BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11261
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GZJ|A Chain A, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
 pdb|1GZJ|B Chain B, Structure Of Thermoascus Aurantiacus Family 5
           Endoglucanase
          Length = 304

 Score = 33.1 bits (74), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 113 HDSD----VELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPS- 167
           HD D    + L  A I GI+     +    +  N W        W +   ++ + T PS 
Sbjct: 134 HDMDQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSWTGAW---TWTNVNDNMKSLTDPSD 190

Query: 168 -LLYNMHHEMTSDGSQMAETCLRELIGR 194
            ++Y MH  + SDGS  + TC+   IG+
Sbjct: 191 KIIYEMHQYLDSDGSGTSATCVSSTIGQ 218


>pdb|1H1N|A Chain A, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
 pdb|1H1N|B Chain B, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
          Length = 305

 Score = 33.1 bits (74), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 113 HDSD----VELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPS- 167
           HD D    + L  A I GI+     +    +  N W        W +   ++ + T PS 
Sbjct: 135 HDMDQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSWTGAW---TWTNVNDNMKSLTDPSD 191

Query: 168 -LLYNMHHEMTSDGSQMAETCLRELIGR 194
            ++Y MH  + SDGS  + TC+   IG+
Sbjct: 192 KIIYEMHQYLDSDGSGTSATCVSSTIGQ 219


>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
 pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
          Length = 789

 Score = 27.7 bits (60), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 125 SGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRT 164
           SG Q I+  T  D+ A   W SH   K W    GDL  +T
Sbjct: 554 SGSQ-IVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKAQT 592


>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
           D465n Mutant Complexed With A Xyloglucan Heptasaccharide
 pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
           Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
           D465n Mutant Complexed With A Xyloglucan Heptasaccharide
          Length = 789

 Score = 27.7 bits (60), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 125 SGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRT 164
           SG Q I+  T  D+ A   W SH   K W    GDL  +T
Sbjct: 554 SGSQ-IVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKAQT 592


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,028,284
Number of Sequences: 62578
Number of extensions: 258636
Number of successful extensions: 488
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 6
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)