC
T ss_pred hhhCC-----------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCC
Confidence 98762 3455666676654 111000 12678888898644 78899998 99888999988
Q ss_pred CHHHHHhccccchhcc------------------------CCCcccCCCC---HHHHHHhcC--CC-CHHHHHHHHHHHH
Q psy11254 378 NEQARLAHTWPISIHA------------------------GPIAKHGEID---YEAVVKLSD--SF-NGADLRNVCTEAG 427 (741)
Q Consensus 378 ~~~~r~~i~~~l~~~~------------------------~~~~~~~~~~---~~~la~~t~--g~-~gadi~~l~~~A~ 427 (741)
+.+.+..++....... ........++ ...++.... +. +.+.+.++++.|.
T Consensus 220 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 220 DVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 5656655521100000 0000000122 223333332 22 5688888888887
Q ss_pred HHHHhhhccccchHhHHHHHHHhcc
Q psy11254 428 LFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 428 ~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
..+....+..++.+++..++..+..
T Consensus 300 ~~A~~~~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 300 ALAALEGATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHHTTCSBCCHHHHHHHHHHHHG
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHHh
Confidence 7776666777999999888776543
No 168
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.32 E-value=4.8e-13 Score=167.27 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=108.2
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc-------------------------chh
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV-------------------------TSK 245 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~-------------------------~~~ 245 (741)
...+++++++++++| +.++||+|||||||+++|.|.+.+..|++...... +..
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 346899999999999 88999999999999999999999998888643210 011
Q ss_pred hHHHHHhhhhhhhccccccccccc-------CC----CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccc
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYF-------PF----YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR 314 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~----~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~ 314 (741)
+++.+...+..++++..+++..++ +. .-.+--..+|||++||+ ++++|+..+|+||+|||
T Consensus 510 eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi--aiARAl~~~~~IliLDE------- 580 (1321)
T 4f4c_A 510 ENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI--AIARALVRNPKILLLDE------- 580 (1321)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH--HHHHHHTTCCSEEEEES-------
T ss_pred HHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH--HHHHHHccCCCEEEEec-------
Confidence 222211111112222222222221 11 11222346899999999 99999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCc
Q psy11254 315 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDP 360 (741)
Q Consensus 315 ~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~ 360 (741)
|++++|.++.+.+.+.+..+.. +.++|++||++..+..
T Consensus 581 ---~tSaLD~~te~~i~~~l~~~~~-----~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 581 ---ATSALDAESEGIVQQALDKAAK-----GRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp ---TTTTSCTTTHHHHHHHHHHHHT-----TSEEEEECSCTTTTTT
T ss_pred ---ccccCCHHHHHHHHHHHHHHhC-----CCEEEEEcccHHHHHh
Confidence 9999999988888888877643 4589999999998753
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.32 E-value=2e-11 Score=130.35 Aligned_cols=198 Identities=15% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc---CCCceeeecc
Q psy11254 166 GDITYSAIG-G--LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSS 239 (741)
Q Consensus 166 ~~~~~~~i~-G--l~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l---~~~~~~v~~~ 239 (741)
+..+|+++. | -......++..+..+. ..+.+++|+||||||||||++++++.+ +..+..++..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345666664 3 3444455555544321 123569999999999999999999988 5555555431
Q ss_pred cccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCC
Q psy11254 240 LFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~ 319 (741)
.+ ...+.+.........|.... .+|++|||||++.+..
T Consensus 75 ~~-----------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~------ 112 (324)
T 1l8q_A 75 DF-----------------------------------AQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG------ 112 (324)
T ss_dssp HH-----------------------------------HHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT------
T ss_pred HH-----------------------------------HHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC------
Confidence 11 11111111111111222222 3588999999998743
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC---CCCccccCCCccc--eeeecCCCCHHHHHhccccchhccC
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD---TLDPALLRPGRLD--RKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~---~ld~al~r~gr~d--~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
+...+..+..+++.+.. .+...|+.+++.+. .+++.+.+ ||+ ..+.+++ +.+++..++...... .
T Consensus 113 ---~~~~~~~l~~~l~~~~~---~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~-~ 182 (324)
T 1l8q_A 113 ---KERTQIEFFHIFNTLYL---LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKE-F 182 (324)
T ss_dssp ---CHHHHHHHHHHHHHHHH---TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHH-T
T ss_pred ---ChHHHHHHHHHHHHHHH---CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHh-c
Confidence 22345666666665432 23344444444544 57788877 775 6788988 999998873222111 1
Q ss_pred CCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy11254 395 PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLF 429 (741)
Q Consensus 395 ~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~ 429 (741)
..... +.....++..+ -+.+++.+++..+...
T Consensus 183 ~~~l~-~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 183 NLELR-KEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp TCCCC-HHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 11111 11245666776 4667777777665443
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=3.1e-11 Score=120.26 Aligned_cols=200 Identities=23% Similarity=0.266 Sum_probs=120.3
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF 241 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~ 241 (741)
...++++.|.++.++.+.+.+... ...+++|+||+|||||++++.++..+... +..+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~-- 77 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-- 77 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc--
Confidence 356888999999999999887631 12248999999999999999999876322 2222110
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH------hcCCeEEEecccccccccc
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR------NHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~------~~~P~ILllDEid~l~~~~ 315 (741)
...+ ...++..+.... ...+.+|+|||+|.+.
T Consensus 78 -------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--- 115 (226)
T 2chg_A 78 -------------------------------------DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--- 115 (226)
T ss_dssp -------------------------------------CTTC--HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC---
T ss_pred -------------------------------------cccC--hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC---
Confidence 0000 011111121111 2578999999998763
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCC
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGP 395 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~ 395 (741)
......+..++... ..++.+|++||.++.+++.+.+ |+. .+.+++|+..+...++.......+
T Consensus 116 --------~~~~~~l~~~l~~~-----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~- 178 (226)
T 2chg_A 116 --------ADAQAALRRTMEMY-----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG- 178 (226)
T ss_dssp --------HHHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT-
T ss_pred --------HHHHHHHHHHHHhc-----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcC-
Confidence 23455666666553 2467899999999888888887 676 789999998887666221111111
Q ss_pred CcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHH
Q psy11254 396 IAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447 (741)
Q Consensus 396 ~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 447 (741)
... .......++..+.| +.+.+.+.+..+...+ ..++.+++..++
T Consensus 179 ~~~-~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~ 223 (226)
T 2chg_A 179 VKI-TEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQIT 223 (226)
T ss_dssp CCB-CHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHh
Confidence 110 11123455555554 3344445554443322 467777766654
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.30 E-value=2.6e-12 Score=130.23 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=114.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 599 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r 599 (741)
.+.+++|+||||||||+++++++..+. .+++.++.+++...+.. .+.. ...+.+|||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCC-
Confidence 457799999999999999999998875 56777888776554321 1111 134689999999987422
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeC-CCC---CCCccccCCCCcc--eEEEcCCCCHHHHHHHHHHh
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN-RPD---TLDPALLRPGRLD--RKIEIPLPNEQARLEILKIH 673 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn-~~~---~ld~al~rpgR~d--~~i~~~~p~~~~r~~i~~~~ 673 (741)
......+..+++... ..+.+.+|++|| .+. .+++++.+ ||+ .+++|++|+.+++.++++.+
T Consensus 120 --------~~~~~~l~~~l~~~~---~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 120 --------PLWEEAIFDLYNRVA---EQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp --------HHHHHHHHHHHHHHH---HHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHH---HcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHH
Confidence 112344445544432 112332555555 343 45678877 786 99999999999999999998
Q ss_pred hcCccccCCCCcccccccccccc-cchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 674 AGPIAKHGEIGDAATKWVLPFTA-GGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 674 ~~~~~~~~~~~~~a~~~l~~~~s-~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
+... +..+++.....+..... +.+...+.+..+-.........++.+++..++
T Consensus 187 ~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l 240 (242)
T 3bos_A 187 AAMR--GLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEML 240 (242)
T ss_dssp HHHT--TCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHh
Confidence 7632 23456666555544332 22333344333333333334568888887765
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=2e-11 Score=132.75 Aligned_cols=197 Identities=25% Similarity=0.290 Sum_probs=124.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh------CccEEEEechhhhc------c----------ccch-HHHHHHHHHHHH
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSSAIVD------K----------YIGE-SARLIREMFNYA 579 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~------~~~~~~v~~~~l~~------~----------~~g~-s~~~i~~~f~~a 579 (741)
.+..++|+||||||||++++.+++.+ +.+++.+++..... . ..|. .......+++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999988 77788887653211 1 1121 223345555555
Q ss_pred HhcC-CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC---CCCCccccCCCCcc-e
Q psy11254 580 RNHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLRPGRLD-R 654 (741)
Q Consensus 580 ~~~~-p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~---~~ld~al~rpgR~d-~ 654 (741)
.... |+||+|||++.+...+. . ..+..++..++.. ...++.+|++||.+ +.+++.+.+ ||. .
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~-------~---~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~ 190 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYN-------D---DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEE 190 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSC-------S---THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTE
T ss_pred hccCCeEEEEEcChhhhhccCc-------C---HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCe
Confidence 4443 89999999999864320 1 2345555555433 33478899999987 467788877 675 5
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCccccCCCCccccccccccccc--chHH--HHHHHhhhhhhh-cCCCcccHHHHHHHHH
Q psy11254 655 KIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAG--GFIY--IATVSVIPELLE-DTSPKQTVKEILALLL 729 (741)
Q Consensus 655 ~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~--gf~~--~a~~~~~~~l~~-~~~~~~s~~~i~~~l~ 729 (741)
.++|++|+.++..+|++.++........+++.....+...... |... ......+-.++. +.....+.+++..++.
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 9999999999999999987653221234555555544443321 3332 233333333333 2445788888887765
Q ss_pred HHH
Q psy11254 730 GVF 732 (741)
Q Consensus 730 g~~ 732 (741)
.+.
T Consensus 271 ~~~ 273 (386)
T 2qby_A 271 EIE 273 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.5e-11 Score=130.90 Aligned_cols=239 Identities=20% Similarity=0.202 Sum_probs=131.6
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc------CCCceeeeccccc
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSSLFV 242 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l------~~~~~~v~~~~~~ 242 (741)
..+++.|.++.++.+.+.+..... -..+..++|+||||||||||++.+++.+ +..+..+.+....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347799999999999887753211 1234468999999999999999999988 4444444321111
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHH-HHHHHHHHHhc-CCeEEEeccccccccccCCCCC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL-IREMFNYARNH-QPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~-v~~~~~~A~~~-~P~ILllDEid~l~~~~~~p~~ 320 (741)
....-+. ..+..++.... ..|..... ...++..+... .|.||+|||++.+.....
T Consensus 89 ~~~~~~~------------~i~~~l~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 89 TPYRVLA------------DLLESLDVKVP-------FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp SHHHHHH------------HHTTTTSCCCC-------SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----
T ss_pred CHHHHHH------------HHHHHhCCCCC-------CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----
Confidence 1000000 01111111100 01111112 22223332223 399999999999864321
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC---CCCccccCCCccc-eeeecCCCCHHHHHhccccchh-ccCC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD---TLDPALLRPGRLD-RKIEIPLPNEQARLAHTWPISI-HAGP 395 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~---~ld~al~r~gr~d-~~i~~~~p~~~~r~~i~~~l~~-~~~~ 395 (741)
. ..+..++..++.. ...++.+|++||+++ .+++.+.+ |+. +.+.+++++..+..+++..... ....
T Consensus 146 ---~---~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~ 216 (386)
T 2qby_A 146 ---D---DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKP 216 (386)
T ss_dssp ---S---THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCS
T ss_pred ---C---HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccC
Confidence 1 2333444444322 235789999999884 45666655 553 5899999999888776322111 1111
Q ss_pred CcccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 396 IAKHGEIDYEAVVKLSD---SFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 396 ~~~~~~~~~~~la~~t~---g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
... .+.....++..+. | +...+.++|..+...+.......++.+++..++...
T Consensus 217 ~~~-~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVL-PDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCS-CHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 111 1111344555554 4 345566688887776665555678888887776554
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.29 E-value=9e-12 Score=132.95 Aligned_cols=146 Identities=24% Similarity=0.334 Sum_probs=103.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHH-HHhc----CCeEEEEcccccccCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNY-ARNH----QPCIIFMDEIDAIGGR 598 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~-a~~~----~p~Vl~iDE~d~~~~~ 598 (741)
+..++++||||||||++++++++.++.+++.+++++.- ...++..+.. +... .++|+||||+|.+.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~- 119 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL- 119 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-
Confidence 34578889999999999999999999999999987631 2334444433 3221 568999999998731
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
......+..+++... .++.+|+|||.+..+++++.+ |+. ++.|++|+.++|.+|++..+..+.
T Consensus 120 ---------~~~~~~L~~~le~~~-----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 120 ---------AESQRHLRSFMEAYS-----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp ---------HHHHHHHHHHHHHHG-----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCC-----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 233455666665532 357799999999999999998 885 799999999999888776544321
Q ss_pred -----ccCCCCc-ccccccccc
Q psy11254 679 -----KHGEIGD-AATKWVLPF 694 (741)
Q Consensus 679 -----~~~~~~~-~a~~~l~~~ 694 (741)
.+..+++ .+...+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~ 204 (324)
T 3u61_B 183 EICKHEGIAIADMKVVAALVKK 204 (324)
T ss_dssp HHHHHHTCCBSCHHHHHHHHHH
T ss_pred HHHHHcCCCCCcHHHHHHHHHh
Confidence 1234555 555544433
No 175
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.29 E-value=1.4e-11 Score=132.79 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=114.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEE----Eechh---------------------hhccccchHHHH------HH
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLK----VVSSA---------------------IVDKYIGESARL------IR 573 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~----v~~~~---------------------l~~~~~g~s~~~------i~ 573 (741)
.+++|+||||||||++|++++..++..... +++.. ++....+.+... +.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 459999999999999999999988631100 00000 000001111111 11
Q ss_pred HHHHHHH---------hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHc----cCCCC----CCCeEEEEee
Q psy11254 574 EMFNYAR---------NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM----DGFDS----LGQVKMIMAT 636 (741)
Q Consensus 574 ~~f~~a~---------~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~----~g~~~----~~~v~vi~tT 636 (741)
..+..+. ...++||||||++.+. ......+..+++.- ..... ..++++|+||
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~ 194 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLE-----------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSG 194 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCC-----------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEe
Confidence 1222221 1136899999999852 23455666666641 11110 1268899999
Q ss_pred CCCC-CCCccccCCCCcceEEEcCCC-CHHHHHHHHHHhhcC---------------------------ccccCCCCccc
Q psy11254 637 NRPD-TLDPALLRPGRLDRKIEIPLP-NEQARLEILKIHAGP---------------------------IAKHGEIGDAA 687 (741)
Q Consensus 637 n~~~-~ld~al~rpgR~d~~i~~~~p-~~~~r~~i~~~~~~~---------------------------~~~~~~~~~~a 687 (741)
|..+ .+++++++ ||+.++++++| +.+.+.+|++..+.. ......+++.+
T Consensus 195 n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~ 272 (350)
T 1g8p_A 195 NPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA 272 (350)
T ss_dssp CSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH
T ss_pred CCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH
Confidence 9744 89999999 99999999999 677888998763210 01112455555
Q ss_pred ccccccccc-----cchHHHHHHHhhhhhhhc-CCCcccHHHHHHHHHHH
Q psy11254 688 TKWVLPFTA-----GGFIYIATVSVIPELLED-TSPKQTVKEILALLLGV 731 (741)
Q Consensus 688 ~~~l~~~~s-----~gf~~~a~~~~~~~l~~~-~~~~~s~~~i~~~l~g~ 731 (741)
..++..... +.+...++...+..++.. .+...+.+++..++.=+
T Consensus 273 ~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 273 LYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 555443322 235566666666655543 34568888888765443
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=2.4e-11 Score=122.65 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=113.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCcc------------------------EEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDAN------------------------FLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~------------------------~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
..++|+||||+|||++++.+++.+... ++.+.... ......++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 119 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQ 119 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhh
Confidence 468999999999999999999887432 12222111 122344566666543
Q ss_pred ----hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEE
Q psy11254 581 ----NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKI 656 (741)
Q Consensus 581 ----~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i 656 (741)
...|.+|||||++.+. ... +..++..++. ...++.+|++||.+..+++++.+ |+ ..+
T Consensus 120 ~~~~~~~~~vlviDe~~~l~-----------~~~---~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i 180 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLS-----------RHS---FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQF 180 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSC-----------HHH---HHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred hchhcCCceEEEEECccccc-----------HHH---HHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhc
Confidence 2347899999999852 222 3334444442 23478899999999999999987 75 789
Q ss_pred EcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 657 EIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 657 ~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
++++|+.++..++++.++... +..+++.....+.... +|. ...+...+..++.......+.+++..++
T Consensus 181 ~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~-~G~-~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 181 HLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLARAA-EGS-LRDALSLTDQAIASGDGQVSTQAVSAML 248 (250)
T ss_dssp ECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHHH-TTC-HHHHHHHHHHHHTTTTSSBCHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHc-CCC-HHHHHHHHHHHHhccCceecHHHHHHHh
Confidence 999999999999999887532 2244554444444433 332 3333344444444444578888877653
No 177
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.28 E-value=2.3e-12 Score=142.51 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=57.8
Q ss_pred hhhhh-cchHHHHHHHHHHHHHhcCC--eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEee
Q psy11254 276 IVDKY-IGESARLIREMFNYARNHQP--CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT 352 (741)
Q Consensus 276 ~~~~~-~G~~~~~v~~~~~~A~~~~P--~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at 352 (741)
.+..+ |||+.+++ ++++++..+| .||+||| |++++|+....++.++|..+.. +.+||++|
T Consensus 291 ~~~~~lSgGe~qrl--~lA~~l~~~~~~~~LlLDE----------pt~~LD~~~~~~l~~~L~~l~~-----~~~vi~it 353 (415)
T 4aby_A 291 PLSDVASGGELSRV--MLAVSTVLGADTPSVVFDE----------VDAGIGGAAAIAVAEQLSRLAD-----TRQVLVVT 353 (415)
T ss_dssp BGGGCSCHHHHHHH--HHHHHHHHCCSSSEEEESS----------TTTTCCHHHHHHHHHHHHHHTT-----TSEEEEEC
T ss_pred chhhhcCHhHHHHH--HHHHHHHhCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHhC-----CCEEEEEe
Confidence 34444 99999999 9999999999 9999999 9999999999999999998852 46899999
Q ss_pred CCCCCCC
Q psy11254 353 NRPDTLD 359 (741)
Q Consensus 353 ~~~~~ld 359 (741)
|+++.++
T Consensus 354 H~~~~~~ 360 (415)
T 4aby_A 354 HLAQIAA 360 (415)
T ss_dssp SCHHHHT
T ss_pred CcHHHHh
Confidence 9986553
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=4.8e-11 Score=120.43 Aligned_cols=222 Identities=15% Similarity=0.186 Sum_probs=128.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
..++++.|.++.++.+.+.+... ..+..++|+||||+||||+++.++..+............. ...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDN 85 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC--SHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc--cHH
Confidence 45788999999999999887531 1234588999999999999999999876543211110000 001
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH----hcCCeEEEeccccccccccCCCCCCcc
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR----NHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~----~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+..+.... ......+.. . .......++..+..+. ...|.+|+|||+|.+ +
T Consensus 86 ~~~~~~~~-------~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~ 139 (250)
T 1njg_A 86 CREIEQGR-------FVDLIEIDA------A--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------S 139 (250)
T ss_dssp HHHHHTTC-------CSSEEEEET------T--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------C
T ss_pred HHHHhccC-------CcceEEecC------c--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------c
Confidence 11110000 000000000 0 0011223334444332 345889999998875 3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC--CCcccCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG--PIAKHGE 401 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~--~~~~~~~ 401 (741)
......+..++... ..++.+|++||++..+++.+.+ |+ ..+.+++++..+..++ +..+.. .... ..
T Consensus 140 ~~~~~~l~~~l~~~-----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~---l~~~~~~~~~~~-~~ 207 (250)
T 1njg_A 140 RHSFNALLKTLEEP-----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQ---LEHILNEEHIAH-EP 207 (250)
T ss_dssp HHHHHHHHHHHHSC-----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH---HHHHHHHTTCCB-CH
T ss_pred HHHHHHHHHHHhcC-----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHH---HHHHHHhcCCCC-CH
Confidence 34445555554332 3578899999998888887776 43 5788999998887766 322211 1111 11
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHH
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA 446 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a 446 (741)
.....+++.+.| +.+.+.+++..+...+ ...++.+++.++
T Consensus 208 ~~~~~l~~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~ 247 (250)
T 1njg_A 208 RALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 247 (250)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHH
Confidence 124567788877 6677888887764322 235777776654
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=6e-11 Score=129.42 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=133.8
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCC--CceEEcCCCChHHHHHHHHHHhcCCC----ceeeecccccc
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPK--GCLLYGPPGTGKTLLARAVASQLDAN----FLKVVSSLFVT 243 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~--GvlL~Gp~GtGKTtL~r~ia~~l~~~----~~~v~~~~~~~ 243 (741)
.+++.|-++.++++.+.+.... .+ ..+. .++|+|||||||||+++++++.+... +..+.......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~------~~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWL------RN---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHH------HS---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHH------cC---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 3679999999999998875321 11 1223 68899999999999999999998543 33333221111
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH--hcCCeEEEeccccccccccCCCCCC
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR--NHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~--~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
...-+..+.. .++.... ..|.....+...+...+ ...|.||+|||+|.+
T Consensus 87 ~~~~~~~l~~------------~l~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------- 137 (389)
T 1fnn_A 87 FTAIIGEIAR------------SLNIPFP-------RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------- 137 (389)
T ss_dssp HHHHHHHHHH------------HTTCCCC-------SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS----------
T ss_pred HHHHHHHHHH------------HhCccCC-------CCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc----------
Confidence 1111111100 0010000 00111111111222221 245889999998876
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCC---CCCCccccCCCccce-eeecCCCCHHHHHhccccchhccCCCc
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLRPGRLDR-KIEIPLPNEQARLAHTWPISIHAGPIA 397 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~---~~ld~al~r~gr~d~-~i~~~~p~~~~r~~i~~~l~~~~~~~~ 397 (741)
+......|..++..+.. ....++.+|++||++ +.+++.+.+ |+.. .+.+++++..+...++...........
T Consensus 138 -~~~~~~~L~~~~~~~~~-~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~ 213 (389)
T 1fnn_A 138 -APDILSTFIRLGQEADK-LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG 213 (389)
T ss_dssp -CHHHHHHHHHHTTCHHH-HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT
T ss_pred -chHHHHHHHHHHHhCCC-CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC
Confidence 34445555555433321 001478999999988 556666655 6653 799999998877666221111100000
Q ss_pred ccCCCCHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 398 KHGEIDYEAVVKLSD--------SFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 398 ~~~~~~~~~la~~t~--------g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
...+.....++..+. +-+.+.+.++++.|...+.......++.+++..+....
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 111122455667773 22456677888888777766666678888877776543
No 180
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=6.1e-11 Score=129.26 Aligned_cols=228 Identities=21% Similarity=0.218 Sum_probs=129.6
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc-----------CCCceeeecc
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-----------DANFLKVVSS 239 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l-----------~~~~~~v~~~ 239 (741)
+++.|.++.++++.+.+..... -..+.+++|+|||||||||+++.++..+ +..+..+...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6789999999999987753211 1334569999999999999999999987 4445444432
Q ss_pred ccc-chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchH-HHHHHHHHHHHHhcCCeEEEeccccccccccCC
Q psy11254 240 LFV-TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES-ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFS 317 (741)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~-~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~ 317 (741)
... ....-+..+... + .+.. ....|.. ...+..++. .....+.||+|||+|.+....
T Consensus 91 ~~~~~~~~~~~~l~~~-l----------~~~~-------~~~~~~~~~~~~~~l~~-~l~~~~~vlilDEi~~l~~~~-- 149 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGK-L----------TGFS-------VPKHGINLGEYIDKIKN-GTRNIRAIIYLDEVDTLVKRR-- 149 (384)
T ss_dssp HHCSCHHHHHHHHHHH-H----------HCSC-------CCSSSSCTHHHHHHHHH-HHSSSCEEEEEETTHHHHHST--
T ss_pred cCCCCHHHHHHHHHHH-h----------cCCC-------CCCCCCCHHHHHHHHHH-HhccCCCEEEEECHHHhccCC--
Confidence 111 111000000000 0 0000 0011111 222222333 333344499999999986431
Q ss_pred CCCCccHHHHHH-HHHHHHhccCCCCCCCeEEEEeeCCC---CCCCccccCCCccceeeecCCCCHHHHHhccccchhcc
Q psy11254 318 EGTSADREIQRT-LMELLNQMDGFDSLGQVKMIMATNRP---DTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHA 393 (741)
Q Consensus 318 p~~~lD~~~~~~-l~~lL~~l~~~~~~~~v~vI~at~~~---~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~ 393 (741)
. ... +..++... .++.+|++||++ +.+++.+.+ ||...+.+++++.++...+ +..+.
T Consensus 150 ---~-----~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~i---l~~~~ 210 (384)
T 2qby_B 150 ---G-----GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFI---LSKYA 210 (384)
T ss_dssp ---T-----SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHH---HHHHH
T ss_pred ---C-----CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHH---HHHHH
Confidence 0 122 33333222 578999999988 567777776 7766999999999888777 33321
Q ss_pred C----CCcccCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 394 G----PIAKHGEIDYEAVVKLSDSF--NGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 394 ~----~~~~~~~~~~~~la~~t~g~--~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
. .... .+.....+++.+..+ +.+.+.++++.|...+. ....++.+++..++...
T Consensus 211 ~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 211 EYGLIKGTY-DDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HhhcccCCc-CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 1 1111 111245566666522 23455567777765554 34567777777766553
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.26 E-value=1.7e-11 Score=136.19 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=126.8
Q ss_pred CCcccccChHHHH---HHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch
Q psy11254 168 ITYSAIGGLSEQI---RELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS 244 (741)
Q Consensus 168 ~~~~~i~Gl~~~k---~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~ 244 (741)
-+++++.|.+.++ +.+...+... . ..+++|+|||||||||++++|++.++..+..++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~------------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG------------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT------------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC------------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 4688999999998 6777766531 1 146899999999999999999999998887776410
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH----hcCCeEEEeccccccccccCCCCC
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR----NHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~----~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.....++..+..+. ..++.||||||+|.+...
T Consensus 86 --------------------------------------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------ 121 (447)
T 3pvs_A 86 --------------------------------------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------ 121 (447)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------
T ss_pred --------------------------------------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------
Confidence 01112233333333 357899999999987421
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC--CCCCCCccccCCCccceeeecCCCCHHHHHhccccchhc-cCCCc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATN--RPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIH-AGPIA 397 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~--~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~-~~~~~ 397 (741)
.+..|...+ +. +.+.+|++|+ ....+++++.+ |+. .+.++.|+.++...++...... ...+.
T Consensus 122 -----~q~~LL~~l---e~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 122 -----QQDAFLPHI---ED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp --------CCHHHH---HT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred -----HHHHHHHHH---hc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 223334443 32 4577888773 33468888888 664 6778889988877662222111 11110
Q ss_pred -ccCCCC---HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh--hccccchHhHHHHHHH
Q psy11254 398 -KHGEID---YEAVVKLSDSFNGADLRNVCTEAGLFAIRS--EREYVTQEDFMKAVRK 449 (741)
Q Consensus 398 -~~~~~~---~~~la~~t~g~~gadi~~l~~~A~~~a~~~--~~~~i~~~d~~~a~~~ 449 (741)
....++ ...++..+.| +.+.+.++++.+...+... ....++.+++..++..
T Consensus 187 ~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 011122 4556666554 5577778887776655322 3356888888777654
No 182
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.26 E-value=7.2e-12 Score=140.53 Aligned_cols=138 Identities=18% Similarity=0.253 Sum_probs=86.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCc--cEEEEe-----chhhhccccchHHHHHHHHHHHH-Hhc--CCeEEEEcccc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDA--NFLKVV-----SSAIVDKYIGESARLIREMFNYA-RNH--QPCIIFMDEID 593 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~--~~~~v~-----~~~l~~~~~g~s~~~i~~~f~~a-~~~--~p~Vl~iDE~d 593 (741)
+.+++|+||||||||++|+++|..++. +|..+. ++++++.+.+...... ..|..+ .+. .++||||||++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~-g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE-GRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc-hhHHhhhccCCCcceeeeHHhHh
Confidence 357999999999999999999998854 333332 2455554444332222 223222 221 47899999997
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHcc----CC-CCCCCeEEEEeeCCCCC---CCccccCCCCcceEEEcCCCCH-H
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQMD----GF-DSLGQVKMIMATNRPDT---LDPALLRPGRLDRKIEIPLPNE-Q 664 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~~----g~-~~~~~v~vi~tTn~~~~---ld~al~rpgR~d~~i~~~~p~~-~ 664 (741)
.+ .+.....+.+++++-. |. ...+..++|+|||.+.. +.+++++ ||...+++|+|+. +
T Consensus 120 r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~e 186 (500)
T 3nbx_X 120 KA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKA 186 (500)
T ss_dssp GC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHH
T ss_pred hh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhh
Confidence 63 3344555555554321 11 11223357888886432 3458888 9999999999997 7
Q ss_pred HHHHHHHHhhc
Q psy11254 665 ARLEILKIHAG 675 (741)
Q Consensus 665 ~r~~i~~~~~~ 675 (741)
++..|++.+..
T Consensus 187 e~~~IL~~~~~ 197 (500)
T 3nbx_X 187 NFRSMLTSQQD 197 (500)
T ss_dssp HHHHHHTCCCC
T ss_pred hHHHHHhcccc
Confidence 88999987654
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=1.7e-11 Score=139.38 Aligned_cols=183 Identities=21% Similarity=0.270 Sum_probs=109.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHH-------HHHHHHHH-----HhcCCeEEEEc
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARL-------IREMFNYA-----RNHQPCIIFMD 590 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~-------i~~~f~~a-----~~~~p~Vl~iD 590 (741)
++..++|+||||||||++|+++|++++.+++.++++++...+..+.... +..+|..+ ....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 4578999999999999999999999999999999887655432221100 12233332 22467999999
Q ss_pred ccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC--CCCccccCCCCcceEEEcCCCCHHHHHH
Q psy11254 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD--TLDPALLRPGRLDRKIEIPLPNEQARLE 668 (741)
Q Consensus 591 E~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~--~ld~al~rpgR~d~~i~~~~p~~~~r~~ 668 (741)
|+|.+.... ......+..++..- ++.+|++||... .+ +.+. |+...+.|++|+.+++.+
T Consensus 156 Eid~l~~~~--------~~~l~~L~~~l~~~-------~~~iIli~~~~~~~~l-~~l~---~r~~~i~f~~~~~~~~~~ 216 (516)
T 1sxj_A 156 EVDGMSGGD--------RGGVGQLAQFCRKT-------STPLILICNERNLPKM-RPFD---RVCLDIQFRRPDANSIKS 216 (516)
T ss_dssp SGGGCCTTS--------TTHHHHHHHHHHHC-------SSCEEEEESCTTSSTT-GGGT---TTSEEEECCCCCHHHHHH
T ss_pred CCCccchhh--------HHHHHHHHHHHHhc-------CCCEEEEEcCCCCccc-hhhH---hceEEEEeCCCCHHHHHH
Confidence 999986432 11234555555542 222555555443 33 3343 566799999999999999
Q ss_pred HHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHH
Q psy11254 669 ILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLL 729 (741)
Q Consensus 669 i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~ 729 (741)
+++..+... +..+++.+...+.... +|....+ ...+..+.. .....+.+++..++.
T Consensus 217 ~L~~i~~~~--~~~i~~~~l~~la~~s-~GdiR~~-i~~L~~~~~-~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 217 RLMTIAIRE--KFKLDPNVIDRLIQTT-RGDIRQV-INLLSTIST-TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHH--TCCCCTTHHHHHHHHT-TTCHHHH-HHHHTHHHH-HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHHc-CCcHHHH-HHHHHHHHh-cCCCCchHHHHHHHH
Confidence 998766432 2235555555554443 3333222 222222222 233455566555443
No 184
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.23 E-value=3.6e-11 Score=127.23 Aligned_cols=215 Identities=19% Similarity=0.262 Sum_probs=120.4
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhC-CCCCC-CceEEcCCCChHHHHHHHHHHhcCCC---ceeeecccccchh
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVG-ITPPK-GCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSSLFVTSK 245 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~-l~~~~-GvlL~Gp~GtGKTtL~r~ia~~l~~~---~~~v~~~~~~~~~ 245 (741)
.++.|.+.+++.+...+.... ..+. -..+. .++|+||||||||+++++|++.+... +..+........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~- 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK- 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST-
T ss_pred hhcCCHHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc-
Confidence 457899999999988876421 1000 01123 38999999999999999999988543 433333211110
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh-cCCeEEEeccccccccccCCCCCCccH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN-HQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~-~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
.....+.+.. ..+.|..... .+..+.. ...++|||||+|.+ ++
T Consensus 90 ~~~~~l~g~~----------------------~~~~~~~~~~---~~~~~~~~~~~~vl~lDEi~~l-----------~~ 133 (311)
T 4fcw_A 90 HAVSRLIGAP----------------------PGYVGYEEGG---QLTEAVRRRPYSVILFDAIEKA-----------HP 133 (311)
T ss_dssp THHHHHHCCC----------------------TTSTTTTTCC---HHHHHHHHCSSEEEEEETGGGS-----------CH
T ss_pred ccHHHhcCCC----------------------Cccccccccc---hHHHHHHhCCCeEEEEeChhhc-----------CH
Confidence 0011111100 1122211100 2222333 34589999999875 34
Q ss_pred HHHHHHHHHHHhccCCC------CCCCeEEEEeeCC--------------------------CCCCCccccCCCccceee
Q psy11254 325 EIQRTLMELLNQMDGFD------SLGQVKMIMATNR--------------------------PDTLDPALLRPGRLDRKI 372 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~------~~~~v~vI~at~~--------------------------~~~ld~al~r~gr~d~~i 372 (741)
..+..|.+++..-.-.. ...++.+|++||. ...+++.+.. ||+..+
T Consensus 134 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~ 211 (311)
T 4fcw_A 134 DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIV 211 (311)
T ss_dssp HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEE
T ss_pred HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEE
Confidence 56777777776532100 0136679999998 3356677775 999999
Q ss_pred ecCCCCHHHHHhccccch-hccCCC---cccCCCC---HHHHHHhcC--CCCHHHHHHHHHHHHHHH
Q psy11254 373 EIPLPNEQARLAHTWPIS-IHAGPI---AKHGEID---YEAVVKLSD--SFNGADLRNVCTEAGLFA 430 (741)
Q Consensus 373 ~~~~p~~~~r~~i~~~l~-~~~~~~---~~~~~~~---~~~la~~t~--g~~gadi~~l~~~A~~~a 430 (741)
.+++|+.++...++..+. .....+ .....++ ...++.... .++.+++.++++.+...+
T Consensus 212 ~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 212 VFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp ECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 999999888776622211 110000 0011122 334444443 567788888887765543
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.23 E-value=1.4e-10 Score=117.28 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=118.5
Q ss_pred CCCcccccC---hHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCc---eeeeccc
Q psy11254 167 DITYSAIGG---LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANF---LKVVSSL 240 (741)
Q Consensus 167 ~~~~~~i~G---l~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~---~~v~~~~ 240 (741)
..+++++.| ....++.+...+..+ .+.+++|+|||||||||++++++..+.... ..+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~- 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGD-------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG- 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTC-------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-
Confidence 356677765 346666666655421 235689999999999999999999876432 222210
Q ss_pred ccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCC
Q psy11254 241 FVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
.+...+. . .+. ...+|++|+|||+|.+..
T Consensus 90 ----------------------------------~~~~~~~----~----~~~--~~~~~~vliiDe~~~~~~------- 118 (242)
T 3bos_A 90 ----------------------------------IHASIST----A----LLE--GLEQFDLICIDDVDAVAG------- 118 (242)
T ss_dssp ----------------------------------GGGGSCG----G----GGT--TGGGSSEEEEETGGGGTT-------
T ss_pred ----------------------------------HHHHHHH----H----HHH--hccCCCEEEEeccccccC-------
Confidence 0000000 0 000 124678999999988742
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC----CCCccccCCCccc--eeeecCCCCHHHHHhccccchhccC
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD----TLDPALLRPGRLD--RKIEIPLPNEQARLAHTWPISIHAG 394 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~----~ld~al~r~gr~d--~~i~~~~p~~~~r~~i~~~l~~~~~ 394 (741)
+......+..+++.... .+.+.+|++||... .+++.+.+ |+. ..+.++.|+.+++.+++.......
