Query psy1126
Match_columns 93
No_of_seqs 41 out of 43
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 22:15:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2443|consensus 98.6 1.3E-08 2.7E-13 84.0 2.4 40 24-63 13-52 (362)
2 PHA00736 hypothetical protein 90.3 0.26 5.7E-06 33.7 2.4 31 21-52 30-60 (79)
3 COG4197 Uncharacterized protei 72.7 1.2 2.6E-05 31.6 0.1 21 64-84 14-35 (96)
4 CHL00031 psbT photosystem II p 64.2 8.4 0.00018 22.8 2.5 18 35-52 3-20 (33)
5 PRK11875 psbT photosystem II r 61.0 11 0.00024 22.0 2.6 18 35-52 3-20 (31)
6 PF01405 PsbT: Photosystem II 59.6 14 0.0003 21.3 2.7 18 35-52 3-20 (29)
7 PF02096 60KD_IMP: 60Kd inner 51.6 13 0.00028 26.5 2.2 21 40-60 72-92 (198)
8 TIGR01707 gspI general secreti 39.9 1.2E+02 0.0025 20.5 5.3 30 34-63 9-38 (101)
9 TIGR03592 yidC_oxa1_cterm memb 38.5 28 0.0006 25.1 2.2 21 39-59 70-90 (181)
10 PF03823 Neurokinin_B: Neuroki 38.4 22 0.00049 23.4 1.5 39 40-78 4-49 (59)
11 PF11119 DUF2633: Protein of u 37.7 36 0.00079 22.2 2.4 25 42-66 13-42 (59)
12 PLN02755 complex I subunit 32.6 27 0.00059 23.6 1.3 30 25-57 25-56 (71)
13 PF09835 DUF2062: Uncharacteri 31.8 51 0.0011 22.7 2.6 25 26-50 14-38 (154)
14 PRK00145 putative inner membra 31.2 41 0.00089 25.4 2.2 21 39-59 99-119 (223)
15 TIGR01711 gspJ general secreti 30.2 99 0.0021 22.6 4.0 30 34-63 10-39 (192)
16 PF11157 DUF2937: Protein of u 30.1 1.4E+02 0.003 22.0 4.8 21 25-45 127-147 (167)
17 PF01794 Ferric_reduct: Ferric 29.0 1.2E+02 0.0025 19.1 3.7 35 35-69 79-113 (125)
18 TIGR01710 typeII_sec_gspG gene 27.6 1.5E+02 0.0032 20.4 4.3 28 36-63 12-39 (134)
19 PRK02463 OxaA-like protein pre 26.7 43 0.00093 27.0 1.7 22 39-60 139-160 (307)
20 PF15061 DUF4538: Domain of un 25.5 75 0.0016 20.7 2.3 32 33-64 9-41 (58)
21 PF01998 DUF131: Protein of un 25.4 14 0.00031 24.0 -1.0 22 36-57 23-44 (64)
22 KOG3951|consensus 24.3 1.9E+02 0.004 24.4 5.0 49 25-73 66-138 (321)
23 PF12273 RCR: Chitin synthesis 23.8 65 0.0014 22.0 2.0 20 38-57 5-24 (130)
24 COG4811 Predicted membrane pro 23.8 87 0.0019 23.9 2.8 36 30-66 63-99 (152)
25 KOG4633|consensus 23.4 26 0.00057 27.0 -0.0 50 42-93 100-169 (169)
26 KOG3086|consensus 23.2 29 0.00063 28.8 0.1 34 45-82 150-183 (296)
27 PRK01622 OxaA-like protein pre 22.9 68 0.0015 24.8 2.1 21 39-59 138-158 (256)
28 PF06022 Cir_Bir_Yir: Plasmodi 22.7 69 0.0015 25.5 2.2 14 39-52 263-276 (280)
29 PRK00247 putative inner membra 22.6 67 0.0015 27.4 2.2 22 38-59 104-125 (429)
30 COG2456 Uncharacterized conser 22.3 59 0.0013 24.0 1.6 20 36-55 45-64 (121)
31 TIGR02230 ATPase_gene1 F0F1-AT 22.2 1.9E+02 0.0041 20.2 4.0 30 27-57 35-64 (100)
32 COG4662 TupA ABC-type tungstat 22.2 1E+02 0.0022 24.8 3.0 47 27-77 95-141 (227)
33 TIGR03061 pip_yhgE_Nterm YhgE/ 21.1 90 0.0019 21.6 2.2 14 40-53 15-28 (164)
34 PRK02654 putative inner membra 21.0 73 0.0016 27.3 2.1 46 39-84 98-157 (375)
