RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11254
(741 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 292 bits (748), Expect = 2e-94
Identities = 102/291 (35%), Positives = 151/291 (51%), Gaps = 39/291 (13%)
Query: 160 MSHEDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKT 219
M ED T++ + G E E+ E++E L P FQ++G PKG L+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 220 LLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDK 279
LLA+A+A + F + S V+
Sbjct: 60 LLAKAIAGEAKVPFFTISGS-----------------------------------DFVEM 84
Query: 280 YIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 339
++G A +R+MF A+ PCIIF+DEIDA+G +R + E ++TL ++L +MDG
Sbjct: 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144
Query: 340 FDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKH 399
F+ + +I ATNRPD LDPALLRPGR DR++ + LP+ + R + +H +
Sbjct: 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI---LKVHMRRVPLA 201
Query: 400 GEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ID + + + F+GADL N+ EA LFA R + V+ +F KA K+
Sbjct: 202 PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252
Score = 236 bits (603), Expect = 3e-73
Identities = 78/175 (44%), Positives = 112/175 (64%)
Query: 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGES 568
L P FQ++G PKG L+ GPPGTGKTLLA+A+A + F + S V+ ++G
Sbjct: 30 YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 89
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
A +R+MF A+ PCIIF+DEIDA+G +R + E ++TL ++L +MDGF+
Sbjct: 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEI 683
+ +I ATNRPD LDPALLRPGR DR++ + LP+ + R +ILK+H + +I
Sbjct: 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI 204
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 281 bits (720), Expect = 2e-90
Identities = 104/285 (36%), Positives = 145/285 (50%), Gaps = 40/285 (14%)
Query: 163 EDPGDITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLA 222
E P +T+ + G E EL+E++E L NP F +G PKG LL GPPG GKT LA
Sbjct: 2 EAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59
Query: 223 RAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIG 282
RAVA + F+ S V+ ++G
Sbjct: 60 RAVAGEARVPFITASGS-----------------------------------DFVEMFVG 84
Query: 283 ESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDS 342
A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 85 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 144
Query: 343 LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEI 402
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R + IHA ++
Sbjct: 145 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI---LRIHARGKPLAEDV 201
Query: 403 DYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAV 447
D + K + F GADL N+ EA L A R R +T +D +A
Sbjct: 202 DLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 246
Score = 230 bits (589), Expect = 2e-71
Identities = 80/175 (45%), Positives = 110/175 (62%)
Query: 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGES 568
L NP F +G PKG LL GPPG GKT LARAVA + F+ S V+ ++G
Sbjct: 27 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 86
Query: 569 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 628
A +R++F A+ H PCI+F+DEIDA+G +R S + E ++TL +LL +MDGF+
Sbjct: 87 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 146
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEI 683
+ ++ ATNRPD LDPALLRPGR DR+I I P+ + R +IL+IHA ++
Sbjct: 147 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 201
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 220 bits (560), Expect = 6e-67
Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 62/323 (19%)
Query: 167 DITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVA 226
+T+ IGGL + REL+E+++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A
Sbjct: 3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 62
Query: 227 SQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR 286
++ ANF+ + ++ + GES
Sbjct: 63 NECQANFISIKGP-----------------------------------ELLTMWFGESEA 87
Query: 287 LIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 346
+RE+F+ AR PC++F DE+D+I R R + ++L +MDG + V
Sbjct: 88 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 147
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
+I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+A + ++D E
Sbjct: 148 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK---ANLRKSPVAKDVDLEF 204
Query: 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEA 466
+ K+++ F+GADL +C A AIR E + + + +
Sbjct: 205 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAME------------- 251
Query: 467 GLFAIRSEREYVTQEDFMKAVRK 489
V ++D + +R+
Sbjct: 252 -----------VEEDDPVPEIRR 263
Score = 176 bits (448), Expect = 4e-51
Identities = 76/204 (37%), Positives = 122/204 (59%)
Query: 497 ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
+ K + + +++ P+ +P+ F + G+TP KG L YGPPG GKTLLA+A+A++ ANF+ +
Sbjct: 14 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 73
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616
++ + GES +RE+F+ AR PC++F DE+D+I R R + +
Sbjct: 74 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 133
Query: 617 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGP 676
+L +MDG + V +I ATNRPD +DPA+LRPGRLD+ I IPLP+E++R+ ILK +
Sbjct: 134 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 193
Query: 677 IAKHGEIGDAATKWVLPFTAGGFI 700
++ + +G +
Sbjct: 194 SPVAKDVDLEFLAKMTNGFSGADL 217
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 182 bits (462), Expect = 3e-53
Identities = 100/322 (31%), Positives = 153/322 (47%), Gaps = 64/322 (19%)
Query: 168 ITYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVAS 227
+ Y +GG +Q+ +++E++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 228 QLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARL 287
+ A F + I+ K GES
Sbjct: 61 ETGAFFFLI-----------------------------------NGPEIMSKLAGESESN 85
Query: 288 IREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK 347
+R+ F A + P IIF+DE+DAI +R + +R + +LL MDG V
Sbjct: 86 LRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVERRIVSQLLTLMDGLKQRAHVI 142
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
++ ATNRP+++DPAL R GR DR+++I +P+ RL H + ++D E V
Sbjct: 143 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI---HTKNMKLADDVDLEQV 199
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDNKKLDHCNSYRTEAG 467
+ GADL +C+EA L AIR + + + ED ++
Sbjct: 200 ANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLA------------- 246
Query: 468 LFAIRSEREYVTQEDFMKAVRK 489
VT +DF A+ +
Sbjct: 247 ----------VTMDDFRWALSQ 258
Score = 140 bits (353), Expect = 4e-38
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 3/205 (1%)
Query: 497 ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
+ K ++ELPL +P LF+ +G+ PP+G LLYGPPGTGKTL+ARAVA++ A F +
Sbjct: 11 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 70
Query: 557 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 616
I+ K GES +R+ F A + P IIF+DE+DAI +R + +R + +
Sbjct: 71 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVERRIVSQ 127
Query: 617 LLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGP 676
LL MDG V ++ ATNRP+++DPAL R GR DR+++I +P+ RLEIL+IH
Sbjct: 128 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 187
Query: 677 IAKHGEIGDAATKWVLPFTAGGFIY 701
+ ++ G +
Sbjct: 188 MKLADDVDLEQVANETHGHVGADLA 212
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 173 bits (440), Expect = 3e-49
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 10/196 (5%)
Query: 492 DNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLL-YGPPGTGKTLLARAVASQL-- 548
K+ EL +P + + G G ++ G +GKT L A+ L
Sbjct: 90 FMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGG 149
Query: 549 DANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 608
+ V + Y + + ++ Q +I +D + + G TS
Sbjct: 150 KDKYATVRFGEPLSGYNTDFNVFVDDIARAML--QHRVIVIDSLKNVIGAAGGNTTSGGI 207
Query: 609 EIQRTLMELLNQMDGFDSLGQVKMIMATNR---PDTLDPALLRPGRLDRKIEIPLPNEQA 665
R +LL+ + + +I + N D + + R + + +
Sbjct: 208 S--RGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDG 265
Query: 666 RLEILKIHAGPIAKHG 681
++L + +
Sbjct: 266 EWQVLTRTGEGLQRLT 281
Score = 169 bits (429), Expect = 1e-47
Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 68/303 (22%)
Query: 163 EDPGDITYSAIGGLSEQIRELRE--VIELPLLNPELFQRVGITPPKGCLL-YGPPGTGKT 219
+ + G + + R EL +P + + G G ++ G +GKT
Sbjct: 78 DGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKT 137
Query: 220 LLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYS---SAI 276
L A+ L + +
Sbjct: 138 PLVHALGEALGGKD------------------------------------KYATVRFGEP 161
Query: 277 VDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 336
+ Y + + ++ Q +I +D + + G TS R +LL+
Sbjct: 162 LSGYNTDFNVFVDDIARAML--QHRVIVIDSLKNVIGAAGGNTTSGGIS--RGAFDLLSD 217
Query: 337 MDGFDSLGQVKMIMATNR---PDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHA 393
+ + +I + N D + + R + + +
Sbjct: 218 IGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQ--------- 268
Query: 394 GPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453
+ + GE + + L+ E + I + ++ ++ KA++ V N
Sbjct: 269 -VLTRTGE-GLQRL--------THTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKN 318
Query: 454 KKL 456
+L
Sbjct: 319 DEL 321
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 119 bits (299), Expect = 8e-30
Identities = 35/329 (10%), Positives = 74/329 (22%), Gaps = 63/329 (19%)
Query: 138 LDMTTLTIMRYLPREVDPLVYNMSHEDPGDITYSAIGGLSEQIRELR----EVIELPLLN 193
+D LT + L + L+ M + I + L ++ +
Sbjct: 85 VDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSAD-IEEWMAGVAWLHCLLPKMDSVVYDF 143
Query: 194 PELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMG 253
+ I + L GP +GKT LA A+ L V L + E
Sbjct: 144 LKCMVY-NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFE------- 195
Query: 254 NQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMF------NYARNHQPCIIFMDE 307
+G + +F P ++
Sbjct: 196 ---------------------------LGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 228
Query: 308 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGR 367
+D + + + I+ N R
Sbjct: 229 LDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------GIVTMNE---YSVPKTLQAR 275
Query: 368 LDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAG 427
++I+ + + I + ++ L A+
Sbjct: 276 FVKQIDFRPKDYLKHCLERSEFLLEKRII----QSGIALLLMLIWYRPVAEFAQSIQSRI 331
Query: 428 LFAIRSEREYVTQEDFMKAVRKVSDNKKL 456
+ + + + K V+ +
Sbjct: 332 VEWKERLDKEFSLSVYQKMKFNVAMGIGV 360
Score = 102 bits (254), Expect = 5e-24
Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 22/184 (11%)
Query: 499 KLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS 558
+ + + I + L GP +GKT LA A+ L V
Sbjct: 130 HCLLPKMDSVVYDFLKCMVY-NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP 188
Query: 559 AIVDKY-IGESARLIREMF------NYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 611
+ +G + +F P ++ +D + +
Sbjct: 189 LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKH 248
Query: 612 RTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR-LEIL 670
+ I+ N R ++I+ + LE
Sbjct: 249 LNKRTQIFPP----------GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERS 295
Query: 671 KIHA 674
+
Sbjct: 296 EFLL 299
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 110 bits (274), Expect = 1e-27
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 505 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 564
V++ L + + TP LL GPP +GKT LA +A + + F+K+ S + +
Sbjct: 21 VLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF 80
Query: 565 IGES-ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 623
+ + ++++F+ A Q + +D+I+ + R L LL +
Sbjct: 81 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKK 136
Query: 624 FDSLGQVK-MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
G+ +I T+R D L + I + PN ++L+
Sbjct: 137 APPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQLLEAL 184
Score = 91.2 bits (225), Expect = 3e-21
Identities = 41/271 (15%), Positives = 81/271 (29%), Gaps = 48/271 (17%)
Query: 173 IGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 232
+ G+ + + V++ L + + TP LL GPP +GKT LA +
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKI------- 60
Query: 233 FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES-ARLIREM 291
+ S + + + + ++++
Sbjct: 61 ----------------------------AEESNFPFIKICSPDKMIGFSETAKCQAMKKI 92
Query: 292 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVK-MIM 350
F+ A Q + +D+I+ + R L LL + G+ +I
Sbjct: 93 FDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIG 148