T Consensus 119 --~~~~~~~l~~~l~~~~~---~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~- 190 (242)
T 3bos_A 119 --HPLWEEAIFDLYNRVAE---QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMR- 190 (242)
T ss_dssp --CHHHHHHHHHHHHHHHH---HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHT-
T ss_pred --CHHHHHHHHHHHHHHHH---cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHc-
Confidence 12234556666655432 23334666666433 34456665 664 789999999999887732221111
Q ss_pred CCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHH
Q psy11254 395 PIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447 (741)
Q Consensus 395 ~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 447 (741)
.... .+.....++..+.| +.+++.+++..+...+... ...++.+++..++
T Consensus 191 ~~~~-~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~-~~~It~~~v~~~l 240 (242)
T 3bos_A 191 GLQL-PEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH-QRKLTIPFVKEML 240 (242)
T ss_dssp TCCC-CHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHh
Confidence 1111 11123456666654 6788888888877666433 3458877776654
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=5.6e-11 Score=129.69 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=118.0
Q ss_pred ceEEEcCCCCChHHHHHHHHHHh----CccEEEEechhhhc------c----------ccch-HHHHHHHHHHHHHh-cC
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQL----DANFLKVVSSAIVD------K----------YIGE-SARLIREMFNYARN-HQ 583 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~----~~~~~~v~~~~l~~------~----------~~g~-s~~~i~~~f~~a~~-~~ 583 (741)
.++|+||||||||++++++++.+ +..++.+++..... . ..+. .......+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999998 45677777543221 0 0111 12222333333322 35
Q ss_pred CeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC--CCCeEEEEeeCCC---CCCCccccCCCCcce-EEE
Q psy11254 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS--LGQVKMIMATNRP---DTLDPALLRPGRLDR-KIE 657 (741)
Q Consensus 584 p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~--~~~v~vi~tTn~~---~~ld~al~rpgR~d~-~i~ 657 (741)
|.||||||++.+ +.. .+..++..++.... ..++.+|++||.+ +.+++.+.+ ||.. .++
T Consensus 126 ~~vlilDE~~~l-----------~~~---~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~ 189 (389)
T 1fnn_A 126 YMFLVLDDAFNL-----------APD---ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIR 189 (389)
T ss_dssp CEEEEEETGGGS-----------CHH---HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEE
T ss_pred eEEEEEECcccc-----------chH---HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEE
Confidence 899999999986 222 34444444443221 1378899999988 678888877 8875 899
Q ss_pred cCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccc--------cch--HHHHHHHhhhhhhhc-CCCcccHHHHHH
Q psy11254 658 IPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTA--------GGF--IYIATVSVIPELLED-TSPKQTVKEILA 726 (741)
Q Consensus 658 ~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s--------~gf--~~~a~~~~~~~l~~~-~~~~~s~~~i~~ 726 (741)
|++++.++..++++..+........+++.....+..... +|. ........+-..+.. .....+.+++..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 999999999999998875322223566666555554442 333 233333333333322 445677777776
Q ss_pred HHHH
Q psy11254 727 LLLG 730 (741)
Q Consensus 727 ~l~g 730 (741)
++..
T Consensus 270 ~~~~ 273 (389)
T 1fnn_A 270 SSKE 273 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=9.9e-11 Score=126.31 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=102.5
Q ss_pred CCCcccccChHHHHHHHHHHh-hccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHh-cCCCceeeecccccch
Q psy11254 167 DITYSAIGGLSEQIRELREVI-ELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ-LDANFLKVVSSLFVTS 244 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i-~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~-l~~~~~~v~~~~~~~~ 244 (741)
..+++++.|.+.+++.++..+ .. -..+. ++|+|||||||||+++++++. .++..+.+.....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~--- 73 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR--- 73 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce---
Confidence 346889999999999888766 21 12334 899999999999999999995 4554443321100
Q ss_pred hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH--------------hcCCeEEEeccccc
Q psy11254 245 KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR--------------NHQPCIIFMDEIDA 310 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~--------------~~~P~ILllDEid~ 310 (741)
++...... ............+....+. ........+++.+..+. ..+|.|++|||
T Consensus 74 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE--- 142 (354)
T 1sxj_E 74 --QFVTASNR--KLELNVVSSPYHLEITPSD----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINE--- 142 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEEC---
T ss_pred --eecccccc--cceeeeecccceEEecHhh----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeC---
Confidence 00000000 0000000000000000000 00000012333333321 34788999999
Q ss_pred cccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 311 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 311 l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
++. +|...+..+..++.+.. .++++|++||+++.+.+.+.+ |+ ..+.|++|+.++...+
T Consensus 143 -------~~~-L~~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~ 201 (354)
T 1sxj_E 143 -------ANS-LTKDAQAALRRTMEKYS-----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTI 201 (354)
T ss_dssp -------TTS-SCHHHHHHHHHHHHHST-----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred -------ccc-cCHHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHH
Confidence 444 67778888888887753 367999999999999888877 55 6789999998887665
No 188
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.21 E-value=1.6e-10 Score=123.68 Aligned_cols=217 Identities=19% Similarity=0.213 Sum_probs=128.4
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHH
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~ 249 (741)
+.++.|.+++++.+...+.. ..+++|+||||||||+++++++..++..+..+.........
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~---- 86 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS---- 86 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH----
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh----
Confidence 45688999988888776542 24799999999999999999999998887776542111110
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhc---CCeEEEeccccccccccCCCCCCccHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNH---QPCIIFMDEIDAIGGRRFSEGTSADREI 326 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~---~P~ILllDEid~l~~~~~~p~~~lD~~~ 326 (741)
.+.+... .....|.. .... ..+||||||+|.+ ++..
T Consensus 87 ~l~g~~~--------------------~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~-----------~~~~ 125 (331)
T 2r44_A 87 DLIGTMI--------------------YNQHKGNF----------EVKKGPVFSNFILADEVNRS-----------PAKV 125 (331)
T ss_dssp HHHEEEE--------------------EETTTTEE----------EEEECTTCSSEEEEETGGGS-----------CHHH
T ss_pred hcCCcee--------------------ecCCCCce----------EeccCcccccEEEEEccccC-----------CHHH
Confidence 1111000 00000000 0001 1369999998864 3455
Q ss_pred HHHHHHHHHhcc----C--CCCCCCeEEEEeeCCCC-----CCCccccCCCccceeeecCCCCHHHHHhccccchhccCC
Q psy11254 327 QRTLMELLNQMD----G--FDSLGQVKMIMATNRPD-----TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGP 395 (741)
Q Consensus 327 ~~~l~~lL~~l~----~--~~~~~~v~vI~at~~~~-----~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~ 395 (741)
+..|.+.+.+-. + .....++.+|+++|..+ .+++++++ ||+..+.++.|+.+++.++ +..+...
T Consensus 126 ~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~i---l~~~~~~ 200 (331)
T 2r44_A 126 QSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEV---MRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHH---HHHHHCT
T ss_pred HHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHH---HHhcccc
Confidence 666777766421 0 00123456666666333 28889988 9988899999999999887 4333221
Q ss_pred Ccc--------------------cCCCC---HHHHHHh-------------------cCCCCHHHHHHHHHHHHHHHHhh
Q psy11254 396 IAK--------------------HGEID---YEAVVKL-------------------SDSFNGADLRNVCTEAGLFAIRS 433 (741)
Q Consensus 396 ~~~--------------------~~~~~---~~~la~~-------------------t~g~~gadi~~l~~~A~~~a~~~ 433 (741)
... ...++ ...++.. ..+.+.+....+++.|...+.-.
T Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 201 NFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp TCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred CcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 100 00011 1122211 11446777777777766666656
Q ss_pred hccccchHhHHHHHHHhc
Q psy11254 434 EREYVTQEDFMKAVRKVS 451 (741)
Q Consensus 434 ~~~~i~~~d~~~a~~~~~ 451 (741)
.+..++.+++..++..+.
T Consensus 281 g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 281 NRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp TCSBCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 666778888877776554
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=2.6e-11 Score=137.73 Aligned_cols=231 Identities=19% Similarity=0.282 Sum_probs=122.1
Q ss_pred CCcccccChHHHHHHHHHHhhccC-CChHHHhhhCCC---CCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPL-LNPELFQRVGIT---PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT 243 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~-~~~~~~~~~~l~---~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~ 243 (741)
.+++++.|.+++++++.+.+.... ..+..++..+.. .+++++|+|||||||||+|+++|..++..+..+.......
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 478999999999999999886411 111222222222 4567999999999999999999999988777776533221
Q ss_pred hhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc
Q psy11254 244 SKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
.. .+.. . ...... ...+..+...... .......++||||||+|.+....
T Consensus 116 ~~-~~~~----~----i~~~~~--------~~~~~~~~~~~~~------~~~~~~~~~vliIDEid~l~~~~-------- 164 (516)
T 1sxj_A 116 KT-LLNA----G----VKNALD--------NMSVVGYFKHNEE------AQNLNGKHFVIIMDEVDGMSGGD-------- 164 (516)
T ss_dssp HH-HHHH----T----GGGGTT--------BCCSTTTTTC----------CCSSTTSEEEEECSGGGCCTTS--------
T ss_pred HH-HHHH----H----HHHHhc--------cccHHHHHhhhhh------hhhccCCCeEEEEECCCccchhh--------
Confidence 11 0000 0 000000 0000011110000 00123578899999999986421
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC--CCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPD--TLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~--~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
......|..++..- ++.+|+++++.. .+++ +. ++...+.|+.|+.+++..++....... ..... +
T Consensus 165 ~~~l~~L~~~l~~~-------~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~-~~~i~-~ 231 (516)
T 1sxj_A 165 RGGVGQLAQFCRKT-------STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIRE-KFKLD-P 231 (516)
T ss_dssp TTHHHHHHHHHHHC-------SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHH-TCCCC-T
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHc-CCCCC-H
Confidence 11234455555432 335677777654 2332 32 445689999999988877632211111 11111 2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHH
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVR 448 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 448 (741)
..+..++..+.| +++.++......+. ....++.+++..++.
T Consensus 232 ~~l~~la~~s~G----diR~~i~~L~~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 232 NVIDRLIQTTRG----DIRQVINLLSTIST--TTKTINHENINEISK 272 (516)
T ss_dssp THHHHHHHHTTT----CHHHHHHHHTHHHH--HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 235667777654 33333332221121 234466666555444
No 190
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.20 E-value=3.5e-10 Score=121.26 Aligned_cols=215 Identities=17% Similarity=0.225 Sum_probs=133.9
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHH
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~ 248 (741)
+++++.|-+.+++.+...+..... . + ..+..++|+||||||||||+++||+.++..+...++.....
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~-----~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM-----R--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----H--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh-----c--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 677888888888887766642100 0 1 23356899999999999999999999987665544421110
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
+ ..+...+.. ...++|+|+||++.+.. ....
T Consensus 90 ---------------------------------~---~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e 120 (334)
T 1in4_A 90 ---------------------------------Q---GDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEE 120 (334)
T ss_dssp ---------------------------------H---HHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHH
T ss_pred ---------------------------------H---HHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHH
Confidence 0 111112211 23567999999987742 2233
Q ss_pred HHHHHHHhcc-------CCC------CCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCC
Q psy11254 329 TLMELLNQMD-------GFD------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGP 395 (741)
Q Consensus 329 ~l~~lL~~l~-------~~~------~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~ 395 (741)
.+...+.... +.. ....+.++.+|+++..+++.+.+ ||...+.+++|+..+..+++...... ..
T Consensus 121 ~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~-~~ 197 (334)
T 1in4_A 121 LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASL-MD 197 (334)
T ss_dssp HHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHH-cC
Confidence 4433332211 000 01246788899999999999988 88878899999999888773222111 11
Q ss_pred CcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHh
Q psy11254 396 IAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450 (741)
Q Consensus 396 ~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 450 (741)
.. ..+.....++..+.|. .+.+.++++.+...+.......++.++...++...
T Consensus 198 ~~-~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 198 VE-IEDAAAEMIAKRSRGT-PRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp CC-BCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CC-cCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 11 1111245667777664 46777888877766665556678888888777664
No 191
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.19 E-value=8e-13 Score=131.65 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=70.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc----hhhHHHHHhhhhhhhccccc----cccc-c-c-CCCccch
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT----SKEDMAILMGNQLKRRSTHH----LEKT-Y-F-PFYSSAI 276 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~----l~~~-~-~-~~~~~~~ 276 (741)
++|+||||||||||+++|+|. .++.+++....... ....++++.++. ...+... .... . . .....+.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~~~~~~~~~~~~~~~~~~~~~~~ 102 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKIDPYLRPLHDALRDMVEPEVIPKL 102 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCTTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 789999999999999999999 77666653210000 000011111110 0000000 0000 0 0 0000111
Q ss_pred hhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 277 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 277 ~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
+.. ..|+++++ .+++|+..+|++|+||| |+++ .+..+.+++..+ . .+.+|| +||+++
T Consensus 103 l~~-glGq~qrv--~lAraL~~~p~lllLDE----------Pts~----~~~~l~~~l~~l-~----~g~tii-vtHd~~ 159 (208)
T 3b85_A 103 MEA-GIVEVAPL--AYMRGRTLNDAFVILDE----------AQNT----TPAQMKMFLTRL-G----FGSKMV-VTGDIT 159 (208)
T ss_dssp HHT-TSEEEEEG--GGGTTCCBCSEEEEECS----------GGGC----CHHHHHHHHTTB-C----TTCEEE-EEEC--
T ss_pred HHh-CCchHHHH--HHHHHHhcCCCEEEEeC----------Cccc----cHHHHHHHHHHh-c----CCCEEE-EECCHH
Confidence 222 22667777 89999999999999999 8887 567778888776 2 356888 999998
Q ss_pred CCC
Q psy11254 357 TLD 359 (741)
Q Consensus 357 ~ld 359 (741)
.++
T Consensus 160 ~~~ 162 (208)
T 3b85_A 160 QVD 162 (208)
T ss_dssp ---
T ss_pred HHh
Confidence 776
No 192
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.6e-11 Score=126.83 Aligned_cols=170 Identities=8% Similarity=0.018 Sum_probs=102.6
Q ss_pred ccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC----------Cceeeeccccc
Q psy11254 173 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA----------NFLKVVSSLFV 242 (741)
Q Consensus 173 i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~----------~~~~v~~~~~~ 242 (741)
+-|-+++.++|...+.-. +.-..+.+++|+||||||||++++.++..+.. .+..+.+....
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 456677777777666421 11234556999999999999999999999842 23344432222
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHH--HhcCCeEEEeccccccccccCCCCC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA--RNHQPCIIFMDEIDAIGGRRFSEGT 320 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A--~~~~P~ILllDEid~l~~~~~~p~~ 320 (741)
....-+..+...- .+ .. ...|.....++..|..+ ....|.|++|||+|.+.
T Consensus 93 t~~~~~~~I~~~L-----------~g-----~~---~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------- 145 (318)
T 3te6_A 93 GMDALYEKIWFAI-----------SK-----EN---LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------- 145 (318)
T ss_dssp --HHHHHHHHHHH-----------SC-----CC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--------
T ss_pred CHHHHHHHHHHHh-----------cC-----CC---CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--------
Confidence 2221111111100 00 00 01233445566677764 34568899999999986
Q ss_pred CccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCC--Cccc-eeeecCCCCHHHHHhc
Q psy11254 321 SADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP--GRLD-RKIEIPLPNEQARLAH 385 (741)
Q Consensus 321 ~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~--gr~d-~~i~~~~p~~~~r~~i 385 (741)
+ +..|..++..... ..+++.+|+++|+++..+..+.++ .|+. ..|.|++++.++-..|
T Consensus 146 --~---q~~L~~l~~~~~~--~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 146 --S---EKILQYFEKWISS--KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQM 206 (318)
T ss_dssp --C---THHHHHHHHHHHC--SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred --c---chHHHHHHhcccc--cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHH
Confidence 1 2455666553321 246789999999998655433221 2665 6799999999888776
No 193
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.18 E-value=3.6e-10 Score=121.16 Aligned_cols=184 Identities=23% Similarity=0.315 Sum_probs=117.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE 602 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~ 602 (741)
++..++|+|||||||||+++++|+.++.++...+++.+.. ...+..++... ..++|+|+||++.+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~~--~~~~v~~iDE~~~l~~----- 116 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSL--ERGDVLFIDEIHRLNK----- 116 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHC--CTTCEEEEETGGGCCH-----
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHHc--cCCCEEEEcchhhcCH-----
Confidence 3467999999999999999999999998877666554321 22233444322 2457999999998742
Q ss_pred CCcccHHHHHHHHHHHHHcc-------CCC------CCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 603 GTSADREIQRTLMELLNQMD-------GFD------SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 603 ~~~~~~~~~~~l~~lL~~~~-------g~~------~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
...+.+...+.... +.. ....+.++++||++..+++++.+ ||...+.+++|+.+++.+|
T Consensus 117 ------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~i 188 (334)
T 1in4_A 117 ------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEI 188 (334)
T ss_dssp ------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHH
T ss_pred ------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHH
Confidence 12333433333221 000 01246678899999999999998 9999999999999999999
Q ss_pred HHHhhcCccccCCCCcccccccccccc-cchHHHHHHHhhhhhhh-cCCCcccHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTA-GGFIYIATVSVIPELLE-DTSPKQTVKEILALLL 729 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s-~gf~~~a~~~~~~~l~~-~~~~~~s~~~i~~~l~ 729 (741)
++...... +..+++.....++.... ..+.....+..+...+. ......+.+++..++.
T Consensus 189 L~~~~~~~--~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 189 IKRAASLM--DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHT--TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHc--CCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 99876532 23455555444443322 22333444444333332 2344577777776654
No 194
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.16 E-value=1.4e-10 Score=122.85 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=100.1
Q ss_pred ceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhccccchHHHHHHHHHHHH-H-hcCCeEEEEcccccccCC
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVDKYIGESARLIREMFNYA-R-NHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a-~-~~~p~Vl~iDE~d~~~~~ 598 (741)
+++|+||||||||++|++++..+ +.+++.+++++..+. ......+....... . ...+.|++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~- 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA- 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-
Confidence 49999999999999999999986 345777777654321 11111122222111 1 13478999999998631
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
...+.|+..++.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.+++.++++..+...
T Consensus 117 -------------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~- 177 (319)
T 2chq_A 117 -------------DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE- 177 (319)
T ss_dssp -------------HHHHTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHc-
Confidence 2234455556532 3578899999999999999988 886 89999999999999999887642
Q ss_pred ccCCCCccccccccc
Q psy11254 679 KHGEIGDAATKWVLP 693 (741)
Q Consensus 679 ~~~~~~~~a~~~l~~ 693 (741)
+..+++.+...+..
T Consensus 178 -~~~i~~~~l~~l~~ 191 (319)
T 2chq_A 178 -GVKITEDGLEALIY 191 (319)
T ss_dssp -CCCBCHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHH
Confidence 23456666655553
No 195
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.16 E-value=7.4e-12 Score=147.72 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=67.4
Q ss_pred ccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC---CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhc
Q psy11254 262 HHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 337 (741)
Q Consensus 262 ~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~---P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l 337 (741)
..++.+++.. .....+..+|||++|++ .+++++..+ |.||+||| |++++|......+.+++..+
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRI--KLATELRRSGRGGTVYVLDE----------PTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHH--HHHHTTSSCCSSCEEEEEEC----------TTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHH--HHHHHHHhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHH
Confidence 3444455544 24677899999999999 999999986 79999999 99999999999999999988
Q ss_pred cCCCCCCCeEEEEeeCCCCCC
Q psy11254 338 DGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 338 ~~~~~~~~v~vI~at~~~~~l 358 (741)
.. .+.+||++||+++++
T Consensus 780 ~~----~G~tVIvisHdl~~i 796 (842)
T 2vf7_A 780 VD----AGNTVIAVEHKMQVV 796 (842)
T ss_dssp HH----TTCEEEEECCCHHHH
T ss_pred Hh----CCCEEEEEcCCHHHH
Confidence 64 366999999998876
No 196
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.5e-10 Score=124.75 Aligned_cols=143 Identities=22% Similarity=0.318 Sum_probs=97.3
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCc------cEEEEechhhhccccchHHHHHHHHHHH-HH---------------hc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDA------NFLKVVSSAIVDKYIGESARLIREMFNY-AR---------------NH 582 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~------~~~~v~~~~l~~~~~g~s~~~i~~~f~~-a~---------------~~ 582 (741)
.+++|+||||||||++++++++.+.. .++.+++++..+ ...++..+.. .. ..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCP 132 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCC
Confidence 34999999999999999999998642 466776665311 1112221111 11 12
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
.+.||||||++.+. ......+..++++.. .++.+|++||.++.+++++.+ |+. .+.|++|+
T Consensus 133 ~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~-----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMT-----------ADAQSALRRTMETYS-----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT-----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccC-----------HHHHHHHHHHHHhcC-----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 45699999999863 223445555555432 356688899999999999988 886 89999999
Q ss_pred HHHHHHHHHHhhcCccccCCCCcccccccccc
Q psy11254 663 EQARLEILKIHAGPIAKHGEIGDAATKWVLPF 694 (741)
Q Consensus 663 ~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~ 694 (741)
.++...+++..+... +..+++.+...+...
T Consensus 194 ~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~~ 223 (353)
T 1sxj_D 194 ASNAIDRLRFISEQE--NVKCDDGVLERILDI 223 (353)
T ss_dssp HHHHHHHHHHHHHTT--TCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCCHHHHHHHHHH
Confidence 999999999876532 234566665555443
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=3.6e-10 Score=121.66 Aligned_cols=220 Identities=17% Similarity=0.154 Sum_probs=119.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCC------Cceeeecccc
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA------NFLKVVSSLF 241 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~------~~~~v~~~~~ 241 (741)
.+++++.|.+++++.+...+... .+ .+++|+|||||||||+++++++.+.. .+..+.....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA------------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT------------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC------------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 46889999999999998877531 11 23899999999999999999998753 1222221100
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
.+. ..+... ... ... ..+...... .........+.||||||+|.+.
T Consensus 101 -~~~---~~~~~~-~~~----~~~---------~~~~~~~~~-------~~~~~~~~~~~vliiDE~~~l~--------- 146 (353)
T 1sxj_D 101 -RGI---SIVREK-VKN----FAR---------LTVSKPSKH-------DLENYPCPPYKIIILDEADSMT--------- 146 (353)
T ss_dssp -CCH---HHHTTH-HHH----HHH---------SCCCCCCTT-------HHHHSCCCSCEEEEETTGGGSC---------
T ss_pred -cch---HHHHHH-HHH----Hhh---------hcccccchh-------hcccCCCCCceEEEEECCCccC---------
Confidence 000 000000 000 000 000000000 0000112356799999988763
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccCCCcccCC
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGE 401 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~~~~~~~~ 401 (741)
+..+..|..++.+.. .+..+|++||+++.+++.+.+ |+. .+.+++|+..+...++..... ...... .+
T Consensus 147 --~~~~~~Ll~~le~~~-----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~-~~~~~i-~~ 214 (353)
T 1sxj_D 147 --ADAQSALRRTMETYS-----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE-QENVKC-DD 214 (353)
T ss_dssp --HHHHHHHHHHHHHTT-----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH-TTTCCC-CH
T ss_pred --HHHHHHHHHHHHhcC-----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH-HhCCCC-CH
Confidence 344566667666543 356788899999988888877 665 788988888877665221111 111111 11
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhc-cccchHhHHHHH
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSER-EYVTQEDFMKAV 447 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~-~~i~~~d~~~a~ 447 (741)
.....++..+.|.. +.+.++++.+...+-+... ..++.+++....
T Consensus 215 ~~l~~l~~~~~G~~-r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 215 GVLERILDISAGDL-RRGITLLQSASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp HHHHHHHHHTSSCH-HHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHhcCCCccCccccHHHHHHHh
Confidence 12456677776643 4444445444433222111 157777766544
No 198
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.5e-12 Score=139.68 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=92.2
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCce-e-eecccc--------------------cchhhHHHHHh--
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFL-K-VVSSLF--------------------VTSKEDMAILM-- 252 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~-~-v~~~~~--------------------~~~~~~~~~~~-- 252 (741)
++++.+.+| ++|+||||||||||+|+|+|.+.+..+ + +..... ....+++ +..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccc
Confidence 567777788 889999999999999999998866555 4 321100 0000011 000
Q ss_pred --hhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHH--HhcCCeE----EEeccccccccccCCCCCCccH
Q psy11254 253 --GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA--RNHQPCI----IFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 253 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A--~~~~P~I----LllDEid~l~~~~~~p~~~lD~ 324 (741)
+.....++..+++.+++..... ..++|||+.+++ ++++| +..+|.+ |||||. |++++|+
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrl--alAra~rL~~~p~i~~sGLlLDEp---------Pts~LD~ 275 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQL--GQVVGQRLHLDPQVRRSGCIVDTP---------SISQLDE 275 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHH--HHHHHHHHHHCHHHHHSCEEEECC---------CGGGSCS
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHH--HHHHHHHhccCcccCcceEEEeCC---------cccccCh
Confidence 0011133445555666554433 789999999999 89999 9999999 999992 5677887
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
. ...+.+++..+ ++++|++||+.+
T Consensus 276 ~-~~~l~~l~~~~-------~~tviiVth~~~ 299 (460)
T 2npi_A 276 N-LAELHHIIEKL-------NVNIMLVLCSET 299 (460)
T ss_dssp S-CHHHHHHHHHT-------TCCEEEEECCSS
T ss_pred h-HHHHHHHHHHh-------CCCEEEEEccCc
Confidence 7 66667776654 236899999876
No 199
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.13 E-value=2.2e-10 Score=128.54 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=114.2
Q ss_pred ccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC--ceeeecccccchhhHHHH
Q psy11254 173 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSLFVTSKEDMAI 250 (741)
Q Consensus 173 i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~--~~~v~~~~~~~~~~~~~~ 250 (741)
+.|.+++++.+...+.. ..+++|+||||||||+||++|+..++.. |..+... ....
T Consensus 24 ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~--~~t~----- 81 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR--FSTP----- 81 (500)
T ss_dssp CSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT--TCCH-----
T ss_pred hHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh--cCCH-----
Confidence 56777777666544321 2359999999999999999999988542 2111110 0011
Q ss_pred HhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh---cCCeEEEeccccccccccCCCCCCccHHHH
Q psy11254 251 LMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN---HQPCIIFMDEIDAIGGRRFSEGTSADREIQ 327 (741)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~---~~P~ILllDEid~l~~~~~~p~~~lD~~~~ 327 (741)
+++++.+.+..... ...+..+.. ..|+||||||++. +++..+
T Consensus 82 -----------------------~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r-----------~~~~~q 126 (500)
T 3nbx_X 82 -----------------------EEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK-----------AGPAIL 126 (500)
T ss_dssp -----------------------HHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG-----------CCHHHH
T ss_pred -----------------------HHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh-----------hcHHHH
Confidence 11111111111000 001111111 1478999999864 345567
Q ss_pred HHHHHHHHhcc----CCC-CCCCeEEEEeeCCCCC---CCccccCCCccceeeecCCCCH-HHHHhccccchhccCCC--
Q psy11254 328 RTLMELLNQMD----GFD-SLGQVKMIMATNRPDT---LDPALLRPGRLDRKIEIPLPNE-QARLAHTWPISIHAGPI-- 396 (741)
Q Consensus 328 ~~l~~lL~~l~----~~~-~~~~v~vI~at~~~~~---ld~al~r~gr~d~~i~~~~p~~-~~r~~i~~~l~~~~~~~-- 396 (741)
..|.+.+.+-. +.. ......+|++||.+.. ..+++++ ||...+.++.|+. +++..| +..+....
T Consensus 127 ~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~I---L~~~~~~~~~ 201 (500)
T 3nbx_X 127 NTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSM---LTSQQDENDN 201 (500)
T ss_dssp HHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHH---HTCCCCTTSC
T ss_pred HHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHH---HhcccccCCC
Confidence 77777775311 110 1122346888986433 2347777 8888899999987 566666 33322110
Q ss_pred --ccc-----------------CCCC---HHHHHHhc---------CCCCHHHHHHHHHHHHHHHHhhhccccchHhHH
Q psy11254 397 --AKH-----------------GEID---YEAVVKLS---------DSFNGADLRNVCTEAGLFAIRSEREYVTQEDFM 444 (741)
Q Consensus 397 --~~~-----------------~~~~---~~~la~~t---------~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~ 444 (741)
... ..++ .+.++... .+.+.+....+++.|...|....+..++.+|+.
T Consensus 202 ~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 202 PVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp CSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred CCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 000 0011 12222222 466777777788777777777777778887776
No 200
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.13 E-value=2e-11 Score=145.24 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=65.3
Q ss_pred cchhhhhcchHHHHHHHHHHHHHhcCC---eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 274 SAIVDKYIGESARLIREMFNYARNHQP---CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~~~P---~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
.+.+..+|||++|++ .+++|+..+| .||+||| ||+++|+.....+.++|..+.. .+.+||+
T Consensus 800 gq~~~~LSGGErQRV--~LAraL~~~p~~p~LLILDE----------PTsGLD~~~~~~L~~lL~~L~~----~G~TVIv 863 (916)
T 3pih_A 800 GQPATTLSGGEAQRI--KLASELRKRDTGRTLYILDE----------PTVGLHFEDVRKLVEVLHRLVD----RGNTVIV 863 (916)
T ss_dssp TCCSTTCCHHHHHHH--HHHHHHTSCCCSSEEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEE
T ss_pred cCCccCCCHHHHHHH--HHHHHHhhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHh----cCCEEEE
Confidence 456789999999999 9999998765 7999999 9999999999999999998853 3568999
Q ss_pred eeCCCCCCCccccCCCccceeeec
Q psy11254 351 ATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 351 at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
+||+++.+. ..|+.+.+
T Consensus 864 I~HdL~~i~-------~ADrIivL 880 (916)
T 3pih_A 864 IEHNLDVIK-------NADHIIDL 880 (916)
T ss_dssp ECCCHHHHT-------TCSEEEEE
T ss_pred EeCCHHHHH-------hCCEEEEe
Confidence 999987653 34666665
No 201
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.12 E-value=5.6e-11 Score=128.85 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=59.8
Q ss_pred cchhhhhcchHHHHHHHHHHHHHh------cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeE
Q psy11254 274 SAIVDKYIGESARLIREMFNYARN------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~------~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~ 347 (741)
...+..+|||+++++ .+++|+. .+|++||||| |++++|+.....+.+++..+.. .+.+
T Consensus 274 ~~~~~~LSgGe~qr~--~la~al~~~~~~~~~p~~lllDE----------pt~~LD~~~~~~~~~~l~~l~~----~g~t 337 (365)
T 3qf7_A 274 ERPARGLSGGERALI--SISLAMSLAEVASGRLDAFFIDE----------GFSSLDTENKEKIASVLKELER----LNKV 337 (365)
T ss_dssp EEEGGGSCHHHHHHH--HHHHHHHHHHHTTTTCCEEEEES----------CCTTSCHHHHHHHHHHHHGGGG----SSSE
T ss_pred CCCchhCCHHHHHHH--HHHHHHHhhhcccCCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHh----CCCE
Confidence 356788999999999 8888877 6999999999 9999999999999999998864 3679
Q ss_pred EEEeeCCCCC
Q psy11254 348 MIMATNRPDT 357 (741)
Q Consensus 348 vI~at~~~~~ 357 (741)
||++||+++.
T Consensus 338 vi~itH~~~~ 347 (365)
T 3qf7_A 338 IVFITHDREF 347 (365)
T ss_dssp EEEEESCHHH
T ss_pred EEEEecchHH
Confidence 9999999865
No 202
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.12 E-value=1.8e-11 Score=144.59 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=70.9
Q ss_pred cccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC---CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 263 HLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 263 ~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~---P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
.++.+++.. .....+..+|||++|++ .+++++..+ |.|||||| |++++|+..+..+.+++..+.
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~ 895 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRV--KLAAELHRRSNGRTLYILDE----------PTTGLHVDDIARLLDVLHRLV 895 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHH--HHHHHHSSCCCSCEEEEEEC----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHH--HHHHHHhcCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH
Confidence 344455544 45677899999999999 999999976 49999999 999999999999999998885
Q ss_pred CCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 339 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
. .+.+||++||+++.+. ..|+.+.+
T Consensus 896 ~----~G~TVIvisHdl~~i~-------~aDrIivL 920 (972)
T 2r6f_A 896 D----NGDTVLVIEHNLDVIK-------TADYIIDL 920 (972)
T ss_dssp H----TTCEEEEECCCHHHHT-------TCSEEEEE
T ss_pred h----CCCEEEEEcCCHHHHH-------hCCEEEEE
Confidence 4 3669999999987642 24555655
No 203
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=4.1e-10 Score=119.49 Aligned_cols=173 Identities=14% Similarity=0.171 Sum_probs=110.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhccccchHHHHHHHHHHHHH-------hcCCeEEEEcccc
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVDKYIGESARLIREMFNYAR-------NHQPCIIFMDEID 593 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~-------~~~p~Vl~iDE~d 593 (741)
+++|+||+|+|||+++++++..+ ..+++.+++++..+ ...++.+++... ...++|++|||++
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 39999999999999999999986 34467776654311 233455555443 2347899999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHh
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~ 673 (741)
.+. ......+..++++ ...++.+|++||.++.+++++.+ |+. .+.|++|+.+++.++++..
T Consensus 118 ~l~-----------~~~~~~L~~~le~-----~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 118 SMT-----------AGAQQALRRTMEL-----YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp GSC-----------HHHHHTTHHHHHH-----TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHH
T ss_pred cCC-----------HHHHHHHHHHHhc-----cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHH
Confidence 863 1223444455554 23467889999999999999987 776 8999999999999999987
Q ss_pred hcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHH
Q psy11254 674 AGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728 (741)
Q Consensus 674 ~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l 728 (741)
+... +..+++.+...+.... +|....+ ...+..+... ....+.+++..++
T Consensus 179 ~~~~--~~~~~~~~~~~l~~~~-~G~~r~a-~~~l~~~~~~-~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 179 IKLE--DVKYTNDGLEAIIFTA-EGDMRQA-INNLQSTVAG-HGLVNADNVFKIV 228 (323)
T ss_dssp HHHH--TCCBCHHHHHHHHHHH-TTCHHHH-HHHHHHHHHH-HSSBCHHHHHHHH
T ss_pred HHHc--CCCCCHHHHHHHHHHc-CCCHHHH-HHHHHHHHhc-CCCcCHHHHHHHH
Confidence 6532 2235555555444433 3333222 1222222211 1245666665554
No 204
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.11 E-value=3.7e-11 Score=142.54 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=65.4
Q ss_pred ccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC---CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccC
Q psy11254 264 LEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339 (741)
Q Consensus 264 l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~---P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~ 339 (741)
++.+++.. .....+..+|||++|++ .+++++..+ |.||+||| |++++|+.....+.+++..+..
T Consensus 847 L~~lgL~~~~l~~~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~ 914 (993)
T 2ygr_A 847 LVDVGLGYVRLGQPAPTLSGGEAQRV--KLASELQKRSTGRTVYILDE----------PTTGLHFDDIRKLLNVINGLVD 914 (993)
T ss_dssp HHHTTGGGSBTTCCGGGSCHHHHHHH--HHHHHHSSCCCSSEEEEEES----------TTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCccccCCHHHHHHH--HHHHHHHhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHh
Confidence 34444443 34667889999999999 999999976 49999999 9999999999999999988853
Q ss_pred CCCCCCeEEEEeeCCCCCC
Q psy11254 340 FDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 340 ~~~~~~v~vI~at~~~~~l 358 (741)
.+.+||++||+++.+
T Consensus 915 ----~G~TVIvisHdl~~i 929 (993)
T 2ygr_A 915 ----KGNTVIVIEHNLDVI 929 (993)
T ss_dssp ----TTCEEEEECCCHHHH
T ss_pred ----CCCEEEEEcCCHHHH
Confidence 356999999998765
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=1.7e-10 Score=112.08 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchH
Q psy11254 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES 284 (741)
Q Consensus 205 ~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 284 (741)
..+++|+||||||||||++++++.+.+..+.... ++........+. ..+..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~--~~~~~~~~~~~~-------------------------~~~~~~~ 90 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY--FFDTKDLIFRLK-------------------------HLMDEGK 90 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC--EEEHHHHHHHHH-------------------------HHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE--EEEHHHHHHHHH-------------------------HHhcCch
Confidence 4558999999999999999999988432221100 011111010000 0011000
Q ss_pred HHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCC
Q psy11254 285 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 285 ~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ 357 (741)
... .+. ...+|++|+|||++. .++|+..+..+.++++.... .+.++|++||.+..