35 PRK02944 OxaA-like protein pre 21.0 82 0.0018 24.4 2.2 20 39-58 131-150 (255)
36 PF09472 MtrF: Tetrahydrometha 20.8 1.4E+02 0.0031 19.5 3.0 25 27-51 38-62 (64)
37 PRK10586 putative oxidoreducta 20.6 1E+02 0.0022 24.7 2.8 21 26-46 265-288 (362)
38 PRK03449 putative inner membra 20.5 82 0.0018 25.4 2.2 21 39-59 100-120 (304)
39 TIGR03546 conserved hypothetic 20.3 1E+02 0.0022 22.7 2.5 25 26-50 11-35 (154)
40 PRK01315 putative inner membra 20.0 84 0.0018 25.7 2.2 20 39-58 110-129 (329)
No 1
>KOG2443|consensus
Probab=98.65 E-value=1.3e-08 Score=84.02 Aligned_cols=40 Identities=40% Similarity=0.493 Sum_probs=37.7
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 24 TAKIPATPEGMAVAYGSLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 24 ~~k~psTpEG~alAYgsLviMAllPIffGS~RSV~~~k~q 63 (93)
++..++++|+++.+|++|++||+++|++|||||++++|++
T Consensus 13 ~~~~~~~~~~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~ 52 (362)
T KOG2443|consen 13 AGTHWTTSELLASAYVSLILIALLLIVIGSFRSLNYIKEN 52 (362)
T ss_pred cCCcccchhhhcccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3578999999999999999999999999999999999887
No 2
>PHA00736 hypothetical protein
Probab=90.25 E-value=0.26 Score=33.74 Aligned_cols=31 Identities=39% Similarity=0.754 Sum_probs=27.5
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHHhh
Q psy1126 21 KNATAKIPATPEGMAVAYGSLVAMALLPIFFG 52 (93)
Q Consensus 21 n~t~~k~psTpEG~alAYgsLviMAllPIffG 52 (93)
-.-.+|+|+.-.|+|-+| .|++|-++|+|.|
T Consensus 30 ykmagkipaii~giastf-~lmfmdflplfwg 60 (79)
T PHA00736 30 YKMAGKIPAILVGIASTF-TLMFMDFLPLFWG 60 (79)
T ss_pred HHHhCCccHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344589999999999999 8999999999987
No 3
>COG4197 Uncharacterized protein conserved in bacteria, prophage-related [Function unknown]
Probab=72.71 E-value=1.2 Score=31.58 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=18.4
Q ss_pred hhhhhhhhhhcCCCC-Ccceec
Q psy1126 64 KQFKAVMMLYLSPPS-NQWIST 84 (93)
Q Consensus 64 k~~~~~~~~~~~~~~-~~~~~~ 84 (93)
-|||.+-.|-+|||+ |||++-
T Consensus 14 ~q~a~a~LLgvsp~~vnQw~~g 35 (96)
T COG4197 14 GQKALARLLGVSPPSVNQWIKG 35 (96)
T ss_pred cHHHHHHHHccCchHHHHHhhh
Confidence 788999999999997 999864
No 4
>CHL00031 psbT photosystem II protein T
Probab=64.21 E-value=8.4 Score=22.80 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1126 35 AVAYGSLVAMALLPIFFG 52 (93)
Q Consensus 35 alAYgsLviMAllPIffG 52 (93)
|++|..|+++++-=|||.
T Consensus 3 alvYtfll~~tlgilFFA 20 (33)
T CHL00031 3 ALVYTFLLVSTLGIIFFA 20 (33)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 689999999999999986
No 5
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=61.03 E-value=11 Score=22.02 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1126 35 AVAYGSLVAMALLPIFFG 52 (93)
Q Consensus 35 alAYgsLviMAllPIffG 52 (93)
|++|..|++.++.-|||.
