BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1126
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1
SV=1
Length = 377
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 22 NATAKIPATPEGMAVAYGSLVAMALLPIFFGAHRSVKYHKNQ 63
N+T + P+TPEG+A+AYGSL+ MALLPIFFGA RSV+ + +
Sbjct: 20 NSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGK 61
>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1
SV=1
Length = 378
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 22 NATAKIPATPEGMAVAYGSLVAMALLPIFFGAHRSVKYHKNQKQ 65
N T + P+TPEG+A+AYGSL+ MALLPIFFGA RSV+ + +
Sbjct: 20 NGTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKSS 63
>sp|P41574|6PGD_ESCVU 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Escherichia vulneris GN=gnd PE=3 SV=1
Length = 445
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP G AVAY A+LP +FGAH
Sbjct: 385 IADDYQQALRDVVAYAVQNG---IPVPTFGAAVAYYDSYRAAVLPANLIQAQRDYFGAH 440
>sp|O13024|INCEA_XENLA Inner centromere protein A OS=Xenopus laevis GN=incenp-a PE=1 SV=1
Length = 873
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 EVIKENVTEAVKNATAKIPATPEGMAVAYGSL 41
E+ K+NV+E V +A +P TPE + A G L
Sbjct: 182 EITKDNVSETVNSAVPAVPVTPENKSRAAGKL 213
>sp|P41581|6PGD_CITAM 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Citrobacter amalonaticus GN=gnd PE=3 SV=1
Length = 445
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V+ AV+N IP AVAY A+LP +FGAH
Sbjct: 385 IADDYQQALRDVVSYAVQNG---IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAH 440
>sp|P37756|6PGD_SHIFL 6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella
flexneri GN=gnd PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A+LP +FGAH
Sbjct: 396 IADDYQQALRDVVAYAVQNG---IPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAH 451
>sp|P41580|6PGD_SHISO 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Shigella sonnei GN=gnd PE=3 SV=1
Length = 445
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A+LP +FGAH
Sbjct: 385 IADDYQQALRDVVAYAVQNG---IPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAH 440
>sp|P00350|6PGD_ECOLI 6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia
coli (strain K12) GN=gnd PE=1 SV=2
Length = 468
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A+LP +FGAH
Sbjct: 396 IADDYQQALRDVVAYAVQNG---IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAH 451
>sp|P41578|6PGD_SHIBO 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Shigella boydii GN=gnd PE=3 SV=1
Length = 445
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A+LP +FGAH
Sbjct: 385 IADDYQQALRDVVAYAVQNG---IPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAH 440
>sp|P41576|6PGD_KLEPN 6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella
pneumoniae GN=gnd PE=3 SV=2
Length = 468
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAHR 55
IA+D+++ +++ V AV+N IP A+AY A+LP +FGAH
Sbjct: 396 IADDYQQALRDVVAYAVQNG---IPVPTVSAAIAYYDSYRSAVLPANLIQAQRDYFGAH- 451
Query: 56 SVKYHKNQKQ 65
Y + K+
Sbjct: 452 --TYKRTDKE 459
>sp|P41579|6PGD_SHIDY 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Shigella dysenteriae GN=gnd PE=3 SV=1
Length = 445
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A LP +FGAH
Sbjct: 385 IADDYQQALRDVVAYAVQNG---IPVPTFAAAVAYYDSYRAAFLPANLIQAQRDYFGAH 440
>sp|P41582|6PGD_CITDI 6-phosphogluconate dehydrogenase, decarboxylating (Fragment)
OS=Citrobacter diversus GN=gnd PE=3 SV=1
Length = 445
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 IAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI--------FFGAH 54
IA+D+++ +++ V AV+N IP AVAY A+LP +FGAH
Sbjct: 385 IADDYQQALRDVVAYAVQNG---IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAH 440
>sp|A7ENU3|CLU_SCLS1 Clustered mitochondria protein homolog OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=clu1 PE=3 SV=1
Length = 1311
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 21 KNATAKIPATPEGMAVAYGSLVAMALL----PIFFGAHRSVKYHKNQKQFKAVMMLYLSP 76
K++T K +P+ A+ + +ALL P F + + ++ + N K+ A + +
Sbjct: 256 KSSTGKFDPSPKSAPKAHSAHSLLALLGDLSPSFEDSFKRLQEYNNTKEPLATFQITNAT 315
Query: 77 PSNQWI 82
PSN WI
Sbjct: 316 PSNPWI 321
>sp|B0Z5H6|CCSA_OENPA Cytochrome c biogenesis protein ccsA OS=Oenothera parviflora
GN=ccsA PE=3 SV=1
Length = 319
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 35 AVAYGSLVAMALLPIFFGAHRSVKYHKN---QKQFKAVMMLYLSPPSNQWISTNF 86
A+ GSL+++ALL I F R + K + F V + Y + PSN +ST+F
Sbjct: 149 ALLCGSLLSVALLVITFRKARKIFSKKKAFLKDSFSFVEIQYRNEPSNVLLSTSF 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,049,812
Number of Sequences: 539616
Number of extensions: 939857
Number of successful extensions: 2956
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2949
Number of HSP's gapped (non-prelim): 20
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)