T Consensus 91 ~~~---~~~--~~~~~~llilDE~~~---------~~~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 DTK---FLK--TVLNSPVLVLDDLGS---------ERLSDWQRELISYIITYRYN----NLKSTIITTNYSLQ 145 (180)
T ss_dssp CSH---HHH--HHHTCSEEEEETCSS---------SCCCHHHHHHHHHHHHHHHH----TTCEEEEECCCCSC
T ss_pred HHH---HHH--HhcCCCEEEEeCCCC---------CcCCHHHHHHHHHHHHHHHH----cCCCEEEEcCCChh
Confidence 001 111 124789999999432 36788888888888877642 35688999987643
No 206
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.09 E-value=5.9e-10 Score=120.90 Aligned_cols=174 Identities=18% Similarity=0.275 Sum_probs=108.3
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCcc------------------------EEEEechhhhccccchHHHHHHHHHHHHH
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDAN------------------------FLKVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~------------------------~~~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
..++|+||+|+|||++++++++.+... ++.+..+.- . ....++.+++.+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~ 112 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR--T----KVEDTRDLLDNVQ 112 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS--C----CSSCHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc--C----CHHHHHHHHHHHh
Confidence 357999999999999999999987532 233332210 1 1123456666654
Q ss_pred h----cCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEE
Q psy11254 581 N----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKI 656 (741)
Q Consensus 581 ~----~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i 656 (741)
. ..+.|++|||++.+. .. ..+.++..++. ...++++|++||.+..+++++.+ |+ ..+
T Consensus 113 ~~~~~~~~~vliiDe~~~l~-----------~~---~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i 173 (373)
T 1jr3_A 113 YAPARGRFKVYLIDEVHMLS-----------RH---SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQF 173 (373)
T ss_dssp SCCSSSSSEEEEEECGGGSC-----------HH---HHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred hccccCCeEEEEEECcchhc-----------HH---HHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEe
Confidence 3 246899999999862 12 23444455543 33478899999999999999987 76 789
Q ss_pred EcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHH
Q psy11254 657 EIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILAL 727 (741)
Q Consensus 657 ~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~ 727 (741)
.|++|+.++..++++..+... +..+++.+...+.... +|....+ ...+..++.......+.+++..+
T Consensus 174 ~~~~l~~~~~~~~l~~~~~~~--~~~~~~~a~~~l~~~~-~G~~r~~-~~~l~~~~~~~~~~i~~~~v~~~ 240 (373)
T 1jr3_A 174 HLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLARAA-EGSLRDA-LSLTDQAIASGDGQVSTQAVSAM 240 (373)
T ss_dssp ECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHHHS-SSCHHHH-HHHHHHHHHHTTTCBCHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHC-CCCHHHH-HHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999877532 2244555555444333 3433322 22222222222334555555444
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.06 E-value=9.1e-10 Score=117.98 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=94.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCc------------------------cEEEEechhhhccccchHHHHHHHHHHHH
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDA------------------------NFLKVVSSAIVDKYIGESARLIREMFNYA 579 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~------------------------~~~~v~~~~l~~~~~g~s~~~i~~~f~~a 579 (741)
+..++|+||+|+|||++|+++|..+.. ++..+.+.+- ++.. +...++.+++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~~--~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCCC--CHHHHHHHHHHH
Confidence 345899999999999999999998742 2343333210 1111 234567777776
Q ss_pred Hhc----CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceE
Q psy11254 580 RNH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRK 655 (741)
Q Consensus 580 ~~~----~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~ 655 (741)
... .+.|++|||+|.+. ....+.||..++. +..++++|++||.++.+.|++.+ |.. .
T Consensus 101 ~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~ 161 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-L 161 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred hhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-e
Confidence 532 36899999999862 1234567777763 44578899999999999999988 774 7
Q ss_pred EEcCCCCHHHHHHHHHHhh
Q psy11254 656 IEIPLPNEQARLEILKIHA 674 (741)
Q Consensus 656 i~~~~p~~~~r~~i~~~~~ 674 (741)
+.|++|+.++..++++...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC
T ss_pred eeCCCCCHHHHHHHHHHhc
Confidence 9999999999999998765
No 208
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=7.4e-11 Score=135.80 Aligned_cols=137 Identities=23% Similarity=0.272 Sum_probs=87.3
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE----echhhhccccchHHH----HHHHHHHHHHhcCCeEEEEcccc
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV----VSSAIVDKYIGESAR----LIREMFNYARNHQPCIIFMDEID 593 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v----~~~~l~~~~~g~s~~----~i~~~f~~a~~~~p~Vl~iDE~d 593 (741)
....++||+||||||||++|++++..++..++.. ++.++.......... .....+..| ..+|+||||+|
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid 401 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEID 401 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTT
T ss_pred CCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhh
Confidence 3445799999999999999999999987665442 222332222211100 000122223 34699999999
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHcc------CC--CCCCCeEEEEeeCCCC-------------CCCccccCCCCc
Q psy11254 594 AIGGRRFSEGTSADREIQRTLMELLNQMD------GF--DSLGQVKMIMATNRPD-------------TLDPALLRPGRL 652 (741)
Q Consensus 594 ~~~~~r~~~~~~~~~~~~~~l~~lL~~~~------g~--~~~~~v~vi~tTn~~~-------------~ld~al~rpgR~ 652 (741)
.+. ...+..+.++|++-. |. .-..++.||+|||.+. .+++|+++ ||
T Consensus 402 ~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RF 468 (595)
T 3f9v_A 402 KMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RF 468 (595)
T ss_dssp CCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GC
T ss_pred hCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hC
Confidence 852 234555666665322 11 1123678999999986 89999999 99
Q ss_pred ce-EEEcCCCCHHHHHHHHHHhhc
Q psy11254 653 DR-KIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 653 d~-~i~~~~p~~~~r~~i~~~~~~ 675 (741)
|. .+..+.|+.+ ...|.+..+.
T Consensus 469 Dl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 469 DLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp SCCEEECCTTHHH-HHHHHHHHHT
T ss_pred eEEEEeCCCCCHH-HHHHHHHHHH
Confidence 95 5556777777 7777776554
No 209
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1.2e-09 Score=116.16 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=96.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhC-----ccEEEEechhhhccccchHHHHHHHHHHHH-H-hcCCeEEEEcccccccCC
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLD-----ANFLKVVSSAIVDKYIGESARLIREMFNYA-R-NHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~-----~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a-~-~~~p~Vl~iDE~d~~~~~ 598 (741)
+++|+||||+|||++|++++..+. ..++.+++++..+.. .....+....... . ...+.|++|||++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-- 123 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALT-- 123 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--
Confidence 599999999999999999999863 236777665432210 0011111111110 0 1347899999999862
Q ss_pred CCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhcCcc
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIA 678 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~~~~ 678 (741)
......+..++++. ..++.+|++||.++.+++++.+ |+. .+.|++|+.++..++++..+...
T Consensus 124 ---------~~~~~~L~~~le~~-----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~- 185 (327)
T 1iqp_A 124 ---------QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENE- 185 (327)
T ss_dssp ---------HHHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTT-
T ss_pred ---------HHHHHHHHHHHHhc-----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhc-
Confidence 22344455555542 3467889999999999999987 887 79999999999999998877542
Q ss_pred ccCCCCcccccccccc
Q psy11254 679 KHGEIGDAATKWVLPF 694 (741)
Q Consensus 679 ~~~~~~~~a~~~l~~~ 694 (741)
+..+++.+...+...
T Consensus 186 -~~~~~~~~~~~l~~~ 200 (327)
T 1iqp_A 186 -GLELTEEGLQAILYI 200 (327)
T ss_dssp -TCEECHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHH
Confidence 223555555554443
No 210
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.06 E-value=3.8e-10 Score=99.23 Aligned_cols=101 Identities=33% Similarity=0.556 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEEEE
Q psy11254 30 RLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIV 109 (741)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
|.+.++.+++++.+..+.++++++.+++.|+. |+++++.++++ ++++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~------Vg~v~e~~d~~---------------------------~~iV 54 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPPLL------VGVVSDILEDG---------------------------RVVV 54 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE------EEEEEEECTTS---------------------------CEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce------EEEEEEEecCC---------------------------EEEE
Confidence 55677788888999999999999999999988 99999999987 6899
Q ss_pred ecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccccccccC
Q psy11254 110 KATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 163 (741)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (741)
+.++++++++++.+.++.+.|+||++|+++..++++++.+|.+.||.+..|..+
T Consensus 55 k~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 55 KSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp EETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred EeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 999999999999999999999999999999999999999999999999888654
No 211
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=1.4e-10 Score=133.48 Aligned_cols=168 Identities=23% Similarity=0.214 Sum_probs=88.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHH
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAIL 251 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~ 251 (741)
.|.|.+++|+.+.-.+. -+.+..+.+..+....+++|+||||||||+||++++..++......... .... .+
T Consensus 296 ~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~--~~~~----~l 367 (595)
T 3f9v_A 296 SIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKG--STAA----GL 367 (595)
T ss_dssp TTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTC--STTT----TS
T ss_pred hhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCc--cccc----cc
Confidence 45788877766633221 1111111221122223599999999999999999999876443221000 0000 00
Q ss_pred hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHH
Q psy11254 252 MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331 (741)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~ 331 (741)
.+. ... ....+.+... .. .+..| +..|+||||+|.+. +..+..|.
T Consensus 368 ~~~--------~~~--------~~~~g~~~~~-~G----~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll 412 (595)
T 3f9v_A 368 TAA--------VVR--------EKGTGEYYLE-AG----ALVLA---DGGIAVIDEIDKMR-----------DEDRVAIH 412 (595)
T ss_dssp EEE--------CSS--------GGGTSSCSEE-EC----HHHHH---SSSEECCTTTTCCC-----------SHHHHHHH
T ss_pred cce--------eee--------cccccccccc-CC----eeEec---CCCcEEeehhhhCC-----------HhHhhhhH
Confidence 000 000 0000001000 01 22222 45799999998762 33456666
Q ss_pred HHHHhcc------CC--CCCCCeEEEEeeCCCC-------------CCCccccCCCccceee-ecCCCCHHHHHhc
Q psy11254 332 ELLNQMD------GF--DSLGQVKMIMATNRPD-------------TLDPALLRPGRLDRKI-EIPLPNEQARLAH 385 (741)
Q Consensus 332 ~lL~~l~------~~--~~~~~v~vI~at~~~~-------------~ld~al~r~gr~d~~i-~~~~p~~~~r~~i 385 (741)
+.+.+-. +. ....++.||+|||... .+++++++ |||..+ ..+.|+.+ ...+
T Consensus 413 ~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 413 EAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp HHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred HHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence 7665311 10 0124678999999876 78899998 998544 45566655 5443
No 212
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.03 E-value=7.5e-10 Score=118.85 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=58.6
Q ss_pred cchhhhhcchHHHHH----HHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 274 SAIVDKYIGESARLI----REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v----~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
...+..+|||+++++ +-++++|+..+|++|++|| |++++|+..+..+.+++..+.. .+.+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDE----------p~~~LD~~~~~~l~~~l~~~~~----~~~~vi 308 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE----------PTPYLDEERRRKLITIMERYLK----KIPQVI 308 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEEC----------CCTTCCHHHHHHHHHHHHHTGG----GSSEEE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHh----cCCEEE
Confidence 456788999999965 4477888888999999999 9999999999999999988753 245899
Q ss_pred EeeCCCCC
Q psy11254 350 MATNRPDT 357 (741)
Q Consensus 350 ~at~~~~~ 357 (741)
++||+++.
T Consensus 309 ~~sH~~~~ 316 (339)
T 3qkt_A 309 LVSHDEEL 316 (339)
T ss_dssp EEESCGGG
T ss_pred EEEChHHH
Confidence 99999653
No 213
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.02 E-value=9.6e-10 Score=130.89 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=73.5
Q ss_pred ccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCCe--EEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q psy11254 262 HHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQPC--IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 338 (741)
Q Consensus 262 ~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P~--ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~ 338 (741)
..+..+++... ....+.++|||++|++ .+++|+..+|. +|+||| |++++|+....++.+++..+.
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv--~LAraL~~~p~~~lllLDE----------PT~gLD~~~~~~l~~~L~~L~ 513 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRI--RLATQIGSGLTGVIYVLDE----------PTIGLHPRDTERLIKTLKKLR 513 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHH--HHHHHHHTTCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHTT
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHH--HHHHHHhhCCCCcEEEEEC----------CccCCCHHHHHHHHHHHHHHH
Confidence 34555666543 5778899999999999 99999998777 999999 999999999999999999886
Q ss_pred CCCCCCCeEEEEeeCCCCCCCccccCCCccceeeec
Q psy11254 339 GFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 339 ~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~ 374 (741)
. .+.+||++||+++.+. ..|+.+.+
T Consensus 514 ~----~G~TvivVtHd~~~~~-------~aD~ii~l 538 (916)
T 3pih_A 514 D----LGNTVIVVEHDEEVIR-------NADHIIDI 538 (916)
T ss_dssp T----TTCEEEEECCCHHHHH-------TCSEEEEE
T ss_pred h----cCCEEEEEeCCHHHHH-------hCCEEEEE
Confidence 4 4679999999987553 34666665
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.02 E-value=1.5e-10 Score=108.15 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCC
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 603 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~ 603 (741)
+.+++|+||||||||++|++++.... +++.++++++...+ ...+|..+. .++|||||+|.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~------- 88 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYS------- 88 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCC-------
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCC-------
Confidence 45699999999999999999999888 89989888765543 455666654 4699999999862
Q ss_pred CcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC
Q psy11254 604 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 639 (741)
Q Consensus 604 ~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~ 639 (741)
...+..+.++++... ..++.+|+|||.+
T Consensus 89 ----~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 89 ----RNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp ----HHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred ----HHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 234556666776643 2357799999875
No 215
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.01 E-value=1.2e-09 Score=142.44 Aligned_cols=190 Identities=19% Similarity=0.284 Sum_probs=118.7
Q ss_pred CCCCCceEEEcCCCCChHHHH-HHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHH---------------hcCC
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLA-RAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR---------------NHQP 584 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~-~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~---------------~~~p 584 (741)
+..+.+++|+||||||||++| ++++...+..++.++.+...+ ...+...+.... ...+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~ 1337 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKN 1337 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSC
T ss_pred HHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCce
Confidence 345678999999999999999 555554466677776654432 223333333320 1235
Q ss_pred eEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC-C-------CCeEEEEeeCCCC-----CCCccccCCCC
Q psy11254 585 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS-L-------GQVKMIMATNRPD-----TLDPALLRPGR 651 (741)
Q Consensus 585 ~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~-~-------~~v~vi~tTn~~~-----~ld~al~rpgR 651 (741)
+|+||||++.....+. + .....+.+.++++ ..|+.. . .++.+|+|||.|. .+|++++| |
T Consensus 1338 ~VlFiDEinmp~~d~y--g---~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--r 1409 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKY--G---SQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--H 1409 (2695)
T ss_dssp EEEEEETTTCSCCCSS--S---CCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred EEEEeccccccccccc--C---chhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--e
Confidence 7999999997543332 1 1245677778774 334321 1 2588999999994 89999999 9
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhh------cCCCcccHHHHH
Q psy11254 652 LDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLE------DTSPKQTVKEIL 725 (741)
Q Consensus 652 ~d~~i~~~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~------~~~~~~s~~~i~ 725 (741)
| .+|+++.|+.+++..|+..++...-. ... .+.. ...-...+++.+-..+.. ..+=..+..++-
T Consensus 1410 f-~vi~i~~P~~~~l~~I~~~il~~~l~---~~~-~v~~-----~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLs 1479 (2695)
T 4akg_A 1410 A-AILYLGYPSGKSLSQIYEIYYKAIFK---LVP-EFRS-----YTEPFARASVHLYNECKARYSTGLQSHYLFSPRELT 1479 (2695)
T ss_dssp E-EEEECCCCTTTHHHHHHHHHHHHHTT---SSG-GGGG-----GHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHH
T ss_pred e-eEEEeCCCCHHHHHHHHHHHHHHHhc---cCH-HHHH-----HHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHH
Confidence 9 88999999999999999988764321 111 1111 111122222222222211 123346788899
Q ss_pred HHHHHHHHH
Q psy11254 726 ALLLGVFMM 734 (741)
Q Consensus 726 ~~l~g~~~~ 734 (741)
.++-|++..
T Consensus 1480 rv~qGll~~ 1488 (2695)
T 4akg_A 1480 RLVRGVYTA 1488 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998865
No 216
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.01 E-value=2.3e-09 Score=116.26 Aligned_cols=222 Identities=15% Similarity=0.195 Sum_probs=125.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+|+++.|.+++++.+...+... ..+..++|+||+||||||++++++..+.+........+.. ...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~--~~~ 78 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDN 78 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS--SHH
T ss_pred CchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc--cHH
Confidence 35788999999999999887521 2334588999999999999999999887643221111000 011
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH----hcCCeEEEeccccccccccCCCCCCcc
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR----NHQPCIIFMDEIDAIGGRRFSEGTSAD 323 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~----~~~P~ILllDEid~l~~~~~~p~~~lD 323 (741)
+..+.... ..+...+.. .. .... ..++.++..+. ...+.|++|||+|.+ +
T Consensus 79 ~~~~~~~~-------~~~~~~~~~--~~--~~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~ 132 (373)
T 1jr3_A 79 CREIEQGR-------FVDLIEIDA--AS--RTKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------S 132 (373)
T ss_dssp HHHHHTSC-------CSSCEEEET--TC--SCCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------C
T ss_pred HHHHhccC-------CCceEEecc--cc--cCCH----HHHHHHHHHHhhccccCCeEEEEEECcchh-----------c
Confidence 11111000 000000000 00 0001 11233444443 245789999998876 2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhccccchhccC--CCcccCC
Q psy11254 324 REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAG--PIAKHGE 401 (741)
Q Consensus 324 ~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i~~~l~~~~~--~~~~~~~ 401 (741)
......|..++.+. ..++.+|++|+++..+.+.+.+ |+ ..+.+++|+..+...+ +..... .... ..
T Consensus 133 ~~~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~---l~~~~~~~~~~~-~~ 200 (373)
T 1jr3_A 133 RHSFNALLKTLEEP-----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQ---LEHILNEEHIAH-EP 200 (373)
T ss_dssp HHHHHHHHHHHHSC-----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH---HHHHHHHHTCCB-CH
T ss_pred HHHHHHHHHHHhcC-----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHH---HHHHHHHcCCCC-CH
Confidence 33445555555432 3478899999998888888776 44 5788999998877665 222111 1110 11
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHH
Q psy11254 402 IDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA 446 (741)
Q Consensus 402 ~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a 446 (741)
.....++..++| +...+.+++..+.... ...++.+++...
T Consensus 201 ~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 201 RALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 113556777766 4566667776654322 234666655444
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.01 E-value=7.8e-10 Score=114.33 Aligned_cols=137 Identities=23% Similarity=0.315 Sum_probs=88.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhhhccc-----cchHH-------HHHHHHHHHHHhcCCeEEE
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAIVDKY-----IGESA-------RLIREMFNYARNHQPCIIF 588 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l~~~~-----~g~s~-------~~i~~~f~~a~~~~p~Vl~ 588 (741)
+..++|+||||||||++|++++..+. .+++.++++.+.... +|... ......|..+ .+++||
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~ 105 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLF 105 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEE
Confidence 46799999999999999999999875 579999887653211 11100 0001123333 357999
Q ss_pred EcccccccCCCCCCCCcccHHHHHHHHHHHHHccC--C----CCCCCeEEEEeeCCC-------CCCCccccCCCCcc-e
Q psy11254 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG--F----DSLGQVKMIMATNRP-------DTLDPALLRPGRLD-R 654 (741)
Q Consensus 589 iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g--~----~~~~~v~vi~tTn~~-------~~ld~al~rpgR~d-~ 654 (741)
|||++.+. ...+..+.++++...- . ....++.+|+|||.+ ..+++++.+ ||+ .
T Consensus 106 lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~ 172 (265)
T 2bjv_A 106 LDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFD 172 (265)
T ss_dssp EESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSE
T ss_pred EechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCc
Confidence 99999863 2445666667765310 0 012357799999985 246788877 886 4
Q ss_pred EEEcCCCCH--HHHHHHHHHhhcC
Q psy11254 655 KIEIPLPNE--QARLEILKIHAGP 676 (741)
Q Consensus 655 ~i~~~~p~~--~~r~~i~~~~~~~ 676 (741)
.|.+|+++. ++...+++.++..
T Consensus 173 ~i~lp~L~~R~~di~~l~~~~l~~ 196 (265)
T 2bjv_A 173 VVQLPPLRERESDIMLMAEYFAIQ 196 (265)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHH
T ss_pred EEeCCChhhhhHHHHHHHHHHHHH
Confidence 677777765 5666676666543
No 218
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=1.8e-09 Score=116.43 Aligned_cols=126 Identities=20% Similarity=0.357 Sum_probs=86.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHh-Ccc----------------------------EEEEechhhhccccchHHHHHHHHHH
Q psy11254 527 CLLYGPPGTGKTLLARAVASQL-DAN----------------------------FLKVVSSAIVDKYIGESARLIREMFN 577 (741)
Q Consensus 527 ~ll~G~~G~GKt~l~~~~a~~~-~~~----------------------------~~~v~~~~l~~~~~g~s~~~i~~~f~ 577 (741)
++|+||||+||||+++++++.+ ++. ++.+..++. + ... ...++..++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM-G--NND-RIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------CC-HHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc-C--Ccc-hHHHHHHHH
Confidence 8999999999999999999964 221 122222111 0 001 112444444
Q ss_pred HHH--------------hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 578 YAR--------------NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 643 (741)
Q Consensus 578 ~a~--------------~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld 643 (741)
.+. ...|.|++|||++.+ +....+.+..+|++.. .++.+|++||.++.+.
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----------~~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----------TKDAQAALRRTMEKYS-----KNIRLIMVCDSMSPII 178 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSS-----------CHHHHHHHHHHHHHST-----TTEEEEEEESCSCSSC
T ss_pred HHHHhccccccccccccCCCCeEEEEeCcccc-----------CHHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHH
Confidence 332 225779999999984 2334555666666532 3578999999999999
Q ss_pred ccccCCCCcceEEEcCCCCHHHHHHHHHHhhc
Q psy11254 644 PALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 644 ~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~ 675 (741)
+++.+ |+ ..+.|++|+.+++.++++..+.
T Consensus 179 ~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 179 APIKS--QC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHh--hc-eEEecCCcCHHHHHHHHHHHHH
Confidence 99987 88 8899999999999999998765
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.00 E-value=2.6e-10 Score=106.74 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 599 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r 599 (741)
.+..++|+||||||||++|++++... +.+|+ ++++.+... ......|..+. .++|||||+|.+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~--- 89 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLT--- 89 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCC---
Confidence 34569999999999999999999987 66888 988876554 12344565553 3699999999862
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCC
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRP 639 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~ 639 (741)
...+..+..+|.. ...++.+|+|||.+
T Consensus 90 --------~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 90 --------REQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --------HHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --------HHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 2344555555522 22356789999974
No 220
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.00 E-value=1.3e-09 Score=115.45 Aligned_cols=150 Identities=26% Similarity=0.307 Sum_probs=94.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC-----ceeeecccc
Q psy11254 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLF 241 (741)
Q Consensus 167 ~~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~ 241 (741)
..+|+++.|.+++++.+.+.+.. + ..+ +++|+||||||||+++++++..+... +..+.....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 35688999999999998887642 1 122 38999999999999999999986321 222221000
Q ss_pred cchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHH-HH-hcCCeEEEeccccccccccCCCC
Q psy11254 242 VTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNY-AR-NHQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~-A~-~~~P~ILllDEid~l~~~~~~p~ 319 (741)
.+ .......+...... .. ..++.|++|||+|.+..
T Consensus 80 -----------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------ 116 (319)
T 2chq_A 80 -----------------------------------RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------ 116 (319)
T ss_dssp -----------------------------------TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------
T ss_pred -----------------------------------cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------
Confidence 00 00001111111100 11 14588999999988732
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
..... ++..++.. ..++.+|++||.++.+.+.+.+ |+. .+.+++|+..+...+
T Consensus 117 -----~~~~~---L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~ 169 (319)
T 2chq_A 117 -----DAQAA---LRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKR 169 (319)
T ss_dssp -----HHHHT---TGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHH
T ss_pred -----HHHHH---HHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHH
Confidence 22232 33333331 3578899999999888888887 554 789999998887665
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.00 E-value=3.2e-10 Score=119.81 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhcc-------------ccchHHHHHHHHHHHHHhcCCeE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDK-------------YIGESARLIREMFNYARNHQPCI 586 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~-------------~~g~s~~~i~~~f~~a~~~~p~V 586 (741)
.+..++|+||||||||++|++++... +.+|+.++++.+... |.|... .....|..|. .++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~ 99 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD---GGT 99 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT---TSE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC---CCE
Confidence 34679999999999999999999976 567889987765321 111111 1123444443 469
Q ss_pred EEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCC------CCCCCeEEEEeeCCC-------CCCCccccCCCCcc
Q psy11254 587 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF------DSLGQVKMIMATNRP-------DTLDPALLRPGRLD 653 (741)
Q Consensus 587 l~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~------~~~~~v~vi~tTn~~-------~~ld~al~rpgR~d 653 (741)
|||||++.+. ...+..+..+|+...-. ....++.||+|||.+ ..+++.+.. ||+
T Consensus 100 L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~ 166 (304)
T 1ojl_A 100 LFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN 166 (304)
T ss_dssp EEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS
T ss_pred EEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC
Confidence 9999999863 23455566666643210 012357899999986 235555655 774
Q ss_pred -eEEEcCCCC--HHHHHHHHHHhhcCccc-----cCCCCccccccccccc
Q psy11254 654 -RKIEIPLPN--EQARLEILKIHAGPIAK-----HGEIGDAATKWVLPFT 695 (741)
Q Consensus 654 -~~i~~~~p~--~~~r~~i~~~~~~~~~~-----~~~~~~~a~~~l~~~~ 695 (741)
..|.+|++. .++...+++.++..... ...+++.+...+....
T Consensus 167 ~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 167 VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 346677766 45666677776654321 1346666655554443
No 222
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.99 E-value=1.2e-09 Score=116.54 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=57.4
Q ss_pred cchhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 274 SAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
...+..+|||+++++ .+++|++ ..|.+|+||| |++++|+.....+.+++..+.. +.++|
T Consensus 214 ~~~~~~lS~Gq~q~v--~ia~~l~~~~~~~~~~lllDE----------p~~~LD~~~~~~l~~~l~~~~~-----~~~vi 276 (322)
T 1e69_A 214 DQKLSLLSGGEKALV--GLALLFALMEIKPSPFYVLDE----------VDSPLDDYNAERFKRLLKENSK-----HTQFI 276 (322)
T ss_dssp CCBGGGSCHHHHHHH--HHHHHHHHTTTSCCSEEEEES----------CCSSCCHHHHHHHHHHHHHHTT-----TSEEE
T ss_pred cCchhhCCHHHHHHH--HHHHHHHHhccCCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHhcC-----CCeEE
Confidence 345688999999999 8888876 5789999999 9999999999999999988742 46899
Q ss_pred EeeCCCCCC
Q psy11254 350 MATNRPDTL 358 (741)
Q Consensus 350 ~at~~~~~l 358 (741)
++||+++.+
T Consensus 277 ~~tH~~~~~ 285 (322)
T 1e69_A 277 VITHNKIVM 285 (322)
T ss_dssp EECCCTTGG
T ss_pred EEECCHHHH
Confidence 999997543
No 223
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.99 E-value=4.5e-10 Score=133.91 Aligned_cols=136 Identities=10% Similarity=0.033 Sum_probs=83.8
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-ceeeecccccchhhHHHHHhhhh-hhhccccccccccc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-FLKVVSSLFVTSKEDMAILMGNQ-LKRRSTHHLEKTYF 269 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 269 (741)
..+..++++.++.| ++|+||||+||||++|++++..-.. .+.... ... ........+..++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp--------------a~~~~i~~~d~i~~~ig~ 725 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP--------------AEEATIGIVDGIFTRMGA 725 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS--------------SSEEEEECCSEEEEEC--
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc--------------chhhhhhHHHHHHHhCCh
Confidence 44667788888877 7899999999999999998643100 000000 000 00011223333444
Q ss_pred CCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHH-HHHHhccCCCCCCCeEE
Q psy11254 270 PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQMDGFDSLGQVKM 348 (741)
Q Consensus 270 ~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~-~lL~~l~~~~~~~~v~v 348 (741)
........+.+++++.+.. .+..+ ..+|++||||| |++++|+.....+. .++..+.. ..+.++
T Consensus 726 ~d~l~~~~stfs~em~~~~--~il~~-a~~p~LlLLDE----------P~~GlD~~~~~~i~~~il~~L~~---~~g~tv 789 (918)
T 3thx_B 726 ADNIYKGRSTFMEELTDTA--EIIRK-ATSQSLVILDE----------LGRGTSTHDGIAIAYATLEYFIR---DVKSLT 789 (918)
T ss_dssp --------CCHHHHHHHHH--HHHHH-CCTTCEEEEES----------TTTTSCHHHHHHHHHHHHHHHHH---TTCCEE
T ss_pred HHHHHHhHHHhhHHHHHHH--HHHHh-ccCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHHH---hcCCeE
Confidence 4444455677888887765 44444 68999999999 99999998777665 67766632 246799
Q ss_pred EEeeCCCCCCC
Q psy11254 349 IMATNRPDTLD 359 (741)
Q Consensus 349 I~at~~~~~ld 359 (741)
|++||+.+...
T Consensus 790 l~vTH~~el~~ 800 (918)
T 3thx_B 790 LFVTHYPPVCE 800 (918)
T ss_dssp EEECSCGGGGG
T ss_pred EEEeCcHHHHH
Confidence 99999987654
No 224
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=4.7e-09 Score=111.24 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=97.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC-----ceeeeccccc
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLFV 242 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~~ 242 (741)
.+++++.|.+.+++.+.+.+... .++. ++|+||+|+|||++++.++..+... +..+..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---- 80 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG------------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---- 80 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC------------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT----
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC------------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC----
Confidence 45788999999999999887521 2233 8999999999999999999886321 111110
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH-------hcCCeEEEecccccccccc
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR-------NHQPCIIFMDEIDAIGGRR 315 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~-------~~~P~ILllDEid~l~~~~ 315 (741)
+. ..+ ...++..+.... ..++.|++|||+|.+..
T Consensus 81 -------------------------------~~----~~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-- 121 (323)
T 1sxj_B 81 -------------------------------SD----DRG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-- 121 (323)
T ss_dssp -------------------------------TS----CCS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--
T ss_pred -------------------------------cc----ccC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--
Confidence 00 001 122333333332 23488999999987632
Q ss_pred CCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 316 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 316 ~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
.....|..++... ..++.+|++|++++.+.+.+.+ |+. .+.+++|+..+...+
T Consensus 122 ---------~~~~~L~~~le~~-----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 122 ---------GAQQALRRTMELY-----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKR 174 (323)
T ss_dssp ---------HHHHTTHHHHHHT-----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHH
T ss_pred ---------HHHHHHHHHHhcc-----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHH
Confidence 2345556666543 2467899999999888888877 443 789999998887765
No 225
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=7.6e-09 Score=109.80 Aligned_cols=148 Identities=23% Similarity=0.319 Sum_probs=95.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC-----ceeeeccccc
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-----FLKVVSSLFV 242 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~-----~~~v~~~~~~ 242 (741)
.+|+++.|.+++++.+...+... .+ .+++|+||||+||||++++++..+... +..+...
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~--- 85 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG------------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--- 85 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT------------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT---
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC------------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc---
Confidence 46888999999999999877531 11 248999999999999999999886432 1111110
Q ss_pred chhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHH--Hh-cCCeEEEeccccccccccCCCC
Q psy11254 243 TSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA--RN-HQPCIIFMDEIDAIGGRRFSEG 319 (741)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A--~~-~~P~ILllDEid~l~~~~~~p~ 319 (741)
...+ .......+.. +... .. .++.|++|||+|.+.
T Consensus 86 --------------------------------~~~~--~~~~~~~~~~-~~~~~~~~~~~~~vliiDe~~~l~------- 123 (327)
T 1iqp_A 86 --------------------------------DERG--INVIREKVKE-FARTKPIGGASFKIIFLDEADALT------- 123 (327)
T ss_dssp --------------------------------CHHH--HHTTHHHHHH-HHHSCCGGGCSCEEEEEETGGGSC-------
T ss_pred --------------------------------ccCc--hHHHHHHHHH-HHhhCCcCCCCCeEEEEeCCCcCC-------
Confidence 0000 0000111111 1111 11 468899999998762
Q ss_pred CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 320 ~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
...+..|..++... ..++.+|++|+.++.+.+.+.+ |+. .+.+++++..+...+
T Consensus 124 ----~~~~~~L~~~le~~-----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~ 177 (327)
T 1iqp_A 124 ----QDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKR 177 (327)
T ss_dssp ----HHHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHH
T ss_pred ----HHHHHHHHHHHHhc-----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHH
Confidence 23455666666543 2467899999998888888776 554 688988887776654
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2e-09 Score=115.50 Aligned_cols=140 Identities=23% Similarity=0.289 Sum_probs=93.2
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhCc-----cEEEEechhhhccccchHHHHHHHHHHHHH-h-----cCCeEEEEccccc
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSAIVDKYIGESARLIREMFNYAR-N-----HQPCIIFMDEIDA 594 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~~-----~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~-~-----~~p~Vl~iDE~d~ 594 (741)
+++|+|||||||||+++++|+.+.. .+..++.++.. | ...++..+.... . ..+.|+++||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 3899999999999999999998743 35555554421 1 122333332222 1 2368999999998
Q ss_pred ccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhh
Q psy11254 595 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674 (741)
Q Consensus 595 ~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~ 674 (741)
+. ......+..++++. ...+.+|++||.+..+.+++.+ |+. .+.|++++.++..+++...+
T Consensus 122 l~-----------~~~~~~L~~~le~~-----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 122 MT-----------NAAQNALRRVIERY-----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp SC-----------HHHHHHHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHhcC-----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 62 12234455555542 2457788899999999999988 886 78999999999988888766
Q ss_pred cCccccCCCCcccccccc
Q psy11254 675 GPIAKHGEIGDAATKWVL 692 (741)
Q Consensus 675 ~~~~~~~~~~~~a~~~l~ 692 (741)
... +..+++.+...+.
T Consensus 183 ~~~--~~~i~~~~~~~i~ 198 (340)
T 1sxj_C 183 VHE--KLKLSPNAEKALI 198 (340)
T ss_dssp HTT--TCCBCHHHHHHHH
T ss_pred HHc--CCCCCHHHHHHHH
Confidence 421 2245555544443
No 227
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.96 E-value=4.5e-10 Score=129.97 Aligned_cols=140 Identities=21% Similarity=0.347 Sum_probs=80.3
Q ss_pred hcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc----CC------------CCCCCeEEEEeeCCC--CCC
Q psy11254 297 NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD----GF------------DSLGQVKMIMATNRP--DTL 358 (741)
Q Consensus 297 ~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~----~~------------~~~~~v~vI~at~~~--~~l 358 (741)
..++.+|||||++.+ ++..+..|...|..-. +. .-..++.||++||.. +.+
T Consensus 199 ~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 199 RAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp HTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred ecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 347789999998765 4566777777776321 10 001367899999976 568
Q ss_pred CccccCCCccc---eeeecCC--CC-HHHHHhccccchhccCCCcccCCCCH---HHHHHhc---CC------CCHHHHH
Q psy11254 359 DPALLRPGRLD---RKIEIPL--PN-EQARLAHTWPISIHAGPIAKHGEIDY---EAVVKLS---DS------FNGADLR 420 (741)
Q Consensus 359 d~al~r~gr~d---~~i~~~~--p~-~~~r~~i~~~l~~~~~~~~~~~~~~~---~~la~~t---~g------~~gadi~ 420 (741)
++++.+ ||+ ..+.++. ++ ......+...+............++. ..+.... .| .+.+++.
