Query psy11261
Match_columns 247
No_of_seqs 133 out of 159
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:22:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 95.7 0.021 7.1E-07 48.1 6.6 185 15-234 13-207 (242)
2 2qk2_A LP04448P; mini spindles 91.9 0.56 1.9E-05 39.1 8.0 163 13-212 52-220 (242)
3 2qk1_A Protein STU2; STU2P, XM 88.4 1.2 4.3E-05 38.1 7.4 186 16-232 15-220 (249)
4 2bpt_A Importin beta-1 subunit 85.4 0.93 3.2E-05 43.9 5.4 150 65-229 229-395 (861)
5 2bpt_A Importin beta-1 subunit 84.6 4.9 0.00017 38.8 10.1 152 40-213 575-734 (861)
6 1u6g_C TIP120 protein, CAND1; 83.8 1.8 6.1E-05 44.6 6.9 138 40-195 453-600 (1230)
7 4fdd_A Transportin-1; heat rep 81.8 1.7 5.7E-05 42.9 5.6 141 68-229 223-385 (852)
8 1ibr_B P95, importin beta-1 su 81.7 1.7 5.9E-05 38.4 5.2 157 66-229 223-392 (462)
9 2jdq_A Importin alpha-1 subuni 81.0 5.8 0.0002 35.0 8.4 155 40-215 39-205 (450)
10 2qk1_A Protein STU2; STU2P, XM 76.1 9.7 0.00033 32.3 8.0 74 68-141 154-229 (249)
11 4b8j_A Importin subunit alpha- 73.0 9.7 0.00033 34.9 7.7 153 41-214 94-256 (528)
12 1b3u_A Protein (protein phosph 71.8 4.1 0.00014 37.3 4.8 67 63-134 129-195 (588)
13 1b3u_A Protein (protein phosph 69.9 8.2 0.00028 35.2 6.4 136 67-228 448-583 (588)
14 1qgr_A Protein (importin beta 68.5 31 0.0011 33.2 10.5 152 40-214 347-517 (876)
15 2vgl_B AP-2 complex subunit be 67.3 26 0.00089 33.2 9.6 71 63-134 239-313 (591)
16 4hxt_A De novo protein OR329; 67.2 7 0.00024 31.3 4.8 139 37-195 99-243 (252)
17 1qgr_A Protein (importin beta 66.5 45 0.0015 32.0 11.2 172 41-234 628-829 (876)
18 1ibr_B P95, importin beta-1 su 65.9 39 0.0013 29.5 9.8 93 39-134 148-248 (462)
19 1u6g_C TIP120 protein, CAND1; 65.6 36 0.0012 34.9 10.8 168 41-232 68-243 (1230)
20 4db8_A Armadillo-repeat protei 63.5 16 0.00054 29.6 6.4 103 28-132 19-125 (252)
21 1wa5_B Importin alpha subunit; 63.4 10 0.00035 34.9 5.8 144 65-231 304-456 (530)
22 4fdd_A Transportin-1; heat rep 60.9 4 0.00014 40.2 2.6 115 15-135 357-474 (852)
23 4hxt_A De novo protein OR329; 60.2 14 0.00047 29.5 5.4 71 63-134 173-243 (252)
24 3b2a_A TON_1937, putative unch 58.9 57 0.002 28.8 9.3 161 63-231 36-217 (265)
25 1w63_A Adapter-related protein 57.4 21 0.00072 34.2 6.9 118 7-133 261-380 (618)
26 1wa5_B Importin alpha subunit; 54.0 22 0.00075 32.7 6.2 90 44-134 364-459 (530)
27 4db6_A Armadillo repeat protei 52.9 17 0.00058 28.5 4.7 68 63-131 141-208 (210)
28 1xqr_A HSPBP1 protein; armadil 52.8 26 0.00087 30.8 6.2 94 39-133 140-239 (296)
29 4db6_A Armadillo repeat protei 49.3 24 0.00083 27.6 5.1 137 37-193 67-209 (210)
30 2jdq_A Importin alpha-1 subuni 49.2 23 0.00077 31.1 5.3 88 44-134 299-392 (450)
31 4ffb_C Protein STU2; tubulin f 48.2 54 0.0018 27.5 7.4 162 13-211 10-188 (278)
32 4db8_A Armadillo-repeat protei 45.4 20 0.00067 29.0 4.0 94 37-131 151-250 (252)
33 3c5t_B Exendin-4, exenatide; l 44.3 13 0.00044 22.6 1.9 13 18-30 2-14 (31)
34 3tpo_A Importin subunit alpha- 42.0 49 0.0017 30.6 6.6 89 41-130 96-189 (529)
35 4b8j_A Importin subunit alpha- 34.3 50 0.0017 30.0 5.3 70 63-134 374-445 (528)
36 3tpo_A Importin subunit alpha- 34.1 55 0.0019 30.2 5.6 68 65-133 382-450 (529)
37 1sz9_A PCF11 protein; RNA poly 32.3 88 0.003 24.6 5.8 106 3-112 29-142 (144)
38 3now_A UNC-45 protein, SD10334 31.7 52 0.0018 33.4 5.3 113 63-194 668-783 (810)
39 1xm9_A Plakophilin 1; armadill 30.1 76 0.0026 28.9 5.8 126 67-211 9-136 (457)
40 3ul1_B Importin subunit alpha- 29.9 60 0.0021 29.9 5.1 68 65-133 363-431 (510)
41 3tt9_A Plakophilin-2; cell adh 27.7 2.7E+02 0.0093 23.3 8.7 48 181-228 168-225 (233)
42 3ul1_B Importin subunit alpha- 24.8 1.2E+02 0.004 27.9 6.1 89 40-131 76-171 (510)
43 1w63_A Adapter-related protein 24.6 4.5E+02 0.015 24.8 11.2 84 103-213 313-396 (618)
44 2cqq_A RSGI RUH-037, DNAJ homo 22.8 20 0.00069 25.3 0.3 22 11-33 30-51 (72)
45 4flb_A Regulation of nuclear P 21.6 1.4E+02 0.0049 22.4 5.1 55 4-62 27-81 (132)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.68 E-value=0.021 Score=48.06 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=119.6
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH--HHHHHHHh-cCCcchhhHhHHHHHHhhccc
Q psy11261 15 LDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK--KLIQKLLE-CHEHVLQILATQSFVKYANIE 91 (247)
Q Consensus 15 L~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~--~ii~~lL~-s~~~~l~i~~~~tf~~F~~~~ 91 (247)
++|+++-+.+.....=|+.|.+ .+..+.+++..|++..-.-|.+ .++..+|. ..+.+.+..|+.++..++..-
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~----a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKE----SLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHH----HHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHhhhccCCHHHHHH----HHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555556665555666655 5567888999887631123444 66677775 788888999999999998643
Q ss_pred CCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccc
Q psy11261 92 EDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYN 171 (247)
Q Consensus 92 ~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n 171 (247)
. +.+....+.+++.......+....+|.++..+|.+++.... ++. ++|.++..
