RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1126
(93 letters)
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
Length = 420
Score = 31.0 bits (70), Expect = 0.052
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 3 DIAEDFKEVIKENVTEAVKNATAKIPATPEGMA---VAYGSLVAMALLPIFFGAHRSVKY 59
DI +DF E N K + + L+ +L F ++ K
Sbjct: 82 DIWKDFVE--------WFYNKQEKFDVFSNHLESFNYDFEYLIQKNILKNF---NKFKKL 130
Query: 60 HKNQKQFKAVMMLY 73
++N + + +M L+
Sbjct: 131 YENNYELEDIMKLF 144
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 28.2 bits (64), Expect = 0.53
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 4 IAEDFKEVIKE--NVTEAVKNATAKIPATPEGM 34
IA D + +IKE + + N KIP TPEG+
Sbjct: 59 IALDAEGMIKEGRELAKIAPNVVVKIPMTPEGL 91
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. This
family contains a region from the common kinase core
found in the type I phosphatidylinositol-4-phosphate
5-kinase (PIP5K) family as described in. The family
consists of various type I, II and III PIP5K enzymes.
PIP5K catalyzes the formation of
phosphoinositol-4,5-bisphosphate via the phosphorylation
of phosphatidylinositol-4-phosphate a precursor in the
phosphinositide signaling pathway.
Length = 255
Score = 27.6 bits (62), Expect = 0.69
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 46 LLPIFFGAHRSVKYHKNQKQFKAVMMLYLSPPSNQWISTNFNM 88
LLP F+G +R VK +K+ V+M L I +++
Sbjct: 61 LLPKFYGLYR-VKKKGGEKKIYFVVMENLFYSPRD-IHRRYDL 101
>gnl|CDD|214346 CHL00045, ccsA, cytochrome c biogenesis protein.
Length = 319
Score = 27.9 bits (63), Expect = 0.71
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 39 GSLVAMALLPIFFGAHRSVKYHKNQ---KQFKAVMMLYLSPPSNQWISTNF 86
GSL+++ALL I F + + KN K F + YL+ +N +T+F
Sbjct: 154 GSLLSIALLVITFRKNIDIFGKKNNLLNKSFSFSEIQYLNEKNNVLKNTSF 204
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase,
TalC/MipB family. This model represents a family that
includes the E. coli transaldolase homologs TalC and
MipB, both shown to be fructose-6-phosphate aldolases
rather than transaldolases as previously thought. It is
related to but distinct from the transaldolase family
of E. coli TalA and TalB. The member from Bacillus
subtilis becomes phosphorylated during early stationary
phase but not during exponential growth [Energy
metabolism, Pentose phosphate pathway].
Length = 213
Score = 27.5 bits (61), Expect = 0.92
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 4 IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMA 35
I+ D + +++E + + N KIP T EG+
Sbjct: 59 ISLDAEGMVEEAKELAKLAPNIVVKIPMTSEGLK 92
>gnl|CDD|147786 pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein
(Gp-FAR-1). Parasitic nematodes produce at least two
structurally novel classes of small helix-rich retinol-
and fatty-acid-binding proteins that have no
counterparts in their plant or animal hosts and thus
represent potential targets for new nematicides.
Gp-FAR-1 is a member of the nematode-specific
fatty-acid- and retinol-binding (FAR) family of
proteins but localises to the surface of the organism,
placing it in a strategic position for interaction with
the host. Gp-FAR-1 functions as a broad-spectrum
retinol- and fatty-acid-binding protein, and it is
thought that it is involved in the evasion of primary
host plant defence systems.
Length = 154
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 DIAEDFKEVIKENVTEAVKNATAK 26
DI ++KE+I V EA K+ T +
Sbjct: 1 DIPAEYKELIPAEVVEAYKSLTPE 24
>gnl|CDD|213586 TIGR01104, V_PPase, vacuolar-type H(+)-translocating
pyrophosphatase. This model describes proton
pyrophosphatases from eukaryotes (predominantly plants),
archaea and bacteria. It is an integral membrane protein
and is suggested to have about 15 membrane spanning
domains. Proton translocating inorganic pyrophosphatase,
like H(+)-ATPase, acidifies the vacuoles and is pivotal
to the vacuolar secondary active transport systems in
plants [Transport and binding proteins, Cations and iron
carrying compounds].
Length = 695
Score = 27.1 bits (60), Expect = 1.6
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 1 MADIAEDFKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPIFFGA 53
MA + +E + + +AV N TA A +G A+ +LVA+AL FGA
Sbjct: 449 MAGLPHRVRE--RTDALDAVGNTTA---AIGKGFAIGSAALVALAL----FGA 492
>gnl|CDD|147887 pfam05974, DUF892, Domain of unknown function (DUF892). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 159
Score = 26.4 bits (59), Expect = 1.8
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 1 MADIAEDFKEVIKENVT-EAVKNATAKIPATPEGMAV------AYGSLVAMA 45
M + + +E+++E+ E VK+A A I A AV AYG+L+A A
Sbjct: 73 MEGLVAEGQELLEEDAGDEVVKDA-ALIAA---AQAVEHYEIAAYGTLIAAA 120
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 26.4 bits (59), Expect = 2.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 10 EVIKENVTEAVKNATAKIPAT-PEGMAVAYGSLVAMALLPIF 50
+V + + EA ++A A+ E MA A G A LPI
Sbjct: 114 DVERRAIKEAAESAGAREVYLIEEPMAAAIG-----AGLPIM 150
>gnl|CDD|220515 pfam10003, DUF2244, Integral membrane protein (DUF2244). This
domain, found in various bacterial hypothetical and
putative membrane proteins, has no known function.