T Consensus 268 ~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~ 345 (604)
T 3k1j_A 268 HPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLG 345 (604)
T ss_dssp CHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHH
T ss_pred CHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHH
Confidence 888888 775 3444432 11 11122221111111100000012222 2233221 33 2578999
Q ss_pred HHHHHHHHHHHhhhccccchHhHHHHHHH
Q psy11254 421 NVCTEAGLFAIRSEREYVTQEDFMKAVRK 449 (741)
Q Consensus 421 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 449 (741)
++++.|...+....+..++.+++..+++.
T Consensus 346 ~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 346 GIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 99999888777777788999998888753
No 228
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=2.1e-09 Score=113.29 Aligned_cols=124 Identities=11% Similarity=0.174 Sum_probs=94.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh------CccEEEEechhhhccccchHHHHHHHHHHHHHhcC----CeEEEEccccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ----PCIIFMDEIDA 594 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~------~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~----p~Vl~iDE~d~ 594 (741)
..++|+||||+|||++|.++|..+ .++++.+++++ ... +...++.+++.+...+ ..|+||||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~--~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCC--CHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 368999999999999999999864 45677776542 112 2345778888776432 46999999998
Q ss_pred ccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCCHHHHHHHHHHhh
Q psy11254 595 IGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHA 674 (741)
Q Consensus 595 ~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~ 674 (741)
+. ....+.||..|+ ++.+++++|++||.++.+.|++.+ | +++|++|+.++..+.++..+
T Consensus 94 lt--------------~~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 94 MT--------------QQAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp BC--------------HHHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hC--------------HHHHHHHHHHHh--CCCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 62 123455666666 344578889999999999999988 8 89999999999999998776
No 229
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.93 E-value=1.2e-08 Score=121.28 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=77.6
Q ss_pred hhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC--CeEEEeccccccccccCCCCCCccHHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ--PCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~--P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~ 332 (741)
+.+++ ..+..+|+.. ..+..+.++|||+.|++ .++.++..+ |.+|+||| |++++|+....+|.+
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV--~LA~aL~~~~~~~llILDE----------PTagLdp~~~~~L~~ 564 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRI--RLATQIGSGLVGVLYVLDE----------PSIGLHQRDNRRLIE 564 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHH--HHHHHHTTCCCSCEEEEEC----------TTTTCCHHHHHHHHH
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHH--HHHHHHhhCCCCcEEEEeC----------cccCCCHHHHHHHHH
Confidence 34444 3466677764 36788999999999999 999999988 58999999 999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 333 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 333 lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
+|..+.. .+.+||+++|+++.+. ..|+.+.+.
T Consensus 565 ~L~~Lr~----~G~TVIvVeHdl~~i~-------~ADrIi~Lg 596 (993)
T 2ygr_A 565 TLTRLRD----LGNTLIVVEHDEDTIE-------HADWIVDIG 596 (993)
T ss_dssp HHHHHHH----TTCEEEEECCCHHHHH-------TCSEEEEEC
T ss_pred HHHHHHH----cCCEEEEECCCHHHHH-------hCCEEEEec
Confidence 9999864 4679999999987653 346666664
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.92 E-value=4.8e-10 Score=119.64 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=76.0
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCC
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 272 (741)
.+++++++.++.| ++++||||||||||+++|+|.+.+..+.+........ .+...
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~-----------------------~~~~~ 215 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI-----------------------VFKHH 215 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC-----------------------CCSSC
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc-----------------------ccccc
Confidence 3566666666666 8899999999999999999999888777754211000 00000
Q ss_pred ccchhhhhc--chHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 273 SSAIVDKYI--GESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 273 ~~~~~~~~~--G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
.+.+ .+. |++.+++ ++++|+..+|++|++|| |++. + +.+++..+.. ++.++|+
T Consensus 216 -~~~i-~~~~ggg~~~r~--~la~aL~~~p~ilildE----------~~~~---e----~~~~l~~~~~----g~~tvi~ 270 (330)
T 2pt7_A 216 -KNYT-QLFFGGNITSAD--CLKSCLRMRPDRIILGE----------LRSS---E----AYDFYNVLCS----GHKGTLT 270 (330)
T ss_dssp -SSEE-EEECBTTBCHHH--HHHHHTTSCCSEEEECC----------CCST---H----HHHHHHHHHT----TCCCEEE
T ss_pred -hhEE-EEEeCCChhHHH--HHHHHhhhCCCEEEEcC----------CChH---H----HHHHHHHHhc----CCCEEEE
Confidence 0000 122 6666665 99999999999999999 6651 2 3445555542 3456899
Q ss_pred eeCCCC
Q psy11254 351 ATNRPD 356 (741)
Q Consensus 351 at~~~~ 356 (741)
++|+.+
T Consensus 271 t~H~~~ 276 (330)
T 2pt7_A 271 TLHAGS 276 (330)
T ss_dssp EEECSS
T ss_pred EEcccH
Confidence 999876
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=5.7e-09 Score=112.02 Aligned_cols=150 Identities=25% Similarity=0.366 Sum_probs=94.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhH
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED 247 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~ 247 (741)
.+++++.|.+.+++.|...+.- + .++. ++|+|||||||||+++++|+.+.+..+....
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~--------- 79 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMV--------- 79 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHE---------
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceE---------
Confidence 4688899999999998887752 1 2233 8999999999999999999987543211100
Q ss_pred HHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHH------hcCCeEEEeccccccccccCCCCCC
Q psy11254 248 MAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYAR------NHQPCIIFMDEIDAIGGRRFSEGTS 321 (741)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~------~~~P~ILllDEid~l~~~~~~p~~~ 321 (741)
.+ +.. +. ..| ...++..+.... ...+.|+++||+|.+.
T Consensus 80 ----------------~~---~~~--~~----~~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------- 123 (340)
T 1sxj_C 80 ----------------LE---LNA--SD----DRG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------- 123 (340)
T ss_dssp ----------------EE---ECT--TS----CCS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------
T ss_pred ----------------EE---EcC--cc----ccc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------
Confidence 00 000 00 001 112222222211 1347899999998773
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 322 ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 322 lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
...+..|..++.... ..+.+|++||.+..+.+.+.. |+. .+.++.++..+....
T Consensus 124 --~~~~~~L~~~le~~~-----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~ 177 (340)
T 1sxj_C 124 --NAAQNALRRVIERYT-----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERR 177 (340)
T ss_dssp --HHHHHHHHHHHHHTT-----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHH
T ss_pred --HHHHHHHHHHHhcCC-----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHH
Confidence 234555666665543 456788999999888888877 554 677877776655443
No 232
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.88 E-value=1.8e-09 Score=104.69 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=69.0
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHh----CccEEEEechhhhccccchHHH-HHHHHHHHHHhcCCeEEEEccc
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSSAIVDKYIGESAR-LIREMFNYARNHQPCIIFMDEI 592 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~----~~~~~~v~~~~l~~~~~g~s~~-~i~~~f~~a~~~~p~Vl~iDE~ 592 (741)
++.+..+.+++|+|||||||||+++++++.+ +..++.++..++...+...... ....+++. ...|.+|+|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCC
Confidence 3445567889999999999999999999987 4456666776665443211100 00122222 235789999999
Q ss_pred ccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCC
Q psy11254 593 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 593 d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ 641 (741)
+.. ..+......+.++++.... .+..+|+|||.+..
T Consensus 110 ~~~---------~~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 110 GSE---------RLSDWQRELISYIITYRYN----NLKSTIITTNYSLQ 145 (180)
T ss_dssp SSS---------CCCHHHHHHHHHHHHHHHH----TTCEEEEECCCCSC
T ss_pred CCC---------cCCHHHHHHHHHHHHHHHH----cCCCEEEEcCCChh
Confidence 853 1344556677777776521 13458888988643
No 233
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.88 E-value=1.7e-09 Score=129.36 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=73.9
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc-----CCCceeeecccccchhhHHHHHhhhhhhhcccccccccc
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (741)
+..++++..+.| ++|+||||+||||++|+++... +.... -... ........+..++
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp-a~~~----------------~~~~~d~i~~~ig 713 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP-CESA----------------EVSIVDCILARVG 713 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS-EEEE----------------EEECCSEEEEECC
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc-cccc----------------cchHHHHHHHhcC
Confidence 344667777777 7899999999999999995432 11000 0000 0001122333333
Q ss_pred cCCCccchhhhhcchHHHHHHHHHHHHH--hcCCeEEEeccccccccccCCCCCCccHHHHHHH-HHHHHhccCCCCCCC
Q psy11254 269 FPFYSSAIVDKYIGESARLIREMFNYAR--NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQMDGFDSLGQ 345 (741)
Q Consensus 269 ~~~~~~~~~~~~~G~~~~~v~~~~~~A~--~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l-~~lL~~l~~~~~~~~ 345 (741)
.... +....++.+.++. .++.++ ..+|++|+||| |++++|+.....+ ..++..+.. ..+
T Consensus 714 ~~d~---l~~~lStf~~e~~--~~a~il~~a~~~sLlLLDE----------p~~GlD~~~~~~i~~~il~~l~~---~~g 775 (934)
T 3thx_A 714 AGDS---QLKGVSTFMAEML--ETASILRSATKDSLIIIDE----------LGRGTSTYDGFGLAWAISEYIAT---KIG 775 (934)
T ss_dssp ------------CHHHHHHH--HHHHHHHHCCTTCEEEEES----------CSCSSCHHHHHHHHHHHHHHHHH---TTC
T ss_pred chhh---HHHhHhhhHHHHH--HHHHHHHhccCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHHh---cCC
Confidence 3322 2233444444443 233333 68999999999 9999999766665 566666643 236
Q ss_pred eEEEEeeCCCCCC
Q psy11254 346 VKMIMATNRPDTL 358 (741)
Q Consensus 346 v~vI~at~~~~~l 358 (741)
.++|++||+.+..
T Consensus 776 ~~vl~aTH~~el~ 788 (934)
T 3thx_A 776 AFCMFATHFHELT 788 (934)
T ss_dssp CEEEEEESCGGGG
T ss_pred CEEEEEcCcHHHH
Confidence 7999999997654
No 234
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.85 E-value=5.5e-09 Score=88.10 Aligned_cols=78 Identities=40% Similarity=0.608 Sum_probs=71.0
Q ss_pred ecCCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 373 EIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 373 ~~~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
.-.+|+..+|.+| ++.+...+....++|+..+++.|+||+|+||.++|++|++.++++....++.+||..+++++.+
T Consensus 7 ~~~~Pd~~~R~~I---L~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 7 HHSHPNEEARLDI---LKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp CCCCCCHHHHHHH---HHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHH---HHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Confidence 3468999999999 8888888887789999999999999999999999999999999998889999999999988765
Q ss_pred c
Q psy11254 453 N 453 (741)
Q Consensus 453 ~ 453 (741)
.
T Consensus 84 ~ 84 (86)
T 2krk_A 84 K 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.84 E-value=3.5e-09 Score=109.10 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCC-ceeeecccccchhhHHHHHhhhhhhhcccccccccccCC
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDAN-FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (741)
+++++++ +++| ++|+||||||||||+++|++.+.+. .+.+...... +.+.... .. ....
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-----i~~~~~~----~~-~~v~------ 76 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-----IEYVFKH----KK-SIVN------ 76 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-----CCSCCCC----SS-SEEE------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-----ceeecCC----cc-eeee------
Confidence 4677777 4455 8899999999999999999998775 5665432110 0000000 00 0000
Q ss_pred CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEe
Q psy11254 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 351 (741)
Q Consensus 272 ~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~a 351 (741)
.. ..|-....++..+++|+..+|++|++|| |+ |++....+. .... .+.+|+++
T Consensus 77 --q~----~~gl~~~~l~~~la~aL~~~p~illlDE----------p~---D~~~~~~~l---~~~~-----~g~~vl~t 129 (261)
T 2eyu_A 77 --QR----EVGEDTKSFADALRAALREDPDVIFVGE----------MR---DLETVETAL---RAAE-----TGHLVFGT 129 (261)
T ss_dssp --EE----EBTTTBSCHHHHHHHHHHHCCSEEEESC----------CC---SHHHHHHHH---HHHH-----TTCEEEEE
T ss_pred --HH----HhCCCHHHHHHHHHHHHhhCCCEEEeCC----------CC---CHHHHHHHH---HHHc-----cCCEEEEE
Confidence 00 0000001124589999999999999999 76 666544333 3222 24589999
Q ss_pred eCCCC
Q psy11254 352 TNRPD 356 (741)
Q Consensus 352 t~~~~ 356 (741)
+|+.+
T Consensus 130 ~H~~~ 134 (261)
T 2eyu_A 130 LHTNT 134 (261)
T ss_dssp ECCSS
T ss_pred eCcch
Confidence 99876
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.84 E-value=3e-09 Score=99.16 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=71.6
Q ss_pred cccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHH
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAIL 251 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~ 251 (741)
++.|-+..++++.+.+.... ..+.+++|+||||||||++|++|+.... ++..+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~------------- 59 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPAR------------- 59 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSS-------------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEech-------------
Confidence 46678888888888775311 2235699999999999999999998765 4444432
Q ss_pred hhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHH
Q psy11254 252 MGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331 (741)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~ 331 (741)
..+...+ ....+..| ++.+|||||+|.+ +...+..+.
T Consensus 60 ----------------------~~~~~~~-------~~~~~~~a---~~~~l~lDei~~l-----------~~~~q~~Ll 96 (143)
T 3co5_A 60 ----------------------VEYLIDM-------PMELLQKA---EGGVLYVGDIAQY-----------SRNIQTGIT 96 (143)
T ss_dssp ----------------------TTHHHHC-------HHHHHHHT---TTSEEEEEECTTC-----------CHHHHHHHH
T ss_pred ----------------------hhCChHh-------hhhHHHhC---CCCeEEEeChHHC-----------CHHHHHHHH
Confidence 1111111 12244443 3579999998865 344566677
Q ss_pred HHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 332 ELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 332 ~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
.++.... ..++.+|++||..
T Consensus 97 ~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 97 FIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHT----TTTCEEEEEEEEC
T ss_pred HHHHhCC----CCCEEEEEecCCC
Confidence 7776543 2467899998854
No 237
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.84 E-value=8.8e-09 Score=96.21 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred cccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc---CCCceeeecccccchhhHH
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l---~~~~~~v~~~~~~~~~~~~ 248 (741)
++.|-....+++.+.+..- ...+..++|+||||||||++|++|+... +.++. +.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~------- 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP------- 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT-------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC-------
Confidence 3567777777777766531 1223459999999999999999999876 34455 443111
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~ 328 (741)
... . .....+..| ++++|||||+|.+ ++..+.
T Consensus 63 ----------------------------~~~--~----~~~~~~~~a---~~g~l~ldei~~l-----------~~~~q~ 94 (145)
T 3n70_A 63 ----------------------------DNA--P----QLNDFIALA---QGGTLVLSHPEHL-----------TREQQY 94 (145)
T ss_dssp ----------------------------TTS--S----CHHHHHHHH---TTSCEEEECGGGS-----------CHHHHH
T ss_pred ----------------------------Ccc--h----hhhcHHHHc---CCcEEEEcChHHC-----------CHHHHH
Confidence 000 0 111234443 4579999999876 345566
Q ss_pred HHHHHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 329 TLMELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 329 ~l~~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
.+..++... ..++.+|++||..
T Consensus 95 ~Ll~~l~~~-----~~~~~~I~~t~~~ 116 (145)
T 3n70_A 95 HLVQLQSQE-----HRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHSS-----SCSSCEEEEESSC
T ss_pred HHHHHHhhc-----CCCEEEEEECCcC
Confidence 677766322 2457789999853
No 238
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.83 E-value=7.5e-09 Score=85.77 Aligned_cols=75 Identities=43% Similarity=0.667 Sum_probs=69.4
Q ss_pred CCCCHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcc
Q psy11254 375 PLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSD 452 (741)
Q Consensus 375 ~~p~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~ 452 (741)
|+|+..+|.+| ++.|...+....++++..++..|+||+|+||.++|++|++.++++....++.+||..+++++..
T Consensus 1 plPd~~~R~~I---l~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDI---LKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHH---HHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHH---HHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 68999999999 8888888887789999999999999999999999999999999999999999999999987754
No 239
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.82 E-value=7.3e-09 Score=106.98 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC---CCceeeec
Q psy11254 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVS 238 (741)
Q Consensus 168 ~~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~ 238 (741)
.+|+++.|.+..++++.+.+.... ..+.+++|+||||||||+++++|+.... .++..+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 467888999999998887765321 1235699999999999999999998875 34555554
No 240
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.81 E-value=1.1e-10 Score=127.50 Aligned_cols=136 Identities=10% Similarity=0.003 Sum_probs=84.4
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccc-------hhhH-----HHHHhhh-hhhhcccccccccccCCCcc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT-------SKED-----MAILMGN-QLKRRSTHHLEKTYFPFYSS 274 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~-------~~~~-----~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 274 (741)
++|+||||+|||||+++|+|...+..+.+....... .... +....+- ....++...++.+++....
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~- 150 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD- 150 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS-
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC-
Confidence 679999999999999999998776655543211000 0000 0000000 0012233334444433221
Q ss_pred chhhhhcch--HHHHHHHHHHHHHhc----------CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc----
Q psy11254 275 AIVDKYIGE--SARLIREMFNYARNH----------QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD---- 338 (741)
Q Consensus 275 ~~~~~~~G~--~~~~v~~~~~~A~~~----------~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~---- 338 (741)
..+. ++|+ +++++ .+++|+.. +|+++++|| |++++|+..+..+.+++..+.
T Consensus 151 ~~~~-lS~G~~~kqrv--~la~aL~~~~~p~~lV~tkpdlllLDE----------PtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 151 FFII-ISATRFKKNDI--DIAKAISMMKKEFYFVRTKVDSDITNE----------ADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp EEEE-EESSCCCHHHH--HHHHHHHHTTCEEEEEECCHHHHHHHH----------HTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEE-eCCCCccHHHH--HHHHHHHhcCCCeEEEEecCcccccCc----------ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 2222 7888 88877 89999988 999999999 999999988888888887762
Q ss_pred -CCCCCCCeEEEEeeCCCCC
Q psy11254 339 -GFDSLGQVKMIMATNRPDT 357 (741)
Q Consensus 339 -~~~~~~~v~vI~at~~~~~ 357 (741)
........+|+++||..+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTS
T ss_pred HhcCCCCCcEEEEecCcCCc
Confidence 1100123467788998776
No 241
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.81 E-value=4.9e-09 Score=119.29 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=82.2
Q ss_pred CCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhh
Q psy11254 202 ITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK 279 (741)
Q Consensus 202 l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (741)
..+++| ++|+||||||||||++.+++...+.-..+...........+..... ........ +...++.......+..
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~-~~g~~~~~-~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAY-SWGMDFEE-MERQNLLKIVCAYPES 353 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHH-TTSCCHHH-HHHTTSEEECCCCGGG
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHH-HcCCCHHH-HHhCCCEEEEEecccc
Confidence 356667 7899999999999999999987654222211111111111111100 00000000 0011111112334567
Q ss_pred hcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHH-----HHHHHHHHHHhccCCCCCCCeEEEEeeCC
Q psy11254 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE-----IQRTLMELLNQMDGFDSLGQVKMIMATNR 354 (741)
Q Consensus 280 ~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~-----~~~~l~~lL~~l~~~~~~~~v~vI~at~~ 354 (741)
++|++.+++ ++++++..+|++|+|| |++++|.. .+..+.+++..+.. .++++|++||+
T Consensus 354 LS~g~~q~~--~~a~~l~~~p~llilD-----------p~~~Ld~~~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 354 AGLEDHLQI--IKSEINDFKPARIAID-----------SLSALARGVSNNAFRQFVIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp SCHHHHHHH--HHHHHHTTCCSEEEEE-----------CHHHHTSSSCHHHHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCHHHHHHH--HHHHHHhhCCCEEEEc-----------ChHHHHhhCChHHHHHHHHHHHHHHHh----CCCEEEEEECc
Confidence 899988877 9999999999999999 33344443 77788888887764 47899999999
Q ss_pred C
Q psy11254 355 P 355 (741)
Q Consensus 355 ~ 355 (741)
.
T Consensus 417 ~ 417 (525)
T 1tf7_A 417 D 417 (525)
T ss_dssp S
T ss_pred c
Confidence 8
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.80 E-value=4.5e-09 Score=107.17 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCeEEEeccccccccccCCCCCCcc-HHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD-REIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 288 v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD-~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
.......+...+|.+|+|||+-+..... .| +..+..+.+++..+.. .+++||++||+.+..
T Consensus 124 ~~~~~~~l~~~~p~~lilDep~~~ld~~------~d~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 124 LRYIYRVVKAINAKRLVIDSIPSIALRL------EEERKIREVLLKLNTILLE----MGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHHS------SSGGGHHHHHHHHHHHHHH----HCCEEEEEECCC---
T ss_pred HHHHHHHHHhhCCCEEEEccHHHHHhhc------CCHHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCC
Confidence 3344555556899999999944333211 02 4455567788877753 467999999998876
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.78 E-value=1.3e-08 Score=107.00 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--chh--hHHHH
Q psy11254 177 SEQIRELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--TSK--EDMAI 250 (741)
Q Consensus 177 ~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--~~~--~~~~~ 250 (741)
+.+++.+.+.+.--+........+++..++| ++|+|||||||||+++.|||.+.+..+++...... ... .....
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~ 149 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 149 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHH
Confidence 3344444444433232222123567777777 77999999999999999999987765555432110 000 00000
Q ss_pred H---------------------hhh-----hhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe--E
Q psy11254 251 L---------------------MGN-----QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC--I 302 (741)
Q Consensus 251 ~---------------------~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~--I 302 (741)
. ..+ .........++..++.......+.+++ + .+..+++|+..+|. +
T Consensus 150 ~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---k--qr~~iaral~~~P~e~l 224 (302)
T 3b9q_A 150 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---A--CKKAVGKIVSGAPNEIL 224 (302)
T ss_dssp HHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---H--HHHHHHTTSTTCCSEEE
T ss_pred HHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---H--HHHHHHHhhccCCCeeE
Confidence 0 000 000111123455555544455566666 3 34599999999999 9
Q ss_pred EEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC
Q psy11254 303 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 353 (741)
Q Consensus 303 LllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~ 353 (741)
|++| |++++|+..+ +..+-.. .++++|++||
T Consensus 225 LvLD-----------ptsglD~~~~--~~~~~~~-------~g~t~iiiTh 255 (302)
T 3b9q_A 225 LVLD-----------GNTGLNMLPQ--AREFNEV-------VGITGLILTK 255 (302)
T ss_dssp EEEE-----------GGGGGGGHHH--HHHHHHH-------TCCCEEEEEC
T ss_pred EEEe-----------CCCCcCHHHH--HHHHHHh-------cCCCEEEEeC
Confidence 9999 5667776533 2222111 2467899999
No 244
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.78 E-value=7.2e-09 Score=97.37 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
..++|+||||||||||++++++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34889999999999999999998744
No 245
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.77 E-value=5.2e-09 Score=126.76 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=86.1
Q ss_pred hHHHhhhCCCCCC-------C--ceEEcCCCChHHHHHHHHHHhcCC--CceeeecccccchhhHHHHHhhhhh-hhccc
Q psy11254 194 PELFQRVGITPPK-------G--CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLFVTSKEDMAILMGNQL-KRRST 261 (741)
Q Consensus 194 ~~~~~~~~l~~~~-------G--vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~ 261 (741)
..++.++++..+. | ++|+||||+||||++|++ |.+.+ ..+.... +... .....
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vp--------------q~~~~l~v~d 833 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVP--------------AEVCRLTPID 833 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEE--------------SSEEEECCCS
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEec--------------cCcCCCCHHH
Confidence 4467777787765 5 789999999999999999 76532 1110000 0000 00001
Q ss_pred ccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH-HHHHHHHHHhccCC
Q psy11254 262 HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI-QRTLMELLNQMDGF 340 (741)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~-~~~l~~lL~~l~~~ 340 (741)
.++...+.......-.+.+++++.+ + +++.+.+.+|++|+||| |++++|+.. ...+..++..+..
T Consensus 834 ~I~~rig~~d~~~~~~stf~~em~~-~--a~al~la~~~sLlLLDE----------p~~Gtd~~dg~~~~~~il~~L~~- 899 (1022)
T 2o8b_B 834 RVFTRLGASDRIMSGESTFFVELSE-T--ASILMHATAHSLVLVDE----------LGRGTATFDGTAIANAVVKELAE- 899 (1022)
T ss_dssp BEEEECC---------CHHHHHHHH-H--HHHHHHCCTTCEEEEEC----------TTTTSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHcCCHHHHhhchhhhHHHHHH-H--HHHHHhCCCCcEEEEEC----------CCCCCChHHHHHHHHHHHHHHHh-
Confidence 1122233332223334567777665 4 77788889999999999 999999875 4556777777653
Q ss_pred CCCCCeEEEEeeCCCCCCCccccCCC
Q psy11254 341 DSLGQVKMIMATNRPDTLDPALLRPG 366 (741)
Q Consensus 341 ~~~~~v~vI~at~~~~~ld~al~r~g 366 (741)
..+.++|++||+.+.......++.
T Consensus 900 --~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 900 --TIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp --TSCCEEEEECCCHHHHHHTSSCSS
T ss_pred --cCCCEEEEEeCCHHHHHHhCCcce
Confidence 236689999999886654444443
No 246
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.77 E-value=1.2e-08 Score=107.26 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCce-eeecccccchhhHHH----HHh-hh------------
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFL-KVVSSLFVTSKEDMA----ILM-GN------------ 254 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~-~v~~~~~~~~~~~~~----~~~-~~------------ 254 (741)
..++++++.+++| ++|+||||+|||||++.|++.+.+..+ .+...........+. ... +.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 4577777888888 789999999999999999999866533 332111100111110 000 00
Q ss_pred ----hhhhcccccccccccCCCccchhh-hhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccH-HHHH
Q psy11254 255 ----QLKRRSTHHLEKTYFPFYSSAIVD-KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR-EIQR 328 (741)
Q Consensus 255 ----~~~~~~~~~l~~~~~~~~~~~~~~-~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~-~~~~ 328 (741)
...+.+..+++...+. ..+... ...++..+++ .+.++.++|.+|+|||+..+... ....|+ ....
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~---~a~~~~~~p~llilDept~~~~~----~~~~d~~~~~~ 173 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKL---AYMRSGLGCDVIILDHISIVVSA----SGESDERKMID 173 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHH---HHHHHTTCCSEEEEEEEC---------------CHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHH---HHHHHhcCCCEEEEcCccccCCC----CCCCCHHHHHH
Confidence 0011111111111110 011111 1122223433 26667889999999996554321 011344 4556
Q ss_pred HHHHHHHhccCCCCCCCeEEEEeeCCC
Q psy11254 329 TLMELLNQMDGFDSLGQVKMIMATNRP 355 (741)
Q Consensus 329 ~l~~lL~~l~~~~~~~~v~vI~at~~~ 355 (741)
.+...|..+.. ..+++||++||+.
T Consensus 174 ~i~~~L~~la~---~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 174 NLMTKLKGFAK---STGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHH---HHCCEEEEEEECC
T ss_pred HHHHHHHHHHH---HhCCeEEEEEecC
Confidence 66666666643 2367999999985
No 247
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.75 E-value=3.3e-08 Score=108.49 Aligned_cols=144 Identities=15% Similarity=0.246 Sum_probs=88.0
Q ss_pred CCceEE--EcCCCCChHHHHHHHHHHh---------CccEEEEechh------hhccc----------cchH-HHHHHHH
Q psy11254 524 PKGCLL--YGPPGTGKTLLARAVASQL---------DANFLKVVSSA------IVDKY----------IGES-ARLIREM 575 (741)
Q Consensus 524 ~~~~ll--~G~~G~GKt~l~~~~a~~~---------~~~~~~v~~~~------l~~~~----------~g~s-~~~i~~~ 575 (741)
+..+++ +||+|+|||++++.+++.+ +..++.+++.. +.... .+.+ ......+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456888 9999999999999999876 33456666432 11110 0111 1222333
Q ss_pred HHHHH-hcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCC-CCCeEEEEeeCCCC---CCC---cccc
Q psy11254 576 FNYAR-NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS-LGQVKMIMATNRPD---TLD---PALL 647 (741)
Q Consensus 576 f~~a~-~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~-~~~v~vi~tTn~~~---~ld---~al~ 647 (741)
..... ...|.||+|||++.+...+. .+......+..++..+.. ++ ..++.+|++||.++ .++ +.+.
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~ 203 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVE 203 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhh
Confidence 33322 24588999999999854320 122223333344444320 01 14688999998776 334 5566
Q ss_pred CCCCcceEEEcCCCCHHHHHHHHHHhhc
Q psy11254 648 RPGRLDRKIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 648 rpgR~d~~i~~~~p~~~~r~~i~~~~~~ 675 (741)
+ |+...+.+++++.++..++++..+.
T Consensus 204 ~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 204 S--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp T--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred h--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 6 5666699999999999999987664
No 248
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.74 E-value=1.1e-08 Score=107.95 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=41.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC---CCceeeec
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVS 238 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~ 238 (741)
++.|-....+++.+.+..-. ..+.+++|+||||||||++|++|+.... .+|..+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~ 61 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNC 61 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence 46778888888887765321 2245699999999999999999998653 34655554
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.74 E-value=3.6e-10 Score=112.43 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHhcCCeEEEeccccccccccCCCCCCc----cHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 295 ARNHQPCIIFMDEIDAIGGRRFSEGTSA----DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 295 A~~~~P~ILllDEid~l~~~~~~p~~~l----D~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
|+..+|.++++|| |++++ |+..++.+.+++.++.. ..+.++|++||+++.+.
T Consensus 137 ~l~~~p~~~~LDe----------p~~~l~~~~d~~~~~~l~~~l~~l~~---~~g~tvi~vtHdl~~~~ 192 (207)
T 1znw_A 137 VFLAPPSWQDLQA----------RLIGRGTETADVIQRRLDTARIELAA---QGDFDKVVVNRRLESAC 192 (207)
T ss_dssp EEEECSCHHHHHH----------HHHTTSCSCHHHHHHHHHHHHHHHHG---GGGSSEEEECSSHHHHH
T ss_pred EEEECCCHHHHHH----------HHHhcCCCCHHHHHHHHHHHHHHHhh---hccCcEEEECCCHHHHH
Confidence 4456777888888 65554 77788888888888753 23568999999877654
No 250
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.74 E-value=1.3e-07 Score=103.84 Aligned_cols=245 Identities=11% Similarity=0.098 Sum_probs=122.3
Q ss_pred cccccChHHHHHHHHHHh-hccCCChHHHhhhCCCCCCCceE--EcCCCChHHHHHHHHHHhcCC---------Cceeee
Q psy11254 170 YSAIGGLSEQIRELREVI-ELPLLNPELFQRVGITPPKGCLL--YGPPGTGKTLLARAVASQLDA---------NFLKVV 237 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i-~~~~~~~~~~~~~~l~~~~GvlL--~Gp~GtGKTtL~r~ia~~l~~---------~~~~v~ 237 (741)
...+.|-++.+++|.+.+ ... ..+.+ ..+..++| +||+|+|||||++.++..+.. .+..+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~------~~~~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRL------LSGAG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHH------HTSSC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHH------hcCCC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367899999999998887 421 11100 11234778 999999999999999987643 222222
Q ss_pred cccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhh-cchHHHHHHHHHHHHHhcCCeEEEeccccccccccC
Q psy11254 238 SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKY-IGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316 (741)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~ 316 (741)
+........-+..+. ..++..... ... .......+...+. ....|.||+|||+|.+...+
T Consensus 94 ~~~~~~~~~~~~~l~------------~~l~~~~~~----~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~- 154 (412)
T 1w5s_A 94 AFNAPNLYTILSLIV------------RQTGYPIQV----RGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSP- 154 (412)
T ss_dssp GGGCCSHHHHHHHHH------------HHHTCCCCC----TTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCT-
T ss_pred CCCCCCHHHHHHHHH------------HHhCCCCCC----CCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhcc-
Confidence 211111110010000 001110000 000 0011122222222 12568899999999986421
Q ss_pred CCCCCccHHHHHHHHHHHHhccCCCC-CCCeEEEEeeCCCCCC---C---ccccCCCccceeeecCCCCHHHHHhccccc
Q psy11254 317 SEGTSADREIQRTLMELLNQMDGFDS-LGQVKMIMATNRPDTL---D---PALLRPGRLDRKIEIPLPNEQARLAHTWPI 389 (741)
Q Consensus 317 ~p~~~lD~~~~~~l~~lL~~l~~~~~-~~~v~vI~at~~~~~l---d---~al~r~gr~d~~i~~~~p~~~~r~~i~~~l 389 (741)
..+.+....+..++..+.. .. ..++.+|++|++++.. + +.+.+ ++...+.+++++..+..+++...
T Consensus 155 ----~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 155 ----RIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp ----TSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred ----CcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHH
Confidence 1123333334444443320 01 1568899899876632 2 33334 44444899999988776662111
Q ss_pred hhccCCCcccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHH
Q psy11254 390 SIHAGPIAKHGEIDYEAVVKLSD------SFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVR 448 (741)
Q Consensus 390 ~~~~~~~~~~~~~~~~~la~~t~------g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 448 (741)
.................++..+. |. ...+..++..+...+.......++.+++..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 228 AELGLRDTVWEPRHLELISDVYGEDKGGDGS-ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHhcCCCCCCChHHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 11111000001112345666776 54 456667777766655554445566666655544
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.74 E-value=1.4e-08 Score=101.99 Aligned_cols=141 Identities=12% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhh---hhhhhccc---ccccccccCCCcc
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMG---NQLKRRST---HHLEKTYFPFYSS 274 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~---~~l~~~~~~~~~~ 274 (741)
.+++| ++|+||||||||||++.+++.+.+..+.+...........+..... ........ ..++.........
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 34556 7899999999999999999876443333322111111111111110 00000000 0000000000000
Q ss_pred chhhhhcchHHHHHHHHHHHHHhcCCe--EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEee
Q psy11254 275 AIVDKYIGESARLIREMFNYARNHQPC--IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT 352 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~~~~~~A~~~~P~--ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at 352 (741)
......+.+ +....+.+.+...+|+ +|+|||+.++.. .|+...+.+...+..+.. ..+++||++|
T Consensus 99 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~llilDe~~~~~~--------~d~~~~~~~~~~l~~~~~---~~~~~vi~~~ 165 (235)
T 2w0m_A 99 WSLVNLTPE--ELVNKVIEAKQKLGYGKARLVIDSVSALFL--------DKPAMARKISYYLKRVLN---KWNFTIYATS 165 (235)
T ss_dssp TBCSSCCHH--HHHHHHHHHHHHHCSSCEEEEEETGGGGSS--------SCGGGHHHHHHHHHHHHH---HTTEEEEEEE
T ss_pred eeecCCCHH--HHHHHHHHHHHhhCCCceEEEEECchHhhc--------CCHHHHHHHHHHHHHHHH---hCCCeEEEEe
Confidence 000111222 2233355555667999 999999655431 255455666666666532 2468999999
Q ss_pred CCCC
Q psy11254 353 NRPD 356 (741)
Q Consensus 353 ~~~~ 356 (741)
|+..
T Consensus 166 h~~~ 169 (235)
T 2w0m_A 166 QYAI 169 (235)
T ss_dssp C---
T ss_pred ccCc
Confidence 9873
No 252
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.71 E-value=1.4e-07 Score=100.87 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhh
Q psy11254 176 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQ 255 (741)
Q Consensus 176 l~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 255 (741)
+++..+.+...+.- =.++.+++|+||+|+|||++++++|..+.+........+ ..-..+..+....
T Consensus 7 ~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c--~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 7 LRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSC--GHCRGCQLMQAGT 72 (334)
T ss_dssp GHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCC--SCSHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCC--CCCHHHHHHhcCC
Confidence 45666666666542 134566999999999999999999998875432110000 0000111111100
Q ss_pred hhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 331 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~ 331 (741)
+.+...+.. .. .+... ....+++++..+.. ..+.|++|||+|.+. ......|
T Consensus 73 -------~~d~~~~~~--~~-~~~~~--~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naL- 128 (334)
T 1a5t_A 73 -------HPDYYTLAP--EK-GKNTL--GVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANAL- 128 (334)
T ss_dssp -------CTTEEEECC--CT-TCSSB--CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHH-
T ss_pred -------CCCEEEEec--cc-cCCCC--CHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHH-
Confidence 000000000 00 00111 12234555655432 357899999999873 2233444
Q ss_pred HHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 332 ELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 332 ~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
++.++.. ..++.+|++||+++.+.+.+.+ |. ..+.|+.|+..+....