T Consensus 3 al~Ytfll~~tlgiiFFA 20 (31)
T PRK11875 3 SFAYILILTLALVTLFFA 20 (31)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 689999999999999886
No 6
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=59.55 E-value=14 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1126 35 AVAYGSLVAMALLPIFFG 52 (93)
Q Consensus 35 alAYgsLviMAllPIffG 52 (93)
|++|..|++.++.=|||-
T Consensus 3 a~vY~~ll~~tlgilffA 20 (29)
T PF01405_consen 3 ALVYTFLLIGTLGILFFA 20 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 589999999999888874
No 7
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=51.64 E-value=13 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhcchhhhhh
Q psy1126 40 SLVAMALLPIFFGAHRSVKYH 60 (93)
Q Consensus 40 sLviMAllPIffGS~RSV~~~ 60 (93)
.+..++=+|||||-||+++..
T Consensus 72 ~~~~liq~Pif~~~~~~lr~~ 92 (198)
T PF02096_consen 72 CLPPLIQIPIFIGLFRALRRM 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777899999999999663
No 8
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=39.90 E-value=1.2e+02 Score=20.51 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 34 MAVAYGSLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 34 ~alAYgsLviMAllPIffGS~RSV~~~k~q 63 (93)
+|+|-.+++.++++|.+-.+.|+....+.+
T Consensus 9 vAlaI~ai~~~~~~~~~~~~~~~~~~l~~~ 38 (101)
T TIGR01707 9 VALAIFAAAALALISSVGGQTNAIGRLRDK 38 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888899999998888888776666
No 9
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=38.50 E-value=28 Score=25.13 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhcchhhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVKY 59 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~ 59 (93)
|.|....=+|||||-||+++.
T Consensus 70 ~~lp~liQ~Pif~~~~~~lr~ 90 (181)
T TIGR03592 70 GCLPLLIQMPIFIALYQVLRR 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555678999999999964
No 10
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=38.37 E-value=22 Score=23.36 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhh-------hhhhhhhhcCCCC
Q psy1126 40 SLVAMALLPIFFGAHRSVKYHKNQKQ-------FKAVMMLYLSPPS 78 (93)
Q Consensus 40 sLviMAllPIffGS~RSV~~~k~qk~-------~~~~~~~~~~~~~ 78 (93)
.|++.|++-+-.|.-.--.|...|+| -|...-||--|||
T Consensus 4 ~lLf~aiLalsla~s~gavCeesQeQ~~p~gg~skKdsdLyqLPps 49 (59)
T PF03823_consen 4 TLLFAAILALSLARSFGAVCEESQEQVVPGGGHSKKDSDLYQLPPS 49 (59)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCccccCcchhhCCHH
Confidence 57778888777664444448777755 4667778888886
No 11
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=37.73 E-value=36 Score=22.22 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=16.9
Q ss_pred HHHHHHHHHhh-----cchhhhhhhhhhhh
Q psy1126 42 VAMALLPIFFG-----AHRSVKYHKNQKQF 66 (93)
Q Consensus 42 viMAllPIffG-----S~RSV~~~k~qk~~ 66 (93)
|++.-.=|||| ++-|..+|..|||-
T Consensus 13 VLLISfiIlfgRl~Y~~I~a~~hHq~k~~a 42 (59)
T PF11119_consen 13 VLLISFIILFGRLIYSAIGAWVHHQDKKQA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 33344446677 78888999988653
No 12
>PLN02755 complex I subunit
Probab=32.61 E-value=27 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=20.6
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhh--cchhh
Q psy1126 25 AKIPATPEGMAVAYGSLVAMALLPIFFG--AHRSV 57 (93)
Q Consensus 25 ~k~psTpEG~alAYgsLviMAllPIffG--S~RSV 57 (93)
.-+--||-..++ +++.|+++|+.+| -.|-.
