RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1126
         (93 letters)



>1wx0_A Transaldolase; structural genomics, riken structural
           genomics/proteomics initiative, RSGI, transferas; 2.27A
           {Thermus thermophilus HB8} SCOP: c.1.10.1
          Length = 223

 Score = 29.2 bits (66), Expect = 0.15
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 4   IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMAV 36
            A + + ++ E   +     N   K+P T EG+  
Sbjct: 68  TALEAEAMVAEGRRLAAIHPNIVVKLPTTEEGLKA 102


>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
          swapping, lyase; 1.93A {Escherichia coli} SCOP:
          c.1.10.1
          Length = 220

 Score = 28.4 bits (64), Expect = 0.25
 Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 4  IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMAV 36
          +A   + ++ +   +   + +   K+P T EG+A 
Sbjct: 61 MATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAA 95


>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
           JOI for structural genomics, JCSG; HET: GOL; 2.40A
           {Thermotoga maritima} SCOP: c.1.10.1
          Length = 230

 Score = 28.3 bits (64), Expect = 0.25
 Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 4   IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMAV 36
           ++ D++ +++E   + +  +    KIP TP+G+  
Sbjct: 71  VSLDYEGMVREARELAQISEYVVIKIPMTPDGIKA 105


>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
          selection, domain swapping transferase; HET: I22; 1.65A
          {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
          3s1w_A*
          Length = 223

 Score = 28.3 bits (64), Expect = 0.26
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 4  IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMAV 36
          ++  ++ +++E   +     NA  KIP T +G+  
Sbjct: 62 VSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRA 96


>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
          {Bacillus subtilis}
          Length = 212

 Score = 28.3 bits (64), Expect = 0.28
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 4  IAEDFKEVIKE--NVTEAVKNATAKIPATPEGMAV 36
          I+   +E+I+E   + +   N T KIP T +G+  
Sbjct: 60 ISLKAEEMIEEGKELAKIAPNITVKIPMTSDGLKA 94


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 7/26 (26%)

Query: 31   PEGMAVA------YGSLVAMA-LLPI 49
            P     A      Y +L ++A ++ I
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSI 1779


>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
           structural genomics, JCSG, protein structure initiative,
           PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
           e.22.1.2
          Length = 376

 Score = 24.2 bits (53), Expect = 8.8
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 19  AVKNATAKIPATPE---GMAVAYGSLVAMAL 46
           A+ N    +  T +   G  VA G L ++ L
Sbjct: 265 AIHNGLTVLENTHKYLHGEKVAIGVLASLFL 295


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,375,396
Number of extensions: 67750
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)