T Consensus 129 --Lk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~ 175 (334)
T 1a5t_A 129 --LKTLEEP--PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTW 175 (334)
T ss_dssp --HHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred --HHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHH
Confidence 4444432 3578899999999989998887 54 4689999998877665
No 253
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=4.7e-09 Score=109.76 Aligned_cols=122 Identities=19% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHhCcc--EEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccC
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~--~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~ 597 (741)
|+.++..++|+||||||||++|..+|...+.. |+.....+.++.+..+.+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45556668999999999999999999864433 55553344444444555666666777666554 999999999865
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 598 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 646 (741)
Q Consensus 598 ~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al 646 (741)
........ ....+.+.++|..+.++....++.+|++|| +...|+++
T Consensus 197 ~~~~~s~~--G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTS--GGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccc--chHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44221100 011233444455444433333567888888 66777775
No 254
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.70 E-value=5.4e-09 Score=108.93 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=70.6
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCCC----------ceeeecccccchhhHHH-HH--hhhhh-hhccccccccc
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDAN----------FLKVVSSLFVTSKEDMA-IL--MGNQL-KRRSTHHLEKT 267 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~----------~~~v~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~l~~~ 267 (741)
+++| ++|+||||||||||++.+++.+... ...+...........+. .+ .+... .......++.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 3455 7899999999999999999866431 11111100011111110 00 01100 00111122333
Q ss_pred ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeE
Q psy11254 268 YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347 (741)
Q Consensus 268 ~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~ 347 (741)
.+.......+..+++++.+++ +++..+|++|+|||+-++... ...+......+...|..+.. ..+++
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i-----~~l~~~~~livlDe~~~~~~~-----d~~~~~~~~~~~~~L~~l~~---~~g~t 173 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGL-----KRAAEGRRLMVLDTLRRFHIE-----EENASGPMAQVIGRMEAIAA---DTGCS 173 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHH-----HHHHTTCSEEEEECGGGGCCS-----CTTCHHHHHHHHHHHHHHHH---HHCCE
T ss_pred EEeecCCCCcccCCHHHHHHH-----HHhcCCCCEEEECCHHHhcCC-----CcCchHHHHHHHHHHHHHHH---HcCCE
Confidence 333333444566777765544 244457999999996665421 01112233455555555532 24679
Q ss_pred EEEeeCCCCCC
Q psy11254 348 MIMATNRPDTL 358 (741)
Q Consensus 348 vI~at~~~~~l 358 (741)
||+++|+....
T Consensus 174 vi~i~H~~~~~ 184 (279)
T 1nlf_A 174 IVFLHHASKGA 184 (279)
T ss_dssp EEEEEEC----
T ss_pred EEEEecCCCcc
Confidence 99999987654
No 255
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.70 E-value=1.5e-08 Score=117.30 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHcc----CC------------CCCCCeEEEEeeCCC--CCCCc
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD----GF------------DSLGQVKMIMATNRP--DTLDP 644 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~----g~------------~~~~~v~vi~tTn~~--~~ld~ 644 (741)
.+.+|||||++.+ ++..+..+..+|+.-. |. .-..++.||+|||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 4569999999985 2355667777776432 10 001267799999987 68999
Q ss_pred cccCCCCcc---eEEEcCCC---CHHHHHHHHHHhhcCcc---ccCCCCccccccccccc---c--------cchHHHHH
Q psy11254 645 ALLRPGRLD---RKIEIPLP---NEQARLEILKIHAGPIA---KHGEIGDAATKWVLPFT---A--------GGFIYIAT 704 (741)
Q Consensus 645 al~rpgR~d---~~i~~~~p---~~~~r~~i~~~~~~~~~---~~~~~~~~a~~~l~~~~---s--------~gf~~~a~ 704 (741)
+|++ ||+ ..+.|+.. +.+....+++....... ....+++.+...+.... . +-+...+.
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9998 997 56776543 34455566554333222 12345655554444322 1 23455555
Q ss_pred HHhhhhhhh-cCCCcccHHHHHHHHH
Q psy11254 705 VSVIPELLE-DTSPKQTVKEILALLL 729 (741)
Q Consensus 705 ~~~~~~l~~-~~~~~~s~~~i~~~l~ 729 (741)
.+.+..++. +.+...+.+|+..++.
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHH
Confidence 555555553 3456788888887763
No 256
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.70 E-value=9.8e-09 Score=111.01 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=81.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccC-
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG- 597 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~- 597 (741)
++++++..++|+|||||||||+++++++.++..++.+..++- .....+..+ .+.+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHh------cchhHHHHHHHHHHHHH
Confidence 478888899999999999999999999988776554332211 001112222 2346789999999875
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCC
Q psy11254 598 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 598 ~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~ 660 (741)
.|..... + ... ....+.+.++|. +.|+++||+++.+ ++++||||++..++..+
T Consensus 232 ~r~l~~~--~-~~~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSG--Q-GIN-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCC--S-HHH-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcccc--C-cch-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3322111 1 111 223445556653 4488999999999 89999999999888765
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.69 E-value=4.8e-08 Score=104.77 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=77.7
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeeccccc--chh--hHHHHH---------hh----------
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFV--TSK--EDMAIL---------MG---------- 253 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~--~~~--~~~~~~---------~~---------- 253 (741)
.+++.+++| ++|+|||||||||+++.||+.+.+..+++...... ... ...... .+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 467777777 78999999999999999999987765555432110 000 000000 00
Q ss_pred --hhh-----hhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCe--EEEeccccccccccCCCCCCccH
Q psy11254 254 --NQL-----KRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPC--IIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 254 --~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~--ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+.+ .......++..++.......+.+++ +.+..+++|+..+|. +|++| |++++|.
T Consensus 229 v~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-----kqr~~iaral~~~P~e~lLvLD-----------pttglD~ 292 (359)
T 2og2_A 229 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-----ACKKAVGKIVSGAPNEILLVLD-----------GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH-----HHHHHHHHHSTTCCSEEEEEEE-----------GGGGGGG
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH-----HHHHHHHHHHhcCCCceEEEEc-----------CCCCCCH
Confidence 000 0111123444555444455566665 344599999999999 99999 5667776
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeC
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATN 353 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~ 353 (741)
..+ +..+-.. .++++|++||
T Consensus 293 ~~~--~~~~~~~-------~g~t~iiiTh 312 (359)
T 2og2_A 293 LPQ--AREFNEV-------VGITGLILTK 312 (359)
T ss_dssp HHH--HHHHHHH-------TCCCEEEEES
T ss_pred HHH--HHHHHHh-------cCCeEEEEec
Confidence 533 2222111 2467899999
No 258
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.68 E-value=1.7e-08 Score=108.45 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=63.7
Q ss_pred CCC-ceEEcCCCChHHHHHHHHHHhcCCC-ceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcc
Q psy11254 205 PKG-CLLYGPPGTGKTLLARAVASQLDAN-FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIG 282 (741)
Q Consensus 205 ~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G 282 (741)
+.| ++++|||||||||+++++++.+.+. .+.+..... . ....... ...-......+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed--~---------------~e~~~~~-----~~~~v~q~~~~ 179 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED--P---------------IEFVHES-----KKCLVNQREVH 179 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES--S---------------CCSCCCC-----SSSEEEEEEBT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC--c---------------HHhhhhc-----cccceeeeeec
Confidence 344 7899999999999999999998765 233211000 0 0000000 00000000001
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 283 ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 283 ~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
........++++|+..+|++|++|| |+ |.+....+.++. . .+.+||+++|+.+.+
T Consensus 180 ~~~~~~~~~La~aL~~~PdvillDE----------p~---d~e~~~~~~~~~---~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 180 RDTLGFSEALRSALREDPDIILVGE----------MR---DLETIRLALTAA---E-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTBSCHHHHHHHHTTSCCSEEEESC----------CC---SHHHHHHHHHHH---H-----TTCEEEEEESCSSHH
T ss_pred cccCCHHHHHHHHhhhCcCEEecCC----------CC---CHHHHHHHHHHH---h-----cCCEEEEEEccChHH
Confidence 0001123489999999999999999 66 555544444432 1 245799999998765
No 259
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.66 E-value=1.7e-08 Score=118.58 Aligned_cols=128 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred HHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC-CCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCcc
Q psy11254 196 LFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD-ANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSS 274 (741)
Q Consensus 196 ~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (741)
+++++++. ..-++|+||||+||||++|+|++..- +..+.+.... ...+ ..+...+...+. ..
T Consensus 568 vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~----~~~i---------~~v~~i~~~~~~---~d 630 (765)
T 1ewq_A 568 VPNDLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE----EAHL---------PLFDGIYTRIGA---SD 630 (765)
T ss_dssp CCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS----EEEE---------CCCSEEEEECCC-----
T ss_pred EeeeccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh----ccce---------eeHHHhhccCCH---HH
Confidence 44566666 23388999999999999999999752 2222221100 0000 000011111111 12
Q ss_pred chhhhhcchHHHHHHHHHHHHH--hcCCeEEEeccccccccccCCC---CCCccHHHH-HHHHHHHHhccCCCCCCCeEE
Q psy11254 275 AIVDKYIGESARLIREMFNYAR--NHQPCIIFMDEIDAIGGRRFSE---GTSADREIQ-RTLMELLNQMDGFDSLGQVKM 348 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~~~~~~A~--~~~P~ILllDEid~l~~~~~~p---~~~lD~~~~-~~l~~lL~~l~~~~~~~~v~v 348 (741)
.+....++++.+++ .++.++ ..+|++++||| | ++++|.... ..+.+++.. . +.++
T Consensus 631 ~l~~g~S~~~~e~~--~la~il~~a~~p~LlLLDE----------pgrGTs~lD~~~~~~~i~~~L~~-~------g~~v 691 (765)
T 1ewq_A 631 DLAGGKSTFMVEME--EVALILKEATENSLVLLDE----------VGRGTSSLDGVAIATAVAEALHE-R------RAYT 691 (765)
T ss_dssp ----CCSHHHHHHH--HHHHHHHHCCTTEEEEEES----------TTTTSCHHHHHHHHHHHHHHHHH-H------TCEE
T ss_pred HHHhcccHHHHHHH--HHHHHHHhccCCCEEEEEC----------CCCCCCCcCHHHHHHHHHHHHHh-C------CCEE
Confidence 23334555666665 455566 78999999999 7 888898765 356666655 2 4589
Q ss_pred EEeeCCCCCCC
Q psy11254 349 IMATNRPDTLD 359 (741)
Q Consensus 349 I~at~~~~~ld 359 (741)
|++||+.+...
T Consensus 692 l~~TH~~~l~~ 702 (765)
T 1ewq_A 692 LFATHYFELTA 702 (765)
T ss_dssp EEECCCHHHHT
T ss_pred EEEeCCHHHHH
Confidence 99999977544
No 260
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.63 E-value=1.2e-08 Score=110.21 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhhccCC--------ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh
Q psy11254 176 LSEQIRELREVIELPLL--------NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245 (741)
Q Consensus 176 l~~~k~~i~e~i~~~~~--------~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~ 245 (741)
..++++.+ +.+.++.. ...+++++++.+++| ++|+||||||||||+++|++.++.....+.. .
T Consensus 131 ~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~------~ 203 (377)
T 1svm_A 131 SADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL------P 203 (377)
T ss_dssp CCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSS------C
T ss_pred hHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEec------c
Confidence 34455555 55665442 246777777777766 8899999999999999999976432211100 0
Q ss_pred hHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccccccc-ccCCCCCCccH
Q psy11254 246 EDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGG-RRFSEGTSADR 324 (741)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~-~~~~p~~~lD~ 324 (741)
.. . . .+......+..++++|+++.+.. .+..... +.
T Consensus 204 ----------------------------~~---~--------~--~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~--~~ 240 (377)
T 1svm_A 204 ----------------------------LD---R--------L--NFELGVAIDQFLVVFEDVKGTGGESRDLPSG--QG 240 (377)
T ss_dssp ----------------------------TT---T--------H--HHHHGGGTTCSCEEETTCCCSTTTTTTCCCC--SH
T ss_pred ----------------------------ch---h--------H--HHHHHHhcchhHHHHHHHHHHHHHHhhcccc--Cc
Confidence 00 0 0 01111223445789999998875 2211111 11
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCC
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPL 376 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~ 376 (741)
. . ....+.+.+++ .+.|+++||+++.+ +++.++|+++..+....
T Consensus 241 ~-~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 241 I-N-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp H-H-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred c-h-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 0 0 11222333444 45688899999999 78999999998877654
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.62 E-value=7.4e-08 Score=96.71 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
.+++| ++|+||||||||||+++|++.+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34556 789999999999999999996644
No 262
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.61 E-value=6.2e-08 Score=82.11 Aligned_cols=74 Identities=39% Similarity=0.640 Sum_probs=65.7
Q ss_pred CHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcccc
Q psy11254 378 NEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454 (741)
Q Consensus 378 ~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 454 (741)
|..+|.+| ++.|...+....++|+..+++.|+||+|+||.++|++|++.++++....++.+||..+++++..+.
T Consensus 2 d~~~R~~I---l~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 2 DLEGRANI---FRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSSHHHHH---HHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CHHHHHHH---HHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 34678888 888888888888999999999999999999999999999999999989999999999999876543
No 263
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.60 E-value=6.8e-08 Score=90.63 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchHHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 599 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r 599 (741)
++..++|+||||+|||++++++++.+ +...+.++..++... +....|.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh--
Confidence 56779999999999999999999988 555777777766543 1123578999999987421
Q ss_pred CCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCC-CCCCC--ccccCCCCcceEEE
Q psy11254 600 FSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR-PDTLD--PALLRPGRLDRKIE 657 (741)
Q Consensus 600 ~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~-~~~ld--~al~rpgR~d~~i~ 657 (741)
.. .+.+..+++.+.. .+..++|+|||. |..+. +.+.. |+..-+.
T Consensus 98 --------~~-~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 98 --------EE-QALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp --------HH-HHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred --------HH-HHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 11 4555566655431 112236667774 54443 45544 5544333
No 264
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.60 E-value=4.1e-08 Score=96.66 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred ceEEEcCCCCChHHHHHHHHHHh--------C-ccEEEEechhhhcccc----------chHHH--HHHHHHHHH--Hhc
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQL--------D-ANFLKVVSSAIVDKYI----------GESAR--LIREMFNYA--RNH 582 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~--------~-~~~~~v~~~~l~~~~~----------g~s~~--~i~~~f~~a--~~~ 582 (741)
-.+++|+||||||++|..++... + .+++..+..++...++ ..... .....++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 36899999999999987764332 3 5555555554433221 11100 112334432 223
Q ss_pred CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~~p~ 662 (741)
..+||+|||++.+++.|.... .. . .+|..+.. ......-||++|+.+..+|.++.. |++..++++.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~--e~---~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS--KI---P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC--CC---C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccc--hh---H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 468999999999986653211 11 1 24445543 334456689999999999999776 999999998865
Q ss_pred HH
Q psy11254 663 EQ 664 (741)
Q Consensus 663 ~~ 664 (741)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 265
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.60 E-value=3.8e-08 Score=116.35 Aligned_cols=135 Identities=12% Similarity=0.058 Sum_probs=70.4
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC-CceeeecccccchhhHHHHHhhhhhhhcccccccccccCC
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA-NFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (741)
.++.++++. +.| ++|+||||+||||++|+|++..-. ..+..... .... -......+...+...
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa----~~~~---------i~~~~~i~~~~~~~d 661 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA----QKVE---------IGPIDRIFTRVGAAD 661 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS----SEEE---------ECCCCEEEEEEC---
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch----hccc---------ceeHHHHHhhCCHHH
Confidence 356677777 566 789999999999999999986411 11100000 0000 000001111122211
Q ss_pred CccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH-HHHHHHhccCCCCCCCeEEEE
Q psy11254 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT-LMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 272 ~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~-l~~lL~~l~~~~~~~~v~vI~ 350 (741)
......+.+++++.+ + ........+|++++||| |+++.|+..... +..++..+.. ..+.++|+
T Consensus 662 ~l~~~~stf~~e~~~-~--~~il~~a~~psLlLLDE----------p~~Gtd~~d~~~i~~~ll~~l~~---~~g~~vl~ 725 (800)
T 1wb9_A 662 DLASGRSTFMVEMTE-T--ANILHNATEYSLVLMDE----------IGRGTSTYDGLSLAWACAENLAN---KIKALTLF 725 (800)
T ss_dssp --------CHHHHHH-H--HHHHHHCCTTEEEEEES----------CCCCSSSSHHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred HHHhhhhhhhHHHHH-H--HHHHHhccCCCEEEEEC----------CCCCCChhHHHHHHHHHHHHHHh---ccCCeEEE
Confidence 112223345555432 3 22223467999999999 866666543333 3556665542 23568999
Q ss_pred eeCCCCCCC
Q psy11254 351 ATNRPDTLD 359 (741)
Q Consensus 351 at~~~~~ld 359 (741)
+||+.+...
T Consensus 726 ~TH~~el~~ 734 (800)
T 1wb9_A 726 ATHYFELTQ 734 (800)
T ss_dssp ECSCGGGGG
T ss_pred EeCCHHHHH
Confidence 999987543
No 266
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=1.2e-07 Score=79.07 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccccccccccceEEEEecCCCCeeEEeecc
Q psy11254 44 QYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRR 123 (741)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (741)
+...++++++.+++.|+. |+++++.++++ ++++++++++++++++.+
T Consensus 3 ev~~lkeei~~L~~~P~~------vG~v~e~~dd~---------------------------~~iVkss~g~~~~V~v~~ 49 (85)
T 3h43_A 3 ENEILRRELDRMRVPPLI------VGTVVDKVGER---------------------------KVVVKSSTGPSFLVNVSH 49 (85)
T ss_dssp HHHHHHHHHHHHHSCCEE------EEEEEEEEETT---------------------------EEEEEETTSSEEEEEBCT
T ss_pred HHHHHHHHHHHhcCCCce------EEEEEEEcCCC---------------------------EEEEEeCCCCeEEEEecC
Confidence 445678899999999998 99999999988 889999999999999999
Q ss_pred cccccCCCCCCEEEeccchhhhhhcCCCc
Q psy11254 124 QLDKAKLKSGTRVALDMTTLTIMRYLPRE 152 (741)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (741)
.++.+.|+||++|+++..++++++.+|+.
T Consensus 50 ~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~~ 78 (85)
T 3h43_A 50 FVNPDDLAPGKRVCLNQQTLTVVDVLPEL 78 (85)
T ss_dssp TSCGGGCCTTCEEEECTTTCCEEEECC--
T ss_pred ccCHHHCCCCCEEEECCcccCHhhhhhhh
Confidence 99999999999999999999999998873
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.58 E-value=1.3e-07 Score=101.53 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=31.9
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++.+.+.+=.-++..+++| +.|+||||||||||++.+++..
T Consensus 113 isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 113 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455554333346778888 7899999999999999999987
No 268
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=2.3e-07 Score=97.69 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhc------CCCceeeecccccchhhHH
Q psy11254 175 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL------DANFLKVVSSLFVTSKEDM 248 (741)
Q Consensus 175 Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l------~~~~~~v~~~~~~~~~~~~ 248 (741)
|.+++++.++..+.-. . ...++|+||||+||||+++++|..+ .+++..+...
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~--------- 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE--------- 58 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---------
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---------
Confidence 4556677777766532 1 2358899999999999999999753 1222222110
Q ss_pred HHHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccH
Q psy11254 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADR 324 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~ 324 (741)
+... .-..+|+++..+.. .+..|+||||+|.+. .
T Consensus 59 -----------------------------~~~~--~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~ 96 (305)
T 2gno_A 59 -----------------------------GENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------Q 96 (305)
T ss_dssp -----------------------------SSCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------H
T ss_pred -----------------------------cCCC--CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------H
Confidence 0011 11234555555532 234799999999873 2
Q ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 325 ~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
..+..|...+.+- ..++.+|++|++++.+.+++.. | .+.|++|+..+-...
T Consensus 97 ~a~naLLk~LEep-----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 97 QAANAFLKALEEP-----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp HHHHHTHHHHHSC-----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 3344455554432 3578899999999989888888 5 678877776655443
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.54 E-value=8.7e-09 Score=100.76 Aligned_cols=23 Identities=43% Similarity=0.744 Sum_probs=21.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
++|+||||||||||+++|+|.+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 67999999999999999999885
No 270
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.52 E-value=2e-06 Score=113.08 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=50.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhhccccchH--HHHHHHHHHHHH-hcCCeEEEEcccc
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGES--ARLIREMFNYAR-NHQPCIIFMDEID 593 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~~~~~g~s--~~~i~~~f~~a~-~~~p~Vl~iDE~d 593 (741)
.|..+.||+|..||||+++++..|-..+..++.+..+ ..| |.. ...++.++..|- ...|.|++|+|..
T Consensus 1644 qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~---k~Y-~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1644 QPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVN---NNY-KSSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp STTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC-------C-CHHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred cCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeee---CCC-CHHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5667899999999999999999999999888776544 333 222 355788888883 4568899998865
No 271
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.50 E-value=6.6e-07 Score=86.48 Aligned_cols=124 Identities=16% Similarity=0.239 Sum_probs=70.2
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhCccEEEEechh---------------------------------hhccccch--HHH
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSSA---------------------------------IVDKYIGE--SAR 570 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~---------------------------------l~~~~~g~--s~~ 570 (741)
.++|+|||||||||+++.+++.++..+.-....+ ..+++++. .++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 4789999999999999999998864332211111 11222221 234
Q ss_pred HHHHHHHHH-----HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC--
Q psy11254 571 LIREMFNYA-----RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD-- 643 (741)
Q Consensus 571 ~i~~~f~~a-----~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld-- 643 (741)
..+..+..| ....|.++++||++-. ...|....+.+..++.. .+..+|++||..+..+
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~--------~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM--------ELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT--------GGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCc--------ccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 445555553 5678999999996532 12345556666666653 1333666665333222
Q ss_pred ccccCCCCcc-eEEEcCCCCHHHH
Q psy11254 644 PALLRPGRLD-RKIEIPLPNEQAR 666 (741)
Q Consensus 644 ~al~rpgR~d-~~i~~~~p~~~~r 666 (741)
..+.. |-+ +++++...+.++.
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTTTTH
T ss_pred HHHHh--cCCcEEEEecCcCHHHH
Confidence 33443 433 4566666664433
No 272
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.49 E-value=1.9e-07 Score=78.26 Aligned_cols=74 Identities=28% Similarity=0.482 Sum_probs=65.7
Q ss_pred CHHHHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhcccc
Q psy11254 378 NEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNK 454 (741)
Q Consensus 378 ~~~~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 454 (741)
|..+|.+| ++.|...+....++++..++..|+||+|+||.++|++|++.++++....++.+||..+++.+.++.
T Consensus 2 d~~~R~~I---l~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLI---FSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHH---HHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHH---HHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 56788888 788888887778899999999999999999999999999999998888999999999999886643
No 273
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.48 E-value=1.4e-07 Score=101.08 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=38.5
Q ss_pred ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 193 NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 193 ~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
...+++++ +++.+| ++|+||||||||||+++|+|...++.+.+..
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 34578888 899999 8899999999999999999999988765543
No 274
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.45 E-value=3.5e-08 Score=100.70 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=25.0
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
+...++++++|++++| ++|.||||||||||+++|++.++.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4556889999999999 789999999999999999998764
No 275
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.44 E-value=8.8e-08 Score=100.14 Aligned_cols=113 Identities=17% Similarity=0.275 Sum_probs=57.7
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCC--CceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchHH
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDA--NFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESA 285 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~ 285 (741)
++|+||||||||+|+..++...+. .|...... +.++.+..+..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~e-----------------------------------E~v~~~~~~le 170 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFG-----------------------------------EPLSGYNTDFN 170 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBS-----------------------------------CSSTTCBCCHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecch-----------------------------------hhhhhhhcCHH
Confidence 789999999999999999975221 12222100 00111123334
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccccccCC-CC-CCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccc
Q psy11254 286 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFS-EG-TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPAL 362 (741)
Q Consensus 286 ~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~-p~-~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al 362 (741)
+.+..++..+.. .+ +|+|||++.+...... +. .... +.+.+++..|.++....++++|+++| +...++++
T Consensus 171 ~~l~~i~~~l~~-~~-LLVIDsI~aL~~~~~~~s~~G~v~----~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 171 VFVDDIARAMLQ-HR-VIVIDSLKNVIGAAGGNTTSGGIS----RGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHHHH-CS-EEEEECCTTTC-----------CC----HHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHhh-CC-EEEEecccccccccccccccchHH----HHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 444334443333 33 9999999998654322 11 0112 22333443333222234678888887 55555543
No 276
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.44 E-value=2.2e-08 Score=105.74 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=62.5
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCCCc-----eeeecccccchhhHHHHHh------hh---hhhhccccccccc
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDANF-----LKVVSSLFVTSKEDMAILM------GN---QLKRRSTHHLEKT 267 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~-----~~v~~~~~~~~~~~~~~~~------~~---~~~~~~~~~l~~~ 267 (741)
.++| ++|+||||||||||+++|+|.+.+.. +-+.-..+.... ...... +. ....++...++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 5667 78999999999999999999987642 222221111111 111110 00 0011223333333
Q ss_pred ccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecccc
Q psy11254 268 YFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309 (741)
Q Consensus 268 ~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid 309 (741)
+ .......+..||||+.+++ .+++|+..+|+|||+||+.
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv--~~a~al~~~p~ilIlDep~ 204 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDII--PGAEQVVRHPDILILEGLN 204 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEE--EEEEEEECSCSEEEEECTT
T ss_pred C-CCcccCCcccCChhhhhhh--hhHHHhccCCCEEEECCcc
Confidence 3 2222345678999999987 7788889999999999943
No 277
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.44 E-value=2.8e-07 Score=91.79 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHH
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVAS 227 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~ 227 (741)
.+++| ++|+||||+|||||++.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555 78999999999999999998
No 278
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.42 E-value=7.2e-07 Score=98.50 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=43.1
Q ss_pred hhccCC-ChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 187 IELPLL-NPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 187 i~~~~~-~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
+..++. ...+++++ +++.+| ++|+||||||||||+++|+|...++.+.+..
T Consensus 137 v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 137 IEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp CCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred cceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 345554 46789999 999999 7899999999999999999999988776654
No 279
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.41 E-value=4.2e-07 Score=84.92 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=58.0
Q ss_pred cchhhhhcchHHHHHHHH----HHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 274 SAIVDKYIGESARLIREM----FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~----~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
...+..+|||+++++.-+ +++|+..+|.++++|| |++++|+..+..+.+++..+.. .+.+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii 117 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE----------PTPYLDEERRRKLITIMERYLK----KIPQVI 117 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEES----------CSCTTCHHHHHHHHHHHHHTGG----GSSEEE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEEC----------CCccCCHHHHHHHHHHHHHHHc----cCCEEE
Confidence 566789999999998332 2478889999999999 9999999999999999988753 256899
Q ss_pred EeeCCCC
Q psy11254 350 MATNRPD 356 (741)
Q Consensus 350 ~at~~~~ 356 (741)
++||+++
T Consensus 118 ivsH~~~ 124 (148)
T 1f2t_B 118 LVSHDEE 124 (148)
T ss_dssp EEESCGG
T ss_pred EEEChHH
Confidence 9999974
No 280
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.40 E-value=4e-08 Score=101.67 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=63.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchh----hHHHHHhhhhhhhcccccccccccC-------------
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK----EDMAILMGNQLKRRSTHHLEKTYFP------------- 270 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~------------- 270 (741)
++|+||||+|||||+++|+|...+..+.+......... ..++...++.....-..+.+..++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~ 84 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIE 84 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHH
Confidence 67999999999999999999998776654321100000 0000000000000000000111110
Q ss_pred -----CCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCC
Q psy11254 271 -----FYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQ 345 (741)
Q Consensus 271 -----~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~ 345 (741)
.....+...+|||+.+++ .+++|.. +++|||| |+.++++... +++..+.. .
T Consensus 85 ~~~~~~~~~~~~~~LS~G~~qrv--~iaRal~---~llllde----------p~~gL~~lD~----~~l~~L~~----~- 140 (270)
T 3sop_A 85 KYINEQYEKFLKEEVNIARKKRI--PDTRVHC---CLYFISP----------TGHSLRPLDL----EFMKHLSK----V- 140 (270)
T ss_dssp HHHHHHHHHHHHHHSCTTCCSSC--CCCSCCE---EEEEECC----------CSSSCCHHHH----HHHHHHHT----T-
T ss_pred HHHHHHHHhhhHHhcCcccchhh--hhheeee---eeEEEec----------CCCcCCHHHH----HHHHHHHh----c-
Confidence 111234556777777766 5555544 5999999 8888887653 33444443 1
Q ss_pred eEEEEeeCCCCCCC
Q psy11254 346 VKMIMATNRPDTLD 359 (741)
Q Consensus 346 v~vI~at~~~~~ld 359 (741)
+.+|++.|..|.+.
T Consensus 141 ~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 141 VNIIPVIAKADTMT 154 (270)
T ss_dssp SEEEEEETTGGGSC
T ss_pred CcEEEEEeccccCC
Confidence 57888888766654
No 281
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.38 E-value=2.4e-07 Score=91.22 Aligned_cols=69 Identities=26% Similarity=0.418 Sum_probs=46.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccccchH-HHHHHHHHHHHHhcCCeEEEEcccccc
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKYIGES-ARLIREMFNYARNHQPCIIFMDEIDAI 595 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~~g~s-~~~i~~~f~~a~~~~p~Vl~iDE~d~~ 595 (741)
.+++|+||||||||+++++++..+ +.+++.++.+++...+.... ...+..++..... +.+|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 679999999999999999999988 45677777776654322110 0011233333332 369999999764
No 282
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.36 E-value=3.4e-07 Score=99.17 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC-ceee
Q psy11254 195 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN-FLKV 236 (741)
Q Consensus 195 ~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~-~~~v 236 (741)
++++++.+....-++++|||||||||++++|++.+.+. .+.+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 45666653322228899999999999999999998765 4555
No 283
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.34 E-value=3.1e-07 Score=91.87 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
..++| ++|+||||||||||+++|+|...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 44566 779999999999999999999864
No 284
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.33 E-value=1.1e-05 Score=106.25 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcchH
Q psy11254 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES 284 (741)
Q Consensus 205 ~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 284 (741)
..|..+.||+|||||.++|.+|..+|.....+..+..... ...
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~----------------------------------~~~--- 646 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL----------------------------------QAM--- 646 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH----------------------------------HHH---
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH----------------------------------HHH---
Confidence 3456799999999999999999999988766654321111 000
Q ss_pred HHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhc-------------c-C--CCCCCCeEE
Q psy11254 285 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM-------------D-G--FDSLGQVKM 348 (741)
Q Consensus 285 ~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l-------------~-~--~~~~~~v~v 348 (741)
.+ .|.-+.. ......+||++. ++.++...+.+.+..+ . | +.-.....|
T Consensus 647 -g~---i~~G~~~-~GaW~cfDEfNr-----------l~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~v 710 (3245)
T 3vkg_A 647 -SR---IFVGLCQ-CGAWGCFDEFNR-----------LEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGI 710 (3245)
T ss_dssp -HH---HHHHHHH-HTCEEEEETTTS-----------SCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEE
T ss_pred -HH---HHhhHhh-cCcEEEehhhhc-----------CCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEE
Confidence 11 2222222 234788999754 4555555555544311 1 1 011234566
Q ss_pred EEeeC----CCCCCCccccCCCccceeeecCCCCHHHHHhc
Q psy11254 349 IMATN----RPDTLDPALLRPGRLDRKIEIPLPNEQARLAH 385 (741)
Q Consensus 349 I~at~----~~~~ld~al~r~gr~d~~i~~~~p~~~~r~~i 385 (741)
++|.| -...+++.+.. +| +.+.+..||.+.-.++
T Consensus 711 fiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 711 FVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQV 748 (3245)
T ss_dssp EECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHH
T ss_pred EEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHH
Confidence 66666 24578888877 55 4589999998766655
No 285
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.31 E-value=9.2e-07 Score=89.43 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHh
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQ 228 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~ 228 (741)
+++| ++|+||||+|||||++.+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455 789999999999999999995
No 286
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.26 E-value=4.7e-07 Score=75.60 Aligned_cols=68 Identities=26% Similarity=0.326 Sum_probs=51.9
Q ss_pred HHHhccccchhccCCCcccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhccccchHhHHHHHHHhc
Q psy11254 381 ARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVS 451 (741)
Q Consensus 381 ~r~~i~~~l~~~~~~~~~~~~~~~~~la~~t~g~~gadi~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~~ 451 (741)
+|.+| ++.|...+....++|+..++..|+||+|+||.++|++|++.++++....++.+||..+++++.
T Consensus 2 ~R~~I---l~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 2 ERRLI---FGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHH---HHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 46667 777877777777899999999999999999999999999999999888999999999998764
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.26 E-value=1.8e-06 Score=89.34 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=70.4
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhh-------------------------hcc--------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAI-------------------------VDK-------- 563 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l-------------------------~~~-------- 563 (741)
+.+.++..+.|.||||||||||++++++.+.+.-..+ .+.++ ...
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~ 108 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence 4466778899999999999999999999875442222 11111 000
Q ss_pred ---ccc------------------------------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHH
Q psy11254 564 ---YIG------------------------------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 610 (741)
Q Consensus 564 ---~~g------------------------------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~ 610 (741)
..+ ..+++-|-.+..|....|.+|++||..+ +-|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts----------~LD~~~ 178 (275)
T 3gfo_A 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA----------GLDPMG 178 (275)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTT----------TCCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccc----------cCCHHH
Confidence 000 0112224455556667899999999665 456666
Q ss_pred HHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 611 QRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 643 (741)
Q Consensus 611 ~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld 643 (741)
...+.++|..+.. . .+.-||++|++.+.+.
T Consensus 179 ~~~i~~~l~~l~~--~-~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 179 VSEIMKLLVEMQK--E-LGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHHHHHH--H-HCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHHHHh--h-CCCEEEEEecCHHHHH
Confidence 7777777776630 0 1334889999887653
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.25 E-value=4.7e-08 Score=102.41 Aligned_cols=95 Identities=16% Similarity=0.053 Sum_probs=59.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhh-----------cc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKR-----------RS 260 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~ 260 (741)
..+++++++.+++| ++|+||||||||||+++|+|.+ .|++........ .+....... ..
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~-----~lf~~ti~~~ni~~~~~~~~~~ 184 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKS-----HFWLASLADTRAALVDDATHAC 184 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTS-----GGGGGGGTTCSCEEEEEECHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcc-----ccccccHHHHhhccCccccHHH
Confidence 56889999999999 7899999999999999999998 455543211000 000000000 00
Q ss_pred cccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIF 304 (741)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILl 304 (741)
...++.. ++.... ...+|||++++ ++|+..+|.||+
T Consensus 185 ~~~i~~~-L~~gld--g~~LSgGqkQR-----ARAll~~p~iLl 220 (305)
T 2v9p_A 185 WRYFDTY-LRNALD--GYPVSIDRKHK-----AAVQIKAPPLLV 220 (305)
T ss_dssp HHHHHHT-TTGGGG--TCCEECCCSSC-----CCCEECCCCEEE
T ss_pred HHHHHHH-hHccCC--ccCcCHHHHHH-----HHHHhCCCCEEE
Confidence 0011110 111111 45789999987 888999999998
No 289
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.23 E-value=6e-07 Score=94.75 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhC----ccEEEEechhhhccccch-HHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLD----ANFLKVVSSAIVDKYIGE-SARLIREMFNYARNHQPCIIFMDEIDAI 595 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~----~~~~~v~~~~l~~~~~g~-s~~~i~~~f~~a~~~~p~Vl~iDE~d~~ 595 (741)
+.+++|+||||||||++|.+++..+. .+++.+..++++..+... .......++.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57899999999999999999998765 567777777665433221 0111122233322 3469999999754
No 290
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.19 E-value=4e-07 Score=98.58 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=31.7
Q ss_pred HhhhCCCCCC--C--ceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 197 FQRVGITPPK--G--CLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 197 ~~~~~l~~~~--G--vlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
...+++.+.+ | ++|+||||||||||+++|+|.+.+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3456777777 6 88999999999999999999998876
No 291
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.18 E-value=3.8e-07 Score=86.29 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=38.6
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
+...+++++++++++| ++|+||||||||||+|+|+|.+ +..+.+..
