RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1126
         (93 letters)



>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 427

 Score = 23.9 bits (51), Expect = 3.8
 Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 59 YHKNQKQFKAVMML-YLSPPSNQWISTNFNMSNL 91
          + +  K F     + Y     N W ST+      
Sbjct: 51 WKEGDKSFYFDTNVAYSVNQQNDWESTDPAFREA 84


>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 60 HKNQKQFKAVMMLYLSPPSNQWIS 83
           K      AV+ LY +  +  W  
Sbjct: 8  KKCVTMSSAVVQLYAADRNCMWSK 31


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 274

 Score = 23.6 bits (51), Expect = 5.5
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 9   KEVIKENVTEAVKNATAKIPATPEG 33
             ++ E    A++N     P TP  
Sbjct: 191 GRLLTEKTAFALQNKDKVKPLTPPD 215


>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52
           recombinase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 22.6 bits (48), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 1   MADIAEDFKEVIKENVTEAVKNA 23
           +   A   ++  KE VT+ +K A
Sbjct: 108 LKSKALSLEKARKEAVTDGLKRA 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,935
Number of extensions: 11784
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 14
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)