Length = 140
Score = 26.0 bits (58), Expect = 2.5
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 30 TPEGMAVAYGSLVAMALLP-IFF 51
+P G G+L A++LL + F
Sbjct: 8 SPRGFLAFMGALAAVSLLIALAF 30
>gnl|CDD|236520 PRK09444, pntB, pyridine nucleotide transhydrogenase; Provisional.
Length = 462
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 7 DFKEVIKENVTEAVKNATAKIPATPEGMAVA 37
+ +E E V E +KN+ + I GMAVA
Sbjct: 290 EHRETTAEEVAEMLKNSHSVIITPGYGMAVA 320
>gnl|CDD|182570 PRK10586, PRK10586, putative oxidoreductase; Provisional.
Length = 362
Score = 25.8 bits (57), Expect = 3.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 19 AVKNATAKIPATPE---GMAVAYGSLVAMALL 47
AV N +P T + G VAYG LV ALL
Sbjct: 258 AVHNGLTVLPQTEKFLHGTKVAYGILVQSALL 289
>gnl|CDD|183655 PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 25.9 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 4 IAEDFKEVIKENV--TEAVKNATAKIPATPEGMA 35
++ D + +++E A+ KIP T EG+A
Sbjct: 61 MSRDAQGMVEEAKRLRNAIPGIVVKIPVTAEGLA 94
>gnl|CDD|220436 pfam09843, DUF2070, Predicted membrane protein (DUF2070). This
domain of unknown function is found in various bacterial
hypothetical proteins, as well as in prokaryotic
polyketide synthase.
Length = 179
Score = 25.7 bits (57), Expect = 3.5
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 8 FKEVIKENVTEAVKNATAKIPATPEGMAVAYGSLVAMALLPI 49
I E EAV NA A + G Y + M P+
Sbjct: 131 SPREIIETRREAVSNAEADLEPVEVGYGEVYVKVYVMGEEPL 172
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 25.7 bits (57), Expect = 4.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 21 KNATAKIPATPEG 33
N K+PATPEG
Sbjct: 135 PNLMIKVPATPEG 147
>gnl|CDD|235117 PRK03343, PRK03343, transaldolase; Validated.
Length = 368
Score = 25.6 bits (57), Expect = 4.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 22 NATAKIPATPEGM 34
N KIPATPEG+
Sbjct: 136 NLMIKIPATPEGL 148
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 25.3 bits (56), Expect = 5.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 36 VAYGSLVAMALLPIFFGAHRSVKYH---KNQKQFKAVMMLYL 74
+ Y LVA A L + A+RS+K +QK K M L L
Sbjct: 228 LWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLAL 269
>gnl|CDD|176450 cd08663, DAP_dppA_1, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 266
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 10 EVIKENVTEAVKNATAKIPATPEG 33
+I+E EAV+ P TP G
Sbjct: 194 ALIREAAAEAVRRLGKVKPLTPPG 217
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 24.8 bits (55), Expect = 6.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 26 KIPATPEGMAVA 37
KIPAT EG+
Sbjct: 109 KIPATWEGLKAI 120
>gnl|CDD|218701 pfam05698, Trigger_C, Bacterial trigger factor protein (TF)
C-terminus. In the E. coli cytosol, a fraction of the
newly synthesised proteins requires the activity of
molecular chaperones for folding to the native state.
The major chaperones implicated in this folding process
are the ribosome-associated Trigger Factor (TF), and
the DnaK and GroEL chaperones with their respective
co-chaperones. Trigger Factor is an ATP-independent
chaperone and displays chaperone and
peptidyl-prolyl-cis-trans-isomerase (PPIase) activities
in vitro. It is composed of at least three domains, an
N-terminal domain which mediates association with the
large ribosomal subunit, a central substrate binding
and PPIase domain with homology to FKBP proteins, and a
C-terminal domain of unknown function. The positioning
of TF at the peptide exit channel, together with its
ability to interact with nascent chains as short as 57
residues renders TF a prime candidate for being the
first chaperone that binds to the nascent polypeptide
chains. This family represents the C-terminal region of
the protein.
Length = 162
Score = 24.9 bits (55), Expect = 7.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 6 EDFKEVIKENVTEAVKNATA 25
E+ KE +++ + E K ATA
Sbjct: 3 EELKEKLRKQLEEEKKEATA 22
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 24.6 bits (54), Expect = 9.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 46 LLPIFFGAHRSVKYHKNQKQFK---AVM--MLY 73
LLP FFG +R VK K + K VM + Y
Sbjct: 115 LLPKFFGLYR-VKV-KGGTEKKIYFLVMENLFY 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.129 0.365
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,619,411
Number of extensions: 365377
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 35
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)