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 3345778888999999 7899999999999999999999 77666653
No 292
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=98.16 E-value=1.6e-07 Score=96.11 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccc
Q psy11254 16 DYRKKLTEHAEVEGRLREMREQLK---ELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKS 82 (741)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (741)
+.||++||..++.+|++.+...++ ++.+++++|+++|++.+++.||+||| +||+|+|++|||++
T Consensus 185 ~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~L---rEQlk~IqkELGe~ 251 (252)
T 3ljc_A 185 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYL---NEQMKAIQKELGEM 251 (252)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCC
Confidence 468999999999999999999888 88899999999999999999999999 99999999999975
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.16 E-value=1.6e-06 Score=91.18 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=26.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
++|+|||||||||+++.||+.+.+..+++.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 789999999999999999999987766654
No 294
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.15 E-value=1.9e-06 Score=84.09 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=26.9
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCccE
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDANF 552 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~ 552 (741)
++...+++|+||||||||++|.++|+.+....
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 44456799999999999999999999986543
No 295
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.15 E-value=9.2e-07 Score=87.00 Aligned_cols=26 Identities=46% Similarity=0.618 Sum_probs=23.6
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
.+++|+||||||||+|++++++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999998744
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.13 E-value=3.9e-06 Score=84.17 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.9
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||++++++...+.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345677789999999999999999999987554
No 297
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=2.9e-06 Score=97.85 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=38.7
Q ss_pred cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 359 (741)
Q Consensus 298 ~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld 359 (741)
..|.++++||..- ...+++++|+.....+.+++..+-. ....++++++||+.+...
T Consensus 145 ~~p~LlLlDePGi----~~~~t~~LD~~~~~~i~~li~~~l~--~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 145 DVPDLTLIDLPGI----TRVAVGNQPADIGYKIKTLIKKYIQ--RQETISLVVVPSNVDIAT 200 (608)
T ss_dssp SSCCEEEEECCC----------CCSSCSHHHHHHHHHHHHTT--SSSCCEEEEEESSSCTTT
T ss_pred CCCceeEeeCCCc----cccccCCCCHHHHHHHHHHHHHHHh--cCCCCceEEEeccchhcc
Confidence 4589999999210 0012889999888888999887522 145788899999988553
No 298
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.11 E-value=4.4e-06 Score=86.07 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=70.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc--EEEEechhh------------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAI------------------------------------ 560 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~--~~~v~~~~l------------------------------------ 560 (741)
+.+.++..+.|.||||||||||++++++...+. -+.+.+.++
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence 446677889999999999999999999877443 111111100
Q ss_pred -----------------------hccccc--hHHHHHHHHHHHHHhc------CCeEEEEcccccccCCCCCCCCcccHH
Q psy11254 561 -----------------------VDKYIG--ESARLIREMFNYARNH------QPCIIFMDEIDAIGGRRFSEGTSADRE 609 (741)
Q Consensus 561 -----------------------~~~~~g--~s~~~i~~~f~~a~~~------~p~Vl~iDE~d~~~~~r~~~~~~~~~~ 609 (741)
..++++ ..+++-|-.+.+|-.. .|.+|++||..+ +-|..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts----------~LD~~ 181 (266)
T 4g1u_C 112 PYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTS----------ALDLY 181 (266)
T ss_dssp TSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCS----------SCCHH
T ss_pred hcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccc----------cCCHH
Confidence 000000 1122335566666666 899999999665 45667
Q ss_pred HHHHHHHHHHHccCCCCCCCeEEEEeeCCCCC
Q psy11254 610 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 610 ~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ 641 (741)
....+.++|..+.. .++.-||++||+.+.
T Consensus 182 ~~~~i~~~l~~l~~---~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 182 HQQHTLRLLRQLTR---QEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHHHHH---HSSEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHH---cCCCEEEEEEcCHHH
Confidence 77777778776631 124558999998654
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.10 E-value=7.1e-06 Score=83.96 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=28.3
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||+|||||+++|++...+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 446777889999999999999999999987554
No 300
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.10 E-value=5e-06 Score=90.60 Aligned_cols=153 Identities=23% Similarity=0.378 Sum_probs=92.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhC---ccEEEEechhhhcc-------------ccchHHHHHHHHHHHHHhcCCeEEE
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSAIVDK-------------YIGESARLIREMFNYARNHQPCIIF 588 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~---~~~~~v~~~~l~~~-------------~~g~s~~~i~~~f~~a~~~~p~Vl~ 588 (741)
..++++|++|||||++|+++..... .+|+.++++.+... |.|.... ....|..|.. .+||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELADG---GTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEE
Confidence 4589999999999999999988764 68999998765321 1111100 1234555543 5999
Q ss_pred EcccccccCCCCCCCCcccHHHHHHHHHHHHHcc--CCCCC----CCeEEEEeeCCC-------CCCCccccCCCCcc-e
Q psy11254 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD--GFDSL----GQVKMIMATNRP-------DTLDPALLRPGRLD-R 654 (741)
Q Consensus 589 iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~--g~~~~----~~v~vi~tTn~~-------~~ld~al~rpgR~d-~ 654 (741)
|||++.+ ....+..+.++|++-. ...+. -++-||+|||+. ..+.+.+.- |+. .
T Consensus 237 ldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~ 303 (387)
T 1ny5_A 237 LDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVI 303 (387)
T ss_dssp EESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTE
T ss_pred EcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCC
Confidence 9999985 3456777888887632 11111 257799999973 222333332 443 4
Q ss_pred EEEcCCCCH--HHHHHHHHHhhcCcccc-----CCCCcccccccccc
Q psy11254 655 KIEIPLPNE--QARLEILKIHAGPIAKH-----GEIGDAATKWVLPF 694 (741)
Q Consensus 655 ~i~~~~p~~--~~r~~i~~~~~~~~~~~-----~~~~~~a~~~l~~~ 694 (741)
.|++|+... ++...+++.++...... ..++..+...+...
T Consensus 304 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 304 EIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred eecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 567777654 66666777766543211 23555555554433
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.07 E-value=2.6e-05 Score=81.90 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhh
Q psy11254 201 GITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVD 278 (741)
Q Consensus 201 ~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (741)
++...++ ++++||||+||||+++.||+.+.+..+++......... .+.. .....+.+..+++. +.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~a~------eqL~~~~~~~gl~~-----~~ 164 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AAAI------EQLKIWGERVGATV-----IS 164 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HHHH------HHHHHHHHHHTCEE-----EC
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HHHH------HHHHHHHHHcCCcE-----Ee
Confidence 4444445 78999999999999999999987655444321111000 0000 00001111112211 11
Q ss_pred hhcchHHHHH-HHHHHHHHhcCCeEEEecc
Q psy11254 279 KYIGESARLI-REMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 279 ~~~G~~~~~v-~~~~~~A~~~~P~ILllDE 307 (741)
..+|+.++.+ ...+..+...+|+++++|+
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDt 194 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDT 194 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 2344455443 5567788889999999999
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.07 E-value=1.2e-05 Score=81.47 Aligned_cols=130 Identities=22% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHH--HH--hCccEEEEechhhhc------cccc-----------------------
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVA--SQ--LDANFLKVVSSAIVD------KYIG----------------------- 566 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a--~~--~~~~~~~v~~~~l~~------~~~g----------------------- 566 (741)
++.++.-++|+||||+|||||++.++ .. .+...+.+....... ..+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 67888889999999999999999998 44 122333332211000 0000
Q ss_pred -------------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEE
Q psy11254 567 -------------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 633 (741)
Q Consensus 567 -------------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi 633 (741)
........+........|.++++||+.++..... ......+.+..++..+.. .++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 0122233444444567899999999988753210 112334446666666532 145588
Q ss_pred EeeCCCCCCC-----ccccCCCCc-ceEEEcCC
Q psy11254 634 MATNRPDTLD-----PALLRPGRL-DRKIEIPL 660 (741)
Q Consensus 634 ~tTn~~~~ld-----~al~rpgR~-d~~i~~~~ 660 (741)
++||..+... +.+.+ -. |.++.+..
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 8998877652 22222 35 78877743
No 303
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.06 E-value=5.5e-06 Score=82.38 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=27.9
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||+|||||++++++...+.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345677889999999999999999999987543
No 304
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.06 E-value=8.2e-06 Score=83.81 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=28.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||++++++.+.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 446777889999999999999999999987554
No 305
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.05 E-value=1.2e-05 Score=81.36 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||++++++...+.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 446778889999999999999999999877543
No 306
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.04 E-value=8.4e-06 Score=87.22 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=71.1
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhhh-----------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAIV----------------------------------- 561 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l~----------------------------------- 561 (741)
+.+.++.-+.|.||||||||||+++|++...+.-..+ .+.++.
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 4567778899999999999999999999876543222 111110
Q ss_pred -----------------------------ccccc--hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHH
Q psy11254 562 -----------------------------DKYIG--ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 610 (741)
Q Consensus 562 -----------------------------~~~~g--~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~ 610 (741)
..|++ ..+++-|-.+.+|....|.||++||..+ +-|+..
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs----------~LD~~~ 198 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS----------ALDPAT 198 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT----------TSCHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc----------cCCHHH
Confidence 00000 1122224555566667899999999665 456777
Q ss_pred HHHHHHHHHHccCCCCCCCeEEEEeeCCCCC
Q psy11254 611 QRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 611 ~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ 641 (741)
...+.++|..+.. ..++-||++||+.+.
T Consensus 199 ~~~i~~lL~~l~~---~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 199 TRSILELLKDINR---RLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHHHHHHH---HSCCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHH---hCCCEEEEEecCHHH
Confidence 7778888877631 113458889988653
No 307
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.03 E-value=2e-07 Score=98.05 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=20.7
Q ss_pred hhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHh-cCCC
Q psy11254 187 IELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ-LDAN 232 (741)
Q Consensus 187 i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~-l~~~ 232 (741)
+...+++..+++++++++ +|+||||+|||||++.|+|. +.+.
T Consensus 4 l~~~~~~~~~l~~~~~~I----~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL----MVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp --------------CEEE----EEEEETTSSHHHHHHHHHC------
T ss_pred CcceECCEEEEcCCCEEE----EEECCCCCCHHHHHHHHhCCCccCC
Confidence 334455566677766654 89999999999999999986 5443
No 308
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.03 E-value=2.8e-05 Score=82.96 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=83.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh--------------------------------ccc--------
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV--------------------------------DKY-------- 564 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~--------------------------------~~~-------- 564 (741)
..++++||+|+|||++++.+++..+...+.++..... ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4689999999999999999999887666666554320 000
Q ss_pred ---cch---HHHHHHHHHHHHHhc--CCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEee
Q psy11254 565 ---IGE---SARLIREMFNYARNH--QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMAT 636 (741)
Q Consensus 565 ---~g~---s~~~i~~~f~~a~~~--~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tT 636 (741)
.+. ....+..+++..... .|.+|+|||++.+.... .......+..+.+.. .++.+|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAYDNL------KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHHHHC------TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHHHcC------CCeEEEEEc
Confidence 000 011233444444332 38999999999875310 011233444444432 256677777
Q ss_pred CCCCCC-------C--ccccCCCCcceEEEcCCCCHHHHHHHHHHhhc
Q psy11254 637 NRPDTL-------D--PALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 637 n~~~~l-------d--~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~ 675 (741)
+....+ + ..+ .||+...+.+++++.++..+++...+.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHH
Confidence 643211 1 122 257778999999999999999987654
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.03 E-value=5.4e-06 Score=88.88 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
++|+||||+|||||+..++....
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999987653
No 310
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.03 E-value=5e-06 Score=81.65 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=47.6
Q ss_pred cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecCCC
Q psy11254 298 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLP 377 (741)
Q Consensus 298 ~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~~p 377 (741)
..++||+|||++.+.+.+..... . ..++..+.. ....++.+|++|+.++.++..++. |++..+.+..|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~-------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--I-------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--C-------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccch--h-------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 34779999999999765422111 1 124444442 334577899999999999999876 89888887665
Q ss_pred C
Q psy11254 378 N 378 (741)
Q Consensus 378 ~ 378 (741)
.
T Consensus 154 ~ 154 (199)
T 2r2a_A 154 K 154 (199)
T ss_dssp S
T ss_pred c
Confidence 4
No 311
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.01 E-value=1.2e-05 Score=87.45 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCeEEEeccccccccccCCCCCCccHHH--HHHHHHHHHhccCCCCCCCeEEEEeeCCCCCC
Q psy11254 290 EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI--QRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 358 (741)
Q Consensus 290 ~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~--~~~l~~lL~~l~~~~~~~~v~vI~at~~~~~l 358 (741)
.+...+...+|.+|+||++-.+.....+...++.... ...+...|..+.. ..+++||+++|.....
T Consensus 264 ~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lak---e~gitVIlv~Hv~~~~ 331 (400)
T 3lda_A 264 AAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLAD---QFGVAVVVTNQVVAQV 331 (400)
T ss_dssp HHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHH---HHCCEEEEEEEC----
T ss_pred HHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHH---HcCCEEEEEEeecccC
Confidence 3444445578999999998777653221111111111 1334444444432 3478999999965433
No 312
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.99 E-value=0.00011 Score=77.94 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=81.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechhhh------------c---cccc-----------------------
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV------------D---KYIG----------------------- 566 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l~------------~---~~~g----------------------- 566 (741)
..++++||+|+|||++++.+++..+ .+.++..... . ..++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5689999999999999999998875 4444433211 0 0000
Q ss_pred --hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC----
Q psy11254 567 --ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD---- 640 (741)
Q Consensus 567 --~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~---- 640 (741)
.....+..+.+.+....|.+|+|||++.+.... ...+......+..+++.. .++.+|+|+....
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHH
Confidence 011122223233332348999999999875310 011233445555555442 2566777765421
Q ss_pred -----CCCccccCCCCcceEEEcCCCCHHHHHHHHHHhhc
Q psy11254 641 -----TLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675 (741)
Q Consensus 641 -----~ld~al~rpgR~d~~i~~~~p~~~~r~~i~~~~~~ 675 (741)
.....+. ||+...+++++++.++..++++..+.
T Consensus 180 ~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 180 FLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp HHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 1112222 57778999999999999999987654
No 313
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.99 E-value=1.8e-05 Score=85.24 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=73.4
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhh------------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAI------------------------------------ 560 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l------------------------------------ 560 (741)
+.+.++.-+.|.||||||||||+++|++...+.-..+ .+.++
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 4466778899999999999999999999886542222 11110
Q ss_pred -----------------------hccccc--hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHH
Q psy11254 561 -----------------------VDKYIG--ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM 615 (741)
Q Consensus 561 -----------------------~~~~~g--~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~ 615 (741)
.++++. ..+++-|-.+.+|....|.||++||.-+ +-|...+..+.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts----------~LD~~~~~~l~ 173 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS----------NLDAALRVQMR 173 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT----------TSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc----------CCCHHHHHHHH
Confidence 000111 1122224555666667899999999665 34555566666
Q ss_pred HHHHHccCCCCCCCeEEEEeeCCCCC----CCc-cccCCCCc
Q psy11254 616 ELLNQMDGFDSLGQVKMIMATNRPDT----LDP-ALLRPGRL 652 (741)
Q Consensus 616 ~lL~~~~g~~~~~~v~vi~tTn~~~~----ld~-al~rpgR~ 652 (741)
.+|..+.. ..++-+|++|++.+. .|. .+++-||+
T Consensus 174 ~~l~~l~~---~~g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 174 IEISRLHK---RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHHHH---HHCCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHH---hCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 66655521 112348889988653 343 44666654
No 314
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.99 E-value=1.4e-05 Score=80.83 Aligned_cols=112 Identities=18% Similarity=0.131 Sum_probs=68.5
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEe--------ch----------h-h--hc---------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV--------SS----------A-I--VD--------------- 562 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~--------~~----------~-l--~~--------------- 562 (741)
+.+.++..+.|+||||||||||+++|++.+.+.-..+. .. + + ..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 105 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACA 105 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTT
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHh
Confidence 45677888999999999999999999998754311110 00 0 0 00
Q ss_pred -----------------cccc--hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccC
Q psy11254 563 -----------------KYIG--ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 623 (741)
Q Consensus 563 -----------------~~~g--~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g 623 (741)
+.+. ..+++-|-.+.+|-...|.+|++||..+ +-|......+.++|.....
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~~~ 175 (237)
T 2cbz_A 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS----------AVDAHVGKHIFENVIGPKG 175 (237)
T ss_dssp CHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT----------TSCHHHHHHHHHHTTSTTS
T ss_pred hHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc----------ccCHHHHHHHHHHHHHHHh
Confidence 0000 1123334556666667899999999665 4566666666666632122
Q ss_pred CCCCCCeEEEEeeCCCCCC
Q psy11254 624 FDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 624 ~~~~~~v~vi~tTn~~~~l 642 (741)
.. .+..||++|++++.+
T Consensus 176 ~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 176 ML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp TT--TTSEEEEECSCSTTG
T ss_pred hc--CCCEEEEEecChHHH
Confidence 21 134588888887654
No 315
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.99 E-value=2.4e-05 Score=79.26 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=27.4
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.+ ..+.|.||||||||||++++++...+.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44667 788999999999999999999987654
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.98 E-value=1.6e-05 Score=81.13 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=68.8
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--------ech-----------h-h-hcc--c------cc-hH
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--------VSS-----------A-I-VDK--Y------IG-ES 568 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--------~~~-----------~-l-~~~--~------~g-~s 568 (741)
+.+.++..+.|.||||+|||||++++++...+.-..+ ... + + ... + .. +.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 105 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence 3456778899999999999999999999875432222 000 0 0 000 0 00 11
Q ss_pred HHHH--------------------------HHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHcc
Q psy11254 569 ARLI--------------------------REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622 (741)
Q Consensus 569 ~~~i--------------------------~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~ 622 (741)
...+ +-.+..|-...|.+|++||..+ +-|......+.++|..+.
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS----------ALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST----------TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH
Confidence 1112 3445555567899999999665 456677777888887763
Q ss_pred CCCCCCCeEEEEeeCCCCC
Q psy11254 623 GFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 623 g~~~~~~v~vi~tTn~~~~ 641 (741)
. ..+..||++||+.+.
T Consensus 176 ~---~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 176 Q---SQNMTVVFTTHQPNQ 191 (253)
T ss_dssp H---TSCCEEEEEESCHHH
T ss_pred H---hcCCEEEEEecCHHH
Confidence 1 113347888988654
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.96 E-value=3e-06 Score=91.44 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
+++++++.+++| ++|+||||||||||+++|++.+.+..+.+..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 457777777777 8899999999999999999999887777754
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.96 E-value=1.9e-05 Score=84.40 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=28.3
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++.-+.|.||||||||||+++|++...+.
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 446677889999999999999999999987554
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.95 E-value=1.4e-05 Score=81.28 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.1
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||+++|++.+.+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 446677889999999999999999999987543
No 320
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.95 E-value=2.1e-06 Score=90.52 Aligned_cols=26 Identities=46% Similarity=0.709 Sum_probs=23.5
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcC
Q psy11254 205 PKGCLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 205 ~~GvlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
..+++|+||||||||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998775
No 321
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.95 E-value=1.8e-05 Score=82.06 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=27.8
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||+++|++.+.+.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 345677889999999999999999999987543
No 322
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.95 E-value=2.7e-05 Score=78.89 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=27.7
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||+|||||++++++...+.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345677789999999999999999999987543
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.94 E-value=2.2e-05 Score=83.93 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=27.9
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++.-+.|.||||||||||+++|++...+.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 345677789999999999999999999987544
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.94 E-value=2.8e-05 Score=83.34 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+..+.-+.|.||||||||||+++|++...+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 446677889999999999999999999987543
No 325
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.94 E-value=4.9e-05 Score=74.98 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEEeecccCcccchhhHHhhhhccccc
Q psy11254 17 YRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDKSENDLKALQSVGQVS 96 (741)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (741)
+++...++..+..+.+++.+.++++.++..+++++++.+++.|+. ++++++.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~------iGtvlev~dd~------------------ 111 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG------YGVLLATHDDD------------------ 111 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE------EEEEEEECSSS------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce------EEEEEEEcCCC------------------
Confidence 334446667777888888889999999999999999999999998 89999998776
Q ss_pred cccccccceEEEEecCCCCeeEEeecccccccCCCCCCEEEeccchhhhhhcCCCccCccc
Q psy11254 97 LSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLV 157 (741)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (741)
+++++ ++++++++.++..++...|+||++|.++ .++++++.+|.+....+
T Consensus 112 ---------~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~Gev 161 (251)
T 3m9b_A 112 ---------TVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVGEI 161 (251)
T ss_dssp ---------CEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCSEE
T ss_pred ---------EEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcccE
Confidence 56777 5789999999999999999999999996 59999998888755433
No 326
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.93 E-value=2.1e-05 Score=84.71 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=27.9
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+..+.-+.|.||||||||||+++|++...+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 345677789999999999999999999987544
No 327
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.93 E-value=2e-05 Score=80.92 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||++++++.+.+.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 446677889999999999999999999987544
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.92 E-value=1.6e-07 Score=93.14 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
++|+||||||||||+++|++.+++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999874
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.92 E-value=3e-05 Score=83.17 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=28.1
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+..+.-+.|.||||||||||+++|++...+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 445677789999999999999999999987554
No 330
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.92 E-value=2.4e-05 Score=80.23 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=27.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhC
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLD 549 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~ 549 (741)
+.+.++..+.|.||||+|||||+++|++.+.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567788899999999999999999998764
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.90 E-value=3.2e-05 Score=77.15 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=26.5
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHhC
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQLD 549 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~ 549 (741)
|+.++.-++|+|||||||||+++.+++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577788899999999999999999998553
No 332
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.89 E-value=8e-05 Score=77.84 Aligned_cols=130 Identities=18% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHhhccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhh-HHHHHhhhhhhh
Q psy11254 182 ELREVIELPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKE-DMAILMGNQLKR 258 (741)
Q Consensus 182 ~i~e~i~~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 258 (741)
-+.+.+...+.... +++++. +| ++++|+||+||||+++.+|+.+....+++.......... ....+.
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~------ 146 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR------ 146 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH------
Confidence 34444444343321 456666 44 778999999999999999999876555553321111000 000000
Q ss_pred cccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhc
Q psy11254 259 RSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 337 (741)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l 337 (741)
.+.+..++....... . .......+.+++.+...+++++++|+. |+.+.|......+..+...+
T Consensus 147 ---~~~~~~~l~~~~~~~-~---~~p~~l~~~~l~~~~~~~~D~viiDtp---------p~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 147 ---LLGEKVGVPVLEVMD-G---ESPESIRRRVEEKARLEARDLILVDTA---------GRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp ---HHHHHHTCCEEECCT-T---CCHHHHHHHHHHHHHHHTCCEEEEECC---------CCSSCCHHHHHHHHHHHHHH
T ss_pred ---HhcccCCeEEEEcCC-C---CCHHHHHHHHHHHHHhCCCCEEEEeCC---------CCccccHHHHHHHHHHhhhc
Confidence 001111111110000 0 001122355788887788999999992 36777876666666665544
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.89 E-value=4.2e-05 Score=78.47 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=68.5
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhh--------hccccc----------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAI--------VDKYIG---------------------- 566 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l--------~~~~~g---------------------- 566 (741)
+.+. +..+.|.||||+|||||++++++.. +.-..+ .+.++ ++.|+.
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~ 103 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL 103 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCC
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcch
Confidence 4567 7889999999999999999999987 542222 11110 000110
Q ss_pred --------------------------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHH
Q psy11254 567 --------------------------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 620 (741)
Q Consensus 567 --------------------------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~ 620 (741)
..+++-|-.+..|....|.+|++||..+ +-|......+.++|..
T Consensus 104 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 104 DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE----------NVDAARRHVISRYIKE 173 (263)
T ss_dssp CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT----------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc----------ccCHHHHHHHHHHHHH
Confidence 0112223344455556889999999665 4677778888888888
Q ss_pred ccCCCCCCCeEEEEeeCCCCCC
Q psy11254 621 MDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 621 ~~g~~~~~~v~vi~tTn~~~~l 642 (741)
+.. .||++||+++.+
T Consensus 174 ~~~-------tviivtHd~~~~ 188 (263)
T 2pjz_A 174 YGK-------EGILVTHELDML 188 (263)
T ss_dssp SCS-------EEEEEESCGGGG
T ss_pred hcC-------cEEEEEcCHHHH
Confidence 743 488889886543
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.89 E-value=5.3e-05 Score=77.95 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=27.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDA 550 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~ 550 (741)
+.+.++..+.|.||||+|||||+++|++...+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 45677888999999999999999999987754
No 335
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.88 E-value=8.9e-06 Score=96.15 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=78.2
Q ss_pred hhhcccccccccccCCC-ccchhhhhcchHHHHHHHHHHHHHhcCC--eEEEeccccccccccCCCCCCccHHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPFY-SSAIVDKYIGESARLIREMFNYARNHQP--CIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~~-~~~~~~~~~G~~~~~v~~~~~~A~~~~P--~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~ 332 (741)
+.+++. .+..+++... ....+.++|||+.|++ .+++++..+| .+++||| |++++|+....+|.+
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV--~LA~aL~~~p~~~llILDE----------PT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRL--RLATQLYSNLFGVVYVLDE----------PSAGLHPADTEALLS 422 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHH--HHHHHTTTCCCSCEEEEEC----------TTTTCCGGGHHHHHH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHH--HHHHHHhhCCCCeEEEeeC----------ccccCCHHHHHHHHH
Confidence 445554 4667777643 6888999999999999 9999999998 4999999 999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 333 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 333 lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
++..+.. .+.+||+++|+++.++ ..|+.+.+.
T Consensus 423 ~l~~L~~----~G~TVIvVeHdl~~l~-------~aD~ii~lg 454 (842)
T 2vf7_A 423 ALENLKR----GGNSLFVVEHDLDVIR-------RADWLVDVG 454 (842)
T ss_dssp HHHHHHT----TTCEEEEECCCHHHHT-------TCSEEEEEC
T ss_pred HHHHHHH----cCCEEEEEcCCHHHHH-------hCCEEEEeC
Confidence 9999864 4679999999997654 346666663
No 336
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.88 E-value=3.8e-05 Score=78.27 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.8
Q ss_pred HHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 576 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 576 f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
+..|....|.+|++||..+ +-|......+.++|..+.. .+..||++||+++.+
T Consensus 154 iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDS----------GLDIDALKVVARGVNAMRG----PNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHCCSEEEEECGGG----------TTCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGGG
T ss_pred HHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHHH
Confidence 3344445788999999776 3566777888888887742 134578889886643
No 337
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.88 E-value=6.1e-06 Score=97.88 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=77.8
Q ss_pred hhhcccccccccccCC-CccchhhhhcchHHHHHHHHHHHHHhcC--CeEEEeccccccccccCCCCCCccHHHHHHHHH
Q psy11254 256 LKRRSTHHLEKTYFPF-YSSAIVDKYIGESARLIREMFNYARNHQ--PCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 332 (741)
Q Consensus 256 ~~~~~~~~l~~~~~~~-~~~~~~~~~~G~~~~~v~~~~~~A~~~~--P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~ 332 (741)
+.+++ ..+..+|+.. ..+..+.++|||+.|++ .++.++..+ |.+|+||| |++++|+....+|.+
T Consensus 481 i~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV--~LA~aL~~~~~~~llILDE----------PTagLdp~~~~~L~~ 547 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRI--RLATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIA 547 (972)
T ss_dssp HHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHH--HHHHHHTTCCCSCEEEEEC----------TTTTCCGGGHHHHHH
T ss_pred HHHHH-HHhhhCCCCccccCCccccCCHHHHHHH--HHHHHHhhCCCCCEEEEeC----------cccCCCHHHHHHHHH
Confidence 34444 3467778764 36888999999999999 999999987 48999999 999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEeeCCCCCCCccccCCCccceeeecC
Q psy11254 333 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375 (741)
Q Consensus 333 lL~~l~~~~~~~~v~vI~at~~~~~ld~al~r~gr~d~~i~~~ 375 (741)
+|..+.. .+.+||+++|+++.+. ..|+.+.+.
T Consensus 548 ~L~~Lr~----~G~TVIvVeHdl~~i~-------~ADrIi~Lg 579 (972)
T 2r6f_A 548 TLKSMRD----LGNTLIVVEHDEDTML-------AADYLIDIG 579 (972)
T ss_dssp HHHHHHT----TTCEEEEECCCHHHHH-------SCSEEEEEC
T ss_pred HHHHHHh----CCCEEEEEecCHHHHH-------hCCEEEEeC
Confidence 9999864 4679999999987653 346666663
No 338
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.87 E-value=0.00016 Score=71.54 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEec
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 557 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~ 557 (741)
|+.++.-++++||||+||||++..++...+...+.++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 57788889999999999999999999844555555544
No 339
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.87 E-value=4.5e-05 Score=78.67 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||+++|++.+.+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 446778889999999999999999999987543
No 340
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.87 E-value=5.1e-05 Score=81.93 Aligned_cols=154 Identities=21% Similarity=0.345 Sum_probs=94.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCcc--EEEEechhhhcccc-------------chHHHHHHHHHHHHHhcCCeEEEE
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAIVDKYI-------------GESARLIREMFNYARNHQPCIIFM 589 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~--~~~v~~~~l~~~~~-------------g~s~~~i~~~f~~a~~~~p~Vl~i 589 (741)
..++++|++||||+++|+++....+.. |+.++++.+-.... |... .-...|..|.+ ..|||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~---gtlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQ---GTLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTT---SEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCC---CeEEe
Confidence 458999999999999999999877543 99999886532211 1000 01124555544 48999
Q ss_pred cccccccCCCCCCCCcccHHHHHHHHHHHHHccC--CCCC----CCeEEEEeeCCC-------CCCCccccCCCCcce-E
Q psy11254 590 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG--FDSL----GQVKMIMATNRP-------DTLDPALLRPGRLDR-K 655 (741)
Q Consensus 590 DE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g--~~~~----~~v~vi~tTn~~-------~~ld~al~rpgR~d~-~ 655 (741)
||++.+ ....+..+..+|+.-.- +.+. -++-+|+|||.. ..+.+.+.. |+.. .
T Consensus 229 dei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~ 295 (368)
T 3dzd_A 229 DEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQ 295 (368)
T ss_dssp ETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEE
T ss_pred cChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeE
Confidence 999986 34567777788875321 1111 146699999863 122222322 4433 5
Q ss_pred EEcCCCCH--HHHHHHHHHhhcCcccc-----CCCCccccccccccc
Q psy11254 656 IEIPLPNE--QARLEILKIHAGPIAKH-----GEIGDAATKWVLPFT 695 (741)
Q Consensus 656 i~~~~p~~--~~r~~i~~~~~~~~~~~-----~~~~~~a~~~l~~~~ 695 (741)
|++|+... ++...+.+.++...... ..+++.+...+....
T Consensus 296 i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 296 IYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 88888877 67777777777644321 235555555554443
No 341
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.86 E-value=2.1e-05 Score=80.75 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=51.4
Q ss_pred HHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc---EEEEechhh--h---------ccccchHHHHHHHHHHHHH
Q psy11254 515 LFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN---FLKVVSSAI--V---------DKYIGESARLIREMFNYAR 580 (741)
Q Consensus 515 ~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~---~~~v~~~~l--~---------~~~~g~s~~~i~~~f~~a~ 580 (741)
.++++.+.++..++++|||||||||+++++++.+.+. -+.+....+ + ...+|.....++..+..+.
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 4555667777789999999999999999999987543 222222111 0 0011111123466677777
Q ss_pred hcCCeEEEEcccc
Q psy11254 581 NHQPCIIFMDEID 593 (741)
Q Consensus 581 ~~~p~Vl~iDE~d 593 (741)
...|.+|++||+.
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 7789999999974
No 342
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.86 E-value=2.2e-05 Score=84.05 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=28.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+..+.-+.|.||||||||||+++|++...+.
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 446677889999999999999999999987543
No 343
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.85 E-value=0.00015 Score=77.12 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=40.6
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
....+.|-++..+.|.+ +.- +.++++||+|+|||+|++.++...+.....+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 45668899998888887 531 357899999999999999999987655444443
No 344
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.85 E-value=2e-05 Score=84.08 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=73.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhhh-----------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAIV----------------------------------- 561 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l~----------------------------------- 561 (741)
+.+.++.-+.|.||||||||||+++|++...+.-..+ ++.++.
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 4466778899999999999999999999875542222 111100
Q ss_pred ---------------------ccccc--hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHH
Q psy11254 562 ---------------------DKYIG--ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 618 (741)
Q Consensus 562 ---------------------~~~~g--~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL 618 (741)
.++++ ..+++-|-.+.+|....|.+|++||.-+ +-|...+..+..+|
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s----------~LD~~~~~~l~~~l 170 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS----------ALDPRTQENAREML 170 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST----------TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHH
Confidence 00000 0112224445555567899999999665 35666677777777
Q ss_pred HHccCCCCCCCeEEEEeeCCCCC----CCc-cccCCCCc
Q psy11254 619 NQMDGFDSLGQVKMIMATNRPDT----LDP-ALLRPGRL 652 (741)
Q Consensus 619 ~~~~g~~~~~~v~vi~tTn~~~~----ld~-al~rpgR~ 652 (741)
..+.. ..+..+|++||+.+. .|. .++.-||+
T Consensus 171 ~~l~~---~~g~tii~vTHd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 171 SVLHK---KNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp HHHHH---HTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred HHHHH---hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 66531 113448888887653 343 34566664
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.85 E-value=7.4e-05 Score=82.69 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=34.3
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
++++|.+.+| ++|+||||||||||+++|+|.+.+..+++..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 3567778888 7799999999999999999999877666654
No 346
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.85 E-value=6.4e-06 Score=78.86 Aligned_cols=122 Identities=15% Similarity=0.217 Sum_probs=61.7
Q ss_pred CCCCCCceEEEcCCCCChHHHHH------------HHHHHhCccEEEE--ech------------------hhh-ccccc
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLAR------------AVASQLDANFLKV--VSS------------------AIV-DKYIG 566 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~------------~~a~~~~~~~~~v--~~~------------------~l~-~~~~g 566 (741)
.+.++.-++|+|||||||||+++ .+.+....+.... ... .+. ..+..
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQ 84 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCS
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence 34566778999999999999999 5555442211000 000 000 01112
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---CCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 567 ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSE---GTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 567 ~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~---~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
...+.-+..+..+....|.+|++||..+-+..+... ..-....+.....++.+.+..+... +.-+|++||+++.+
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 233333445555666789999999987654222100 0001111222333334433333222 34478888876654
No 347
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.84 E-value=3.5e-05 Score=80.76 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=28.7
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|+||||||||||+++|++.+.+.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 456788889999999999999999999987554
No 348
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.84 E-value=6.4e-05 Score=76.96 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 574 EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 574 ~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
-.+..|-...|.+|++||..+ +-|......+.++|..+.. . +..||++||+.+.+
T Consensus 162 v~iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIA----------GVAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred HHHHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 344445556899999999665 4567777888888877631 1 34588899987765
No 349
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.83 E-value=3.3e-05 Score=78.59 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.3
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||+|||||++++++.+.+.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 345677889999999999999999999987654
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.83 E-value=1.9e-05 Score=85.04 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+..+.-+.|.||||||||||+++|++...+.
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 446677889999999999999999999987543
No 351
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.83 E-value=5.5e-05 Score=75.45 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
|+.++.-++|+||||+||||+++.++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46777889999999999999999999654
No 352
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=3.4e-05 Score=82.49 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
+++| ++|+||||||||||+..++..+...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445 7899999999999999999886543
No 353
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=2e-06 Score=94.27 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC
Q psy11254 191 LLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 191 ~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
+....++++++|. ++|+||||+|||||+++|+|...