Query: 351 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKL 410
T+R D L + I +P +L G VK
Sbjct: 149 TTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLE---ALELLGNFKDKERTTIAQQVKG 204
Query: 411 SDSFNGADLRNVCTEAGLFAIRSEREYVTQE 441
+ G + E +++ + EY ++
Sbjct: 205 KKVWIGIKKLLMLIEM---SLQMDPEYRVRK 232
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 106 bits (265), Expect = 3e-26
Identities = 27/283 (9%), Positives = 69/283 (24%), Gaps = 60/283 (21%)
Query: 176 LSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 235
L++ + EL + + + P LL G PG+GKT L A+ + N +
Sbjct: 15 LNDNLEELIQ------------GKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 236 VVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYA 295
+ + F + +++ +
Sbjct: 63 IDNDTFKQQHP--------------------------------NFDELVKLYEKDVVKHV 90
Query: 296 RNHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQ------MDGFDSLGQVK 347
+ + EGT ++ +L M
Sbjct: 91 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 150
Query: 348 MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAV 407
+ R +T+ R K + + + +
Sbjct: 151 YLGTIERYETMYADDPMTARATPKQAHDIVVKNLP-TNLETLHKTGLFSDIRLYNR---- 205
Query: 408 VKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ ++ + ++ + L V+ ++ + ++
Sbjct: 206 -EGVKLYSSLETPSISPKETLEKEL--NRKVSGKEIQPTLERI 245
Score = 106 bits (264), Expect = 5e-26
Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 11/181 (6%)
Query: 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD---KYIGESARLIRE 574
+ + P LL G PG+GKT L A+ + N + + + + ++
Sbjct: 26 KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKD 85
Query: 575 MFNYARNHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQ------MDGFDS 626
+ + + + EGT ++ +L M
Sbjct: 86 VVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAV 145
Query: 627 LGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDA 686
+ R +T+ R K + + + +H + + +
Sbjct: 146 PKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNR 205
Query: 687 A 687
Sbjct: 206 E 206
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 95.6 bits (236), Expect = 2e-22
Identities = 30/292 (10%), Positives = 71/292 (24%), Gaps = 54/292 (18%)
Query: 175 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 234
+Q+++L ++ L NP L G PGTGKT+ R +
Sbjct: 20 HREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKT- 71
Query: 235 KVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNY 294
+ + +
Sbjct: 72 ------------------------------TARFVYINGFIYRNFTAIIGEIARSLNIPF 101
Query: 295 ARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR------TLMELLNQMDGFDSLGQVKM 348
R F+ + R + + L Q ++ +
Sbjct: 102 PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 161
Query: 349 IMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA--RLAHTWPISIHAGPIAKHGEIDYEA 406
++ + L+ + K I + + E +
Sbjct: 162 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 221
Query: 407 VVKLSDSFNGADL--------RNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ ++ + D ++ + A ++ R+++ ED K+ ++V
Sbjct: 222 IADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 273
Score = 74.8 bits (182), Expect = 2e-15
Identities = 24/187 (12%), Positives = 46/187 (24%), Gaps = 12/187 (6%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQL----DANFLKVVSSAIVDKYIGESARLIREMFNY 578
L G PGTGKT+ R + A F+ + + +
Sbjct: 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF 101
Query: 579 ARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR------TLMELLNQMDGFDSLGQVKM 632
R F+ + R + + L Q ++ +
Sbjct: 102 PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 161
Query: 633 IMATNRPDTLDPALLRPGRLDRKIEIPLPNEQA--RLEILKIHAGPIAKHGEIGDAATKW 690
++ + L+ + K I +IL A G + +
Sbjct: 162 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 221
Query: 691 VLPFTAG 697
+ T
Sbjct: 222 IADITGA 228
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 94.8 bits (234), Expect = 4e-22
Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 20/281 (7%)
Query: 175 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 234
+ L + LL+ V + G G GKT LA+ ++
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEA-- 73
Query: 235 KVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNY 294
+ N + + + I + L + N
Sbjct: 74 ------AAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 127
Query: 295 ARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR 354
+ ++ +DE ++ + D + E + DG + +G + +
Sbjct: 128 YVENHYLLVILDEFQSMLSSPRI--AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA 185
Query: 355 PDTLDPALLRP-GRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEAVVKLSDS 413
+ + + ++ K+ +P + + E + +
Sbjct: 186 LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 245
Query: 414 FNGA-----DLRNVCTEAGLFAIRSEREYVTQEDFMKAVRK 449
G A A R+ ++++ KAV +
Sbjct: 246 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286
Score = 55.9 bits (133), Expect = 5e-09
Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 34/215 (15%)
Query: 505 VIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 564
+ LL+ V + G G GKT LA+ ++ K +
Sbjct: 31 IYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 86
Query: 565 IGESARLIREMF---------------------------NYARNHQPCIIFMDEIDAIGG 597
+A + + N + ++ +DE ++
Sbjct: 87 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS 146
Query: 598 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRP-GRLDRKI 656
+ D + E + DG + +G + + + + + ++ K+
Sbjct: 147 SPRI--AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKL 204
Query: 657 EIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWV 691
+P + IL+ A + + +
Sbjct: 205 HLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 239
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 86.2 bits (212), Expect = 2e-19
Identities = 52/284 (18%), Positives = 90/284 (31%), Gaps = 57/284 (20%)
Query: 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 228
T G ++LR +E E P + LL+GPPG GKT LA +A +
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 229 LDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLI 288
L N +S + G+ A ++
Sbjct: 59 LGVNL-------------------------------------RVTSGPAIEKPGDLAAIL 81
Query: 289 REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA--DREIQRTLMELLNQMDGFDSLGQV 346
+ I+F+DEI + + A D + + + L +
Sbjct: 82 ANSL-----EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 136
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
+I AT RP + LL + +E P E A+ + E E
Sbjct: 137 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQ---GVMRDARLLGVRITEEAALE- 192
Query: 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKV 450
+ + S + + FA + E +T+E ++A+ +
Sbjct: 193 IGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 235
Score = 82.3 bits (202), Expect = 3e-18
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 516 FQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREM 575
+ P + LL+GPPG GKT LA +A +L N V+S + G+ A ++
Sbjct: 27 AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL--RVTSGPAIEKPGDLAAILANS 84
Query: 576 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSA--DREIQRTLMELLNQMDGFDSLGQVKMI 633
+ I+F+DEI + + A D + + + L + +I
Sbjct: 85 L-----EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 139
Query: 634 MATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGE 682
AT RP + LL + +E P E A+ + + E
Sbjct: 140 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE 188
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 84.1 bits (207), Expect = 3e-18
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK--YIGESARLIREMFNYA- 579
PK L+ GP G GKT +AR +A +A F+KV ++ + E +IR++ + A
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAG 107
Query: 580 ----RNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 635
Q I+F+DEID I + G RE +LL ++G + M+
Sbjct: 108 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSRE--GVQRDLLPLVEGSTVSTKHGMVKT 165
Query: 636 TN------------RPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
+ RP L P L GRL ++E+ + IL
Sbjct: 166 DHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTEP 213
Score = 69.9 bits (170), Expect = 1e-13
Identities = 44/221 (19%), Positives = 70/221 (31%), Gaps = 45/221 (20%)
Query: 175 GLSEQIRELREVIELPLLNPELFQRV-GITPPKGCLLYGPPGTGKTLLARAVASQLDANF 233
G ++ R + + +L + + PK L+ GP G GKT +AR +A +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 234 LKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFN 293
+E T F +
Sbjct: 78 ----------------------------IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 109
Query: 294 YARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATN 353
Q I+F+DEID I + G RE +LL ++G + M+ +
Sbjct: 110 IDAVEQNGIVFIDEIDKICKKGEYSGADVSRE--GVQRDLLPLVEGSTVSTKHGMVKTDH 167
Query: 354 ------------RPDTLDPALLRPGRLDRKIEIPLPNEQAR 382
RP L P L GRL ++E+ +
Sbjct: 168 ILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADF 206
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 61.1 bits (147), Expect = 5e-11
Identities = 43/280 (15%), Positives = 79/280 (28%), Gaps = 58/280 (20%)
Query: 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 228
+ G ++L +E + E LL GPPG GKT LA +AS+
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGE--------VLDHVLLAGPPGLGKTTLAHIIASE 58
Query: 229 LDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLI 288
L N +S V G+ A ++
Sbjct: 59 LQTNI-------------------------------------HVTSGPVLVKQGDMAAIL 81
Query: 289 REMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSA--DREIQRTLMELLNQMDGFDSLGQV 346
+ + ++F+DEI + SA D +I + + + +
Sbjct: 82 TSL------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 135
Query: 347 KMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYEA 406
++ AT R L P R I + L + + + + E
Sbjct: 136 TLVGATTRS----GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEM 191
Query: 407 VVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKA 446
+ K S + + + + + +K
Sbjct: 192 IAKRSR-GTPRIAIRLTKRVRDMLTVVKADRINTDIVLKT 230
Score = 51.9 bits (123), Expect = 7e-08
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 12/153 (7%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
LL GPPG GKT LA +AS+L N V+S V G+ A ++ +
Sbjct: 34 VLDHVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVLVKQGDMAAILTSL------E 85
Query: 583 QPCIIFMDEIDAIGGRRFSEGTSA--DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 640
+ ++F+DEI + SA D +I + + + + ++ AT R
Sbjct: 86 RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG 145
Query: 641 TLDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
L L R +E+ + EI+K
Sbjct: 146 LLSSPLRS--RFGIILELDFYTVKELKEIIKRA 176
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 50.9 bits (120), Expect = 2e-07
Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 54/290 (18%)
Query: 169 TYSAIGGLSEQIRELREVIELPLLNPE----LFQRVGITPPKGCLLYGPPGTGKTLLARA 224
+ G + +L+ + + + + G + +LYGPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 225 VASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGES 284
VA +L + L+ +S + A +
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNAGVK-------------------------------- 99
Query: 285 ARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG 344
N N F +A I ++ ++ D
Sbjct: 100 --------NALDNMSVVGYFKHNEEAQNLN------GKHFVIIMDEVDGMSGGDRGGVGQ 145
Query: 345 QVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWPISIHAGPIAKHG-EID 403
+ T+ P L ++ + L + R S + ++D
Sbjct: 146 LAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 205
Query: 404 YEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQEDFMKAVRKVSDN 453
+ +L + G D+R V L I + + + E+ + + N
Sbjct: 206 PNVIDRLIQTTRG-DIRQVINL--LSTISTTTKTINHENINEISKAWEKN 252
Score = 39.8 bits (91), Expect = 8e-04
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 13/165 (7%)
Query: 476 EYVTQEDFMKAVRKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGT 535
+ + + ++ N + K +K + G + +LYGPPG
Sbjct: 15 QVCGNKGSVMKLKNWLANWENSKKNSFK-----------HAGKDGSGVFRAAMLYGPPGI 63
Query: 536 GKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 595
GKT A VA +L + L+ +S + K + + ++ + + +
Sbjct: 64 GKTTAAHLVAQELGYDILEQNASDVRSKTLLNAG--VKNALDNMSVVGYFKHNEEAQNLN 121
Query: 596 GGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPD 640
G D + +++ R
Sbjct: 122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNL 166
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 49.8 bits (118), Expect = 9e-07
Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 19/228 (8%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTS--KEDMAILMGNQLKRRSTH 262
PK L+ GP G GKT +AR +A +A F+KV ++ F + L +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 108