T Consensus 25 kyFRWT~Rt~~i---~~ifgv~VP~liy~giv~eF 56 (71)
T PLN02755 25 FNFRWTRRNLAV---VGIFGIAVPILVYKGIVREF 56 (71)
T ss_pred Hheecccchhhh---hhhhhhhhhHHhhhhhhhhh
Confidence 456778877554 6689999998764 44444
No 13
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=31.79 E-value=51 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH
Q psy1126 26 KIPATPEGMAVAYGSLVAMALLPIF 50 (93)
Q Consensus 26 k~psTpEG~alAYgsLviMAllPIf 50 (93)
+...||+-+|.+...=++++++|++
T Consensus 14 ~~~~~p~~iA~g~AiG~fig~~P~~ 38 (154)
T PF09835_consen 14 RWGGSPHSIALGFAIGVFIGFLPIF 38 (154)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999888889999983
No 14
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=31.22 E-value=41 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhcchhhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVKY 59 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~ 59 (93)
|.|..+.=+|||||-||+++-
T Consensus 99 ~~lp~liQiPif~~l~~~i~~ 119 (223)
T PRK00145 99 GCLPLLIQWPILIALYYVFNN 119 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666779999999998854
No 15
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=30.21 E-value=99 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 34 MAVAYGSLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 34 ~alAYgsLviMAllPIffGS~RSV~~~k~q 63 (93)
+|+|-++++..+..+.|-+..|+-.....+
T Consensus 10 val~I~ail~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T TIGR01711 10 VAIAIFASLSLGAYQVLDSVMQSDEATRVQ 39 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999988888665543
No 16
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=30.07 E-value=1.4e+02 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=13.4
Q ss_pred cCCCCCchhHHHHHHHHHHHH
Q psy1126 25 AKIPATPEGMAVAYGSLVAMA 45 (93)
Q Consensus 25 ~k~psTpEG~alAYgsLviMA 45 (93)
.-+|-||||++.+=+..++.+
T Consensus 127 p~vplt~~gi~~g~vg~l~~~ 147 (167)
T PF11157_consen 127 PAVPLTPEGIVFGLVGALLGA 147 (167)
T ss_pred CcCcCCHHHHHHHHHHHHHHH
Confidence 568999999655544433333
No 17
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=28.95 E-value=1.2e+02 Score=19.07 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhh
Q psy1126 35 AVAYGSLVAMALLPIFFGAHRSVKYHKNQKQFKAV 69 (93)
Q Consensus 35 alAYgsLviMAllPIffGS~RSV~~~k~qk~~~~~ 69 (93)
....|...+.+++++++.|++.++.++.-+.|+.+
T Consensus 79 ~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~ 113 (125)
T PF01794_consen 79 YNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYL 113 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34466666667788888998888655555666654
No 18
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=27.59 E-value=1.5e+02 Score=20.36 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 36 VAYGSLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 36 lAYgsLviMAllPIffGS~RSV~~~k~q 63 (93)
++-.++++.+.+|-+++..+.-+....+
T Consensus 12 laIigil~~i~~p~~~~~~~~a~~~~~~ 39 (134)
T TIGR01710 12 LVILGLLAALVAPKLFSQADKAKAQVAK 39 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666778888876655444444
No 19
>PRK02463 OxaA-like protein precursor; Provisional
Probab=26.68 E-value=43 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhcchhhhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVKYH 60 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~~ 60 (93)
|+|-++.=+|||||=||++...
