Query psy1126
Match_columns 93
No_of_seqs 41 out of 43
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:15:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 71.4 3.7 0.00013 23.3 2.7 18 35-52 3-20 (32)
2 3thg_A Ribulose bisphosphate c 27.8 21 0.00072 24.6 1.1 14 50-63 42-55 (107)
3 2kv5_A FST, putative uncharact 18.5 49 0.0017 18.7 1.2 17 41-57 4-20 (33)
4 2lu1_A Subtilase; SUB2 inhibit 17.0 44 0.0015 24.3 1.0 20 74-93 75-97 (149)
5 2k1e_A Water soluble analogue 16.3 1.4E+02 0.0049 18.3 3.2 38 26-63 60-98 (103)
6 1l1y_A Cellobiohydrolase; alph 14.1 43 0.0015 29.4 0.4 11 72-82 430-440 (678)
7 4fus_A RTX toxins and related 14.0 44 0.0015 29.4 0.4 11 72-82 429-439 (695)
8 1g9g_A Cellulase CEL48F; proce 13.6 46 0.0016 29.0 0.4 11 72-82 402-412 (629)
9 1z2z_A Probable tRNA pseudouri 12.4 77 0.0026 25.0 1.3 28 51-78 175-206 (446)
10 2ih3_C Voltage-gated potassium 12.0 3.1E+02 0.01 17.4 4.0 38 26-63 81-119 (122)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=71.40 E-value=3.7 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1126 35 AVAYGSLVAMALLPIFFG 52 (93)
Q Consensus 35 alAYgsLviMAllPIffG 52 (93)
|++|..|+++.+.=|||-
T Consensus 3 a~vYt~ll~~tlgiiFFA 20 (32)
T 3arc_T 3 TITYVFIFACIIALFFFA 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 689999999999999884
No 2
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=27.78 E-value=21 Score=24.61 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=11.1
Q ss_pred Hhhcchhhhhhhhh
Q psy1126 50 FFGAHRSVKYHKNQ 63 (93)
Q Consensus 50 ffGS~RSV~~~k~q 63 (93)
||||+||=.|-.+=
T Consensus 42 FFGALRsR~YDd~V 55 (107)
T 3thg_A 42 FFGALRARVYDDEV 55 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 79999998776554
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=18.54 E-value=49 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcchhh
Q psy1126 41 LVAMALLPIFFGAHRSV 57 (93)
Q Consensus 41 LviMAllPIffGS~RSV 57 (93)
++.-.+.||++|=.-++
T Consensus 4 i~~~IIaPivVGvvl~L 20 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEM 20 (33)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567889999966544
No 4
>2lu1_A Subtilase; SUB2 inhibitor prodomain, hydrolase; NMR {Plasmodium falciparum}
Probab=17.02 E-value=44 Score=24.26 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=16.3
Q ss_pred cCCCCC---cceeccccccCCCC
Q psy1126 74 LSPPSN---QWISTNFNMSNLKL 93 (93)
Q Consensus 74 ~~~~~~---~~~~~~~~~~~~~~ 93 (93)
.|.|-| -+|.|-|.|||+++
T Consensus 75 iSsPInF~CfFiPtifDmsN~~i 97 (149)
T 2lu1_A 75 ISTPINFLCIFIPTLFDMNNMDL 97 (149)
T ss_dssp EETTTTEEEEEEEECCSSCTTCS
T ss_pred cCCCceEEEEeecceecchhHHH
Confidence 577776 37899999999985
No 5
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=16.35 E-value=1.4e+02 Score=18.29 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=24.4
Q ss_pred CCCCCchhHHHHH-HHHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 26 KIPATPEGMAVAY-GSLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 26 k~psTpEG~alAY-gsLviMAllPIffGS~RSV~~~k~q 63 (93)
-.|.|+.|-.++- -.++-+.++.+++|.+-+.-.++.+
T Consensus 60 i~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 60 RYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp SCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577887765543 2455577778888888776554444
No 6
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Probab=14.14 E-value=43 Score=29.37 Aligned_cols=11 Identities=55% Similarity=1.174 Sum_probs=8.8
Q ss_pred hhcCCCCCcce
Q psy1126 72 LYLSPPSNQWI 82 (93)
Q Consensus 72 ~~~~~~~~~~~ 82 (93)
.|-.||||||+
T Consensus 430 VYhDPpSN~Wf 440 (678)
T 1l1y_A 430 VYADPGSNQWF 440 (678)
T ss_dssp SCBTTBTTCBT
T ss_pred ccCCCCCCCcc
Confidence 47788999986
No 7
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=13.98 E-value=44 Score=29.43 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.1
Q ss_pred hhcCCCCCcce
Q psy1126 72 LYLSPPSNQWI 82 (93)
Q Consensus 72 ~~~~~~~~~~~ 82 (93)
.|-.||||+|+
T Consensus 429 VYhDPpSN~Wf 439 (695)
T 4fus_A 429 VYHDPGSGTWF 439 (695)
T ss_dssp SCBTTBTTTBT
T ss_pred cccCCCCCCcc
Confidence 47789999996
No 8
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=13.59 E-value=46 Score=28.98 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=9.1
Q ss_pred hhcCCCCCcce
Q psy1126 72 LYLSPPSNQWI 82 (93)
Q Consensus 72 ~~~~~~~~~~~ 82 (93)
.|-.||||+|+
T Consensus 402 VYhDPpSN~Wf 412 (629)
T 1g9g_A 402 VYADPGSNTWF 412 (629)
T ss_dssp SCBTTBTTSBT
T ss_pred ccCCCCCCCcc
Confidence 47789999996
No 9
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=12.43 E-value=77 Score=24.97 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=19.6
Q ss_pred hhcchhhhhhhhh----hhhhhhhhhhcCCCC
Q psy1126 51 FGAHRSVKYHKNQ----KQFKAVMMLYLSPPS 78 (93)
Q Consensus 51 fGS~RSV~~~k~q----k~~~~~~~~~~~~~~ 78 (93)
||+.|..++...+ .+|+....+||..|.
T Consensus 175 FG~~~~~t~~iG~~ll~g~~~~Av~lil~~~~ 206 (446)
T 1z2z_A 175 FGSVRPVTHLVGKAIVEGNFEKAALLYIAEPF 206 (446)
T ss_dssp TCSSSCCHHHHHHHHHHTCHHHHHHHHHSCCC
T ss_pred cCCCCCCcHHHHHHHHcCCHHHHHHHHhcCCC
Confidence 4555566666666 778888888887663
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=12.01 E-value=3.1e+02 Score=17.36 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHH-HHHHHHHHHHHhhcchhhhhhhhh
Q psy1126 26 KIPATPEGMAVAYG-SLVAMALLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 26 k~psTpEG~alAYg-sLviMAllPIffGS~RSV~~~k~q 63 (93)
-.|.|+.|-.++-. .++-+.++..++|.+-+.-..+.|
T Consensus 81 i~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 81 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888765532 334456677788888777544444
Done!