Query: 263 HLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGR---RFSEG 319
+ + + A + E R++ + A+N + D + + EG
Sbjct: 109 LVRQQEI-AKNRARAEDVAEE--RILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREG 165
Query: 320 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP---- 375
D+EI+ + G + + M TN+ +L L RK++I
Sbjct: 166 QLDDKEIEIDVSA--GVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 223
Query: 376 --LPNEQARLAHTWPISIHAGPIAKHG---EIDYEAVVKLSDSFNGAD 418
+ +E A+L + + A + ID + ++GAD
Sbjct: 224 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGAD 271
Score = 48.6 bits (115), Expect = 2e-06
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583
PK L+ GP G GKT +AR +A +A F+KV A +G + + + +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV--EATKFTEVGYVGKEVDSIIRDLTDSA 106
Query: 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLD 643
++ EI R + D +R L LL + ++ R
Sbjct: 107 MKLVRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRK 160
Query: 644 PALLRPGRLDRK 655
LR G+LD K
Sbjct: 161 --KLREGQLDDK 170
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 49.1 bits (116), Expect = 1e-06
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 20/160 (12%)
Query: 478 VTQEDFMKAV--------RKVSDNKKLESKLDYKPVIELPLLNPELFQRVGITPPKGCLL 529
+ QE K +++S +KL+ + + +EL L LL
Sbjct: 20 IGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE------VELSKSNILL 73
Query: 530 YGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI------GESARLIREMFNYARNHQ 583
GP G+GKTL+A+ +A LD ++++ + RL++ + Q
Sbjct: 74 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ 133
Query: 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG 623
I+F+DEID I + + D + LL ++G
Sbjct: 134 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 173
Score = 39.4 bits (91), Expect = 0.001
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 29/136 (21%)
Query: 204 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHH 263
LL GP G+GKTL+A+ +A LD + ++ + +
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS---------DATSLTEAGYVGEDVENI 117
Query: 264 LEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSAD 323
L RL++ + Q I+F+DEID I + + D
Sbjct: 118 LT--------------------RLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD 157
Query: 324 REIQRTLMELLNQMDG 339
+ LL ++G
Sbjct: 158 VSGEGVQQALLKIVEG 173
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 46.7 bits (109), Expect = 4e-06
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE----MFNYARNH 582
L+ G TGK+ + + ++L+ ++ + ++ + E + +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 621
+ + I I + +R+ + + LL
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESF 130
Score = 38.2 bits (87), Expect = 0.002
Identities = 8/59 (13%), Positives = 24/59 (40%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEK 266
L+ G TGK+ + + ++L+ ++ + F +L++ +++
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKR 90
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 45.3 bits (106), Expect = 2e-05
Identities = 31/288 (10%), Positives = 68/288 (23%), Gaps = 16/288 (5%)
Query: 207 GCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEK 266
G L++G GTGK+ RA+A+ L ++ V V+S I + +
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLPE--IEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPT 87
Query: 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREI 326
D+ +G + + + + ++
Sbjct: 88 PVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANR-GYLYIDECNLLEDHIVDL 146
Query: 327 QRTLMELLNQMDGFDSLGQVK----MIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 382
+ + + D L +++ + P+ D R +E+ P +
Sbjct: 147 LLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV-- 204
Query: 383 LAHTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
+ + E L + A +
Sbjct: 205 -ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC 263
Query: 443 FMKAVRKVSDNKKLDHCNSYRTEAGLFAIRSEREYVTQEDFMKAVRKV 490
+ L A A V ++ +
Sbjct: 264 IALGSDGLRGELTLLRS------ARALAALEGATAVGRDHLKRVATMA 305
Score = 39.9 bits (92), Expect = 8e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 526 GCLLYGPPGTGKTLLARAVASQLD 549
G L++G GTGK+ RA+A+ L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLP 53
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 44.2 bits (104), Expect = 3e-05
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 31/171 (18%)
Query: 528 LLYGPPGTGKTLLARAVASQLDAN------------FLKVVSSAIVDKYIGESARLIREM 575
LL G G GKT +A +A ++ L + S KY G+ + + +
Sbjct: 43 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 102
Query: 576 FNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMA 635
I+F+DEI I G + G D N + S G++++I +
Sbjct: 103 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---------AANLIKPLLSSGKIRVIGS 153
Query: 636 TNRPDTL------DPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH 680
T D AL R R +KI+I P+ + ++I+ H
Sbjct: 154 TT-YQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAH 200
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 43.0 bits (101), Expect = 3e-05
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 35/194 (18%)
Query: 497 ESKLDYKPVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQL-------- 548
+ KLD PVI Q + +L G PG GKT + +A ++
Sbjct: 18 QGKLD--PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 75
Query: 549 --DANFLKVVSSAIV--DKYIGE-SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 603
L + A+V KY GE RL + + A+ I+F+DE+ + G ++G
Sbjct: 76 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG 135
Query: 604 TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL------DPALLRPGRLDRKIE 657
M+ N + + G++ + AT D D AL R R +K+
Sbjct: 136 A----------MDAGNMLKPALARGELHCVGATT-LDEYRQYIEKDAALER--RF-QKVF 181
Query: 658 IPLPNEQARLEILK 671
+ P+ + + IL+
Sbjct: 182 VAEPSVEDTIAILR 195
Score = 31.4 bits (71), Expect = 0.25
Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 44/193 (22%)
Query: 195 ELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGN 254
Q + +L G PG GKT + +A ++ +V L + +A+ MG
Sbjct: 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING--EVPEGLK--GRRVLALDMGA 88
Query: 255 QLKRRSTHHLEKTYFPFYSSAIVDKYIGE-SARLIREMFNYARNHQPCIIFMDEIDAIGG 313
+ KY GE RL + + A+ I+F+DE+ + G
Sbjct: 89 LVAG-------------------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 129
Query: 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL------DPALLRPGR 367
++G M+ N + + G++ + AT D D AL R R
Sbjct: 130 AGKADGA----------MDAGNMLKPALARGELHCVGATT-LDEYRQYIEKDAALER--R 176
Query: 368 LDRKIEIPLPNEQ 380
+K+ + P+ +
Sbjct: 177 F-QKVFVAEPSVE 188
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/128 (10%), Positives = 29/128 (22%)
Query: 531 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590
GTGKT L + + L A ++ + I+
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQ 68
Query: 591 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPG 650
+ A+ E + + + + + ++ D
Sbjct: 69 QRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELV 128
Query: 651 RLDRKIEI 658
I +
Sbjct: 129 IDRHVIAV 136
Score = 36.9 bits (84), Expect = 0.003
Identities = 13/96 (13%), Positives = 32/96 (33%)
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GTGKT L + + L A ++ D+ + + R +
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQ 68
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDE 307
A++ + E ++ + + + +I ++
Sbjct: 69 QRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 42.4 bits (99), Expect = 1e-04
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 34/192 (17%)
Query: 528 LLYGPPGTGKTLLARAVASQL----------DANFLKVVSSAIVDKYIGE---SARLIRE 574
+L G PG GKT + +A ++ + + +++ RL
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 106
Query: 575 MFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 634
+ ++ I+F+DE+ + G +EG ++ N + + G++++I
Sbjct: 107 IQEVVQSQGEVILFIDELHTVVGAGKAEGA----------VDAGNMLKPALARGELRLIG 156
Query: 635 ATNRPDTL-----DPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH--GEIGDAA 687
AT D DPAL R R + + + P + + IL+ H I D+A
Sbjct: 157 ATT-LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSA 212
Query: 688 TKWVLPFTAGGF 699
+
Sbjct: 213 IIAAATLSHRYI 224
Score = 32.7 bits (74), Expect = 0.17
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 38/161 (23%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
+L G PG GKT + +A ++ V L K +++ MG+ L
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKG--DVPEGL--KGKRIVSLQMGSLLAGAKYRG----- 97
Query: 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328
RL + ++ I+F+DE+ + G +EG
Sbjct: 98 -------------EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-------- 136
Query: 329 TLMELLNQMDGFDSLGQVKMIMATNRPDTL-----DPALLR 364
++ N + + G++++I AT D DPAL R
Sbjct: 137 --VDAGNMLKPALARGELRLIGATT-LDEYREIEKDPALER 174
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 40.4 bits (94), Expect = 3e-04
Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 26/158 (16%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD---KYIG-ESARLIREMFNYA-RNH 582
L+ G + ++ + ++ K +D + IG + R I++ NY+ +
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELY 78
Query: 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642
+ + + + + T +E + +++ T R L
Sbjct: 79 TRKYVIVHDCERM--------TQQAANAFLKALEEPPEYA--------VIVLNTRRWHYL 122
Query: 643 DPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH 680
P + R + + + +++K G + +
Sbjct: 123 LPTI-----KSRVFRVVVNVPKEFRDLVKEKIGDLWEE 155
Score = 35.0 bits (80), Expect = 0.016
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLK 235
L+ G + ++ + ++ K
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPPK 45
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 39.7 bits (92), Expect = 6e-04
Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 39/238 (16%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHL 264
L G G GKT +AR +A L+ + ++ I G +
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGRFVDL------ 86
Query: 265 EKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324
A + ++ L+ + + + +DE+ S +
Sbjct: 87 ------IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH-----MLSRHSFN-- 133
Query: 325 EIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLA 384
LL ++ + VK ++AT P L +L +
Sbjct: 134 -------ALLKTLE--EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD--------V 176
Query: 385 HTWPISIHAGPIAKHGEIDYEAVVKLSDSFNGADLRNVCTEAGLFAIRSEREYVTQED 442
+ +H + A+ L+ + G LR+ + AI S V+ +
Sbjct: 177 EQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQ-AIASGDGQVSTQA 232
Score = 36.6 bits (84), Expect = 0.007
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 38/166 (22%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDA-------------NFLKVVSSAIVDKYIGESAR 570
L G G GKT +AR +A L+ N ++ VD ++A
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 93
Query: 571 L-----IREMFNYAR----NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 621
R++ + + + + +DE+ S + LL +
Sbjct: 94 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH-----MLSRHSFN---------ALLKTL 139
Query: 622 DGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARL 667
+ + VK ++AT P L +L + + + +L
Sbjct: 140 E--EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQL 183
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 39.3 bits (90), Expect = 6e-04
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKED----------------MAILM 252
+ G +GK++L +A+ + FV K
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70
Query: 253 GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIG 312
+ R S + A +Y G++ + M ++ +
Sbjct: 71 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD 130
Query: 313 GRRFSEGTSADREIQRTLMELLNQMD 338
G R ++ Q+ L +LL++
Sbjct: 131 GLRSLGSQKQRQQFQQLLKKLLDKYK 156
Score = 37.0 bits (84), Expect = 0.004
Identities = 7/66 (10%), Positives = 20/66 (30%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
+ G +GK++L +A+ + V + +G + ++
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70
Query: 588 FMDEID 593
+
Sbjct: 71 IDYAVR 76
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 38.9 bits (89), Expect = 8e-04
Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 13/139 (9%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVS---------SLFVTSKEDMAILMGNQLKRR 259
++ GP G GK+ + +A+QLD + +++ L +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEG 319
+ + L A+ ++ + + + I + RR +
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVD---DVEIRFIILWTNREELLRRDAL- 121
Query: 320 TSADREIQRTLMELLNQMD 338
D ++ +EL+ + +
Sbjct: 122 RKKDEQMGERCLELVEEFE 140
Score = 33.1 bits (74), Expect = 0.060
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