T Consensus 139 GCLP~LIQ~PIf~aly~ai~~~ 160 (307)
T PRK02463 139 GCLPLLIQMPFFSALYFAAQYT 160 (307)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 6788888899999999998643
No 20
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=25.48 E-value=75 Score=20.67 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhc-chhhhhhhhhh
Q psy1126 33 GMAVAYGSLVAMALLPIFFGA-HRSVKYHKNQK 64 (93)
Q Consensus 33 G~alAYgsLviMAllPIffGS-~RSV~~~k~qk 64 (93)
++.-.+.+|+-+|+-||+|-- +++=++.+.|+
T Consensus 9 ~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~~Q~ 41 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIYFRPMMNPEEYKKEQK 41 (58)
T ss_pred hhHHHHHHHHHHHHhhhhcccccChHHHHHHHH
Confidence 345578889999999999864 45666666663
No 21
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=25.39 E-value=14 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhcchhh
Q psy1126 36 VAYGSLVAMALLPIFFGAHRSV 57 (93)
Q Consensus 36 lAYgsLviMAllPIffGS~RSV 57 (93)
+.||..++.--+||+||+=+.+
T Consensus 23 ~~~GGvI~IGPIPIvFGs~~~~ 44 (64)
T PF01998_consen 23 VEGGGVIMIGPIPIVFGSSPRI 44 (64)
T ss_pred cceeEEEEEecccEEEcCCHHH
Confidence 4567888888999999996443
No 22
>KOG3951|consensus
Probab=24.25 E-value=1.9e+02 Score=24.40 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=35.9
Q ss_pred cCCCCCchhHHHHHHHHH---------------HHHHHHHHhhcchhhhhhhhh---------hhhhhhhhhh
Q psy1126 25 AKIPATPEGMAVAYGSLV---------------AMALLPIFFGAHRSVKYHKNQ---------KQFKAVMMLY 73 (93)
Q Consensus 25 ~k~psTpEG~alAYgsLv---------------iMAllPIffGS~RSV~~~k~q---------k~~~~~~~~~ 73 (93)
.+-|+.++-...||++++ +=.++||..|++-|-.+.-.| |||..+.-.-
T Consensus 66 iq~~~d~q~~ekaw~av~PlV~r~k~~ye~~~~lek~v~~llg~L~~~pl~~~~~l~~~QalaKQfAeil~F~ 138 (321)
T KOG3951|consen 66 IQNPADEQLQEKAWGAVVPLVGRTKSYYEHVAKIEKIVPIILGSLSSGPLPLEEQLANKQALAKQFAEILHFT 138 (321)
T ss_pred hhCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHhe
Confidence 346888999999999876 336899999999886543333 8887765443
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.84 E-value=65 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhcchhh
Q psy1126 38 YGSLVAMALLPIFFGAHRSV 57 (93)
Q Consensus 38 YgsLviMAllPIffGS~RSV 57 (93)
++.||+.+||=||++..++-
T Consensus 5 ~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554
No 24
>COG4811 Predicted membrane protein [Function unknown]
Probab=23.81 E-value=87 Score=23.90 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=28.2
Q ss_pred CchhH-HHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh
Q psy1126 30 TPEGM-AVAYGSLVAMALLPIFFGAHRSVKYHKNQKQF 66 (93)
Q Consensus 30 TpEG~-alAYgsLviMAllPIffGS~RSV~~~k~qk~~ 66 (93)
|-+|- ++.| -|..||++-+++.=+|+=+.--|+|-|
T Consensus 63 t~~ga~~Tt~-LL~al~ll~~Yi~fiR~pk~ifKe~Gf 99 (152)
T COG4811 63 TNHGALITTW-LLSALALLGFYIFFIRVPKIIFKEKGF 99 (152)
T ss_pred hccChhHHHH-HHHHHHHHHHHHHHhhhhHHHhhccCe
Confidence 45665 5666 899999999999999998877666544
No 25
>KOG4633|consensus
Probab=23.44 E-value=26 Score=27.00 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcc---------------hhhhhhhhh-----hhhhhhhhhhcCCCCCcceeccccccCCCC
Q psy1126 42 VAMALLPIFFGAH---------------RSVKYHKNQ-----KQFKAVMMLYLSPPSNQWISTNFNMSNLKL 93 (93)
Q Consensus 42 viMAllPIffGS~---------------RSV~~~k~q-----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (93)
.+||++||+.|.+ |++ ..|++ ..|-.+|---++-|| .+-.-.||-+.+|+
T Consensus 100 ~L~alv~v~~~~YY~KY~v~DWT~~~g~~~v-~~k~~i~pgdE~~P~i~d~g~~~Ps-DY~~~~Fn~~~~~~ 169 (169)
T KOG4633|consen 100 ALHALVPVWIIHYYMKYHVSDWTREKGYGIV-EKKSRIFPGDEDTPKILDTGEVIPS-DYAMKEFNDQHHKA 169 (169)
T ss_pred hheehhhhheeeeeeeeeccchhccCcceec-cccceeccCcCCCcccccccccCCc-hhhcccCCcccccC
Confidence 4799999998764 555 33444 455567777778888 55566788776653