T Consensus 89 ~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------------~~~------------ll~~l~~~ 141 (242)
T 2qk2_A 89 A--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------------LEA------------QQESIVES 141 (242)
T ss_dssp G--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------------HHH------------HHHHHHHH
T ss_pred h--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------------HHH------------HHHHHHHH
Confidence 2 24666667888888887777677999999999999987431 122 66777766
Q ss_pred cccCCCCCh--HHHHHHHHHHHHcccc-----ccccchhhhhhhhhccCCCCCCChhhHHHHHHHHHHHh
Q psy11261 172 MHHEMTSDG--SQMAETCLRELIGRAA-----FGHVKGVVGPVLNHLDMHRLWPPKDFAYQVFRILVFSV 234 (247)
Q Consensus 172 ~~~~~~~~p--~~~a~~CL~~l~~~a~-----~ttir~vl~p~~~~~D~~~~W~~~~~A~~~~~~~~~s~ 234 (247)
+.+ ++| +.-+-.+|..++..++ ...+..++..++..++.. .|.-..-|..++..++..+
T Consensus 142 l~~---~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 142 LSN---KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp TTC---SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HcC---CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 653 456 3344444555444331 123556777777777443 3555577777777655444
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.92 E-value=0.56 Score=39.07 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=102.3
Q ss_pred CchhhhHHHHHHHHHHHHhhcCCCcee---eHHHHHHHHHHhccccchhhhHHHHHHHHHh---cCCcchhhHhHHHHHH
Q psy11261 13 EKLDRIGDYLYETASRDISRKRTQYVL---MSLEAMNQILLSCHAHALNLLQKKLIQKLLE---CHEHVLQILATQSFVK 86 (247)
Q Consensus 13 ~KL~KIg~yLekR~~kdl~r~r~g~V~---V~l~i~~kLl~~C~~q~l~LFa~~ii~~lL~---s~~~~l~i~~~~tf~~ 86 (247)
..+.+|...|.+++.+| .|+. -++.++..|....... +.-+++.++..|++ ..+...+.-++.++..
T Consensus 52 ~~~~~i~~~L~~~l~kd------~~~~V~~~a~~~l~~la~~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~ 124 (242)
T 2qk2_A 52 GEYGALVSALKKVITKD------SNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDA 124 (242)
T ss_dssp CCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45678888888887655 3333 4555666666655553 44555577777775 3556677888888888
Q ss_pred hhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCcccc
Q psy11261 87 YANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIP 166 (247)
Q Consensus 87 F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivP 166 (247)
++..- .++.+++.+...-.....++|...+..|..++...+.+... ..++.. ++|
T Consensus 125 ~~~~~--------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~-----~~~l~~------------l~p 179 (242)
T 2qk2_A 125 IYAST--------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN-----KKLLKL------------LTT 179 (242)
T ss_dssp HHTTS--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC-----HHHHHH------------HHH
T ss_pred HHHcC--------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc-----HHHHHH------------HHH
Confidence 77532 14567777766555555589999999999988754322110 123334 888
Q ss_pred ccccccccCCCCChHHHHHHHHHHHHccccccccchhhhhhhhhcc
Q psy11261 167 SLLYNMHHEMTSDGSQMAETCLRELIGRAAFGHVKGVVGPVLNHLD 212 (247)
Q Consensus 167 slL~n~~~~~~~~p~~~a~~CL~~l~~~a~~ttir~vl~p~~~~~D 212 (247)
.+...+++. ......-|..|+-.|+..... ..+.|.+..+|
T Consensus 180 ~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~----~~~~~~l~~L~ 220 (242)
T 2qk2_A 180 SLVKTLNEP-DPTVRDSSAEALGTLIKLMGD----KAVTPLLADVD 220 (242)
T ss_dssp HHHHHHTSS-CHHHHHHHHHHHHHHHHHHCH----HHHGGGGTTSC
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHHHHHHcCH----HHHHHHHHhcC
Confidence 888877532 122367889999888876542 33444444443
No 3
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.42 E-value=1.2 Score=38.06 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=113.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCceeeHHHHHHH-HHHhccccch---hhhHH--HHHHHHH-hcCCcchhhHhHHHHHHhh
Q psy11261 16 DRIGDYLYETASRDISRKRTQYVLMSLEAMNQ-ILLSCHAHAL---NLLQK--KLIQKLL-ECHEHVLQILATQSFVKYA 88 (247)
Q Consensus 16 ~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~k-Ll~~C~~q~l---~LFa~--~ii~~lL-~s~~~~l~i~~~~tf~~F~ 88 (247)
+|+.+...+++..-=|++|. =+++.+.+ +++.|++- . .=|.+ .++...| ...|+..+..|+..+..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk----~al~~L~~~~~~~~~~i-~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRV----EALEEFWDSVLSQTKKL-KSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHH----HHHHHHHHHTGGGCCCB-CCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hhCChhHHHHhhcCCHHHHH----HHHHHHHHHHHhcCCcc-ccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34444666667655666663 35666777 88888874 3 12334 5666677 4678888899999999998
Q ss_pred cccC-CchHHH-HhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCcccc
Q psy11261 89 NIEE-DTPSYH-RRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIP 166 (247)
Q Consensus 89 ~~~~-d~~~y~-~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivP 166 (247)
+.-. . .+. .....+++...+...+....+|.++-.||.+++..+.... . ...++. ++|
T Consensus 90 ~~l~~~--~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~----~--~~~l~~------------ll~ 149 (249)
T 2qk1_A 90 DKLKTP--GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA----S--SGRNED------------MLK 149 (249)
T ss_dssp HHHCTT--TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC----T--TCTTHH------------HHH
T ss_pred Hhcccc--cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc----c--CCcHHH------------HHH
Confidence 6432 2 344 3344566666666666556899999999999998652210 0 001333 667
Q ss_pred ccccccccCCCCCh--HHHHHHHHHHHHccccc--c----cc-chhhhhhhhhccCCCCCCCh--hhHHHHHHHHHH
Q psy11261 167 SLLYNMHHEMTSDG--SQMAETCLRELIGRAAF--G----HV-KGVVGPVLNHLDMHRLWPPK--DFAYQVFRILVF 232 (247)
Q Consensus 167 slL~n~~~~~~~~p--~~~a~~CL~~l~~~a~~--t----ti-r~vl~p~~~~~D~~~~W~~~--~~A~~~~~~~~~ 232 (247)
.++..+.. ++| +.-+-.+|...+..++. . .+ ..++..+...++..+ ++ .-|..|+..++.
