Query psy1126
Match_columns 93
No_of_seqs 41 out of 43
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 22:15:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1126.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1126hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 30.0 39 0.0028 19.6 4.2 40 26-65 60-100 (103)
2 d1g9ga_ a.102.1.2 (A:) Process 12.7 24 0.0018 28.7 0.4 11 72-82 402-412 (629)
3 d1l1ya_ a.102.1.2 (A:) Process 12.2 25 0.0018 28.6 0.4 11 72-82 403-413 (642)
4 d1zd0a1 d.329.1.1 (A:9-144) Hy 10.5 57 0.0042 21.0 1.7 31 49-79 44-78 (136)
5 d2axtk1 f.23.36.1 (K:10-46) Ph 9.7 37 0.0027 18.3 0.4 24 31-54 3-26 (37)
6 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 9.1 45 0.0033 19.4 0.7 10 38-47 1-10 (75)
7 d1iwga8 f.35.1.1 (A:513-566,A: 8.1 1.2E+02 0.0089 19.5 2.7 22 36-57 63-84 (222)
8 d1vcla2 b.42.2.1 (A:151-283) H 8.1 16 0.0012 21.3 -1.7 11 48-58 2-12 (133)
9 d1vjla_ d.257.1.1 (A:) Hypothe 8.0 18 0.0013 23.4 -1.7 18 46-63 31-48 (151)
10 d1wb0a2 d.26.3.1 (A:267-336) C 7.9 47 0.0034 18.2 0.4 6 78-83 62-67 (68)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.97 E-value=39 Score=19.56 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCCCCchhHHHH-HHHHHHHHHHHHHhhcchhhhhhhhhhh
Q psy1126 26 KIPATPEGMAVA-YGSLVAMALLPIFFGAHRSVKYHKNQKQ 65 (93)
Q Consensus 26 k~psTpEG~alA-YgsLviMAllPIffGS~RSV~~~k~qk~ 65 (93)
-.|.|+.|..++ ..+++-++++.+++|.+-+.-..+++|+
T Consensus 60 i~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~r 100 (103)
T d1r3jc_ 60 LYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQER 100 (103)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899998764 3355556677888888877655555543
No 2
>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium cellulolyticum [TaxId: 1521]}
Probab=12.66 E-value=24 Score=28.68 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=9.4
Q ss_pred hhcCCCCCcce
Q psy1126 72 LYLSPPSNQWI 82 (93)
Q Consensus 72 ~~~~~~~~~~~ 82 (93)
.|-.||||+|.
T Consensus 402 VYhDPpSN~Wf 412 (629)
T d1g9ga_ 402 VYADPGSNTWF 412 (629)
T ss_dssp SCBTTBTTSBT
T ss_pred cccCCCCCCcc
Confidence 57899999996
No 3
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium thermocellum [TaxId: 1515]}
Probab=12.20 E-value=25 Score=28.62 Aligned_cols=11 Identities=55% Similarity=1.174 Sum_probs=9.4
Q ss_pred hhcCCCCCcce
Q psy1126 72 LYLSPPSNQWI 82 (93)
Q Consensus 72 ~~~~~~~~~~~ 82 (93)
.|-.||||+|.