No 26
>KOG3086|consensus
Probab=23.20 E-value=29 Score=28.82 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=26.9
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhhhhhhhcCCCCCcce
Q psy1126 45 ALLPIFFGAHRSVKYHKNQKQFKAVMMLYLSPPSNQWI 82 (93)
Q Consensus 45 AllPIffGS~RSV~~~k~qk~~~~~~~~~~~~~~~~~~ 82 (93)
-++||++|++-.- ..+++-...--|+-.|+|-++
T Consensus 150 kivPilvg~ls~~----~e~~~g~lls~Yi~Dp~NlFv 183 (296)
T KOG3086|consen 150 KIVPILVGALSPS----VEQCYGKLLSKYIKDPSNLFV 183 (296)
T ss_pred EEEeeEecccChH----HHHHHHHHHHHHhcCccceEE
Confidence 3789999998665 446677777889999999764
No 27
>PRK01622 OxaA-like protein precursor; Validated
Probab=22.89 E-value=68 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhcchhhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVKY 59 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~ 59 (93)
|.|-+..=+|||||-|++++-
T Consensus 138 g~lp~liQ~Pif~~lf~~lr~ 158 (256)
T PRK01622 138 GCLPLLIQMPILSAFYYAIRR 158 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 456656678999999999964
No 28
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=22.72 E-value=69 Score=25.46 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhh
Q psy1126 39 GSLVAMALLPIFFG 52 (93)
Q Consensus 39 gsLviMAllPIffG 52 (93)
..|++.+.+|||+|
T Consensus 263 ~vl~if~aI~iflG 276 (280)
T PF06022_consen 263 PVLSIFGAIPIFLG 276 (280)
T ss_pred HHHHHHHHHHHHhh
Confidence 36778888999999
No 29
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.61 E-value=67 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhcchhhhh
Q psy1126 38 YGSLVAMALLPIFFGAHRSVKY 59 (93)
Q Consensus 38 YgsLviMAllPIffGS~RSV~~ 59 (93)
.|+|-++.=+|||||=||+++.
T Consensus 104 ~gcLP~LIQiPIfigLy~vir~ 125 (429)
T PRK00247 104 AGCVPALIQIPVFLGLYQVLLR 125 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788899999999999965
No 30
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=59 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhcch
Q psy1126 36 VAYGSLVAMALLPIFFGAHR 55 (93)
Q Consensus 36 lAYgsLviMAllPIffGS~R 55 (93)
.-++++++.|+.|+|+|-..
T Consensus 45 ~~wv~vlifal~P~fs~~Ia 64 (121)
T COG2456 45 AFWVFVLIFALFPEFSGEIA 64 (121)
T ss_pred HHHHHHHHHHhcchHHHHHH
Confidence 35789999999999988654
No 31
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.17 E-value=1.9e+02 Score=20.16 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhh
Q psy1126 27 IPATPEGMAVAYGSLVAMALLPIFFGAHRSV 57 (93)
Q Consensus 27 ~psTpEG~alAYgsLviMAllPIffGS~RSV 57 (93)
-++.-.++++ .|++-+-.++||++|.+=-.
T Consensus 35 ~~~~~~~l~~-~g~IG~~~v~pil~G~~lG~ 64 (100)
T TIGR02230 35 TRSIWEGLGM-FGLIGWSVAIPTLLGVAVGI 64 (100)
T ss_pred CCcHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455556444 56777788899999988555
No 32
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=22.17 E-value=1e+02 Score=24.84 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhcCCC
Q psy1126 27 IPATPEGMAVAYGSLVAMALLPIFFGAHRSVKYHKNQKQFKAVMMLYLSPP 77 (93)
Q Consensus 27 ~psTpEG~alAYgsLviMAllPIffGS~RSV~~~k~qk~~~~~~~~~~~~~ 77 (93)
.-.|++||-+.-..|.+=.++-.+.++++|| .++-+.-.+++-+||+
T Consensus 95 LLfT~~amILGq~iL~lPlvia~~l~ale~~----dpr~~ela~~lgas~~ 141 (227)
T COG4662 95 LLFTQDAMILGQAILILPLVIAFVLTALESV----DPRLKELARSLGASPL 141 (227)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHcCCcHH
Confidence 3468899888887666555555566889998 5566666677777765
No 33
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=21.10 E-value=90 Score=21.60 Aligned_cols=14 Identities=36% Similarity=1.042 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhc
Q psy1126 40 SLVAMALLPIFFGA 53 (93)
Q Consensus 40 sLviMAllPIffGS 53 (93)
.|+++.++|++|+.