T Consensus 150 ~l~~~l~~---k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~---~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 150 DILEHMKH---KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ---PAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHTTC---SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHH
Confidence 76666653 366 34555566666665542 2 25 677777777874442 22 777777775543
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=85.37 E-value=0.93 Score=43.87 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=87.7
Q ss_pred HHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHH-HHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccch--
Q psy11261 65 IQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYD-FFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLAD-- 141 (247)
Q Consensus 65 i~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~-~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~-- 141 (247)
+..++++.+++.+..++..|..++....+ .+..... .+++.+.......+..+|..+++.+..++..........
T Consensus 229 l~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 306 (861)
T 2bpt_A 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYT--FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ 306 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGG--GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33455677888888999998887765332 1223333 555555555555556899999999999887531100000
Q ss_pred -hhcc-------cccccchhhccCCCCCCccccccccccccCCC----C--ChHHHHHHHHHHHHccccccccchhhhhh
Q psy11261 142 -NIWK-------SHHLDKRWISDGGDLPTRTIPSLLYNMHHEMT----S--DGSQMAETCLRELIGRAAFGHVKGVVGPV 207 (247)
Q Consensus 142 -~i~~-------~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~----~--~p~~~a~~CL~~l~~~a~~ttir~vl~p~ 207 (247)
..|. ...+.. ++|.++..|.+.++ + ++..-|..||..++.......+..++..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~------------il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 374 (861)
T 2bpt_A 307 FPQSPLQSYNFALSSIKD------------VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFV 374 (861)
T ss_dssp CTTCSCCCCCHHHHHHHH------------HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHH------------HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 0000 001122 88888777765321 2 35667888998888765544455566556
Q ss_pred hhhccCCCCCCChhhHHHHHHH
Q psy11261 208 LNHLDMHRLWPPKDFAYQVFRI 229 (247)
Q Consensus 208 ~~~~D~~~~W~~~~~A~~~~~~ 229 (247)
...+.+. .|....-|..++..
T Consensus 375 ~~~l~~~-~~~~r~~a~~~l~~ 395 (861)
T 2bpt_A 375 EQNITAD-NWRNREAAVMAFGS 395 (861)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHH
T ss_pred HHHcCCC-ChhHHHHHHHHHHH
Confidence 6666654 48765555555443
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=84.56 E-value=4.9 Score=38.75 Aligned_cols=152 Identities=9% Similarity=0.121 Sum_probs=96.9
Q ss_pred eHHHHHHHHHHhccccchhhhHHHHHH---HHHhcCCc-chhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCc
Q psy11261 40 MSLEAMNQILLSCHAHALNLLQKKLIQ---KLLECHEH-VLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDS 115 (247)
Q Consensus 40 V~l~i~~kLl~~C~~q~l~LFa~~ii~---~lL~s~~~-~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~ 115 (247)
-.++.+..++..+..+ +.-+...++. .++++.+. .++..++..+..++..-++ .+..-+..+++.....-...
T Consensus 575 ~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSS-VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHCGGG-TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhccc
Confidence 4667788888888876 6556664444 44555555 6777777666665544322 34445566777666665444
Q ss_pred chhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCC-CCChHHHHHHHHHHHHcc
Q psy11261 116 DVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEM-TSDGSQMAETCLRELIGR 194 (247)
Q Consensus 116 ~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~-~~~p~~~a~~CL~~l~~~ 194 (247)
...+|.+++.++..++...++ .+. ..++. ++|.++.++.+.+ +.+.+..+-.|+..|+..
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~~-~~~------~~~~~------------l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLEE-DFR------RYSDA------------MMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTGG-GGH------HHHHH------------HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhch-hcc------chHHH------------HHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 447999999999988876643 221 12333 7888887776542 245577888899888886
Q ss_pred cc--ccc-cchhhhhhhhhccC
Q psy11261 195 AA--FGH-VKGVVGPVLNHLDM 213 (247)
Q Consensus 195 a~--~tt-ir~vl~p~~~~~D~ 213 (247)
.. +.. +..++.+++..++.
T Consensus 713 ~~~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 713 IGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp HGGGGHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHHHhc
Confidence 63 222 45677777777764
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.79 E-value=1.8 Score=44.59 Aligned_cols=138 Identities=10% Similarity=0.104 Sum_probs=84.1
Q ss_pred eHHHHHHHHHHhccccchhhhHHHHHHH---HHhcCCc--chhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccC
Q psy11261 40 MSLEAMNQILLSCHAHALNLLQKKLIQK---LLECHEH--VLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHD 114 (247)
Q Consensus 40 V~l~i~~kLl~~C~~q~l~LFa~~ii~~---lL~s~~~--~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~ 114 (247)
-++.++..++..|+.. +.-+...++.. +|+..+. +++..++..|..+....+.. .+..-++.+++.+......
T Consensus 453 ~~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~l~~llp~L~~~l~d 530 (1230)
T 1u6g_C 453 CCFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-HHHhHHHHHHHHHHHHHcc
Confidence 3677888999999886 66566644444 4443333 77888888888776543222 2444445566666655555
Q ss_pred cchhHHhhchhhhhhhHhhccccccchhhcc---cccccchhhccCCCCCCccccccccccccCCCCCh--HHHHHHHHH
Q psy11261 115 SDVELRMAGISGIQGIIRKTVSDDLADNIWK---SHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDG--SQMAETCLR 189 (247)
Q Consensus 115 ~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~---~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p--~~~a~~CL~ 189 (247)
...++|..++.++..++...++.. . .|. ...++. ++|.++..+... +.+| +.-|-.|+.