++ GP G GK+ + +A+QLD + + I +G A +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 588 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 625
+ + E + + ++D +
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVE 102
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 12/157 (7%)
Query: 206 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV---SSLFVTSKEDMAILMGN------QL 256
+ L GPPG GKT L + L ++ + V + + + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 257 KRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREM---FNYARNHQPCIIFMDEIDAIGG 313
R +VD E L + + C+I +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 314 RRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 350
+ F + T++ + L V+ I
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR 158
Score = 36.9 bits (84), Expect = 0.004
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVV 556
+ L GPPG GKT L + L ++ + V
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.7 bits (86), Expect = 0.002
Identities = 13/146 (8%), Positives = 36/146 (24%), Gaps = 16/146 (10%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLK------- 257
+ +L G GK+ + R + S L +L + + ++
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 258 ---------RRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308
+ + I+D A ++ + + +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD 122
Query: 309 DAIGGRRFSEGTSADREIQRTLMELL 334
A+ R + + ++
Sbjct: 123 GAVAEGRETARGDRVAGMAAKQAYVV 148
Score = 35.4 bits (80), Expect = 0.010
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIG 566
+ +L G GK+ + R + S L +L ++++
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 36.9 bits (84), Expect = 0.003
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 2/128 (1%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269
L G PG+GK+ + R +A L L + + +I +
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLDTDV--AIEQRTGRSIADIFATDGEQEFRRIEEDV 63
Query: 270 PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329
+ A D + + A +++++ A G RR T
Sbjct: 64 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPD 123
Query: 330 LMELLNQM 337
E +
Sbjct: 124 RAEKYRAL 131
Score = 33.0 bits (74), Expect = 0.066
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 529 LYGPPGTGKTLLARAVASQLDANF--LKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
L G PG+GK+ + R +A L V + I + E
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVR 65
Query: 587 IFMDEID 593
+ + D
Sbjct: 66 AALADHD 72
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 37.7 bits (86), Expect = 0.003
Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 15/176 (8%)
Query: 192 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAVASQLDANFLKVVSSLFVTSKEDM 248
LN E Q+ + +G L+ G+GKT L R +++ V +
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIA---------YLMAEKHVAPWNIL 60
Query: 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEI 308
AI N+ R ++ + + R++R + ++ I +D
Sbjct: 61 AITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSI-LDPT 119
Query: 309 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 364
D + + + +L + + A + +
Sbjct: 120 DQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSD 175
Score = 33.1 bits (74), Expect = 0.11
Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 21/175 (12%)
Query: 511 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAVASQLDANFLKVVSSAIVDKYIGE 567
LN E Q+ + +G L+ G+GKT L R ++ + +K++
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHR-------------IAYLMAEKHVAP 56
Query: 568 SARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGF--- 624
L N A + A S S I R ++ + F
Sbjct: 57 WNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSIL 116
Query: 625 DSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAK 679
D Q+ ++ + +DP P + I + K + K
Sbjct: 117 DPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEK 171
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 36.6 bits (83), Expect = 0.005
Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 13/155 (8%)
Query: 525 KGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
+GC L G G GKT ++ A+ L + + + + G + L + N
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 77
Query: 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642
+ G + S + + ++ V + +
Sbjct: 78 RRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 137
Query: 643 DPALLRPGR--------LDRKIEIPLPNEQARLEI 669
+ +D + E P E L +
Sbjct: 138 KGLYKKARAGEIKGFTGIDSEYEKP---EAPELVL 169
Score = 32.3 bits (72), Expect = 0.12
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 206 KGC--LLYGPPGTGKTLLARAVASQLDANF 233
+GC L G G GKT ++ A+ L +
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 36.7 bits (83), Expect = 0.005
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNY 578
+GI G +GKT LA ++ L + V + D + + R +
Sbjct: 25 LGID--------GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 579 ARNHQPCIIFMDEI 592
+
Sbjct: 77 FEYYYLQWDVEWLT 90
Score = 29.7 bits (65), Expect = 1.0
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 8/110 (7%)
Query: 200 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRR 259
+GI G +GKT LA ++ L + V + A +
Sbjct: 25 LGID--------GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309
++ + + + + + + + H +++ + D
Sbjct: 77 FEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSD 126
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 36.8 bits (85), Expect = 0.005
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 41/167 (24%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV----DKYIGESARLIREMFNYARNHQ 583
L+ G G GK ++AR + D + V+ + D + E + F A + +
Sbjct: 27 LITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSK 86
Query: 584 PCI--------IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG------- 628
+F+DEI + E Q L+ ++ + F LG
Sbjct: 87 EGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVI-ESGKFYRLGGRKEIEV 134
Query: 629 QVKMIMATNRPDTLDPALLRPGRLDRK-------IEIPLPNEQARLE 668
V+++ ATNR L++ G+ IEI +P + R E
Sbjct: 135 NVRILAATNRN---IKELVKEGKFREDLYYRLGVIEIEIPPLRERKE 178
Score = 36.4 bits (84), Expect = 0.007
Identities = 55/293 (18%), Positives = 97/293 (33%), Gaps = 79/293 (26%)
Query: 175 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAV--ASQLDAN 232
S +++E+ E I+ ++ L+ G G GK ++AR + S
Sbjct: 4 FESPKMKEILEKIK----------KISCAE-CPVLITGESGVGKEVVARLIHKLSDRSKE 52
Query: 233 FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMF 292
++ + A L G EK F + A+ K F
Sbjct: 53 PFVALNVASIPRDIFEAELFG----------YEKGAF---TGAVSSK---------EGFF 90
Query: 293 NYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLG-------Q 345
A +F+DEI + E Q L+ ++ + F LG
Sbjct: 91 ELADGG---TLFLDEIGEL-----------SLEAQAKLLRVI-ESGKFYRLGGRKEIEVN 135
Query: 346 VKMIMATNRPDTLDPALLRPGRLDRK-------IEIPLPNEQARLAHTWPISIHAGPIAK 398
V+++ ATNR L++ G+ IEI +P + R P++ H
Sbjct: 136 VRILAATNRN---IKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFS 192
Query: 399 HG------EIDYEAVVKLSD-SFNG--ADLRNVCTEAGLFAIRSEREYVTQED 442
A L + G +L+NV A + SE +++ + +
Sbjct: 193 RKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERA---VLFSEGKFIDRGE 242
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 37.0 bits (84), Expect = 0.007
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 192 LNPELFQRVGITPPKG-CLLYGPPGTGKT-LLARAVASQLDANFLKVVSSLFVTSKEDMA 249
LNP Q+ + G CL+ G+GKT ++ +A + + VT A
Sbjct: 2 LNPG--QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 59
Query: 250 ILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305
M ++ + + + I + N++ + +
Sbjct: 60 REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLAL 115
Score = 32.4 bits (72), Expect = 0.18
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 511 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAV 544
LNP Q+ + G CL+ G+GKT + +
Sbjct: 2 LNPG--QQQAVEFVTGPCLVLAGAGSGKTRVITNKIA 36
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 36.6 bits (83), Expect = 0.007
Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 22/221 (9%)
Query: 201 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRS 260
GI +G TGKT L+ + + + ++L+ +
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 92
Query: 261 THHLEKTYFPFYSSAIVDKYIGESARLIREM---FNYARNHQPCIIFMDEIDAIGGRRFS 317
+ Y E + + + ++ +D I A+ R
Sbjct: 93 DRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL-FRVDF 151
Query: 318 EGTSADREIQRTLMELLNQMDGFDS--------LGQVKMIMATNRPDTLDPALLRPGRL- 368
G E Q+ L ++L+++ Q+ DP G +
Sbjct: 152 SGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHIL 211
Query: 369 ----DRKIEIPLPNEQARLAHTWPISIHAGPIAKHGEIDYE 405
+I + + R+ I+ P E +
Sbjct: 212 AHASTTRISLRKGRGELRI-----AKIYDSPEMPENEATFA 247
Score = 30.1 bits (66), Expect = 0.79
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579
GI +G TGKT L+ + + E+ + + A
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 92
Query: 580 RNH 582
Sbjct: 93 DRF 95
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.9 bits (81), Expect = 0.008
Identities = 22/128 (17%), Positives = 41/128 (32%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269
L GP G GK+ + R +A QL+ F + + D+ + + + EK
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVIN 66
Query: 270 PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 329
+ G + RE N + I+ R + ++
Sbjct: 67 ELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETP 126
Query: 330 LMELLNQM 337
E+L +
Sbjct: 127 PREVLEAL 134
Score = 34.7 bits (78), Expect = 0.016
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 529 LYGPPGTGKTLLARAVASQLDANF--LKVVSSAIVDKYIGESARLIREMFNYARNHQPCI 586
L GP G GK+ + R +A QL+ F +G L E R +
Sbjct: 7 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVIN 66
Query: 587 IFMDEIDAI 595
++ +
Sbjct: 67 ELTEKQGIV 75
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 35.8 bits (81), Expect = 0.008
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 523 PPKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD---KYIGESARLIREMFN 577
+G L G +GK +ARA+ L+ + VS + D + RE +
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62
Query: 578 YARNHQPCIIFMDE 591
+
Sbjct: 63 TNIQRIAFVATELT 76
Score = 35.5 bits (80), Expect = 0.013
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 204 PPKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSSLF---VTSKEDMAILMGNQLKR 258
+G L G +GK +ARA+ L+ + VS L V + + + +
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62
Query: 259 RSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
+ + + + F Q F+ +
Sbjct: 63 TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATP 115
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 35.9 bits (81), Expect = 0.011
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
LLYGP GTGK A+ + + + + + P +
Sbjct: 37 LLYGPNGTGKKTRCMALLESIFGPGVY-----RLKIDVRQFVTASNRKLELNVVSSPYHL 91
Query: 588 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 634
+ D R Q ++ + DG + +I
Sbjct: 92 EITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIIN 138
Score = 35.2 bits (79), Expect = 0.020
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 169 TYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQ 228
+ +A+ E L+ + + P P L LLYGP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMALLES 56
Query: 229 LDANFL 234
+ +
Sbjct: 57 IFGPGV 62
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.3 bits (80), Expect = 0.012
Identities = 23/201 (11%), Positives = 48/201 (23%), Gaps = 40/201 (19%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
LL G PG+GK+ +A A+A+ + + +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHF------------HSDDLWGYIK--------HG 47
Query: 588 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALL 647
+D + ++ + + + + G ++ RPD L
Sbjct: 48 RIDPWLPQ----------SHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTA 97
Query: 648 RPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLPFTAGGFIYIATVSV 707
L + E +E G + A +
Sbjct: 98 LARPLHYIVLRTTAAE--AIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPV--- 152
Query: 708 IPELLEDTSPKQTVKEILALL 728
Q ++ + L
Sbjct: 153 -----SGKDTDQALQSAINAL 168
Score = 34.5 bits (78), Expect = 0.020
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMG 253
LL G PG+GK+ +A A+A+ + S + I
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPW 52
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.7 bits (81), Expect = 0.013
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 7/138 (5%)
Query: 201 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRS 260
G L G GTGKTLL AN + + + S+ +
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNA-YSWGMDF 80