T Consensus 15 ~li~~~~~P~i~~~ 28 (164)
T TIGR03061 15 ALIAIMLIPLLYGG 28 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666776654
No 34
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=21.03 E-value=73 Score=27.31 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhh-------------hhhhhhh-hhhcCCCCCcceec
Q psy1126 39 GSLVAMALLPIFFGAHRSVKYHKNQ-------------KQFKAVM-MLYLSPPSNQWIST 84 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~~k~q-------------k~~~~~~-~~~~~~~~~~~~~~ 84 (93)
|+|-++.=+|||||=||.++..+-- .|..+|- -.|-++|.|-+++.
T Consensus 98 GCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~ 157 (375)
T PRK02654 98 GCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITD 157 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEec
Confidence 7899999999999999999874322 4443432 24667777777654
No 35
>PRK02944 OxaA-like protein precursor; Validated
Probab=20.95 E-value=82 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcchhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVK 58 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~ 58 (93)
|.|-.+.=+|||||=||.++
T Consensus 131 g~lp~liQ~Pifi~lf~~i~ 150 (255)
T PRK02944 131 GCLPIFIQMPILIAFYHAIM 150 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666999999999884
No 36
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=20.82 E-value=1.4e+02 Score=19.49 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=17.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHh
Q psy1126 27 IPATPEGMAVAYGSLVAMALLPIFF 51 (93)
Q Consensus 27 ~psTpEG~alAYgsLviMAllPIff 51 (93)
......|+|+....=++|.++|+++
T Consensus 38 ~~~~~~GfaiG~~~AlvLv~ip~~l 62 (64)
T PF09472_consen 38 MATGIKGFAIGFLFALVLVGIPILL 62 (64)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788776666667788888763
No 37
>PRK10586 putative oxidoreductase; Provisional
Probab=20.60 E-value=1e+02 Score=24.71 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=16.7
Q ss_pred CCCC---CchhHHHHHHHHHHHHH
Q psy1126 26 KIPA---TPEGMAVAYGSLVAMAL 46 (93)
Q Consensus 26 k~ps---TpEG~alAYgsLviMAl 46 (93)
.+|. -++|-++|||.++.+.+
T Consensus 265 ~~~~~~~~lHGeaVa~G~l~~l~l 288 (362)
T PRK10586 265 VLPQTEKFLHGTKVAYGILVQSAL 288 (362)
T ss_pred cccCCCcCCCHHHHHHHHHHHHHH
Confidence 4554 48999999999987777
No 38
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=20.48 E-value=82 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcchhhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVKY 59 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~~ 59 (93)
|+|-++.=+|||||-||+++.
T Consensus 100 gclP~liQlPi~~~ly~~ir~ 120 (304)
T PRK03449 100 GCLPMLAQIPVFLGLFHVLRS 120 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577777889999999999975
No 39
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=20.27 E-value=1e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH
Q psy1126 26 KIPATPEGMAVAYGSLVAMALLPIF 50 (93)
Q Consensus 26 k~psTpEG~alAYgsLviMAllPIf 50 (93)
+..+||+.+|.+.+.=+++.+.|.+
T Consensus 11 ~~~~tP~~iA~g~a~Gvf~g~~P~~ 35 (154)
T TIGR03546 11 NSNTSPAQLALAVALGMILGLTPFL 35 (154)
T ss_pred cCCCCHHHHHHHHHHHHHHHhccch
Confidence 4578999999999999999999954
No 40
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=20.04 E-value=84 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhcchhhh
Q psy1126 39 GSLVAMALLPIFFGAHRSVK 58 (93)
Q Consensus 39 gsLviMAllPIffGS~RSV~ 58 (93)
++|-+++=+|||||-||.++
T Consensus 110 gclp~liQ~Pif~alf~~l~ 129 (329)
T PRK01315 110 SCLPLLLQMPIFFALYRVLD 129 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999996
Done!