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~--~-~~~~~~~~~~~~------------ll~~ll~~l~~~-d~~~~vr~~a~~~lg 594 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLD--Q-PSSFDATPYIKD------------LFTCTIKRLKAA-DIDQEVKERAISCMG 594 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSS--S-CCCCCCHHHHHH------------HHHHHHHHHSCS-SSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcc--c-ccccchHHHHHH------------HHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 444788888999999997654410 0 000 011233 788877766432 2344 556778888
Q ss_pred HHHccc
Q psy11261 190 ELIGRA 195 (247)
Q Consensus 190 ~l~~~a 195 (247)
.|+..+
T Consensus 595 ~L~~~~ 600 (1230)
T 1u6g_C 595 QIICNL 600 (1230)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888765
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.80 E-value=1.7 Score=42.89 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=84.5
Q ss_pred HHhcCCcchhhHhHHHHHHhhcccCCchHHH-HhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhccc
Q psy11261 68 LLECHEHVLQILATQSFVKYANIEEDTPSYH-RRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKS 146 (247)
Q Consensus 68 lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~-~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~ 146 (247)
+++..+++.+..++.+|..++.... .+. ...+.+++.+.......++.+|...+..+..++.... ....+ +
T Consensus 223 ~~~d~~~~vr~~a~~~L~~l~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~---~~~~~--~ 294 (852)
T 4fdd_A 223 LAGDEEPEVRKNVCRALVMLLEVRM---DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI---CKDVL--V 294 (852)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHCH---HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT---HHHHH--T
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh---HHHHH--H
Confidence 3456777888899999988776432 232 2335677766666666666889888888877764220 00011 2
Q ss_pred ccccchhhccCCCCCCccccccccccc----------cC---C--------CCChHHHHHHHHHHHHccccccccchhhh
Q psy11261 147 HHLDKRWISDGGDLPTRTIPSLLYNMH----------HE---M--------TSDGSQMAETCLRELIGRAAFGHVKGVVG 205 (247)
Q Consensus 147 ~~~~~~~v~~~~~~~~~ivPslL~n~~----------~~---~--------~~~p~~~a~~CL~~l~~~a~~ttir~vl~ 205 (247)
..+.. ++|.++..|. .+ + .-++...|..||..++.......+..++.
T Consensus 295 ~~~~~------------l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~ 362 (852)
T 4fdd_A 295 RHLPK------------LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 362 (852)
T ss_dssp TTHHH------------HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHH------------HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 23344 7888877773 11 1 11346778889988887654444445555
Q ss_pred hhhhhccCCCCCCChhhHHHHHHH
Q psy11261 206 PVLNHLDMHRLWPPKDFAYQVFRI 229 (247)
Q Consensus 206 p~~~~~D~~~~W~~~~~A~~~~~~ 229 (247)
.+...+.+. .|....-|..++..
T Consensus 363 ~l~~~l~~~-~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 363 LLKELLFHH-EWVVKESGILVLGA 385 (852)
T ss_dssp HHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHH
Confidence 555566544 47766556555554
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.71 E-value=1.7 Score=38.43 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHhcCCcchhhHhHHHHHHhhcccCCc-hHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhc
Q psy11261 66 QKLLECHEHVLQILATQSFVKYANIEEDT-PSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIW 144 (247)
Q Consensus 66 ~~lL~s~~~~l~i~~~~tf~~F~~~~~d~-~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~ 144 (247)
..++++.+++.+..++..|..++....+. ..|... .+++.+........+.+|..++..+..++....+ . ...
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~--~--~~~ 296 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--L--AIE 296 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH--H--HHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH--H--HHh
Confidence 33445677788888888888877653321 122220 4444444444444558888888888777754210 0 000
Q ss_pred ccc-cccchhhccC-CC----CCCccccccccccccCC------CCChHHHHHHHHHHHHccccccccchhhhhhhhhcc
Q psy11261 145 KSH-HLDKRWISDG-GD----LPTRTIPSLLYNMHHEM------TSDGSQMAETCLRELIGRAAFGHVKGVVGPVLNHLD 212 (247)
Q Consensus 145 ~~~-~~~~~~v~~~-~~----~~~~ivPslL~n~~~~~------~~~p~~~a~~CL~~l~~~a~~ttir~vl~p~~~~~D 212 (247)
... .-+..+.... .. ....++|.++..+.+.+ +-++..-|..||..++.......+..++..+..++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~ 376 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 000 0000000000 00 00127787766665432 125678889999999886653334445544555665
Q ss_pred CCCCCCChhhHHHHHHH
Q psy11261 213 MHRLWPPKDFAYQVFRI 229 (247)
Q Consensus 213 ~~~~W~~~~~A~~~~~~ 229 (247)
+ ..|....-|..++..
T Consensus 377 ~-~~~~~r~aal~~l~~ 392 (462)
T 1ibr_B 377 N-PDWRYRDAAVMAFGC 392 (462)
T ss_dssp C-SSHHHHHHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHH
Confidence 4 347666555555554
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.99 E-value=5.8 Score=34.97 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=91.0
Q ss_pred eHHHHHHHHHHhccccchhhhHH--HHHHH---HHhcC-CcchhhHhHHHHHHhhcccCCchHHHHhH--HHHHHHhhhh
Q psy11261 40 MSLEAMNQILLSCHAHALNLLQK--KLIQK---LLECH-EHVLQILATQSFVKYANIEEDTPSYHRRY--DFFISKFSSM 111 (247)
Q Consensus 40 V~l~i~~kLl~~C~~q~l~LFa~--~ii~~---lL~s~-~~~l~i~~~~tf~~F~~~~~d~~~y~~~y--~~~v~~f~~l 111 (247)
-++..+++++..-....+.-... .++.. +|++. +++.+..++..+..++.... ...+.. .+.++.+.++
T Consensus 39 ~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~l 115 (450)
T 2jdq_A 39 SATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS---LQTRIVIQAGAVPIFIEL 115 (450)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH---HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH---HHHHHHHhCCCHHHHHHH
Confidence 45666666665322211222221 23333 44555 78899999988887775432 222221 4688889988
Q ss_pred ccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHH
Q psy11261 112 CHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLREL 191 (247)
Q Consensus 112 a~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l 191 (247)
....+..+|..++.+|..+..... +....+.+ .. ++|.++.-+.+.+..+....|-.||.+|
T Consensus 116 L~~~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~----~~------------~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 116 LSSEFEDVQEQAVWALGNIAGDST--MCRDYVLD----CN------------ILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHH----TT------------CHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHH----CC------------CHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 887777899999999988875321 11111100 01 6777776665322233456777788888
Q ss_pred Hccc----cccccchhhhhhhhhccCCC
Q psy11261 192 IGRA----AFGHVKGVVGPVLNHLDMHR 215 (247)
Q Consensus 192 ~~~a----~~ttir~vl~p~~~~~D~~~ 215 (247)
+... ....+..++.+++..+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 205 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSD 205 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCC
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCC
Confidence 8643 23335778888888887543
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=76.05 E-value=9.7 Score=32.35 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=55.4
Q ss_pred HHhcCCcchhhHhHHHHHHhhcccCCc-hHHHHhH-HHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccch
Q psy11261 68 LLECHEHVLQILATQSFVKYANIEEDT-PSYHRRY-DFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLAD 141 (247)
Q Consensus 68 lL~s~~~~l~i~~~~tf~~F~~~~~d~-~~y~~~y-~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~ 141 (247)
.|++.++..+..+...+..++...... ..+...+ ..+++...++-.+....+|.++..+|..+..-.|+..+..