Query: 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320
+ + + + ++I+ I A G
Sbjct: 81 EEMERQNLLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAIDSLSALARGVSN----- 134
Query: 321 SADREIQRTLMELLNQMD 338
+A R+ + Q +
Sbjct: 135 NAFRQFVIGVTGYAKQEE 152
Score = 31.1 bits (69), Expect = 0.43
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQL 548
G L G GTGKTLL
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVENA 50
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 35.5 bits (80), Expect = 0.014
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 23/185 (12%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR--- 580
L+ PG G L A++ L + S + +
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK 83
Query: 581 --------NHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKM 632
+ ++E +GG + T A LL ++ + +
Sbjct: 84 GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPA--ETWF 141
Query: 633 IMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVL 692
+AT P+ L L RL + P EQ + L + + A L
Sbjct: 142 FLATREPERLLATLRSRCRL---HYLAPPPEQYAVTWLS-------REVTMSQDALLAAL 191
Query: 693 PFTAG 697
+AG
Sbjct: 192 RLSAG 196
Score = 35.1 bits (79), Expect = 0.016
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 205 PKGCLLYGPPGTGKTLLARAVA 226
L+ PG G L A++
Sbjct: 24 HHALLIQALPGMGDDALIYALS 45
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 35.5 bits (80), Expect = 0.016
Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 201 GITPPKGCLLYGPPGTGKTLL----ARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQL 256
GI ++G TGKT + A +D + + T +
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 257 KRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNY---ARNHQPCIIFMDEIDAIGG 313
+R + Y+ A + + M A + D G
Sbjct: 79 ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 138
Query: 314 RRFSEGTSADREIQRTLMELLNQMD 338
S R L+ L ++
Sbjct: 139 GELSARQMHLARFLRMLLRLADEFG 163
Score = 33.2 bits (74), Expect = 0.080
Identities = 10/72 (13%), Positives = 19/72 (26%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579
GI ++G TGKT + +A + E + A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 580 RNHQPCIIFMDE 591
+ + +
Sbjct: 79 ERYGLSGSDVLD 90
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 35.0 bits (79), Expect = 0.026
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 9/142 (6%)
Query: 201 GITPPKGCLLYGPPGTGKTLL----ARAVASQLDANFLKVVSSLFV--TSKEDMAILMGN 254
+ L P G GK++L A +A D + + + V ED + +
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHH 84
Query: 255 QLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIRE---MFNYARNHQPCIIFMDEIDAI 311
+L H + ++ IG ++ ++ +D +
Sbjct: 85 RLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRF 144
Query: 312 GGRRFSEGTSADREIQRTLMEL 333
+ + I R
Sbjct: 145 HIEEENASGPMAQVIGRMEAIA 166
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 503 KPVIELPLLN--PELFQRV--GITPPKGCLLYGPPGTGKTLLARAVASQL 548
KP+ L P V + L P G GK++LA +A+Q+
Sbjct: 4 KPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.8 bits (76), Expect = 0.032
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 5/132 (3%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYF 269
+ G G G T + R +A L F+ + TS +A ++ + +
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQ 66
Query: 270 PFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTS-----ADR 324
+ V G L + + +F + + S R
Sbjct: 67 AVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGR 126
Query: 325 EIQRTLMELLNQ 336
I + +L +
Sbjct: 127 PIAEEMEAVLRE 138
Score = 32.2 bits (72), Expect = 0.12
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFL 553
+ G G G T + R +A L F+
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFV 31
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 34.1 bits (77), Expect = 0.037
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 351 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTW 387
+T L P L+ + P P+ A+ H W
Sbjct: 1 STPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGW 37
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.5 bits (75), Expect = 0.041
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
+L G G+GK+ +A VA QL A FL
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDG 37
Score = 33.5 bits (75), Expect = 0.041
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKV 555
+L G G+GK+ +A VA QL A FL
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 33.6 bits (77), Expect = 0.053
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 203 TPPKGCL-LYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245
TP K CL GP TGK+ + +F++ FV S
Sbjct: 50 TPKKNCLVFCGPANTGKSYFGMSF-----IHFIQGAVISFVNST 88
Score = 33.3 bits (76), Expect = 0.071
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 522 TPPKGCL-LYGPPGTGKTLLARAVASQLDANFLKVVSS 558
TP K CL GP TGK+ + + + V+S
Sbjct: 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS 87
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 34.1 bits (77), Expect = 0.056
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 199 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLF-VTSKEDMAILMGNQLK 257
R+G+T G PG GK+ A L LKV +S ++G++ +
Sbjct: 56 RLGVT--------GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTR 107
Query: 258 RRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309
E + S ++G +++ RE+ ++ ++ +
Sbjct: 108 MNDLARAEAAFIRPVPS---SGHLGGASQRARELMLLCEAAGYDVVIVETVG 156
Score = 32.1 bits (72), Expect = 0.24
Identities = 21/130 (16%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFN 577
R+G+T G PG GK+ A L LKV A VD + I
Sbjct: 56 RLGVT--------GTPGAGKSTFLEAFGMLLIREGLKVAVIA-VDPSSPVTGGSILGDKT 106
Query: 578 YARNHQPCIIFMDEIDAIGGRR----------FSEGTSADREIQRTLMELLNQMDGFDSL 627
+ G +A ++ + Q + +
Sbjct: 107 RMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVAR 166
Query: 628 GQVKMIMATN 637
I
Sbjct: 167 MVDCFISLQI 176
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.8 bits (76), Expect = 0.058
Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 201 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRS 260
G+ + L+ G GTGKTL + F + + I
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDL 81
Query: 261 THHLEKTYFPFYSSAIVDKYIGESAR-----LIREMFNYARNHQPCIIFMDEIDAI 311
+++ ++ + LI + + ++ + +D + ++
Sbjct: 82 AKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137
Score = 30.0 bits (66), Expect = 0.86
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMF 576
G+ + L+ G GTGKTL + Q N + V E+ + I +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSI----QFLYNGIIEFDEPGVFVTFEETPQDIIKNA 74
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.4 bits (75), Expect = 0.060
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 1/118 (0%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
++ G PG G T ++ L + + + E A+ + + + +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS-FGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 588 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPA 645
I + GR+ +E T + L + +
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 121
Score = 31.5 bits (70), Expect = 0.25
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVV 237
++ G PG G T ++ L +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 33.0 bits (74), Expect = 0.064
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588
G G+GK+ LARA+A LD FL S ++ N+ R + +
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMAD 64
Query: 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 648
G +++ + + D ++ + RP D +
Sbjct: 65 FFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK 124
Query: 649 PGRLDRKIEIPLPNEQARLEI 669
+R ++A +
Sbjct: 125 KLYNERL---SKYEQKANFIL 142
Score = 31.4 bits (70), Expect = 0.22
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFL 234
G G+GK+ LARA+A LD FL
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFL 29
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.9 bits (74), Expect = 0.075
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 204 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHH 263
P+ + G PG GK+ + V+ + S + L++
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGY---VHVNRDTLGSWQRCVSSCQAALRQGKRVV 69
Query: 264 LEKTYF 269
++ T
Sbjct: 70 IDNTNP 75
Score = 32.5 bits (73), Expect = 0.096
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 523 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
P+ + G PG GK+ + V+ + + R + R
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGY---VHVNRDTLGSWQ----RCVSSCQAALRQG 65
Query: 583 QPCII 587
+ +I
Sbjct: 66 KRVVI 70
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 33.3 bits (75), Expect = 0.082
Identities = 22/147 (14%), Positives = 36/147 (24%), Gaps = 19/147 (12%)
Query: 518 RVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFN 577
RVGIT G PG GK+ A+ S L A K V+ VD + I
Sbjct: 53 RVGIT--------GVPGVGKSTTIDALGSLLTAAGHK-VAVLAVDPSSTRTGGSILGDKT 103
Query: 578 YARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME----------LLNQMDGFDSL 627
G + + Q + +
Sbjct: 104 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVAD 163
Query: 628 GQVKMIMATNRPDTLDPALLRPGRLDR 654
++ + ++ G +
Sbjct: 164 LTDFFLVLMLPGAGDELQGIKKGIFEL 190
Score = 31.8 bits (71), Expect = 0.30
Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 10/143 (6%)
Query: 175 GLSEQIRELREVIELPLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 234
++ +R++I+ L RVGIT G PG GK+ A+ S L A
Sbjct: 29 RRADHRAAVRDLIDAVLPQTGRAIRVGIT--------GVPGVGKSTTIDALGSLLTAAGH 80
Query: 235 KVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNY 294
KV S + R L F + +G A RE
Sbjct: 81 KVAVLAVDPSSTRTGGSILGDKTR--MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLL 138
Query: 295 ARNHQPCIIFMDEIDAIGGRRFS 317
+I ++ +
Sbjct: 139 CEAAGFDVILVETVGVGQSETAV 161
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.086
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 21/152 (13%)
Query: 524 PKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581
PKG L+ G PGTGKT +A +A++LD E+ +
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAELDGFQ-------------------HLEVGKLVKE 43
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641
+ + E+D E D + + +D S +
Sbjct: 44 NHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLH 103
Query: 642 LDPALLRPGRLDRKIEIPLPNEQARLEILKIH 673
+L R+ E EI I
Sbjct: 104 TSTEVLFERLTKRQYSEAKRAENMEAEIQCIC 135
Score = 32.7 bits (73), Expect = 0.099
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 205 PKGC--LLYGPPGTGKTLLARAVASQLDANF 233
PKG L+ G PGTGKT +A +A++LD
Sbjct: 3 PKGINILITGTPGTGKTSMAEMIAAELDGFQ 33
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.7 bits (73), Expect = 0.095
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
++ G PG GKT L + + +L + + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 269 F---PFYSSAIVDKYIGE--SARLIREMFNYARNHQPCIIFMDEIDA 310
F S V+ E + ++ + A+ + +I +DEI
Sbjct: 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
Score = 28.8 bits (63), Expect = 1.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 528 LLYGPPGTGKTLLARAVASQLD 549
++ G PG GKT L + + +L
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG 25
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.10
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFL 234
LL G PG GKT L + +AS+ ++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYI 33
Score = 32.2 bits (72), Expect = 0.10
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFL 553
LL G PG GKT L + +AS+ ++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYI 33
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 32.2 bits (72), Expect = 0.12
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583
+ GP GTGK+ L + + ++ +F VSS GE +
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS 60
Score = 30.7 bits (68), Expect = 0.42
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVS 238
+ GP GTGK+ L + + ++ +F VS
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.3 bits (72), Expect = 0.13
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
++ G P GKT +++ + L+ +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPT 33
Score = 32.3 bits (72), Expect = 0.13
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKV 555
++ G P GKT +++ + L+ +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 32.0 bits (71), Expect = 0.19
Identities = 15/73 (20%), Positives = 25/73 (34%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
L YGPPGTGKT A+ +L L ++ ++RE
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 588 FMDEIDAIGGRRF 600
+++ +
Sbjct: 97 SKHDLENYPCPPY 109
Score = 30.8 bits (68), Expect = 0.48
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILM---------GNQLKRR 259