T Consensus 21 y~~~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 21 VYRKSVKRGFEFT----LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTTTTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCCC
T ss_pred ECCEEEecCCCEE----EEEECCCCCcHHHHHHHHhCCCC
Confidence 3444455655555 48999999999999999999764
No 354
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.78 E-value=5e-05 Score=76.45 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=53.4
Q ss_pred ChHHHHhc--CCCCCCceEEEcCCCCChHHHHHHHHHH--h-------CccEEEEechhh------hc--cccc------
Q psy11254 512 NPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQ--L-------DANFLKVVSSAI------VD--KYIG------ 566 (741)
Q Consensus 512 ~~~~~~~~--~~~~~~~~ll~G~~G~GKt~l~~~~a~~--~-------~~~~~~v~~~~l------~~--~~~g------ 566 (741)
.+.+-.-+ |++++.-++|+||||+||||++..++.. . +...+.++..+. .. ..+|
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 89 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV 89 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHH
Confidence 34444444 5777888999999999999999999985 3 234555544331 00 0000
Q ss_pred ----------hHH---HHHHHHHHHHHhcCCeEEEEcccccccCC
Q psy11254 567 ----------ESA---RLIREMFNYARNHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 567 ----------~s~---~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~ 598 (741)
... ..+..+.+......|.+++|||+..+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 90 LDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred hhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011 12233444555567999999999987643
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.74 E-value=1.1e-05 Score=80.50 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=22.9
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
...+++++|++++| ++|+||||||||||+++|+|.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678899999999 7899999999999999999987
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.74 E-value=5.6e-05 Score=81.86 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=68.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--ech--------------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSS-------------------------------------- 558 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~-------------------------------------- 558 (741)
+.+.++..+.|.||||||||||+++|++... +-..+ .+.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~ 120 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcccc
Confidence 4567788899999999999999999998653 21111 110
Q ss_pred ---------------hhhccccc-------------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHH
Q psy11254 559 ---------------AIVDKYIG-------------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 610 (741)
Q Consensus 559 ---------------~l~~~~~g-------------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~ 610 (741)
++...++. ..++.-|-.+.+|....|.||++||.-+- -|...
T Consensus 121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~----------LD~~~ 190 (390)
T 3gd7_A 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH----------LDPVT 190 (390)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHH----------SCHHH
T ss_pred CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHH
Confidence 01111221 12344455667777788999999997763 45556
Q ss_pred HHHHHHHHHHccCCCCCCCeEEEEeeCCCCC
Q psy11254 611 QRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 611 ~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ 641 (741)
+..+..+|..+. .+..+|++||+.+.
T Consensus 191 ~~~l~~~l~~~~-----~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 191 YQIIRRTLKQAF-----ADCTVILCEARIEA 216 (390)
T ss_dssp HHHHHHHHHTTT-----TTSCEEEECSSSGG
T ss_pred HHHHHHHHHHHh-----CCCEEEEEEcCHHH
Confidence 666667776542 13458888887643
No 357
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.72 E-value=6.6e-05 Score=75.68 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
-+++| ++|+||||+|||||+..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455 7899999999999988776554
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.72 E-value=4.2e-05 Score=82.03 Aligned_cols=108 Identities=22% Similarity=0.299 Sum_probs=65.0
Q ss_pred HHHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc----EEEEe-chhhhc---------cccchHHHHHHHHHHHH
Q psy11254 514 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN----FLKVV-SSAIVD---------KYIGESARLIREMFNYA 579 (741)
Q Consensus 514 ~~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~----~~~v~-~~~l~~---------~~~g~s~~~i~~~f~~a 579 (741)
+.+.++...++..++++|||||||||+++++++.+.++ .+.+. +.++.. ..++.........+..|
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH
Confidence 34555544555678999999999999999999887532 22221 111110 11111112345577888
Q ss_pred HhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 580 RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 580 ~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
....|.||++||+- +.+....+.++.. . +..||+||+..+.+
T Consensus 193 L~~~PdvillDEp~-------------d~e~~~~~~~~~~--~------G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMR-------------DLETIRLALTAAE--T------GHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCC-------------SHHHHHHHHHHHH--T------TCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCC-------------CHHHHHHHHHHHh--c------CCEEEEEEccChHH
Confidence 88999999999974 1233333333322 1 23488898886654
No 359
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.71 E-value=8.3e-05 Score=79.46 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=72.0
Q ss_pred ccCCChHHHHhcC---CCCCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhc----------------ccc
Q psy11254 508 LPLLNPELFQRVG---ITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVD----------------KYI 565 (741)
Q Consensus 508 ~~~~~~~~~~~~~---~~~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~----------------~~~ 565 (741)
.+...+++..-++ +.++.-++|+||||||||||+..++... +...+.++..+... ...
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~ 121 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQP 121 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECC
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhc
Confidence 3444555555443 6677779999999999999999998775 34455555443211 011
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcccccccCC-CCC--CCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCC
Q psy11254 566 GESARLIREMFNYARNHQPCIIFMDEIDAIGGR-RFS--EGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR 638 (741)
Q Consensus 566 g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~-r~~--~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~ 638 (741)
...+..+..+-...+...|.++++|.+..+.+. ... .+........+.+.++|..+..+....++.||++.+-
T Consensus 122 ~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 122 DHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp SSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred cCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 122233333333344567899999999988752 111 1111111223445555554444333335556665433
No 360
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=3.1e-05 Score=82.91 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhc----cccc------------hHHHHHHHHHHHHH
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVD----KYIG------------ESARLIREMFNYAR 580 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~----~~~g------------~s~~~i~~~f~~a~ 580 (741)
|+++++-++++||||+||||++..++... +...+.++...-.. ..+| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 46677789999999999999999888654 33444444332111 0111 12233333333444
Q ss_pred hcCCeEEEEcccccccC
Q psy11254 581 NHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 581 ~~~p~Vl~iDE~d~~~~ 597 (741)
...|.+|++|++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999874
No 361
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.69 E-value=3.8e-05 Score=77.95 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhC
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLD 549 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~ 549 (741)
+.+.++..+.|.||||||||||+++|++...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4467788899999999999999999998764
No 362
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=1.9e-05 Score=77.49 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=26.7
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
...+++++|.+++| ++|+|||||||||+++.|++.++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 34667888888877 8899999999999999999999876644
No 363
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.67 E-value=4.6e-05 Score=84.76 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
.++.+...+++| ++|.|+||+|||||+..+|.....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344443345566 889999999999999999987643
No 364
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.66 E-value=9.9e-06 Score=79.74 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 196 LFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 196 ~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
.+.+ +++.+| ++|+|+||+|||||+++++|..
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 667777 8899999999999999999866
No 365
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.66 E-value=8.9e-05 Score=74.47 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.2
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.+.++..+.|.||||||||||++++++.+.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 445677889999999999999999999987543
No 366
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.65 E-value=8.6e-05 Score=78.64 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
++| ++|+|||||||||+++.||+.+.+..+++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 455 7899999999999999999999877666643
No 367
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.64 E-value=6.3e-05 Score=86.30 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=75.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhhh-----------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAIV----------------------------------- 561 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l~----------------------------------- 561 (741)
+.++++..+.++||||+||||+++++++.+.+.-..+ ++.++.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 441 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT 441 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC
Confidence 4567888899999999999999999999876542222 111100
Q ss_pred -------------------ccc-------cc------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHH
Q psy11254 562 -------------------DKY-------IG------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 609 (741)
Q Consensus 562 -------------------~~~-------~g------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~ 609 (741)
..+ +| ..+++-|-.+.+|-..+|.|+++||+.+ +-|..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts----------~LD~~ 511 (578)
T 4a82_A 442 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS----------ALDLE 511 (578)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTT----------TCCHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc----------cCCHH
Confidence 000 00 1123334455566667899999999765 35666
Q ss_pred HHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCCccccCCCCcceEEEcC
Q psy11254 610 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 659 (741)
Q Consensus 610 ~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld~al~rpgR~d~~i~~~ 659 (741)
..+.+.+++..+.. +..+|+.||+++.+ + ..|+++.+.
T Consensus 512 ~~~~i~~~l~~~~~-----~~t~i~itH~l~~~-----~--~~d~i~~l~ 549 (578)
T 4a82_A 512 SESIIQEALDVLSK-----DRTTLIVAHRLSTI-----T--HADKIVVIE 549 (578)
T ss_dssp HHHHHHHHHHHHTT-----TSEEEEECSSGGGT-----T--TCSEEEEEE
T ss_pred HHHHHHHHHHHHcC-----CCEEEEEecCHHHH-----H--cCCEEEEEE
Confidence 67777777776632 23477789987654 2 356655553
No 368
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.63 E-value=0.0014 Score=69.29 Aligned_cols=47 Identities=30% Similarity=0.235 Sum_probs=38.3
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcC
Q psy11254 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 169 ~~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
.-..+.|-++..++|.+.+.- + +.++++||+|+|||||++.++...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 345688999999998887642 1 3588999999999999999998864
No 369
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.63 E-value=0.00012 Score=84.28 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=72.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhh------------------------------------
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAI------------------------------------ 560 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l------------------------------------ 560 (741)
+.++++..+.++||||+||||+++++++.+.+.-..+ ++.++
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 455 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC
Confidence 4577888899999999999999999999876542222 11100
Q ss_pred ------------------hccc-------cc------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHH
Q psy11254 561 ------------------VDKY-------IG------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 609 (741)
Q Consensus 561 ------------------~~~~-------~g------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~ 609 (741)
+..+ +| ..+++-|-.+.+|-...|.||++||+.+ +-|..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts----------~LD~~ 525 (598)
T 3qf4_B 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS----------NVDTK 525 (598)
T ss_dssp CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCT----------TCCHH
T ss_pred CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc----------CCCHH
Confidence 0000 00 1233445566677778899999999765 35666
Q ss_pred HHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 610 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 610 ~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
....+.+.|..+.. +..+|+.||+++.+
T Consensus 526 ~~~~i~~~l~~~~~-----~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 526 TEKSIQAAMWKLME-----GKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHHHHT-----TSEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHcC-----CCEEEEEecCHHHH
Confidence 66777777776631 34578889987754
No 370
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.63 E-value=6.3e-05 Score=76.72 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=23.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDA 550 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~ 550 (741)
..+++|+||||||||+++.++|..+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997654
No 371
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.61 E-value=1.4e-05 Score=81.35 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=36.6
Q ss_pred CChHHHhhhCCCCCC---C--ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 192 LNPELFQRVGITPPK---G--CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~---G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
....+++++++.+.+ | ++|+|+|||||||++++||+.++..+..
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 455688888888887 6 8899999999999999999999876654
No 372
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.60 E-value=0.00014 Score=74.70 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=26.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHH
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQ 547 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~ 547 (741)
+.+.++..+.|.||||||||||+++|++.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44677888999999999999999999997
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.59 E-value=0.00014 Score=70.66 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=21.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHh
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
..+.|+||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 458899999999999999999986
No 374
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.58 E-value=0.00012 Score=84.02 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.7
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDA 550 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~ 550 (741)
+.++++..+.++|||||||||+++++++.+.+
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44678888999999999999999999987743
No 375
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.57 E-value=4.5e-05 Score=81.33 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=37.4
Q ss_pred hHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 194 PELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 194 ~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
..+++++++...+| ++|+||||+|||||+++|++.+.+..+++.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~ 87 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA 87 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE
Confidence 46788889888888 789999999999999999998876655554
No 376
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.56 E-value=2.3e-05 Score=88.19 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=35.2
Q ss_pred CChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 192 LNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 192 ~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
..+.+++.+++.+..| ++++|||||||||+++++++.+.++.+.++
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence 3445556655554444 889999999999999999999987766554
No 377
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.56 E-value=0.00014 Score=83.52 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.6
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.++++..+.+.|||||||||+++++++.+.+.
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 446788889999999999999999999987554
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.55 E-value=3.2e-05 Score=84.65 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=31.0
Q ss_pred HHhhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 196 LFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 196 ~~~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
+++++ +..+.| ++++|||||||||+++++++.+.+..+.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 34444 333344 789999999999999999999987766554
No 379
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.54 E-value=0.00019 Score=68.70 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=54.1
Q ss_pred cchhhhhcchHHHHHHHHHHHHHhc----CCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 274 SAIVDKYIGESARLIREMFNYARNH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 274 ~~~~~~~~G~~~~~v~~~~~~A~~~----~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
...+..+|||+++++ +++++++. .|.+++||| |++++|+.....+.+++..+.. +..+|
T Consensus 59 ~~~~~~LSgGekqr~--ala~~la~~~~~~~~~llLDE----------p~a~LD~~~~~~~~~~l~~~~~-----~~~~i 121 (173)
T 3kta_B 59 VKRIEAMSGGEKALT--ALAFVFAIQKFKPAPFYLFDE----------IDAHLDDANVKRVADLIKESSK-----ESQFI 121 (173)
T ss_dssp CCCGGGCCHHHHHHH--HHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHTT-----TSEEE
T ss_pred ccccccCCHHHHHHH--HHHHHHHhcccCCCCEEEECC----------CccCCCHHHHHHHHHHHHHhcc-----CCEEE
Confidence 345678999999999 88888763 457999999 9999999999999999988753 23688
Q ss_pred EeeCCCC
Q psy11254 350 MATNRPD 356 (741)
Q Consensus 350 ~at~~~~ 356 (741)
++||+..
T Consensus 122 vith~~~ 128 (173)
T 3kta_B 122 VITLRDV 128 (173)
T ss_dssp EECSCHH
T ss_pred EEEecHH
Confidence 8899754
No 380
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00031 Score=75.51 Aligned_cols=131 Identities=20% Similarity=0.200 Sum_probs=70.2
Q ss_pred ccCCChHHHHhc---CCCCCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhccc----------------c
Q psy11254 508 LPLLNPELFQRV---GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDKY----------------I 565 (741)
Q Consensus 508 ~~~~~~~~~~~~---~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~~----------------~ 565 (741)
.+...+.+..-+ |++++.-++++||||+|||+++..++... +.+.+.++...-.... .
T Consensus 55 i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~ 134 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQP 134 (366)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC
T ss_pred ecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecC
Confidence 344445554444 46777789999999999999998887654 3455555433211110 0
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccH---HHHHHHHHHHHHccCCCCCCCeEEEEeeCC
Q psy11254 566 GESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR---EIQRTLMELLNQMDGFDSLGQVKMIMATNR 638 (741)
Q Consensus 566 g~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~---~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~ 638 (741)
...+..+..+-...+...+++|+||.+..+..+....+...+. ...+.+.+++..+..+-...++.||++.+.
T Consensus 135 ~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 135 DNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp SSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 1122222333333344678999999999987532111110010 112345555555543333345666666543
No 381
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=8.9e-05 Score=79.41 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=27.1
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
.+++++.-+.|+||||||||||+..++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467778889999999999999999999887
No 382
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=8.8e-05 Score=77.23 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=33.4
Q ss_pred HhcCCeEEEeccccccccccC---CCCCC--ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC
Q psy11254 296 RNHQPCIIFMDEIDAIGGRRF---SEGTS--ADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 356 (741)
Q Consensus 296 ~~~~P~ILllDEid~l~~~~~---~p~~~--lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~ 356 (741)
...+|+++++|=+-++.+... .++.+ .+....+.+.+.|..|.++....++++|++-|-..
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 456899999999999985321 11110 01123445555555443333346788998887554
No 383
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.52 E-value=6.2e-05 Score=79.96 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCcc--EEEEechhhhc-----c---ccchHHHHHHHHHHHHHhcCCeEEEEc
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSAIVD-----K---YIGESARLIREMFNYARNHQPCIIFMD 590 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~--~~~v~~~~l~~-----~---~~g~s~~~i~~~f~~a~~~~p~Vl~iD 590 (741)
+.++..+++.||||+||||+++++++...+. .+.+.+..... . ++...+...+..+..|....|.+|++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 4556789999999999999999999988654 44444332111 1 220123455677888888899999999
Q ss_pred cccc
Q psy11254 591 EIDA 594 (741)
Q Consensus 591 E~d~ 594 (741)
|+.+
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9764
No 384
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.52 E-value=0.00017 Score=75.33 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.3
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
++|+||||+||||++..||+.+.+
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998865
No 385
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.51 E-value=3.3e-05 Score=84.48 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=69.2
Q ss_pred CceEEEcCCCCChHHHHHHH-HHHhCccEEEEe-c---hhhhccccchHHH-HHHHHHHHHHhcCCeEEEEcccccccCC
Q psy11254 525 KGCLLYGPPGTGKTLLARAV-ASQLDANFLKVV-S---SAIVDKYIGESAR-LIREMFNYARNHQPCIIFMDEIDAIGGR 598 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~-a~~~~~~~~~v~-~---~~l~~~~~g~s~~-~i~~~f~~a~~~~p~Vl~iDE~d~~~~~ 598 (741)
.++||.|+||| ||++|+++ +..+....+... + ..+.....+.++. .-...+..|.. .|+|+||++.+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~--- 312 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADG---GILAVDHLEGA--- 312 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTT---SEEEEECCTTC---
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCC---CeeehHhhhhC---
Confidence 47999999999 99999999 776654333211 1 1122110000000 00012223333 49999999984
Q ss_pred CCCCCCcccHHHHHHHHHHHHHcc----CCCCCCCeEEEEeeCCCC-----------CCCccccCCCCcceEEEc-CCCC
Q psy11254 599 RFSEGTSADREIQRTLMELLNQMD----GFDSLGQVKMIMATNRPD-----------TLDPALLRPGRLDRKIEI-PLPN 662 (741)
Q Consensus 599 r~~~~~~~~~~~~~~l~~lL~~~~----g~~~~~~v~vi~tTn~~~-----------~ld~al~rpgR~d~~i~~-~~p~ 662 (741)
....+..+.+.+++-. |..-..++.||+|+|..+ .+.++++. |||.++.+ +.|+
T Consensus 313 --------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd 382 (506)
T 3f8t_A 313 --------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPR 382 (506)
T ss_dssp --------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC---
T ss_pred --------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCC
Confidence 3344566666666421 221113578999999865 66778887 99987654 5555
Q ss_pred HH
Q psy11254 663 EQ 664 (741)
Q Consensus 663 ~~ 664 (741)
.+
T Consensus 383 ~e 384 (506)
T 3f8t_A 383 PG 384 (506)
T ss_dssp --
T ss_pred hh
Confidence 43
No 386
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.50 E-value=1.5e-05 Score=87.21 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=59.7
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc-----------CCCceeeeccc-----------ccchhhHHHHHhh
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQL-----------DANFLKVVSSL-----------FVTSKEDMAILMG 253 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l-----------~~~~~~v~~~~-----------~~~~~~~~~~~~~ 253 (741)
+++++.+..+ ++|+|+||+|||||+++|++.. .+..+.+.... +......... .+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~-L~ 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG-LG 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC-SC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh-hh
Confidence 4556666666 8899999999999999999872 22222222110 0000000000 00
Q ss_pred hh---hhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEecc
Q psy11254 254 NQ---LKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307 (741)
Q Consensus 254 ~~---~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDE 307 (741)
.. ...++..++..+++. ...+..+++++.+++ .++.++...|.||++-=
T Consensus 227 ~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~--~la~aL~~~P~ILVlNK 278 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVG--AYDPALLRRPSLVALNK 278 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHH--HHCHHHHHSCEEEEEEC
T ss_pred HHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHH--HHhHHhhcCCEEEEEEC
Confidence 00 011223333333332 466778888888776 77888889999999843
No 387
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=0.0002 Score=82.21 Aligned_cols=108 Identities=16% Similarity=0.253 Sum_probs=71.0
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE--echhhh-------------------------------c-c-
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV--VSSAIV-------------------------------D-K- 563 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v--~~~~l~-------------------------------~-~- 563 (741)
+.++++..+.++|||||||||+++++++.+.+.-..+ ++.++. . .
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 443 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC
Confidence 4567888899999999999999999999876542222 111110 0 0
Q ss_pred ----------------------------ccc------hHHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHH
Q psy11254 564 ----------------------------YIG------ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADRE 609 (741)
Q Consensus 564 ----------------------------~~g------~s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~ 609 (741)
.+| ..+++-|-.+.+|-..+|.||++||+.+ +-|..
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts----------~LD~~ 513 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS----------SVDPI 513 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCT----------TSCHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcc----------cCCHH
Confidence 000 1123334556666667899999999765 45666
Q ss_pred HHHHHHHHHHHccCCCCCCCeEEEEeeCCCCC
Q psy11254 610 IQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641 (741)
Q Consensus 610 ~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ 641 (741)
..+.+.+.+..+.. +.-+|+.||+++.
T Consensus 514 ~~~~i~~~l~~~~~-----~~tvi~itH~l~~ 540 (587)
T 3qf4_A 514 TEKRILDGLKRYTK-----GCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHHHHST-----TCEEEEEESCHHH
T ss_pred HHHHHHHHHHHhCC-----CCEEEEEecChHH
Confidence 77777777776531 3457888888754
No 388
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.47 E-value=0.0002 Score=77.82 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=66.5
Q ss_pred cCCChHHHHhc--CCCCCCceEEEcCCCCChHHHHHHHHHHh---------CccEEEEechhhhc--------cccc---
Q psy11254 509 PLLNPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSSAIVD--------KYIG--- 566 (741)
Q Consensus 509 ~~~~~~~~~~~--~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---------~~~~~~v~~~~l~~--------~~~g--- 566 (741)
+...+++-.-+ |+.++.-++|+||||||||||+..++-.. +...+.++..+... ..+|
T Consensus 161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~ 240 (400)
T 3lda_A 161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 240 (400)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCCh
Confidence 33444444444 67888889999999999999999765322 12245554432100 0001
Q ss_pred ---------------h-HHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCe
Q psy11254 567 ---------------E-SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 630 (741)
Q Consensus 567 ---------------~-s~~~i~~~f~~a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v 630 (741)
+ ....+..+........|.+|++|++..++....+..++ ....++.+.+++..+..+....++
T Consensus 241 ~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~-l~~Rq~~l~~il~~L~~lake~gi 319 (400)
T 3lda_A 241 DDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGE-LSARQMHLAKFMRALQRLADQFGV 319 (400)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CC-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccc-hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 01222333444445679999999999877543221111 111222233333333222222245
Q ss_pred EEEEeeCCCCCC
Q psy11254 631 KMIMATNRPDTL 642 (741)
Q Consensus 631 ~vi~tTn~~~~l 642 (741)
.||++++.....
T Consensus 320 tVIlv~Hv~~~~ 331 (400)
T 3lda_A 320 AVVVTNQVVAQV 331 (400)
T ss_dssp EEEEEEEC----
T ss_pred EEEEEEeecccC
Confidence 688887764433
No 389
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.43 E-value=0.00016 Score=73.75 Aligned_cols=30 Identities=37% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCceee
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDANFLKV 236 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v 236 (741)
.+++|+||||||||+++++||..+.. .+.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l-~G~v 134 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF-YGCV 134 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC-EEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc-ccee
Confidence 35999999999999999999987543 3443
No 390
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=6.9e-05 Score=72.56 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=23.5
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
+++| ++|+|||||||||++++|++..+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~ 35 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGV 35 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4456 789999999999999999997443
No 391
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.41 E-value=5.9e-05 Score=85.39 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=59.7
Q ss_pred cchhhhh-cchHHHHHHHHHHHHHhcCC--eEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 274 SAIVDKY-IGESARLIREMFNYARNHQP--CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 274 ~~~~~~~-~G~~~~~v~~~~~~A~~~~P--~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
...+.++ |||+.+++ ++++|+..+| .+|++|| |++++|+.....+.+++..+.. +.+||+
T Consensus 391 ~~~~~~l~SgG~~qrv--~la~~l~~~~~~~~lilDE----------p~~gld~~~~~~i~~~l~~~~~-----~~~vi~ 453 (517)
T 4ad8_A 391 LGPLSDVASGGELSRV--MLAVSTVLGADTPSVVFDE----------VDAGIGGAAAIAVAEQLSRLAD-----TRQVLV 453 (517)
T ss_dssp CCBSSSSSCSSHHHHH--HHHHHHHHCCCSSEEEECS----------CSSSCCTHHHHHHHHHHHHHHH-----HSEEEE
T ss_pred cccHHhcCCHHHHHHH--HHHHHHHhCCCCCEEEEeC----------CcCCCCHHHHHHHHHHHHHHhC-----CCEEEE
Confidence 3467787 99999999 9999999999 9999999 9999999999999999988753 468999
Q ss_pred eeCCCCCC
Q psy11254 351 ATNRPDTL 358 (741)
Q Consensus 351 at~~~~~l 358 (741)
+||+++.+
T Consensus 454 itH~~~~~ 461 (517)
T 4ad8_A 454 VTHLAQIA 461 (517)
T ss_dssp ECCCHHHH
T ss_pred EecCHHHH
Confidence 99998754
No 392
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.41 E-value=0.0004 Score=72.20 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.7
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDA 550 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~ 550 (741)
+.+.++..+.|.||||||||||+++|++.+.+
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44677788999999999999999999998754
No 393
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.41 E-value=0.0013 Score=72.08 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=40.0
Q ss_pred CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhc----cCCCCCCCeEEEEeeCCCC-----------CCCccccC
Q psy11254 300 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM----DGFDSLGQVKMIMATNRPD-----------TLDPALLR 364 (741)
Q Consensus 300 P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l----~~~~~~~~v~vI~at~~~~-----------~ld~al~r 364 (741)
-.++|+||++.+ ++..+..|.+.+.+= .|..-..+..||+|+|-.+ .|+++++.
T Consensus 301 gGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 301 GGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp TSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred CCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 359999997553 556677777777541 1110023567888888664 56677777
Q ss_pred CCccceeee-cCCCCH
Q psy11254 365 PGRLDRKIE-IPLPNE 379 (741)
Q Consensus 365 ~gr~d~~i~-~~~p~~ 379 (741)
|||-.+. +..|+.
T Consensus 370 --RFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRP 383 (506)
T ss_dssp --TCSEEEETTC----
T ss_pred --heeeEEEecCCCCh
Confidence 8886543 344443
No 394
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.38 E-value=0.00045 Score=82.50 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=57.8
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh-----Cc----cEE----------EEechhhhccccchHHHHHHHHHHHHH
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL-----DA----NFL----------KVVSSAIVDKYIGESARLIREMFNYAR 580 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~-----~~----~~~----------~v~~~~l~~~~~g~s~~~i~~~f~~a~ 580 (741)
.+..+.-++|+||||+||||+++.++... +. ... .+...+.+....+.-....+.+...++
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHH
Confidence 34556779999999999999999887532 11 111 111111111111111111122222222
Q ss_pred -hcCCeEEEEcccccccCCCCCCCCcccHH-HHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 581 -NHQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 643 (741)
Q Consensus 581 -~~~p~Vl~iDE~d~~~~~r~~~~~~~~~~-~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld 643 (741)
...|+++++||+.+ +.|.. ...+...++..+.. ..++.+|++||..+..+
T Consensus 749 ~a~~p~LlLLDEP~~----------GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 749 KATSQSLVILDELGR----------GTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HCCTTCEEEEESTTT----------TSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred hccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 46789999999765 23332 22333356655421 12456899999877654
No 395
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.38 E-value=0.00014 Score=78.65 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=49.9
Q ss_pred HHHhcCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc----EEEEech-hh-hc---cccch-----HHHHHHHHHHHHH
Q psy11254 515 LFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN----FLKVVSS-AI-VD---KYIGE-----SARLIREMFNYAR 580 (741)
Q Consensus 515 ~~~~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~----~~~v~~~-~l-~~---~~~g~-----s~~~i~~~f~~a~ 580 (741)
.+.++.+.++..++++|||||||||+++++++.+.+. .+.+..+ ++ .. .++.+ ....++..+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 3455556777789999999999999999999987542 2222111 11 00 01111 1122345666666
Q ss_pred hcCCeEEEEcccc
Q psy11254 581 NHQPCIIFMDEID 593 (741)
Q Consensus 581 ~~~p~Vl~iDE~d 593 (741)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999974
No 396
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.38 E-value=7e-05 Score=73.34 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
.+.+| ++|+||||||||||+++|++.+.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44456 77999999999999999999863
No 397
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.37 E-value=0.0005 Score=73.84 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=19.8
Q ss_pred ceEEcCCCChHHHHHHHHHHhc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++|+||||+|||||+..++...
T Consensus 77 i~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHH
Confidence 8899999999999999888765
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.00029 Score=75.41 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=55.3
Q ss_pred ccCCChHHHHhc---CCCCCCceEEEcCCCCChHHHHHHHHHHh---CccEEEEechhhhcc----ccc-----------
Q psy11254 508 LPLLNPELFQRV---GITPPKGCLLYGPPGTGKTLLARAVASQL---DANFLKVVSSAIVDK----YIG----------- 566 (741)
Q Consensus 508 ~~~~~~~~~~~~---~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---~~~~~~v~~~~l~~~----~~g----------- 566 (741)
.+...+.+..-+ |++++.-++++||||+|||++|..++... +...+.++...-... ..|
T Consensus 44 i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~ 123 (356)
T 1u94_A 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 123 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC
T ss_pred ccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCC
Confidence 344455555544 47778889999999999999999888764 345555554321110 001
Q ss_pred hHHHHHHHHHH-HHHhcCCeEEEEcccccccC
Q psy11254 567 ESARLIREMFN-YARNHQPCIIFMDEIDAIGG 597 (741)
Q Consensus 567 ~s~~~i~~~f~-~a~~~~p~Vl~iDE~d~~~~ 597 (741)
.+...+..++. .++...+.+++||.+..+..
T Consensus 124 ~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 124 DTGEQALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 11222233333 23456789999999999874
No 399
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.35 E-value=8.5e-05 Score=72.77 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCCCC--ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 202 ITPPKG--CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 202 l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
+..++| ++|+|||||||||++++|++.++.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 344455 789999999999999999998854
No 400
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.34 E-value=0.00024 Score=76.05 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred CceEEcCCCChHHHHHHHHHHhc
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l 229 (741)
-++|+||||+|||||+..++...
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999988765
No 401
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.34 E-value=0.00035 Score=75.47 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=54.9
Q ss_pred chhhhhcchHHHHHH----HHHHHHHhcC-CeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEE
Q psy11254 275 AIVDKYIGESARLIR----EMFNYARNHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 349 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~----~~~~~A~~~~-P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI 349 (741)
..+..+|||+.+++. -++++++..+ |++|+||| |++++|+..+..+.+++..+.. +..||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDE----------p~~~LD~~~~~~l~~~l~~~~~-----~~~vi 340 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDE----------PTVYLDENRRAKLAEIFRKVKS-----IPQMI 340 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHCCS-----CSEEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeC----------CCCcCCHHHHHHHHHHHHHhcc-----CCeEE
Confidence 345789999999873 3456667788 99999999 9999999999999999988743 23689
Q ss_pred EeeCCCC
Q psy11254 350 MATNRPD 356 (741)
Q Consensus 350 ~at~~~~ 356 (741)
++||+++
T Consensus 341 ~~th~~~ 347 (371)
T 3auy_A 341 IITHHRE 347 (371)
T ss_dssp EEESCGG
T ss_pred EEEChHH
Confidence 9999975
No 402
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00025 Score=75.16 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=55.4
Q ss_pred cCCChHHHHhc--CCCCCCceEEEcCCCCChHHHHHHHHHHh---------CccEEEEechhh---------hcc-----
Q psy11254 509 PLLNPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSSAI---------VDK----- 563 (741)
Q Consensus 509 ~~~~~~~~~~~--~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---------~~~~~~v~~~~l---------~~~----- 563 (741)
+...+.+-.-+ |++++.-++++||||+|||+++..++... +...+.++...- ...
T Consensus 90 ~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~ 169 (324)
T 2z43_A 90 STGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI 169 (324)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred cCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCH
Confidence 34445554444 57778889999999999999999998764 334445543321 000
Q ss_pred -------ccc---hHH---HHHHHHHHHHHh-cCCeEEEEcccccccC
Q psy11254 564 -------YIG---ESA---RLIREMFNYARN-HQPCIIFMDEIDAIGG 597 (741)
Q Consensus 564 -------~~g---~s~---~~i~~~f~~a~~-~~p~Vl~iDE~d~~~~ 597 (741)
++. ..+ ..+..+....+. ..+.+++||.+..+..
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 000 111 123344445555 6789999999998863
No 403
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.00035 Score=74.57 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=54.3
Q ss_pred cCCChHHHHhc--CCCCCCceEEEcCCCCChHHHHHHHHHHh---------CccEEEEechhh---------hcc-----
Q psy11254 509 PLLNPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQL---------DANFLKVVSSAI---------VDK----- 563 (741)
Q Consensus 509 ~~~~~~~~~~~--~~~~~~~~ll~G~~G~GKt~l~~~~a~~~---------~~~~~~v~~~~l---------~~~----- 563 (741)
+...+.+-.-+ |++++.-++++||||+|||+++..+|... +...+.++...- ...
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~ 184 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 184 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence 33444444444 57777789999999999999999998863 234444543321 000
Q ss_pred ------------ccch-HHHHHHHHHHHHHh--cCCeEEEEcccccccC
Q psy11254 564 ------------YIGE-SARLIREMFNYARN--HQPCIIFMDEIDAIGG 597 (741)
Q Consensus 564 ------------~~g~-s~~~i~~~f~~a~~--~~p~Vl~iDE~d~~~~ 597 (741)
+-.+ ....+..+....+. ..+.+|+||.+..+..
T Consensus 185 ~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 0011 11222333444555 6789999999999873
No 404
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00036 Score=73.90 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
+++| ++|+||||+|||+|+..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3445 7899999999999999999865
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.31 E-value=6.3e-05 Score=79.57 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=24.7
Q ss_pred ceEEcCCCChHHHHHHHHHHhc--------CCCceeee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQL--------DANFLKVV 237 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l--------~~~~~~v~ 237 (741)
++|+|++|+|||||++.|++.. .++++.+.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~ 44 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS 44 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC
Confidence 6799999999999999999976 45665553
No 406
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.29 E-value=5.7e-05 Score=75.82 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHH-HhcC
Q psy11254 195 ELFQRVGITPPKG--CLLYGPPGTGKTLLARAVA-SQLD 230 (741)
Q Consensus 195 ~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia-~~l~ 230 (741)
....+++|.+++| ++|+||||||||||+++|+ +.+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4456778888888 7799999999999999999 8863
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.29 E-value=0.00039 Score=80.01 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCcc
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 551 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~ 551 (741)
+.++++..+.+.|||||||||+++++++.+.+.
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 456788889999999999999999999987543
No 408
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.29 E-value=0.00028 Score=75.35 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=28.2
Q ss_pred ccCCChHHHhhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 189 LPLLNPELFQRVGITPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++.+.+.+=.-++=-+++| ++|+||||+|||+|+..+|...
T Consensus 104 i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 104 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred eecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444333332235566 7899999999999999999863
No 409
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.28 E-value=0.00013 Score=69.31 Aligned_cols=28 Identities=39% Similarity=0.764 Sum_probs=24.5
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
.-++|+|||||||||++++|++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~ 32 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3478999999999999999999988644
No 410
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.27 E-value=0.00073 Score=69.78 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.2
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
|+.++.-++|+||||+||||++..++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677889999999999999999998754
No 411
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.27 E-value=1.9e-05 Score=82.33 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=22.4
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
++|.||+|||||||++.|++.+.+
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999999875
No 412
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.25 E-value=8e-05 Score=72.97 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=26.1
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
+...+..++| +.|+|||||||||++++|++.++
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333444556 77999999999999999999885
No 413
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.25 E-value=0.00069 Score=64.56 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCccEEEEechh
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSA 559 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~ 559 (741)
.-++|+|+|||||||+++.++..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45899999999999999999999998888766543
No 414
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.00093 Score=73.16 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=61.9
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccch-hhHHHHHhhhhhhhcccccccccccCCCccchhhhhcc-hHH
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS-KEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIG-ESA 285 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G-~~~ 285 (741)
++++||||+||||++..||..+.....++........ ......+. .+.+..+++.. ....+ ...