T Consensus 154 ~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK 229 (249)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 345677888877777777666544332 2566777 7899999888887777999999999999998777755543
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=72.99 E-value=9.7 Score=34.94 Aligned_cols=153 Identities=11% Similarity=0.116 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhccccchhhhHH----HHHHHHHhcCC-cchhhHhHHHHHHhhcccCCchHHHHhHH--HHHHHhhhhcc
Q psy11261 41 SLEAMNQILLSCHAHALNLLQK----KLIQKLLECHE-HVLQILATQSFVKYANIEEDTPSYHRRYD--FFISKFSSMCH 113 (247)
Q Consensus 41 ~l~i~~kLl~~C~~q~l~LFa~----~ii~~lL~s~~-~~l~i~~~~tf~~F~~~~~d~~~y~~~y~--~~v~~f~~la~ 113 (247)
++..+++++...+......++. ..+-.+|.+.+ ++++..++..+...+.. ++.+....- +.|+.+..+..
T Consensus 94 A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CHHHHHHHHhCCcHHHHHHHhc
Confidence 3445555555544222444555 33333455554 78888888888777653 222322222 57888888887
Q ss_pred CcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHHHc
Q psy11261 114 DSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELIG 193 (247)
Q Consensus 114 ~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l~~ 193 (247)
.....+|..++.+|..+.... .+....+- +.+ .+|.++.-+....+.+....|-.||.+|+.
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~-----------~~g-----~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDS--PKCRDLVL-----------ANG-----ALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTC--HHHHHHHH-----------HTT-----CHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhCCC--hhhHHHHH-----------HCC-----cHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 766789998888888886421 11111110 001 677777766433222234566677788876
Q ss_pred ccc---ccccchhhhhhhhhccCC
Q psy11261 194 RAA---FGHVKGVVGPVLNHLDMH 214 (247)
Q Consensus 194 ~a~---~ttir~vl~p~~~~~D~~ 214 (247)
... ...+..++.+++..+.+.
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSN 256 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCC
Confidence 531 222455777777777543
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=71.77 E-value=4.1 Score=37.26 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhc
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKT 134 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~ 134 (247)
.++..+.++.++..+..++..+-.++..-. .++ -+.+++.+.+++..++...|.++.++|..++...
T Consensus 129 ~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~---~~~--~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~ 195 (588)
T 1b3u_A 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVS---SAV--KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL 195 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHGGGHHHHTTTSC---HHH--HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcC---HHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 444455566667777777777766554432 222 3567777878887766789999999998887644
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=69.86 E-value=8.2 Score=35.19 Aligned_cols=136 Identities=17% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhccc
Q psy11261 67 KLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKS 146 (247)
Q Consensus 67 ~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~ 146 (247)
.+|+..+.+.+..++.++-.++..-++. .+ ++.+++....+........|.+.+.++..+....+.+.
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~---~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~-------- 515 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGKE-WA---HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI-------- 515 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHH-HH---HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCch-hH---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--------
Confidence 3455566778888888887776543322 12 46677777766655555899999999998887553321
Q ss_pred ccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHHHccccccccchhhhhhhhhccCCCCCCChhhHHHH
Q psy11261 147 HHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELIGRAAFGHVKGVVGPVLNHLDMHRLWPPKDFAYQV 226 (247)
Q Consensus 147 ~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l~~~a~~ttir~vl~p~~~~~D~~~~W~~~~~A~~~ 226 (247)
..+. ++|.++..+.+. ..+...-+-.||..++.......+...+.|++.-+-+..-|.-...|...
T Consensus 516 -~~~~------------~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~a 581 (588)
T 1b3u_A 516 -TTKH------------MLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581 (588)
T ss_dssp -HHHH------------THHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HHHH------------HHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 1122 778777665432 22335567778888876543222234455555445333334333555554
Q ss_pred HH
Q psy11261 227 FR 228 (247)
Q Consensus 227 ~~ 228 (247)
+.
T Consensus 582 l~ 583 (588)
T 1b3u_A 582 LT 583 (588)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=68.48 E-value=31 Score=33.17 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=85.4
Q ss_pred eHHHHHHHHHHhccccchhhhHHHHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhH
Q psy11261 40 MSLEAMNQILLSCHAHALNLLQKKLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVEL 119 (247)
Q Consensus 40 V~l~i~~kLl~~C~~q~l~LFa~~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~ 119 (247)
.+...+..|...|.++-++.+. ..+...|.+.+...+..++..+-.++..-... .+......+++.+...-......+
T Consensus 347 ~a~~~l~~l~~~~~~~~~~~~l-~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~l~~~l~d~~~~v 424 (876)
T 1qgr_A 347 AAGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHCcHhhHHHHH-HHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHhCCCCHHH
Confidence 3445556666666643112111 33444556677777877877776665432211 233445667777766665555689
Q ss_pred HhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChH--HHHHHHHHHHHcccc-
Q psy11261 120 RMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGS--QMAETCLRELIGRAA- 196 (247)
Q Consensus 120 R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~--~~a~~CL~~l~~~a~- 196 (247)
|.++..+|..++...... .. ....++. ++|.++..+.+ +|. .-|-.||..++..+.
T Consensus 425 r~~a~~~l~~~~~~~~~~-~~----~~~~l~~------------~l~~l~~~l~~----~~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 425 RDTAAWTVGRICELLPEA-AI----NDVYLAP------------LLQCLIEGLSA----EPRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp HHHHHHHHHHHHHHCGGG-TS----STTTHHH------------HHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchh-cc----cHHHHHH------------HHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhhh
Confidence 999999999888754321 00 0223344 78888777753 243 334455666665432
Q ss_pred ----------------ccccchhhhhhhhhccCC
Q psy11261 197 ----------------FGHVKGVVGPVLNHLDMH 214 (247)
Q Consensus 197 ----------------~ttir~vl~p~~~~~D~~ 214 (247)
...+..++..++..++..
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 517 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSC
T ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHhCc
Confidence 012445666666776654
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=67.27 E-value=26 Score=33.19 Aligned_cols=71 Identities=11% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHH---HhcCCcchhhHhHHHHHHhhcccCCchHHHH-hHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhc
Q psy11261 63 KLIQKL---LECHEHVLQILATQSFVKYANIEEDTPSYHR-RYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKT 134 (247)
Q Consensus 63 ~ii~~l---L~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~-~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~ 134 (247)
.++..+ |++.++.++..++.++..+...-..+++..+ -+..+++.+..+.. .+..+|.+||++|..++...