L YGPPGTGKT A+ +L L L + + ++ I + + +
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 260 STHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
S H LE P Y I+D+ +A + + F + +
Sbjct: 97 SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 148
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.9 bits (71), Expect = 0.20
Identities = 15/146 (10%), Positives = 33/146 (22%), Gaps = 5/146 (3%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
++ G PG GK+ + V LD + D + + +L
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 588 FMDEIDAIGGRRFSEGTSADREIQ-----RTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642
E + + + G S ++ +
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 643 DPALLRPGRLDRKIEIPLPNEQARLE 668
DP ++ + +
Sbjct: 125 DPKIILSRQKRDTTRNRNDYSDESVI 150
Score = 30.4 bits (67), Expect = 0.51
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVV 237
++ G PG GK+ + V LD +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 32.0 bits (71), Expect = 0.21
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 212 GPPGTGKTLLARAVASQLDANFL 234
GP G GK L +A+A L + L
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLL 32
Score = 32.0 bits (71), Expect = 0.21
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 531 GPPGTGKTLLARAVASQLDANFL 553
GP G GK L +A+A L + L
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLL 32
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 31.6 bits (70), Expect = 0.25
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 201 GITPPKGCLLYGPPGTGKTLLA----RAVASQLDANFLKVVSSLFVTSKEDMAILMGNQL 256
G+ L+G TGK+ L LD + T + + +
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 89
Query: 257 KRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
+R + Y+ A + +M + + +I +D + A+
Sbjct: 90 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSE---SRFSLIVVDSVMAL 141
Score = 29.3 bits (64), Expect = 1.4
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 520 GITPPKGCLLYGPPGTGKTLLA 541
G+ L+G TGK+ L
Sbjct: 30 GVETGSITELFGEFRTGKSQLC 51
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 31.6 bits (70), Expect = 0.26
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 520 GITPPKGCLLYGPPGTGKTLLA--RAVASQLDANFLKVVSSAIVDKYIGESARLI 572
G+ G G+GKT + V Q + + A I
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYI 84
Score = 30.4 bits (67), Expect = 0.66
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 10/141 (7%)
Query: 201 GITPPKGCLLYGPPGTGKTLLA--RAVASQLDANFLKVVSSLFVTSKEDMAILM------ 252
G+ G G+GKT + V Q ++ +
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 89
Query: 253 --GNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDA 310
++ + + H ++ + Y + L E I +
Sbjct: 90 FRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 149
Query: 311 IGGRRFSEGTSADREIQRTLM 331
R ++ +
Sbjct: 150 TSTFRNEYTGRGKLAERQQKL 170
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 31.3 bits (70), Expect = 0.28
Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 33/215 (15%)
Query: 517 QRVGITPPKGCL--LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY-IGESARLIR 573
+R + +G L G +GK+ LA + QL + D G + L
Sbjct: 15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGF 74
Query: 574 EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMI 633
+ N + + S R+ + T +L + G +
Sbjct: 75 SEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVE 134
Query: 634 MATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIGDAATKWVLP 693
+ + P ++ + K G I + I P
Sbjct: 135 VYVDVP------------VEVAEQRDPKGLYK-----KAREGVIKEFTGISAPYEAPANP 177
Query: 694 FTAGGFIYIATVSVIPELLEDTSPKQTVKEILALL 728
+++ + + VK+I+ L
Sbjct: 178 -----EVHVKN--------YELPVQDAVKQIIDYL 199
Score = 31.3 bits (70), Expect = 0.31
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 15/141 (10%)
Query: 198 QRVGITPPKGCL--LYGPPGTGKTLLARAVASQLDANFLKVVSSLF-------VTSKEDM 248
+R + +G L G +GK+ LA + QL + L +
Sbjct: 15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGF 74
Query: 249 AILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESAR-LIREMFNYARNHQPCI----- 302
+ N+ RR + + R R++ A +
Sbjct: 75 SEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVE 134
Query: 303 IFMDEIDAIGGRRFSEGTSAD 323
+++D + +R +G
Sbjct: 135 VYVDVPVEVAEQRDPKGLYKK 155
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.1 bits (69), Expect = 0.29
Identities = 17/159 (10%), Positives = 44/159 (27%)
Query: 522 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARN 581
+ P + G PG+GK + L ++ G +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63
Query: 582 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDT 641
P I+ + + + D + + + D + ++ +
Sbjct: 64 IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123
Query: 642 LDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKH 680
+ LL+ G + + + + + R + + H
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162
Score = 28.4 bits (62), Expect = 2.6
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 203 TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 236
+ P + G PG+GK + L
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 31.5 bits (70), Expect = 0.31
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 212 GPPGTGKTLLARAVASQLDANFL 234
GP +GK+ +A+ +A +L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
Score = 31.5 bits (70), Expect = 0.31
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 531 GPPGTGKTLLARAVASQLDANFL 553
GP +GK+ +A+ +A +L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 30.7 bits (68), Expect = 0.49
Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVS--------------SLFVTSKEDMAILMGNQ 255
L GP G GK+ L + + + + F VS + ++E M +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAG 64
Query: 256 LKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIRE----MFNYARNHQPCIIFMD----- 306
Y + + + L + + P IF+
Sbjct: 65 DFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLD 124
Query: 307 ---EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341
+ + E + RT ME + FD
Sbjct: 125 VLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFD 162
Score = 30.3 bits (67), Expect = 0.61
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVS 557
L GP G GK+ L + + + + F VS
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVS 33
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 30.2 bits (67), Expect = 0.52
Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 4/145 (2%)
Query: 531 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 590
G G G+ + + ++ F + E ++ + I +
Sbjct: 10 GAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMM--QDISNN 67
Query: 591 EI-DAIGGRRFSEGTSADREIQRTLMELLNQMD-GFDSLGQVKMIMATNRPDTLDPALLR 648
E + GT + + L+ +D +L ++ + +
Sbjct: 68 EYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTIT 127
Query: 649 PGRLDRKIEIPLPNEQARLEILKIH 673
PG + + L E L+ H
Sbjct: 128 PGLNEDESLQRLQKESDILQRTYAH 152
Score = 30.2 bits (67), Expect = 0.60
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVS 238
G G G+ + + ++ F +
Sbjct: 10 GAHGVGRRHIKNTLITKHPDRFAYPIP 36
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.8 bits (68), Expect = 0.52
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579
G + ++ G GK+ R A Q K V A++++ + E+A + + N
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV 90
Query: 580 RNHQPCIIFMDEID 593
R Q + + I+
Sbjct: 91 RLRQSDSLKREIIE 104
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 30/163 (18%)
Query: 183 LREVIELPLLNPELFQRV------------GITPPKGCLLYGPPGTGKTLLARAVASQLD 230
+RE I L + E + G + ++ G GK+ R A Q
Sbjct: 1 MRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60
Query: 231 ANFLKVV------------------SSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272
K V V ++ ++ + ++ +
Sbjct: 61 TAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDT 120
Query: 273 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRR 315
E+ RL+ ++ +I +D I +
Sbjct: 121 FHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS 163
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 30.3 bits (67), Expect = 0.62
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLK----VVSSAIVDKYIGESARLIREMFNYARNHQ 583
+L GPPG GK A + + A L + S +G A+ I + +
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 584 PCIIFMDEI 592
+ DE+
Sbjct: 66 MVNMIKDEL 74
Score = 29.1 bits (64), Expect = 1.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
+L GPPG GK A + + A L
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 30.2 bits (67), Expect = 0.63
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFN--YARNHQPC 585
+YG GTGKT L +A ++ +V+ S+ D L + N
Sbjct: 40 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVD 99
Query: 586 IIFMDEIDAIGGRRFSE 602
++ +D++ + G+ ++
Sbjct: 100 LLLLDDVQFLSGKERTQ 116
Score = 26.7 bits (58), Expect = 9.4
Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 20/167 (11%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
+YG GTGKT L +A ++ +V+ S + M + + +
Sbjct: 40 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVD 99
Query: 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328
V G+ I + + + ++DR Q+
Sbjct: 100 LLLLD--DVQFLSGKERTQIEFFHIFNTLYLLEKQII--------------LASDRHPQK 143
Query: 329 TLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIP 375
D S + +++ + +++ + +E+
Sbjct: 144 LDG----VSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELR 186
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.2 bits (67), Expect = 0.66
Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 24/157 (15%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSS----------------LFVTSKEDMAILM 252
++ P G GK+ L +A+ +V S FV E ++
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 65
Query: 253 GNQLKRRSTHHLEKTYFPFYSSAIVDKY--------IGESARLIREMFNYARNHQPCIIF 304
+ + + V + A+ IR+ +AR+
Sbjct: 66 RDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPS 125
Query: 305 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 341
E+D R + + + ++ +D
Sbjct: 126 KIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYD 162
Score = 27.9 bits (61), Expect = 3.9
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAI 560
++ P G GK+ L +A+ +V S
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT 38
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 30.2 bits (67), Expect = 0.66
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 180 IRELREVIELPLLNPEL----FQRVGITP---PKGCLLYGPPGTGKTLLARAVASQLDAN 232
+ + I P + E+ +Q + K + P G+GKT +A A ++L
Sbjct: 53 VDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTP 112
Query: 233 FLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMF 292
L VV + + Q K R E+ F K + S +
Sbjct: 113 TLIVV----------PTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVN 162
Query: 293 NYARNHQPCIIFMDEIDAIGGRRFSE 318
++ ++ DE+ + + +
Sbjct: 163 AEKLGNRFMLLIFDEVHHLPAESYVQ 188
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 29.9 bits (66), Expect = 0.75
Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 8/136 (5%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMA--------ILMGNQLKRRS 260
+L G P GK A+ + + + L K + G +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 261 THHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGT 320
L K G + + + ++
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKD 123
Query: 321 SADREIQRTLMELLNQ 336
+ +++ L+E
Sbjct: 124 DQEETVRKRLVEYHQM 139
Score = 28.4 bits (62), Expect = 2.6
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKV 555
+L G P GK A+ + + +
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQIST 31
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.0 bits (66), Expect = 0.77
Identities = 14/143 (9%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 176 LSEQIRELREVIELPLLNPELFQRVGITPPKGC--LLYGPPGTGKTLLARAVASQLDANF 233
E +++ + + + L + +G ++G G+GKT LA +A +
Sbjct: 5 ADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
Query: 234 LKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFYSSAIVDKYIGESARLIREMFN 293
+ + V + +++ + + + + L+ +
Sbjct: 65 EEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAE 124
Query: 294 Y------ARNHQPCIIFMDEIDA 310
+ ++ +D + +
Sbjct: 125 DKIKELLNTDRPVKLLIVDSLTS 147
Score = 29.7 bits (65), Expect = 1.2
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 520 GITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYA 579
GI ++G G+GKT LA +A + + + V E+ + A
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91
Query: 580 RNH 582
+N
Sbjct: 92 QNR 94
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 0.98
Identities = 8/72 (11%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
+ G PG GK + +F+ + + ++ G + E+ +