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~---------~~~~~~gv~~~-----~~~~~~dp~ 165 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL---------QLGNQIGVQVY-----GEPNNQNPI 165 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH---------HHHHTTTCCEE-----CCTTCSCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH---------HHHHhcCCcee-----eccccCCHH
Confidence 7799999999999999999888654444422110000 00010110 00011111110 00111 122
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccccccCCCC-CC--ccHHHHHHHHHHHHhccCCCCCCCeEEEEeeC
Q psy11254 286 RLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG-TS--ADREIQRTLMELLNQMDGFDSLGQVKMIMATN 353 (741)
Q Consensus 286 ~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~-~~--lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~ 353 (741)
......++.+...+++++++|+ |+ .+ .|......+..+...+.. ..+.+++-++
T Consensus 166 ~i~~~al~~a~~~~~DvvIIDT----------aGr~~~~~d~~lm~el~~i~~~~~p----d~vlLVlDa~ 222 (433)
T 3kl4_A 166 EIAKKGVDIFVKNKMDIIIVDT----------AGRHGYGEETKLLEEMKEMYDVLKP----DDVILVIDAS 222 (433)
T ss_dssp HHHHHHHHHTTTTTCSEEEEEE----------CCCSSSCCTTHHHHHHHHHHHHHCC----SEEEEEEEGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEC----------CCCccccCCHHHHHHHHHHHHhhCC----cceEEEEeCc
Confidence 2334567777778899999999 43 34 566556666666555532 3455555444
No 415
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.20 E-value=0.00041 Score=76.53 Aligned_cols=68 Identities=7% Similarity=0.122 Sum_probs=56.4
Q ss_pred chhhhhcchHHHHHHHHHHHHHh----cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEE
Q psy11254 275 AIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350 (741)
Q Consensus 275 ~~~~~~~G~~~~~v~~~~~~A~~----~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~ 350 (741)
..+..+|||+++++ +++.+++ ..|++++||| |++++|+..+..+.+++..+.. .+..+|+
T Consensus 329 ~~~~~lS~Gq~~~~--~la~~la~~~~~~~~~lllDE----------p~~~LD~~~~~~l~~~l~~~~~----~~~~~ii 392 (430)
T 1w1w_A 329 KDMEYLSGGEKTVA--ALALLFAINSYQPSPFFVLDE----------VDAALDITNVQRIAAYIRRHRN----PDLQFIV 392 (430)
T ss_dssp CCGGGSCHHHHHHH--HHHHHHHHHTSSCCSEEEESS----------TTTTCCHHHHHHHHHHHHHHCB----TTBEEEE
T ss_pred cccccCCcchHHHH--HHHHHHHHhcCCCCCEEEeCC----------CcccCCHHHHHHHHHHHHHHhc----CCCEEEE
Confidence 34567999999999 7777777 5788999999 9999999999999999988753 3568999
Q ss_pred eeCCCCCC
Q psy11254 351 ATNRPDTL 358 (741)
Q Consensus 351 at~~~~~l 358 (741)
+||+...+
T Consensus 393 ~th~~~~~ 400 (430)
T 1w1w_A 393 ISLKNTMF 400 (430)
T ss_dssp ECSCHHHH
T ss_pred EECCHHHH
Confidence 99986543
No 416
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.19 E-value=0.00011 Score=77.43 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhcC--CCceeee
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQLD--ANFLKVV 237 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l~--~~~~~v~ 237 (741)
.+| ++|+||||||||||+++|++.+. +..+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 456 78999999999999999999987 6655554
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.17 E-value=0.00026 Score=77.56 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCC--eEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCC
Q psy11254 569 ARLIREMFNYARNHQP--CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642 (741)
Q Consensus 569 ~~~i~~~f~~a~~~~p--~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~l 642 (741)
++.-+-.+..+....| .||+|||+++ +-|......+.++|..+. . +.-||++||+++.+
T Consensus 299 Ge~qrl~lA~~l~~~~~~~~LlLDEpt~----------~LD~~~~~~l~~~L~~l~--~---~~~vi~itH~~~~~ 359 (415)
T 4aby_A 299 GELSRVMLAVSTVLGADTPSVVFDEVDA----------GIGGAAAIAVAEQLSRLA--D---TRQVLVVTHLAQIA 359 (415)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEESSTTT----------TCCHHHHHHHHHHHHHHT--T---TSEEEEECSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHh--C---CCEEEEEeCcHHHH
Confidence 4444555555666678 9999999886 356677788888888874 1 23477888876543
No 418
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00027 Score=69.12 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=29.5
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEE
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 555 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v 555 (741)
+.+.++..++|+|||||||||+++.+++.++.+++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3455667899999999999999999999999887643
No 419
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.17 E-value=0.001 Score=79.62 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHH
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVA 545 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a 545 (741)
+..+.-++|+||||+||||+++.++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4455679999999999999999984
No 420
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.00023 Score=68.77 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=33.1
Q ss_pred CCCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhh
Q psy11254 521 ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560 (741)
Q Consensus 521 ~~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l 560 (741)
+.++..++|.|||||||||+++.+++..+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 5566779999999999999999999987767777766554
No 421
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.16 E-value=0.00012 Score=70.33 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=29.5
Q ss_pred hhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 198 QRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 198 ~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
+++.+.+.+| .+|+||||||||||+++|+..+++.
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5566777778 6799999999999999999988653
No 422
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.14 E-value=0.0002 Score=70.07 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=24.4
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
+++| ++|+|||||||||+++.|++.+.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~ 34 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence 4455 78999999999999999999874443
No 423
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.12 E-value=0.00021 Score=69.06 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.9
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
++|+||||||||||+++|++.+.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccc
Confidence 67999999999999999999986433
No 424
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.12 E-value=0.0019 Score=67.20 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=27.3
Q ss_pred cCCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 519 VGITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 519 ~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
+++.++.-++|.||||+||||+++.+++..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578888889999999999999999999876
No 425
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00024 Score=68.55 Aligned_cols=35 Identities=40% Similarity=0.626 Sum_probs=26.7
Q ss_pred hCCCCCCC--ceEEcCCCChHHHHHHHHHHh-cCCCce
Q psy11254 200 VGITPPKG--CLLYGPPGTGKTLLARAVASQ-LDANFL 234 (741)
Q Consensus 200 ~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~-l~~~~~ 234 (741)
+++.++++ ++|+|+|||||||+++.++.. ++..+.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 45666666 889999999999999999998 565443
No 426
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.0025 Score=63.85 Aligned_cols=28 Identities=39% Similarity=0.600 Sum_probs=23.8
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHH
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQ 547 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~ 547 (741)
|+.++.-++++||||+||||++..++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5777888999999999999998777654
No 427
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.00027 Score=69.70 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=26.7
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhcCC---Cceeee
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQLDA---NFLKVV 237 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l~~---~~~~v~ 237 (741)
++| ++|+||||||||||+++|++.+.+ ..+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 455 789999999999999999999874 344444
No 428
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.04 E-value=0.0018 Score=64.47 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++++||+|+||||++.-++..+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999888777665
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.02 E-value=0.00014 Score=80.71 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=36.2
Q ss_pred HHHhhhCCCCCCC-ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 195 ELFQRVGITPPKG-CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 195 ~~~~~~~l~~~~G-vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
..++++++++++. ++|+||||||||||+++|+|.+.++.+.+..
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 4566777777664 6799999999999999999999888776653
No 430
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00037 Score=66.37 Aligned_cols=25 Identities=44% Similarity=0.631 Sum_probs=22.4
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
++|+|||||||||++++|++.++..
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 7899999999999999999987543
No 431
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.00 E-value=0.0012 Score=68.82 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCCCCceEEEcCCCCChHHHHHHHHHHh-----CccEEEEechhhhc----cccc------------hHHHHHHHHHHH
Q psy11254 520 GITPPKGCLLYGPPGTGKTLLARAVASQL-----DANFLKVVSSAIVD----KYIG------------ESARLIREMFNY 578 (741)
Q Consensus 520 ~~~~~~~~ll~G~~G~GKt~l~~~~a~~~-----~~~~~~v~~~~l~~----~~~g------------~s~~~i~~~f~~ 578 (741)
|+.++ .++++||||+|||||+-.++... +...+.++..+-.. ..+| ..++..-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46666 68999999999999976555443 34455555442111 0011 112210122222
Q ss_pred ---HHhcCCeEEEEcccccccCCCCCCCCccc-----HHHHHHHHHHHHHccCCCCCCCeEEEEeeCC
Q psy11254 579 ---ARNHQPCIIFMDEIDAIGGRRFSEGTSAD-----REIQRTLMELLNQMDGFDSLGQVKMIMATNR 638 (741)
Q Consensus 579 ---a~~~~p~Vl~iDE~d~~~~~r~~~~~~~~-----~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~ 638 (741)
.+...|.++++|-+.++.++..-.+.-.+ ..-.+.+.+.|..+.++-...++.+|++-+-
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 35567999999999998753211111001 0123445555554433333345656665443
No 432
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.99 E-value=0.0046 Score=69.55 Aligned_cols=75 Identities=13% Similarity=0.289 Sum_probs=57.1
Q ss_pred eEEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC--CCCccccCCCCcceEEEcCCCC
Q psy11254 585 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD--TLDPALLRPGRLDRKIEIPLPN 662 (741)
Q Consensus 585 ~Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~--~ld~al~rpgR~d~~i~~~~p~ 662 (741)
-+++|||+..++..- ..+....+.++......+ ++.+|++|.+|. .++..+.. -|...|-|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GRa~----GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKARAA----GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCTTT----TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHhhC----CeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999999886421 134556777777765543 799999999998 77776654 688889999999
Q ss_pred HHHHHHHHHH
Q psy11254 663 EQARLEILKI 672 (741)
Q Consensus 663 ~~~r~~i~~~ 672 (741)
..+-..|+..
T Consensus 412 ~~Dsr~ILd~ 421 (574)
T 2iut_A 412 KIDSRTILDQ 421 (574)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCc
Confidence 9888888853
No 433
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.97 E-value=0.00043 Score=65.98 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=26.6
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
-++|+|+|||||||+++.|+..++..+..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 3789999999999999999999987665544
No 434
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00053 Score=65.01 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=26.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEE
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLK 554 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~ 554 (741)
+..++|+|||||||||+++.+++.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3568999999999999999999999876553
No 435
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.0016 Score=53.31 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHH
Q psy11254 659 PLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEILALLLGVF 732 (741)
Q Consensus 659 ~~p~~~~r~~i~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~~~~~~~s~~~i~~~l~g~~ 732 (741)
|+|+.++|.+||+.|++.+....+++...+.......+|+.+......++...+.+....++.+++..++.-|.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999887766777777777778889999998888888888888888999999999987764
No 436
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.94 E-value=0.0048 Score=76.94 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.4
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHh
Q psy11254 170 YSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 228 (741)
Q Consensus 170 ~~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~ 228 (741)
...+.|.++.+++|.+.+...- .-.+-+.|+|+.|+||||||+.++..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3458899999999999875321 01122779999999999999988865
No 437
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.94 E-value=0.0007 Score=75.62 Aligned_cols=75 Identities=13% Similarity=0.334 Sum_probs=43.3
Q ss_pred cCCe-EEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCCCeEEEEeeCCCC--CCCccccCCCccceeeec
Q psy11254 298 HQPC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD--TLDPALLRPGRLDRKIEI 374 (741)
Q Consensus 298 ~~P~-ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~~v~vI~at~~~~--~ld~al~r~gr~d~~i~~ 374 (741)
.-|. ++++||+..+... ....+.+++..+......-++.+|++||++. .++..+.. -+...|.+
T Consensus 295 ~lP~ivlvIDE~~~ll~~-----------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMT-----------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCCEEEEEEETHHHHHHH-----------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred cCCcEEEEEeCHHHHHhh-----------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 4575 7899998666531 0122333333332111134899999999998 46655543 45566667
Q ss_pred CCCCHHHHHhc
Q psy11254 375 PLPNEQARLAH 385 (741)
Q Consensus 375 ~~p~~~~r~~i 385 (741)
...+..+...+
T Consensus 362 rv~s~~dsr~i 372 (512)
T 2ius_A 362 TVSSKIDSRTI 372 (512)
T ss_dssp CCSSHHHHHHH
T ss_pred EcCCHHHHHHh
Confidence 66665555443
No 438
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.94 E-value=0.0023 Score=75.67 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
..+..++|+||||+||||+++.+++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345668999999999999999998753
No 439
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.94 E-value=0.00081 Score=72.00 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=52.8
Q ss_pred chhh-hhcchHHHHHHHHHHHHHh---------cCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCCCC
Q psy11254 275 AIVD-KYIGESARLIREMFNYARN---------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 344 (741)
Q Consensus 275 ~~~~-~~~G~~~~~v~~~~~~A~~---------~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~~~ 344 (741)
..+. .+|||+++++ +++++++ .+|+||+||| |++++|+..+..+.+++..+.
T Consensus 260 ~~~~~~lS~Gqqq~l--~lA~~La~~~l~~~~~~~p~iLLLDE----------p~s~LD~~~~~~l~~~l~~~~------ 321 (359)
T 2o5v_A 260 FPASDYASRGEGRTV--ALALRRAELELLREKFGEDPVLLLDD----------FTAELDPHRRQYLLDLAASVP------ 321 (359)
T ss_dssp EEHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHSSCCEEEECC----------GGGCCCHHHHHHHHHHHHHSS------
T ss_pred cchhhhCCHHHHHHH--HHHHHHHHhhhhhhccCCCCEEEEeC----------ccccCCHHHHHHHHHHHHhcC------
Confidence 3455 7899999999 8888888 7999999999 999999999999999987763
Q ss_pred CeEEEEeeCC
Q psy11254 345 QVKMIMATNR 354 (741)
Q Consensus 345 ~v~vI~at~~ 354 (741)
.++|++||.
T Consensus 322 -qt~i~~th~ 330 (359)
T 2o5v_A 322 -QAIVTGTEL 330 (359)
T ss_dssp -EEEEEESSC
T ss_pred -cEEEEEEec
Confidence 378889993
No 440
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.93 E-value=0.0008 Score=71.05 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.3
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHh
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQ 228 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~ 228 (741)
+++| ++|+||||+|||+|+..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455 789999999999999999875
No 441
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00038 Score=68.09 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.9
Q ss_pred CceEEcCCCChHHHHHHHHHHhcC
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
-++|+||||+|||||+++|++.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 378999999999999999999874
No 442
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.91 E-value=0.002 Score=66.79 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=25.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeeec
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVS 238 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~ 238 (741)
++|.|||||||||+++.++..++..+..++.
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 7899999999999999999887544444443
No 443
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00045 Score=65.26 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.5
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|.|||||||||+++.|+..++..+..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~ 31 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIK 31 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeec
Confidence 6799999999999999999998866543
No 444
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00043 Score=66.51 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.4
Q ss_pred ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
++|+||||||||||+++|++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999875
No 445
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.89 E-value=0.0037 Score=66.42 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=100.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHhCc----cEEEEechhhhccccchHHHHHHHHHHHHHh----cCCeEEEEccccc-c
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQLDA----NFLKVVSSAIVDKYIGESARLIREMFNYARN----HQPCIIFMDEIDA-I 595 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~~~~----~~~~v~~~~l~~~~~g~s~~~i~~~f~~a~~----~~p~Vl~iDE~d~-~ 595 (741)
..++|+||+|.||++.++.++..+.. ++..+... ++ ..++.+++.+.. ....|+++||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 45899999999999999999886521 21112111 11 223445544432 3457999999987 4
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCC------CCccccCCCCcceEEEcCCCCHHHHHHH
Q psy11254 596 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT------LDPALLRPGRLDRKIEIPLPNEQARLEI 669 (741)
Q Consensus 596 ~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~------ld~al~rpgR~d~~i~~~~p~~~~r~~i 669 (741)
.. ...+.|+..++.. .+++++|++|+.++. +-+++.. |. .++.|.+++.++....
T Consensus 90 ~~--------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 90 NA--------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp CT--------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred Ch--------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 20 1234456666643 345666666665443 3356555 44 5789999999998888
Q ss_pred HHHhhcCccccCCCCcccccccccccccchHHHHHHHhhhhhhh-cCCCcccHHHHHHHHHH
Q psy11254 670 LKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSVIPELLE-DTSPKQTVKEILALLLG 730 (741)
Q Consensus 670 ~~~~~~~~~~~~~~~~~a~~~l~~~~s~gf~~~a~~~~~~~l~~-~~~~~~s~~~i~~~l~g 730 (741)
++..+.. .+..+++.+...+.....|. ...+. +.+..+.. ......+.++|..++..
T Consensus 151 l~~~~~~--~g~~i~~~a~~~l~~~~~gd-l~~~~-~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 151 VAARAKQ--LNLELDDAANQVLCYCYEGN-LLALA-QALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHH--TTCEECHHHHHHHHHSSTTC-HHHHH-HHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCCHHHHHHHHHHhchH-HHHHH-HHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 8777653 23356666666665544332 22222 22222222 12346777777666443
No 446
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.89 E-value=0.00036 Score=68.04 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcC
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
.+++++|||||||||++.++|+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999874
No 447
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.88 E-value=0.00051 Score=66.01 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCceee
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDANFLKV 236 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v 236 (741)
+.++|+|||||||||+++.||..++..+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4588999999999999999999998766543
No 448
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.003 Score=64.14 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=24.8
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
++|+|||||||||+++.|+..++.....+.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 789999999999999999998874443333
No 449
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.0017 Score=66.02 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhh
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l 560 (741)
..+..++|.|+|||||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345668999999999999999999999866666666554
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.85 E-value=0.0005 Score=73.37 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=49.8
Q ss_pred ceEEcCCCChHHHHHHHHHHhcC-CCceeeecc-c------------ccc------hhhHHHH-----Hhhhhhhhcccc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLD-ANFLKVVSS-L------------FVT------SKEDMAI-----LMGNQLKRRSTH 262 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~-~~~~~v~~~-~------------~~~------~~~~~~~-----~~~~~~~~~~~~ 262 (741)
++|+||||+|||||+++|+|... +..+.++.. . ++. ....+.. +.......++.+
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~~~~~e 297 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVE 297 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHHHTSGG
T ss_pred EEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHHHHHHH
Confidence 78999999999999999999988 766665421 0 000 0001100 011223344556
Q ss_pred cccccccCCCccchhhhhcchHHHHHHHHHHHH
Q psy11254 263 HLEKTYFPFYSSAIVDKYIGESARLIREMFNYA 295 (741)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A 295 (741)
.++.+++..........++ |+.+++ +++.+
T Consensus 298 ~l~~~gl~~f~~~~~~~lS-G~~~r~--ala~g 327 (358)
T 2rcn_A 298 FHDYLGHCKYRDCKHDADP-GCAIRE--AVENG 327 (358)
T ss_dssp GGGGTTCSSSTTCCSSSCT-TCHHHH--HHHHT
T ss_pred HHHHcCCchhcCCCcccCC-HHHHHH--HHHhc
Confidence 6666676666666777788 666655 66655
No 451
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00077 Score=64.72 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEE
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKV 555 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v 555 (741)
+..++|+|||||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45689999999999999999999999887754
No 452
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.00026 Score=77.25 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=28.4
Q ss_pred HhhhCCCCCCC----ceEEcCCCChHHHHHHHHHHhc
Q psy11254 197 FQRVGITPPKG----CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 197 ~~~~~l~~~~G----vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++++++.+++| ++|+||||+|||||+++|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 77888888888 4699999999999999999973
No 453
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.00049 Score=65.62 Aligned_cols=28 Identities=46% Similarity=0.666 Sum_probs=24.6
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCce
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLDANFL 234 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~~~~~ 234 (741)
.++|.|||||||||+++.||..++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4789999999999999999999886554
No 454
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.81 E-value=0.00085 Score=64.72 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=28.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEE
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 554 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~ 554 (741)
..+.-++|.|+|||||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 445668999999999999999999999877655
No 455
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.81 E-value=0.0069 Score=63.78 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=31.9
Q ss_pred hhhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 198 QRVGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 198 ~~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
.++++...++ ++++||||+||||++..||+.+.+..+++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4567766666 779999999999999999999876555554
No 456
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.81 E-value=0.00059 Score=67.22 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=22.2
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDA 231 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~ 231 (741)
++|+||||+|||||++.|++.+.+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 779999999999999999998865
No 457
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.77 E-value=0.0032 Score=73.91 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=24.7
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
++.+. +..++|+||||+||||+++.+++..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34444 6779999999999999999998754
No 458
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.0007 Score=66.15 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|.|+|||||||+++.|++.++..+..
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEe
No 459
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.00075 Score=65.10 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=23.7
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
-++|.|+|||||||+++.++..++..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~ 33 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPL 33 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 378999999999999999999887544
No 460
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.74 E-value=0.0073 Score=65.43 Aligned_cols=111 Identities=24% Similarity=0.369 Sum_probs=62.7
Q ss_pred CceEEcCCCChHHHHHHHHHHhcC---CCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhcch
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLD---ANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGE 283 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~ 283 (741)
.++++|++|||||+++++|..... .+|..+....+.. ..-.+.+.|+.. +.+.|.
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~---------------------g~~tga 219 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEK---------------------GAFTGA 219 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCT---------------------TSSTTC
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCC---------------------CCCCCc
Confidence 479999999999999999987764 3566665432211 111122222210 011111
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhcc--CCCC----CCCeEEEEeeCC
Q psy11254 284 SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD--GFDS----LGQVKMIMATNR 354 (741)
Q Consensus 284 ~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~--~~~~----~~~v~vI~at~~ 354 (741)
...+ .-.|..| +..+||||||+.+ +...+..|...+..-. ...+ ..++.+|++||.
T Consensus 220 ~~~~-~g~~~~a---~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 220 VSSK-EGFFELA---DGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CSCB-CCHHHHT---TTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred cccc-CCceeeC---CCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 1000 0134444 3469999998765 4567888888887521 1111 136789999985
No 461
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.00084 Score=64.67 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=27.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH-hCccEEE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQ-LDANFLK 554 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~-~~~~~~~ 554 (741)
.+..++|+|+|||||||+++.++.. ++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 4556999999999999999999998 6766653
No 462
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.74 E-value=0.00063 Score=65.68 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.8
Q ss_pred ceEEcCCCChHHHHHHHHHHhc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
++|+|||||||||++++|++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6799999999999999999844
No 463
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00064 Score=67.58 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.6
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
-++|+|||||||||+++.|++.++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 378999999999999999999887543
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0028 Score=69.40 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
++++|+||+||||++..||..+...
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999877543
No 465
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.72 E-value=0.00085 Score=63.09 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.6
Q ss_pred hcCCCCCCceEEEcCCCCChHHHHHHHHHHh
Q psy11254 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQL 548 (741)
Q Consensus 518 ~~~~~~~~~~ll~G~~G~GKt~l~~~~a~~~ 548 (741)
++.+.++..+.|.||||+|||||++++++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4456777789999999999999999999998
No 466
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.72 E-value=0.0052 Score=68.60 Aligned_cols=76 Identities=14% Similarity=0.352 Sum_probs=54.1
Q ss_pred Ce-EEEEcccccccCCCCCCCCcccHHHHHHHHHHHHHccCCCCCCCeEEEEeeCCCC--CCCccccCCCCcceEEEcCC
Q psy11254 584 PC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD--TLDPALLRPGRLDRKIEIPL 660 (741)
Q Consensus 584 p~-Vl~iDE~d~~~~~r~~~~~~~~~~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~--~ld~al~rpgR~d~~i~~~~ 660 (741)
|. ++++||+..++.. ........+..+....... ++.+|++|++|. .++..+.. -|...|-|..
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~----GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKARAA----GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGG----TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhC----CcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 8999999887531 1223445555555554322 677999999997 57666654 6888899999
Q ss_pred CCHHHHHHHHHH
Q psy11254 661 PNEQARLEILKI 672 (741)
Q Consensus 661 p~~~~r~~i~~~ 672 (741)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999999988864
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.72 E-value=0.0016 Score=68.62 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=29.8
Q ss_pred cCCChHHHHhc--CCCCCCceEEEcCCCCChHHHHHHHHHH
Q psy11254 509 PLLNPELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQ 547 (741)
Q Consensus 509 ~~~~~~~~~~~--~~~~~~~~ll~G~~G~GKt~l~~~~a~~ 547 (741)
+...+.+-.-+ |++++.-++++||||+|||+++..++..
T Consensus 81 ~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 81 STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555544 5777778999999999999999988865
No 468
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.71 E-value=0.0058 Score=64.69 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
-+.+| ++|.|+||+|||||+..+|....
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455 88999999999999999987653
No 469
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.69 E-value=0.0054 Score=74.35 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHh------Cc----cEEEE----------echhhhccccch-HHHHHHHHHHHHHhc
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQL------DA----NFLKV----------VSSAIVDKYIGE-SARLIREMFNYARNH 582 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~------~~----~~~~v----------~~~~l~~~~~g~-s~~~i~~~f~~a~~~ 582 (741)
+..++|+||||+||||+++.+ +.+ +. ....+ ...+........ +....+.....+...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~ 867 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT 867 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence 567999999999999999998 433 20 00111 111111110000 011112222233446
Q ss_pred CCeEEEEcccccccCCCCCCCCcccH-HHHHHHHHHHHHccCCCCCCCeEEEEeeCCCCCCC
Q psy11254 583 QPCIIFMDEIDAIGGRRFSEGTSADR-EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 643 (741)
Q Consensus 583 ~p~Vl~iDE~d~~~~~r~~~~~~~~~-~~~~~l~~lL~~~~g~~~~~~v~vi~tTn~~~~ld 643 (741)
.|+++++||+.+- .+. +....+..+|..+.. ..++.+|++||..+...
T Consensus 868 ~~sLlLLDEp~~G----------td~~dg~~~~~~il~~L~~---~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 868 AHSLVLVDELGRG----------TATFDGTAIANAVVKELAE---TIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp TTCEEEEECTTTT----------SCHHHHHHHHHHHHHHHHH---TSCCEEEEECCCHHHHH
T ss_pred CCcEEEEECCCCC----------CChHHHHHHHHHHHHHHHh---cCCCEEEEEeCCHHHHH
Confidence 7899999997651 221 223344555555531 12456899999876543
No 470
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.68 E-value=0.00075 Score=66.11 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.7
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
++|+|||||||||+++.|++ ++..+
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 67999999999999999998 66544
No 471
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.66 E-value=0.012 Score=64.21 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 178 EQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 178 ~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
.+++-+.+.+...++... .++++..+.-++++||+|+||||++..||+.+.....++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 344555555554444322 4556661122778999999999999999999876555543
No 472
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.66 E-value=0.00085 Score=66.53 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCC---ceEEcCCCChHHHHHHHHHHhcCCCceeeecccccchhhHHHHHhhhhhhhcccccccccccCCCccchhhhhc
Q psy11254 205 PKG---CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYI 281 (741)
Q Consensus 205 ~~G---vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 281 (741)
.+| +++.|+||+||||++-.+|..+.....++.. -..-.+-.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v-----------------------------------~d~D~q~~ 47 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA-----------------------------------GVVETHGR 47 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE-----------------------------------EECCCTTC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE-----------------------------------EEeCCCCC
Q ss_pred chHHHHHH-------------------HHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHHHHHHHHhccCCCC
Q psy11254 282 GESARLIR-------------------EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 342 (741)
Q Consensus 282 G~~~~~v~-------------------~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~l~~lL~~l~~~~~ 342 (741)
.+....++ ..+..++...|+++++||+ +..+.+......+.+.+..+-.
T Consensus 48 ~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~pdlvIVDEl---------G~~~~~~~r~~~~~qDV~~~l~--- 115 (228)
T 2r8r_A 48 AETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAPSLVLVDEL---------AHTNAPGSRHTKRWQDIQELLA--- 115 (228)
T ss_dssp HHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCCSEEEESCT---------TCBCCTTCSSSBHHHHHHHHHH---
T ss_pred hhHHHHhcCccccCcceeecCCcccccccHHHHHhcCCCEEEEeCC---------CCCCcccchhHHHHHHHHHHHc---
Q ss_pred CCCeEEEEeeC
Q psy11254 343 LGQVKMIMATN 353 (741)
Q Consensus 343 ~~~v~vI~at~ 353 (741)
.++-++.++|
T Consensus 116 -sgidVitT~N 125 (228)
T 2r8r_A 116 -AGIDVYTTVN 125 (228)
T ss_dssp -TTCEEEEEEE
T ss_pred -CCCCEEEEcc
No 473
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.66 E-value=0.0012 Score=62.40 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=27.0
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhCccEEEEe
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLDANFLKVV 556 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~ 556 (741)
.++|.|||||||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876443
No 474
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.66 E-value=0.0013 Score=64.29 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=28.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhh
Q psy11254 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560 (741)
Q Consensus 522 ~~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l 560 (741)
.++.-++|.|||||||||+++.+++.++..+ +++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3456789999999999999999999996544 444443
No 475
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.65 E-value=0.0071 Score=65.01 Aligned_cols=135 Identities=21% Similarity=0.369 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHhcCCC--ceeeecccccchhhHHH
Q psy11254 172 AIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN--FLKVVSSLFVTSKEDMA 249 (741)
Q Consensus 172 ~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~l~~~--~~~v~~~~~~~~~~~~~ 249 (741)
.+.|-.....++.+.+..- . .....++++|++||||++++++|....+.. |..+....... ..-.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~-~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ-ELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT-TTHHH
T ss_pred cccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh-HHHHH
Confidence 4556666666665554320 0 112348899999999999999998776544 55554432111 11111
Q ss_pred HHhhhhhhhcccccccccccCCCccchhhhhcchHHHHHHHHHHHHHhcCCeEEEeccccccccccCCCCCCccHHHHHH
Q psy11254 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329 (741)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~A~~~~P~ILllDEid~l~~~~~~p~~~lD~~~~~~ 329 (741)
.+.|+.. +.+.|....+ .-.|..| +...||||||+.+ +...+..
T Consensus 198 ~lfg~~~---------------------g~~tga~~~~-~g~~~~a---~~gtlfldei~~l-----------~~~~Q~~ 241 (368)
T 3dzd_A 198 ELFGHEK---------------------GAFTGALTRK-KGKLELA---DQGTLFLDEVGEL-----------DQRVQAK 241 (368)
T ss_dssp HHHEECS---------------------CSSSSCCCCE-ECHHHHT---TTSEEEEETGGGS-----------CHHHHHH
T ss_pred HhcCccc---------------------cccCCccccc-CChHhhc---CCCeEEecChhhC-----------CHHHHHH
Confidence 2222110 0111110000 0034433 3358999998765 5567888
Q ss_pred HHHHHHhcc--CCCCC----CCeEEEEeeCC
Q psy11254 330 LMELLNQMD--GFDSL----GQVKMIMATNR 354 (741)
Q Consensus 330 l~~lL~~l~--~~~~~----~~v~vI~at~~ 354 (741)
|..++..-. ...+. -++.+|++||.
T Consensus 242 Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 242 LLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp HHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred HHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 888886422 11111 25789999983
No 476
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0016 Score=63.64 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcCCCce
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLDANFL 234 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~ 234 (741)
.++| ++|.|||||||||+++.|++.+.+..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3455 789999999999999999998754433
No 477
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.64 E-value=0.00031 Score=70.26 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceeee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKVV 237 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v~ 237 (741)
++|+||||||||||+++|++.+.+..+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 468999999999999999999988766553
No 478
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.64 E-value=0.018 Score=60.43 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCCCC--ceEEcCCCChHHHHHHHHHHhc
Q psy11254 203 TPPKG--CLLYGPPGTGKTLLARAVASQL 229 (741)
Q Consensus 203 ~~~~G--vlL~Gp~GtGKTtL~r~ia~~l 229 (741)
-+++| ++|.|+||+|||||+..+|...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555 8899999999999999998654
No 479
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.64 E-value=0.00091 Score=67.63 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|+|||||||||++++|+..++.....
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
No 480
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.64 E-value=0.0012 Score=62.83 Aligned_cols=29 Identities=45% Similarity=0.649 Sum_probs=26.2
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhCccEEE
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLDANFLK 554 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~~~~~~ 554 (741)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987754
No 481
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.00097 Score=65.01 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCCCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 202 ITPPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 202 l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
+.+.+| ++|+||+|+|||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344455 78999999999999999998865
No 482
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.61 E-value=0.00088 Score=65.45 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCc
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANF 233 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~ 233 (741)
++|+|+|||||||+++.|++ ++..+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~ 28 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYV 28 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEE
Confidence 67999999999999999999 76443
No 483
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.60 E-value=0.0011 Score=63.33 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=24.9
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCce
Q psy11254 206 KGCLLYGPPGTGKTLLARAVASQLDANFL 234 (741)
Q Consensus 206 ~GvlL~Gp~GtGKTtL~r~ia~~l~~~~~ 234 (741)
+.++|+|+|||||||+++.++..++..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 34889999999999999999998876543
No 484
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0018 Score=61.93 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHhCccEEE
Q psy11254 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLK 554 (741)
Q Consensus 523 ~~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~ 554 (741)
.+..++|+|+|||||||+++.++..++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45679999999999999999999999877654
No 485
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.001 Score=67.71 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCceee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLKV 236 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v 236 (741)
++|+||||||||||++.||+.++..+...
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
No 486
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.58 E-value=0.0013 Score=63.14 Aligned_cols=29 Identities=34% Similarity=0.652 Sum_probs=25.2
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 207 GCLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 207 GvlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
-++|+|+|||||||+++.|+..++..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 47899999999999999999998876543
No 487
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.57 E-value=0.0011 Score=67.41 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=0.0
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++| +.|+|||||||||++++|+..++..+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
No 488
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.57 E-value=0.015 Score=66.42 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=35.3
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHHhhhCCCCCCCceEEcCCCChHHHHHHHHHHh
Q psy11254 171 SAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 228 (741)
Q Consensus 171 ~~i~Gl~~~k~~i~e~i~~~~~~~~~~~~~~l~~~~GvlL~Gp~GtGKTtL~r~ia~~ 228 (741)
..+.|-+...++|.+.+...- .-.+-++++||+|+|||||++.++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 457899999999998875310 01122789999999999999998753
No 489
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.56 E-value=0.0035 Score=71.51 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=21.6
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCC
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDAN 232 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~ 232 (741)
+++.|||||||||++++++..+...
T Consensus 207 ~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 207 VVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 7799999999999999999876443
No 490
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.56 E-value=0.0015 Score=62.04 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=25.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEE
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFL 553 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~ 553 (741)
+..++|+|||||||||+++.+++.++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456899999999999999999999876544
No 491
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.55 E-value=0.0037 Score=64.82 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=29.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHhCccEEEEechhh
Q psy11254 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560 (741)
Q Consensus 524 ~~~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v~~~~l 560 (741)
+.-++|.|||||||||+++.++..++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4568999999999999999999988655666765433
No 492
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.00098 Score=63.95 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|.|+|||||||+++.|+..++..+..
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
No 493
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.52 E-value=0.0013 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|.|++||||||+++.||..++.++..
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.51 E-value=0.00071 Score=65.38 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=17.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHH
Q psy11254 525 KGCLLYGPPGTGKTLLARAVASQ 547 (741)
Q Consensus 525 ~~~ll~G~~G~GKt~l~~~~a~~ 547 (741)
.-.+++||+|+||||++-.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999998555544
No 495
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.51 E-value=0.01 Score=63.28 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=27.7
Q ss_pred hhCCCCCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 199 RVGITPPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 199 ~~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
++.+++.+| ++|+||+|||||||++.|++.+.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 456778888 89999999999999999998763
No 496
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0019 Score=61.89 Aligned_cols=30 Identities=33% Similarity=0.630 Sum_probs=26.9
Q ss_pred ceEEEcCCCCChHHHHHHHHHHhCccEEEE
Q psy11254 526 GCLLYGPPGTGKTLLARAVASQLDANFLKV 555 (741)
Q Consensus 526 ~~ll~G~~G~GKt~l~~~~a~~~~~~~~~v 555 (741)
.++|+|+|||||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887643
No 497
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.47 E-value=0.0076 Score=66.54 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCC--ceEEcCCCChHHHHHHHHHHhcC
Q psy11254 204 PPKG--CLLYGPPGTGKTLLARAVASQLD 230 (741)
Q Consensus 204 ~~~G--vlL~Gp~GtGKTtL~r~ia~~l~ 230 (741)
+++| ++|.|+||+|||+|+..+|....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445 78999999999999999987653
No 498
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.46 E-value=0.016 Score=60.32 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHHHHhhccCCChHHHhh-hCCCCCCC--ceEEcCCCChHHHHHHHHHHhcCCCceee
Q psy11254 180 IRELREVIELPLLNPELFQR-VGITPPKG--CLLYGPPGTGKTLLARAVASQLDANFLKV 236 (741)
Q Consensus 180 k~~i~e~i~~~~~~~~~~~~-~~l~~~~G--vlL~Gp~GtGKTtL~r~ia~~l~~~~~~v 236 (741)
++.+.+.+...++... .+ +++..+ + ++++|+||+||||++..+|+.+.....++
T Consensus 73 ~~~~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 73 IKIVYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp HHHHHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3444444443343321 33 555554 4 77899999999999999999886544444
No 499
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.45 E-value=0.0018 Score=61.86 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCC--ceEEcCCCChHHHHHHHHHHhc---CCCceeeec
Q psy11254 205 PKG--CLLYGPPGTGKTLLARAVASQL---DANFLKVVS 238 (741)
Q Consensus 205 ~~G--vlL~Gp~GtGKTtL~r~ia~~l---~~~~~~v~~ 238 (741)
.+| ++|.|++||||||+++.+++.+ +.++..+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
No 500
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.45 E-value=0.0013 Score=62.01 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=0.0
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCcee
Q psy11254 208 CLLYGPPGTGKTLLARAVASQLDANFLK 235 (741)
Q Consensus 208 vlL~Gp~GtGKTtL~r~ia~~l~~~~~~ 235 (741)
++|.|||||||||+++.| ..++..+..
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEE
Done!