T Consensus 239 ~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 239 SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 455554 4567788888888888887652111112332 23455555555554 44589999999999998753
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=67.18 E-value=7 Score=31.32 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=79.8
Q ss_pred ceeeHHHHHHHHHHhcccc--chhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhh
Q psy11261 37 YVLMSLEAMNQILLSCHAH--ALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSS 110 (247)
Q Consensus 37 ~V~V~l~i~~kLl~~C~~q--~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~ 110 (247)
+..|...+...|-.-|... +...+.. ..+-.+|++.+++++..++.++...+...++....... .+.++.+.+
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ 177 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVK 177 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHH
Confidence 3444444444444444221 1333333 33444566778888888888888777543322122222 567888888
Q ss_pred hccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHH
Q psy11261 111 MCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRE 190 (247)
Q Consensus 111 la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~ 190 (247)
+....+..+|..++.+|..+.... .+....+.+ .+ .+|.+..-+.+. +.+....|-.+|.+
T Consensus 178 ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~-----------~~-----~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 178 LLTSTDSEVQKEAARALANIASGP--TSAIKAIVD-----------AG-----GVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHHHH-----------TT-----HHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHH-----------CC-----CHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 888777789999999998887521 111111100 01 667766666532 22335777888888
Q ss_pred HHccc
Q psy11261 191 LIGRA 195 (247)
Q Consensus 191 l~~~a 195 (247)
|....
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 87655
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=66.47 E-value=45 Score=32.02 Aligned_cols=172 Identities=10% Similarity=-0.021 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccccchhhhHH---HHHHHHHhcC-CcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccC--
Q psy11261 41 SLEAMNQILLSCHAHALNLLQK---KLIQKLLECH-EHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHD-- 114 (247)
Q Consensus 41 ~l~i~~kLl~~C~~q~l~LFa~---~ii~~lL~s~-~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~-- 114 (247)
++.++..++..++.+ ..-|.. .++...|+.. +++.+..++.++...+..-.+ .+....+.+++.+.+.-..
T Consensus 628 a~~~l~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGE-FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--NIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHhCCcc
Confidence 456667777777765 444444 4555556554 788888888888776654321 2334456666666655443
Q ss_pred cchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCC-CCCh---------HHHH
Q psy11261 115 SDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEM-TSDG---------SQMA 184 (247)
Q Consensus 115 ~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~-~~~p---------~~~a 184 (247)
.+..+|.+.+.++..++...+.+ +.. .+.. ++|.++..+.... .+|+ ..-+
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~-~~~------~l~~------------~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~ 765 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGE-FKK------YLEV------------VLNTLQQASQAQVDKSDYDMVDYLNELRESC 765 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGG-GGG------GHHH------------HHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred ccHHhhHHHHHHHHHHHHHhchh-HHH------HHHH------------HHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Confidence 23479999999999998876543 221 2333 6676655443321 1122 2223
Q ss_pred HHHHHHHHccccc---------cccchhhhhhhhhc----cCCCCCCC-hhhHHHHHHHHHHHh
Q psy11261 185 ETCLRELIGRAAF---------GHVKGVVGPVLNHL----DMHRLWPP-KDFAYQVFRILVFSV 234 (247)
Q Consensus 185 ~~CL~~l~~~a~~---------ttir~vl~p~~~~~----D~~~~W~~-~~~A~~~~~~~~~s~ 234 (247)
-.++..++..... ..++..+..++.++ ++...|.. ...|..|+..+....
T Consensus 766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445555443211 24444455555444 44332433 378888888765554
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=65.86 E-value=39 Score=29.52 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=57.5
Q ss_pred eeHHHHHHHHHHhc-cccchhhhHH---HHHHHHHhcC--CcchhhHhHHHHHHhhcccCCc--hHHHHhHHHHHHHhhh
Q psy11261 39 LMSLEAMNQILLSC-HAHALNLLQK---KLIQKLLECH--EHVLQILATQSFVKYANIEEDT--PSYHRRYDFFISKFSS 110 (247)
Q Consensus 39 ~V~l~i~~kLl~~C-~~q~l~LFa~---~ii~~lL~s~--~~~l~i~~~~tf~~F~~~~~d~--~~y~~~y~~~v~~f~~ 110 (247)
..++.++..|...+ .+. +.-+.. ..+..+|+.. +++++..++.++..+...-.+. ..-.+. .+++...+
T Consensus 148 ~~al~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~l~~~l~~ 224 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH--FIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHSCGGG-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchh-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence 35777888888877 443 444555 4444455544 6788888888887754331111 011112 24555555
Q ss_pred hccCcchhHHhhchhhhhhhHhhc
Q psy11261 111 MCHDSDVELRMAGISGIQGIIRKT 134 (247)
Q Consensus 111 la~~~~~~~R~aGLqaL~~~V~~~ 134 (247)
.....+...|.+.+++|..++...
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 555555689999999999988754
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=65.60 E-value=36 Score=34.87 Aligned_cols=168 Identities=8% Similarity=0.071 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHH---hcCCcchhhHhHHHHHHhhcccCCc---h-HHHHhHHHHHHHhhhhcc
Q psy11261 41 SLEAMNQILLSCHAHALNLLQKKLIQKLL---ECHEHVLQILATQSFVKYANIEEDT---P-SYHRRYDFFISKFSSMCH 113 (247)
Q Consensus 41 ~l~i~~kLl~~C~~q~l~LFa~~ii~~lL---~s~~~~l~i~~~~tf~~F~~~~~d~---~-~y~~~y~~~v~~f~~la~ 113 (247)
++.++..+...|++. ....|+..|+ .+.++..+..++..+-.++..-.+. + ........+++.......
T Consensus 68 A~~~L~~l~~~~~~~----~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 68 AVKCLGPLVSKVKEY----QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHHHHHTTSCHH----HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc
Confidence 555666677666553 1124555554 3456667777788777777642221 0 112235677777777665
Q ss_pred C-cchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHHH
Q psy11261 114 D-SDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELI 192 (247)
Q Consensus 114 ~-~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l~ 192 (247)
. .....|..++.+|..++...++ .+. + +++. ++|.++..+.+. ......-|-.||..++
T Consensus 144 ~~~~~~~~~~al~~l~~~~~~~~~-~l~-----~-~~~~------------ll~~l~~~L~~~-~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 144 KQEDVSVQLEALDIMADMLSRQGG-LLV-----N-FHPS------------ILTCLLPQLTSP-RLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCS-SCT-----T-THHH------------HHHHHGGGGGCS-SHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHhHh-HHH-----H-HHHH------------HHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 3 4458999999999999865433 221 1 2333 677777666532 1223566777888888
Q ss_pred ccccccccchhhhhhhhhccCCCCCCChhhHHHHHHHHHH
Q psy11261 193 GRAAFGHVKGVVGPVLNHLDMHRLWPPKDFAYQVFRILVF 232 (247)
Q Consensus 193 ~~a~~ttir~vl~p~~~~~D~~~~W~~~~~A~~~~~~~~~ 232 (247)
...+...+..++..++.++-...-|....-|..++..+..