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDY--SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 69
Query: 588 FMDEIDAIGGRR 599
+ +
Sbjct: 70 QEITLALLRNAI 81
Score = 28.0 bits (61), Expect = 3.0
Identities = 9/64 (14%), Positives = 13/64 (20%), Gaps = 1/64 (1%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
+ G PG GK + L L + G +K
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQY-GELIKNCIKEGQIVPQ 70
Query: 269 FPFY 272
Sbjct: 71 EITL 74
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 20/205 (9%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
++ G PG GKT +A +L + + + G + R H +
Sbjct: 40 IISGMPGIGKTTSVHCLAHELLGRSYA-----DGVLELNASDDRGIDVVRNQIKHFAQKK 94
Query: 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 328
+ E+ + R RF+ + +I
Sbjct: 95 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS--------TRFAFACNQSNKIIE 146
Query: 329 TLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLAHTWP 388
L + + L ++ + L+ L+ I + R A
Sbjct: 147 PLQS-QCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD--MRQA---- 199
Query: 389 ISIHAGPIAKHGEIDYEAVVKLSDS 413
I+ +A HG ++ + V K+ DS
Sbjct: 200 INNLQSTVAGHGLVNADNVFKIVDS 224
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 12 KTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQ 71
+ Q + + VE ++ E ++ L+EL++ D D + +S G L+ E
Sbjct: 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAAD----DAEVYKSSGNI-LIRVAKDEL 66
Query: 72 LKELTKQYDKSENDLKALQS 91
+EL ++ + + K ++
Sbjct: 67 TEELQEKLETLQLREKTIER 86
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 29.2 bits (65), Expect = 1.1
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 1 MTTPVVDEVRHKTLQDYRKKLTEHAEVEGR--LREMREQLKELTKQYDKSENDLKALQSV 58
+ P + + K++ E ++ R RE+ +++KE K+ E+D K L+
Sbjct: 99 LVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLE-- 156
Query: 59 GQHDLLLHCVREQLKELTKQYDK 81
++++LT ++ +
Sbjct: 157 -----------NEIQKLTDEFIE 168
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.9 bits (67), Expect = 1.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 193 NPELFQRV------GITPPKGCL-LYGPPGTGKTLLARAVASQL 229
+P+ V + + L+GP TGKT +A A+A +
Sbjct: 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
Score = 29.9 bits (67), Expect = 1.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 512 NPELFQRV------GITPPKGCL-LYGPPGTGKTLLARAVASQL 548
+P+ V + + L+GP TGKT +A A+A +
Sbjct: 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 29.9 bits (66), Expect = 1.1
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 192 LNPELFQRVGITPPKG-CLLYGPPGTGKT-LLARAVASQLDANFLKVVSSLFVT 243
LN E Q+ + +G L+ G+GKT +L +A + + + L +T
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63
Score = 29.1 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 511 LNPELFQRVGITPPKG-CLLYGPPGTGKT--LLARAV 544
LN E Q+ + +G L+ G+GKT L R
Sbjct: 12 LNKE--QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIA 46
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.1 bits (64), Expect = 1.3
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583
K + G PG+GK + + + + + ++ + + + + Q
Sbjct: 8 SKIIFVVGGPGSGKGTQCEKIVQKY--GYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 65
Query: 584 PC 585
Sbjct: 66 LV 67
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
[TaxId: 844]}
Length = 328
Score = 29.3 bits (65), Expect = 1.5
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 619 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAG 675
++ F S K+ +RP L + +I E R++IL H
Sbjct: 168 TAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPD 224
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.1 bits (64), Expect = 1.5
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 205 PKGC--LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVT--------SKEDMAILMGN 254
PKG +L GPPG GK A +A L L K + G
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 60
Query: 255 QLKRRSTHHLEKTY--FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309
+ L + P + + + R + + + + + E
Sbjct: 61 LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFS 117
Score = 28.8 bits (63), Expect = 1.9
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 524 PKGC--LLYGPPGTGKTLLARAVASQLDANFLKV 555
PKG +L GPPG GK A +A L
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 29.1 bits (64), Expect = 1.5
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLK---VVSSAIVDKYIGESARLIREMFNYAR--NH 582
L GPPG GKT A A+A +L + + +A ++ I ++E
Sbjct: 49 LFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGA 108
Query: 583 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTL 642
IIF+DE DA+ + +L+ + ++ A R L
Sbjct: 109 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 168
Query: 643 DPALLRPGRLDRKIEIPLP-NEQARLEILKIHAG 675
+ L E+ IL I G
Sbjct: 169 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 202
Score = 27.2 bits (59), Expect = 6.7
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV----VSSLFVTSKEDMAILMGNQLKRRSTHHL 264
L GPPG GKT A A+A +L + +++ + + + +
Sbjct: 49 LFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGA 108
Query: 265 EKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
D ++ + +R ++ I+ + I
Sbjct: 109 SFKIIFLDE---ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.8 bits (63), Expect = 1.7
Identities = 9/111 (8%), Positives = 26/111 (23%), Gaps = 2/111 (1%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQ 583
P + G PG GK + + + + + ++ E+
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKY--GYTHLSAGELLRDERKNPDSQYGELIEKYIKEG 58
Query: 584 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIM 634
+ I + + ++ + + D +
Sbjct: 59 KIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGK 109
Score = 27.2 bits (59), Expect = 6.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLD 230
P + G PG GK + +
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYG 26
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 2.0
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588
+GP G GKT L + +++ L +++ Y G ++ +
Sbjct: 32 FHGPNGIGKTTLLKTISTYLKPLKGEII-------YNGVPITKVKGKIFFLPEEIIVPRK 84
Query: 589 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD-----GFDSLGQVKMIM 634
+ D + G ++ +E + +D G S G ++ +
Sbjct: 85 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQ 135
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.8 bits (63), Expect = 2.1
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 519 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIV----DKYIGESARLIRE 574
+G++ G +GK+ + + L N + +V D + +
Sbjct: 5 IGVS--------GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKA 56
Query: 575 MFNYARNHQPCIIFMD 590
+ + D
Sbjct: 57 KALKGQFNFDHPDAFD 72
Score = 27.6 bits (60), Expect = 4.6
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 200 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 235
+G++ G +GK+ + + L N +
Sbjct: 5 IGVS--------GGTASGKSSVCAKIVQLLGQNEVD 32
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.3 bits (62), Expect = 2.2
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
LL GPPG GK A +A +L ++ + + + I E +L E Y
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL--GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 588 FM 589
+
Sbjct: 62 DL 63
Score = 27.2 bits (59), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
LL GPPG GK A +A +L +
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 28.4 bits (63), Expect = 2.2
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 1 MTTPVVDEVRHKTLQDYRKKLTEHAEVEGR--LREMREQLKELTKQYDKSENDLKALQSV 58
+ P + E R K L + E A V R R+ +++K L K + SE+D + Q
Sbjct: 100 VPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQ-- 157
Query: 59 GQHDLLLHCVREQLKELTKQYDK 81
+ +++LT K
Sbjct: 158 -----------DDVQKLTDAAIK 169
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 28.8 bits (63), Expect = 2.5
Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 435 REYVTQEDFMKAVRKVSDNKKLDHCNSYRTE-----------AGLFAIRSEREYVTQEDF 483
R + ++ ++ V +++ + + N E + ++ +
Sbjct: 231 RSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEG 290
Query: 484 MKAVRKVSDNKKLESKLDYKPVIEL 508
++ + SDN ++ KL + P + L
Sbjct: 291 VR--GRNSDNNLIKEKLGWAPNMRL 313
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.8 bits (64), Expect = 2.6
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 212 GPPGTGKTLLARAVASQLDANFLKVV 237
G G G + + +K V
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAV 36
Score = 28.8 bits (64), Expect = 2.6
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 531 GPPGTGKTLLARAVASQLDANFLKVV 556
G G G + + +K V
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAV 36
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.3 bits (62), Expect = 2.6
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 6/65 (9%)
Query: 531 GPPGTGKTLLARAVASQLDANFLKVV------SSAIVDKYIGESARLIREMFNYARNHQP 584
G +GKT L + +V + G + A +
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEG 67
Query: 585 CIIFM 589
+
Sbjct: 68 DGLLQ 72
Score = 27.5 bits (60), Expect = 4.3
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 212 GPPGTGKTLLARAVASQLDANFLKVV 237
G +GKT L + +V
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVG 33
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 28.3 bits (62), Expect = 2.6
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCII 587
+ G PG+GK ++ + + S ++ + + + +
Sbjct: 10 AIMGAPGSGKGTVSSRITKHF--ELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Query: 588 FM 589
+
Sbjct: 68 DV 69
Score = 28.3 bits (62), Expect = 2.7
Identities = 12/118 (10%), Positives = 27/118 (22%), Gaps = 2/118 (1%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLF--VTSKEDMAILMGNQLKRRSTHHLEK 266
+ G PG+GK ++ + + L L + ++ +L + + +
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV 69
Query: 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADR 324
A I+ + DR
Sbjct: 70 MTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR 127
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.3 bits (62), Expect = 2.8
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
++ G P +GK + ++ +
Sbjct: 7 MISGAPASGKGTQCELIKTKYQLAHISA 34
Score = 28.3 bits (62), Expect = 2.8
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKV 555
++ G P +GK + ++ +
Sbjct: 7 MISGAPASGKGTQCELIKTKYQLAHISA 34
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 2.9
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 562
GP G+GK+ + + + L + S
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 65
Score = 27.5 bits (60), Expect = 5.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 210 LYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSK 245
GP G+GK+ + + + L + S + +
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 28.6 bits (63), Expect = 2.9
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 12 KTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQ 71
L+ Y K + E E+E +QL+ L+K+Y +N + + +
Sbjct: 23 DILEKYIKFVKERTEIE---LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNE 79
Query: 72 LKELTKQYDKSENDLK 87
+ + Q++ ++
Sbjct: 80 MNDYAGQHEVISENMA 95
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.8 bits (60), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 209 LLYGPPGTGKTLLARAVASQL 229
L G PG+GK+ AR ++
Sbjct: 6 LTIGCPGSGKSTWAREFIAKN 26
Score = 27.8 bits (60), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 528 LLYGPPGTGKTLLARAVASQL 548
L G PG+GK+ AR ++
Sbjct: 6 LTIGCPGSGKSTWAREFIAKN 26
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.4 bits (63), Expect = 3.2
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 527 CLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAR 580
L+ PP GKT+L + +A + N V ++ I E + EM +
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL---IDERPEEVTEMQRLVK 96
Score = 26.9 bits (59), Expect = 8.4
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 208 CLLYGPPGTGKTLLARAVASQLDANFLK-VVSSLFVTSKEDMAILMGNQLKRRSTHHLEK 266
L+ PP GKT+L + +A + N V+ L + + + M +K E
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG------EV 99
Query: 267 TYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
F A + E + + + II +D I +
Sbjct: 100 VASTFDEPASRHVQVAEMVIEKAKRL--VEHKKDVIILLDSITRL 142
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 28.2 bits (62), Expect = 3.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 362 LLRPGRLDRKIEIPLPNEQARLAHTW 387
++P R+D +++P + +L H+W
Sbjct: 1 FVKPARIDILLDMPPASRDLQLKHSW 26
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 28.0 bits (62), Expect = 3.3
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Query: 22 TEHAEVEGRLREMREQLKELTKQYDKSENDLKAL-QSVGQHDLLLHCVREQLKELTKQYD 80