T Consensus 403 VYhDPpSN~Wf 413 (642)
T d1l1ya_ 403 VYADPGSNQWF 413 (642)
T ss_dssp SCBTTBTTCBT
T ss_pred cccCCCCCCcc
Confidence 57899999995
No 4
>d1zd0a1 d.329.1.1 (A:9-144) Hypothetical protein PF0523 {Pyrococcus furiosus [TaxId: 2261]}
Probab=10.45 E-value=57 Score=20.98 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHhhcchhhhhhhhh----hhhhhhhhhhcCCCCC
Q psy1126 49 IFFGAHRSVKYHKNQ----KQFKAVMMLYLSPPSN 79 (93)
Q Consensus 49 IffGS~RSV~~~k~q----k~~~~~~~~~~~~~~~ 79 (93)
+.+..+|+++..+.. +-...=+++||||-.|
T Consensus 44 v~~A~~~A~~a~~~g~~~art~~~Eil~~lS~~~~ 78 (136)
T d1zd0a1 44 VIFATIIAIKAVKEGRSIAKTVPGEILVRLSGNRQ 78 (136)
T ss_dssp HHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHcCCcccCCcchhhhhhhccccc
Confidence 445556666555444 6677778999998655
No 5
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.74 E-value=37 Score=18.28 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Q psy1126 31 PEGMAVAYGSLVAMALLPIFFGAH 54 (93)
Q Consensus 31 pEG~alAYgsLviMAllPIffGS~ 54 (93)
||.-++---..=+|-++|+||=.+
T Consensus 3 Peay~~f~PivdvlPiIPv~f~lL 26 (37)
T d2axtk1 3 PEAYAIFDPLVDVLPVIPVLFLAL 26 (37)
T ss_dssp CGGGGGCHHHHHHGGGHHHHHHHH
T ss_pred chhhhhhchHHHHhccHHHHHHHH
Confidence 344333333444777888887543
No 6
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.13 E-value=45 Score=19.38 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=7.1
Q ss_pred HHHHHHHHHH
Q psy1126 38 YGSLVAMALL 47 (93)
Q Consensus 38 YgsLviMAll 47 (93)
|..|+.|||.
T Consensus 1 Y~~LI~~Ai~ 10 (75)
T d1kq8a_ 1 YIALITMAIR 10 (75)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 6677777765
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.07 E-value=1.2e+02 Score=19.48 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhcchhh
Q psy1126 36 VAYGSLVAMALLPIFFGAHRSV 57 (93)
Q Consensus 36 lAYgsLviMAllPIffGS~RSV 57 (93)
.+-+.+++..++=++|+|+|..
T Consensus 63 ~~la~i~i~liL~~~frS~~~~ 84 (222)
T d1iwga8 63 YAISLIVVFLCLAALYESWSIP 84 (222)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3444555666667778888765
No 8
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1 and 2 {Cucumaria echinata [TaxId: 40245]}
Probab=8.06 E-value=16 Score=21.29 Aligned_cols=11 Identities=36% Similarity=0.769 Sum_probs=7.5
Q ss_pred HHHhhcchhhh
Q psy1126 48 PIFFGAHRSVK 58 (93)
Q Consensus 48 PIffGS~RSV~ 58 (93)
|+|+|.+|.+.
T Consensus 2 ~~~~g~I~n~~ 12 (133)
T d1vcla2 2 ELFYGRLRNEK 12 (133)
T ss_dssp EEEEEEEEETT
T ss_pred CceEEEEEECC
Confidence 46777777763
No 9
>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}
Probab=8.05 E-value=18 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=13.8
Q ss_pred HHHHHhhcchhhhhhhhh
Q psy1126 46 LLPIFFGAHRSVKYHKNQ 63 (93)
Q Consensus 46 llPIffGS~RSV~~~k~q 63 (93)
+||||+|..-+..+....
T Consensus 31 ~LPI~Ig~~EA~~I~~~l 48 (151)
T d1vjla_ 31 VLPIWIGACEGHALALAM 48 (151)
T ss_dssp EEEEECCHHHHHHHHHHH
T ss_pred EEEEEEChHHHHHHHHHH
Confidence 589999998887666554
No 10
>d1wb0a2 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.95 E-value=47 Score=18.20 Aligned_cols=6 Identities=50% Similarity=1.370 Sum_probs=5.0
Q ss_pred CCccee
Q psy1126 78 SNQWIS 83 (93)
Q Consensus 78 ~~~~~~ 83 (93)
.+|||+
T Consensus 62 ~~qWis 67 (68)
T d1wb0a2 62 DNQWVG 67 (68)
T ss_dssp TTEEEE
T ss_pred CCEEEe
Confidence 789997
Done!