T Consensus 204 ~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 204 MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 7665444667788888777655434444556666665443
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=63.50 E-value=16 Score=29.56 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=61.1
Q ss_pred HHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH-HHHH---HHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHH
Q psy11261 28 RDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK-KLIQ---KLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDF 103 (247)
Q Consensus 28 kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~-~ii~---~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~ 103 (247)
+.+......-..-++..+++++....+ +...++. .+|. .+|++.+++.+..++..+..++...++....+.. .+
T Consensus 19 ~~L~s~~~~~~~~a~~~L~~~l~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g 96 (252)
T 4db8_A 19 QQLNSDDMQEQLSATRKFSQILSDGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AG 96 (252)
T ss_dssp HHHHSSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCc-hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Confidence 334444443344555666666666344 3666776 4444 4556777888888888887777533222111111 24
Q ss_pred HHHHhhhhccCcchhHHhhchhhhhhhHh
Q psy11261 104 FISKFSSMCHDSDVELRMAGISGIQGIIR 132 (247)
Q Consensus 104 ~v~~f~~la~~~~~~~R~aGLqaL~~~V~ 132 (247)
.++.+..+-...+..+|..++.+|..+..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 67777777776666777777777776654
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=63.38 E-value=10 Score=34.88 Aligned_cols=144 Identities=10% Similarity=0.139 Sum_probs=80.7
Q ss_pred HHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhc
Q psy11261 65 IQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIW 144 (247)
Q Consensus 65 i~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~ 144 (247)
+-.+|.+.+++.+..++.++-.++...++......+ .++++.+..+.......+|.+++.+|..+..... +.....+
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~- 380 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITAGNT-EQIQAVI- 380 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHH-
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHH-
Confidence 333456677777888887777666543221111111 2577778777776666899999999988775221 1111111
Q ss_pred ccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHHHccccc--cccc-----hhhhhhhhhccCCCCC
Q psy11261 145 KSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELIGRAAF--GHVK-----GVVGPVLNHLDMHRLW 217 (247)
Q Consensus 145 ~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l~~~a~~--ttir-----~vl~p~~~~~D~~~~W 217 (247)
+ .. ++|.++.-+... +......|-.+|.+|+..++. .+++ .++.+++..++..+
T Consensus 381 ~----~~------------~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-- 441 (530)
T 1wa5_B 381 D----AN------------LIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-- 441 (530)
T ss_dssp H----TT------------CHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC--
T ss_pred H----CC------------CHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC--
Confidence 0 01 677776666432 222345666777777765322 1222 37888888888652
Q ss_pred CCh--hhHHHHHHHHH
Q psy11261 218 PPK--DFAYQVFRILV 231 (247)
Q Consensus 218 ~~~--~~A~~~~~~~~ 231 (247)
++ .-|..++..++
T Consensus 442 -~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 442 -NRIIEVTLDALENIL 456 (530)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 33 44554554433
No 22
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=60.93 E-value=4 Score=40.18 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=73.0
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH---HHHHHHHhcCCcchhhHhHHHHHHhhccc
Q psy11261 15 LDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK---KLIQKLLECHEHVLQILATQSFVKYANIE 91 (247)
Q Consensus 15 L~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~---~ii~~lL~s~~~~l~i~~~~tf~~F~~~~ 91 (247)
++.+-.+|.+.+..+-|+.|. -++.++..+...|.++ +.-+.+ ..+-.+|+..++..+..++.++-.|+..-
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~----aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKE----SGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHH----HHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 456666676666544444443 3566777888888775 554555 44444555677778888888888888642
Q ss_pred CCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhcc
Q psy11261 92 EDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTV 135 (247)
Q Consensus 92 ~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~ 135 (247)
... .....+..+++.+.+.-.....+.|.++..||..++...+
T Consensus 432 ~~~-~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 432 VSQ-PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHS-CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred ccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 110 0122344666666665555556899999999998887554
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=60.19 E-value=14 Score=29.51 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhc
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKT 134 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~ 134 (247)
..+-.+|++.+++.+..++.++..++...++....... .++++.+.++.+..+..+|..++.+|..+....
T Consensus 173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 173 EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 44445667788889999999888877632222122221 457888888888777799999999999988754
No 24
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=58.86 E-value=57 Score=28.83 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhc--cc----
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKT--VS---- 136 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~--~~---- 136 (247)
.++..||...|+.++..+...++.-..--+ +..-.+.++.+++.+..++.+.++++-.-++++|...+-.. .+
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~-~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRAD-SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 667777877888888877777765444333 33778899999999999999988887777888888777532 00
Q ss_pred ---cccchhhcccccccchhh--ccC--CCCC---CccccccccccccCCCCCh--HHHHHHHHHHHHccc-cccccchh
Q psy11261 137 ---DDLADNIWKSHHLDKRWI--SDG--GDLP---TRTIPSLLYNMHHEMTSDG--SQMAETCLRELIGRA-AFGHVKGV 203 (247)
Q Consensus 137 ---d~l~~~i~~~~~~~~~~v--~~~--~~~~---~~ivPslL~n~~~~~~~~p--~~~a~~CL~~l~~~a-~~ttir~v 203 (247)
+++.+.+ ..+-+.-|. .+. .-.+ ...|-.+++.+- .+.|| +..|-.-|-||++.. +-..+..|
T Consensus 115 Kl~~aL~dli--k~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl--~Skd~~vK~agl~~L~eia~~S~D~~i~~~I 190 (265)
T 3b2a_A 115 KAAKTLVSLL--ESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV--VSPDLYTKVAGFCLFLNMLNSSADSGHLTLI 190 (265)
T ss_dssp HHHHHHHHHT--TSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT
T ss_pred HHHHHHHHHh--cCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHH--hCCChhHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 1111111 000000111 111 0011 111222222222 24667 456666678888877 46667777
Q ss_pred hhhhhhhccCCCCCCCh--hhHHHHHHHHH
Q psy11261 204 VGPVLNHLDMHRLWPPK--DFAYQVFRILV 231 (247)
Q Consensus 204 l~p~~~~~D~~~~W~~~--~~A~~~~~~~~ 231 (247)
++-+=..+.+. +|. .+|...+..++
T Consensus 191 ~~eI~elL~~e---D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 191 LDEIPSLLQND---NEFIVELALDVLEKAL 217 (265)
T ss_dssp TTTHHHHHTCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHH
Confidence 77777677766 555 88887776543
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=57.40 E-value=21 Score=34.20 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=64.4
Q ss_pred hhccCCCchhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH--HHHHHHHhcCCcchhhHhHHHH
Q psy11261 7 YALSSPEKLDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK--KLIQKLLECHEHVLQILATQSF 84 (247)
Q Consensus 7 Ya~s~p~KL~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~--~ii~~lL~s~~~~l~i~~~~tf 84 (247)
|+...|.--+++-++|++=+.+ .-..+..+-.|..++.+.++.-.... .+... +.+..+|++.+++++..|..++
T Consensus 261 l~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~~aV~~ea~~~i~~l~~~~--~l~~~a~~~L~~~L~~~d~~vr~~aL~~L 337 (618)
T 1w63_A 261 LGRNDDDSSEAMNDILAQVATN-TETSKNVGNAILYETVLTIMDIKSES--GLRVLAINILGRFLLNNDKNIRYVALTSL 337 (618)
T ss_dssp HTTTCHHHHHTTHHHHHHHHHT-SCCSSTHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHHHHHTCSSTTTHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 4444444344444555443221 11123344467777777776643321 22222 6666778888999999999888
Q ss_pred HHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhh
Q psy11261 85 VKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRK 133 (247)
Q Consensus 85 ~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~ 133 (247)
..++.... .....|.. .+...-..++..+|...|..|..++..