TE + +L +M +QL++L Q + +N +++ ++ DLL L +
Sbjct: 1 TELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNLPDNWK 60
Query: 81 KSENDLKALQSVGQVSLSTSVSKCWTVIVKATNGPRYVVGCRRQLDKAKLKSG 133
+ +D S S+++ + + + T ++ +K
Sbjct: 61 EVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRV 113
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 28.1 bits (61), Expect = 3.3
Identities = 18/98 (18%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 505 VIELPLLNPEL--FQRVGI-------TPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV 555
++E + L +Q G G L G GKTL AV S
Sbjct: 3 LLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELT 62
Query: 556 VSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 593
S I + ++ F +I
Sbjct: 63 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIK 100
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 185 EVIELPLLNPEL--FQRVGI-------TPPKGCLLYGPPGTGKTLLARAVASQL 229
+++E + L +Q G G L G GKTL AV S
Sbjct: 2 QLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA 55
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 27.8 bits (62), Expect = 3.4
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 5 VVDEVRHKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKAL 55
V E R+ + + + M +QY S N++ +
Sbjct: 115 VNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQI 165
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.0 bits (61), Expect = 3.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKV 236
+L G PG GK A + + +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHIST 31
Score = 28.0 bits (61), Expect = 3.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKV 555
+L G PG GK A + + +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 26.3 bits (58), Expect = 3.5
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 30 RLREMREQLKELTKQYDKSENDLKALQSVGQHDLL------LHCVREQLKELTKQ-YDKS 82
++ +EQL + + ++ D K ++ ++ + + EQL +L Q D+
Sbjct: 10 KIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 69
Query: 83 EN 84
EN
Sbjct: 70 EN 71
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 3.6
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 13/136 (9%)
Query: 524 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVV----SSAIVDKYIGESARLIR------ 573
P+ L+ G GTGK++L R +A ++V + ++ K+ + ++
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRT 109
Query: 574 ---EMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQV 630
FN RN + + G +E ++ + + G S+ ++
Sbjct: 110 KGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMREL 169
Query: 631 KMIMATNRPDTLDPAL 646
D L L
Sbjct: 170 FHWTTIATFDDLRGFL 185
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.0 bits (62), Expect = 3.6
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 529 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQPCIIF 588
L GP G GKT R +A + + ++ + + + + + A Q ++
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 589 ----MDEIDAIGGRRFSEGTSADREIQRTLMELLN 619
+ + A + + R + ELL
Sbjct: 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 27.9 bits (62), Expect = 3.6
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
+ + GR+ ++R++++ YD+
Sbjct: 147 DTDAIAGRVAQIRQEIENSDSDYDR 171
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E AE+E R+ ++R+Q++E T YD+
Sbjct: 148 EKAEIEARVSQIRQQIEETTSDYDR 172
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 4.0
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 26/224 (11%)
Query: 509 PLLNPELFQRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV------VSSAIVD 562
P + P+ P +L G GTGK A +A KV V
Sbjct: 4 PKVIPD-------KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAAL 56
Query: 563 KYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 622
+ + + + I + + E D + E ++
Sbjct: 57 EQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLE 116
Query: 623 GFDSLGQVKMIMATNRPDTLDPAL-LRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHG 681
++K I +PD + + G+ + I+ AK G
Sbjct: 117 ------EMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG 170
Query: 682 EIGDAATKWVLPFTAGGFIYIATVSVIPELLEDTSPKQTVKEIL 725
A +I T I E LE +P++ V +
Sbjct: 171 GALSAVAATGAT-----IKFIGTGEKIDE-LEVFNPRRFVARLH 208
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 27.9 bits (61), Expect = 4.3
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 2/104 (1%)
Query: 213 PPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPFY 272
P L R LDA+ + V L K D+ + T
Sbjct: 30 PMHRAHEELCRMAMESLDADGVVVHMLLGKLKKGDIPAP--VRDAAIRTMAEVYFPPNTV 87
Query: 273 SSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316
+ + + Y R + F+ D G +
Sbjct: 88 MVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDY 131
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Length = 220
Score = 27.5 bits (61), Expect = 4.4
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 14 LQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDL 52
LQ YR ++ E +M E LK L + ++
Sbjct: 6 LQKYRAQVFEWGG---CFDKMFEALKSLIYLSEFENSEF 41
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 27.6 bits (61), Expect = 4.4
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 1 MTTPVVDEVRHKTLQDYRKKLTEHAEVEGR--LREMREQLKELTKQYDKSENDLKALQSV 58
+ P + E R K L + E V R R+ LK L K + SE++ + Q
Sbjct: 100 VPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQ-- 157
Query: 59 GQHDLLLHCVREQLKELTKQYDK 81
E++++LT K
Sbjct: 158 -----------EEIQKLTDVAVK 169
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
562]}
Length = 193
Score = 27.4 bits (61), Expect = 4.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 23 EHAEVEGRLREMREQLKELTKQYDK 47
E A ++GR+ ++R+Q++E T YD+
Sbjct: 155 EEAAIQGRVAQIRQQIEEATSDYDR 179
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 212 GPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTYFPF 271
GP GK+ + R + ++ + S+ T++ + +
Sbjct: 9 GPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 64
Query: 272 YSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316
+ G R + + E+D G R
Sbjct: 65 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAI 109
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 27.9 bits (61), Expect = 5.1
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHL 264
+ L G GTGKT+ V L L + + +A + + + +
Sbjct: 28 ERFVTLLGATGTGKTVTMAKVIEALGRPA------LVLAPNKILAAQLAAEFRELFPENA 81
Query: 265 EKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFM 305
+ + +Y + Y+ I + + +
Sbjct: 82 VEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHST 122
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 5.2
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 12/102 (11%)
Query: 205 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHL 264
+ L+ G G GKT + KV +F + +
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV---MFCA-----GDTFRAAGGTQLSEWG 57
Query: 265 EKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMD 306
++ P + A L + + ++F+D
Sbjct: 58 KRLSIPVIQG----PEGTDPAALAYDAVQAMKARGYDLLFVD 95
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.5 bits (60), Expect = 5.2
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 15/110 (13%)
Query: 208 CLLYGPPGTGKTLLARAVASQ----LDANFLKV--VSSLFVTSKEDMAILMGNQLKRRST 261
L+G G+GK+++A S+ + N+ + + K + L +S
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106
Query: 262 HHLEKTYFPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAI 311
L S L R + N + + D++
Sbjct: 107 DDLLN---------FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE 147
Score = 27.1 bits (59), Expect = 8.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 527 CLLYGPPGTGKTLLARAVASQ 547
L+G G+GK+++A S+
Sbjct: 47 LFLHGRAGSGKSVIASQALSK 67
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 27.2 bits (60), Expect = 5.2
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 11 HKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVRE 70
+ E++ ++ +E + + +T++ ++ + Q + L V E
Sbjct: 66 LPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSE 125
Query: 71 QLKELTKQYDKSENDLKALQSVGQVSL 97
Q +E ++ + L G+
Sbjct: 126 QHEEE----KLFKSIIDKLSLAGKSGE 148
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 26.2 bits (58), Expect = 5.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 13/48 (27%)
Query: 29 GRLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELT 76
GRL + + L++L + E L D L++ QL+ L+
Sbjct: 1 GRLEGLTQDLRQLQES----EQQL---------DHLMNICTTQLRLLS 35
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.4 bits (61), Expect = 6.4
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 517 QRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMF 576
++G+ +G G GKT + +L N K V +GE R +++
Sbjct: 69 GKIGL--------FGGAGVGKT----VLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 116
Query: 577 N 577
+
Sbjct: 117 H 117
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.7 bits (58), Expect = 6.6
Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 8/101 (7%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
L+ P G+GK+ A + +V + V + M
Sbjct: 12 HLHAPTGSGKSTKVPAAY--AAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT 69
Query: 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEID 309
S Y A Y II DE
Sbjct: 70 ITTGSPITYSTYGKFLADGGCSGGAYD------IIICDECH 104
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 27.0 bits (58), Expect = 7.1
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 528 LLYGPPGTGKTLLARAVASQLDA-----NFLKVVSSAIVDKYIGESARLIREMFNYARNH 582
L YGPPGTGKT A+A ++ L++ +S + + +
Sbjct: 39 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSK 98
Query: 583 QPCIIFMDEI 592
+I +DE
Sbjct: 99 GFKLIILDEA 108
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.5 bits (60), Expect = 7.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 30 RLREMREQLKELTKQYDKSENDLKALQSVGQHDLLLHCVREQLKELTKQYDK 81
L + R Q +L KQ + E +L+ L + D+ LK Y +
Sbjct: 705 SLTKERYQ--KLLKQKQEKETELENLLKLSAKDI----WNTDLKAFEVGYQE 750
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 27.4 bits (60), Expect = 7.4
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 525 KGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARNHQP 584
K L G GTGKT V +Q++ L + + + +L E+ + H
Sbjct: 32 KHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKT------LAGQLYSELKEFF-PHNA 84
Query: 585 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQM 621
F+ D + T E + + ++++
Sbjct: 85 VEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKL 121
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.0 bits (59), Expect = 7.7
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 531 GPPGTGKTLLARAVASQLDANFLKVVSSAI-VDKYIGESARLIREMFNYARNHQPCI 586
G GK+ AR + + L I D ++ + L +
Sbjct: 87 GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESY 143
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 25.5 bits (56), Expect = 8.1
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 4 PVVDEVRHKTLQDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKA-LQSVGQHD 62
V+ + L+ R++L E +L+E E L+ T +S ++ L+ +
Sbjct: 14 LAAPGVQQQ-LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRR- 71
Query: 63 LLLHCVREQLKELTKQ 78
L + +QL+EL
Sbjct: 72 --LDLLHQQLQELHAH 85
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 8.3
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 209 LLYGPPGTGKTLLARAVASQLDANFLKVVSSLFVTSKEDMAILMGNQLKRRSTHHLEKTY 268
++ PG GKT R + + + + + +L + +A M L+ + +
Sbjct: 13 IMDLHPGAGKT--KRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY-QTPA 69
Query: 269 FPFYSSAIVDKYIGESARLIREMFNYARNHQPCIIFMDEIDAIGGRRF 316
+ + A + + R +I MDE
Sbjct: 70 IRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASI 117
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.6 bits (58), Expect = 9.0
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 528 LLYGPPGTGKTLLARAVASQLDANFLKVVSS-AIVDKYIGESARLIR-EMFNYARNHQPC 585
L G G GKT L R + + + +V++Y + +++ A +
Sbjct: 37 YLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELE 96
Query: 586 IIFMDEIDAIGGRRFSE 602
+ + + E
Sbjct: 97 FMGIRDYFNTDSICLIE 113
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 148
Score = 26.3 bits (58), Expect = 9.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 15 QDYRKKLTEHAEVEGRLREMREQLKELTKQYDKSENDLKAL 55
Q+ + E R+++ + QL+EL Q K L
Sbjct: 2 QECQNLEVERQRRLERIKQKQSQLQELILQQI----AFKNL 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,719,982
Number of extensions: 132725
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 261
Length of query: 741
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 649
Effective length of database: 1,144,436
Effective search space: 742738964
Effective search space used: 742738964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)