T Consensus 338 ~~i~~~~p---~~~~~~~~---~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 338 LKTVQTDH---NAVQRHRS---TIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHH---HHHGGGHH---HHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhhCH---HHHHHHHH---HHHHHccCCChhHHHHHHHHHHHHccc
Confidence 87775432 33332221 122222333447887778877777663
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=53.95 E-value=22 Score=32.65 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred HHHHHHHhccccchhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhH--HHHHHHhhhhccCcch
Q psy11261 44 AMNQILLSCHAHALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRY--DFFISKFSSMCHDSDV 117 (247)
Q Consensus 44 i~~kLl~~C~~q~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y--~~~v~~f~~la~~~~~ 117 (247)
++..|...++++ +..+.. ..+-.+|++.+++++..++.++..++......+.+.+.. .+.++.++.+....+.
T Consensus 364 aL~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 442 (530)
T 1wa5_B 364 TISNITAGNTEQ-IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN 442 (530)
T ss_dssp HHHHHTTSCHHH-HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH
T ss_pred HHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence 334443334443 444444 344445677888999999999988876533211233322 3488888888887777
Q ss_pred hHHhhchhhhhhhHhhc
Q psy11261 118 ELRMAGISGIQGIIRKT 134 (247)
Q Consensus 118 ~~R~aGLqaL~~~V~~~ 134 (247)
.+|...+.+|..++...
T Consensus 443 ~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 443 RIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988744
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=52.92 E-value=17 Score=28.52 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhH
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGII 131 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V 131 (247)
..+-.+|++.+++.+..++.++..++...++...... -.+.++...++....+..+|.....+|..+.
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3334455677888888888888887764332212221 2357788888887666688888888877654
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=52.85 E-value=26 Score=30.75 Aligned_cols=94 Identities=4% Similarity=0.063 Sum_probs=64.0
Q ss_pred eeHHHHHHHHHHhcccc--chhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhc
Q psy11261 39 LMSLEAMNQILLSCHAH--ALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMC 112 (247)
Q Consensus 39 ~V~l~i~~kLl~~C~~q--~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la 112 (247)
.|.-.+..+|-.-|+.. ....|.. ..+-.+|++.++.++..+|-.+-.++....+...+... .++|+.++.+-
T Consensus 140 ~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL 218 (296)
T 1xqr_A 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALV 218 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHH
Confidence 33444555555555432 1335665 55566778889999999999888877654333233333 47889999988
Q ss_pred cCcchhHHhhchhhhhhhHhh
Q psy11261 113 HDSDVELRMAGISGIQGIIRK 133 (247)
Q Consensus 113 ~~~~~~~R~aGLqaL~~~V~~ 133 (247)
...+..+|...+.||..++..
T Consensus 219 ~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 219 RTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCChhHHHHHHHHHHHHHhC
Confidence 777778999999999998864
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=49.33 E-value=24 Score=27.60 Aligned_cols=137 Identities=9% Similarity=0.031 Sum_probs=79.6
Q ss_pred ceeeHHHHHHHHHHhcccc--chhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhh
Q psy11261 37 YVLMSLEAMNQILLSCHAH--ALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSS 110 (247)
Q Consensus 37 ~V~V~l~i~~kLl~~C~~q--~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~ 110 (247)
+..|...+...|-.-|... +...+.. ..+-.+|++.+++++..++.++-.++...++..... .-.+.++.+.+
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ 145 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQ 145 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH-HHcCcHHHHHH
Confidence 4455555555555555321 2344444 455556777888899889888877775332211111 12457888888
Q ss_pred hccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHH
Q psy11261 111 MCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRE 190 (247)
Q Consensus 111 la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~ 190 (247)
+....+..+|..++.+|..++....+ ....+.+ .+ .+|.+..-+.+ ++.+....|-.+|++
T Consensus 146 ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~~~-----------~g-----~i~~L~~ll~~-~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 146 LLSSPNEQILQEALWALSNIASGGNE--QKQAVKE-----------AG-----ALEKLEQLQSH-ENEKIQKEAQEALEK 206 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHH--HHHHHHH-----------TT-----HHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCcH--HHHHHHH-----------CC-----CHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 88777678999999999998864211 1111100 01 56666655542 222335677777777
Q ss_pred HHc
Q psy11261 191 LIG 193 (247)
Q Consensus 191 l~~ 193 (247)
|+.
T Consensus 207 l~~ 209 (210)
T 4db6_A 207 LQS 209 (210)
T ss_dssp HCC
T ss_pred Hhc
Confidence 753
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.22 E-value=23 Score=31.08 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=57.0
Q ss_pred HHHHHHHhccccchhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhH--HHHHHHhhhhccCcch
Q psy11261 44 AMNQILLSCHAHALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRY--DFFISKFSSMCHDSDV 117 (247)
Q Consensus 44 i~~kLl~~C~~q~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y--~~~v~~f~~la~~~~~ 117 (247)
++..|...+.++ ...+.. ..+-.+|++.+++++..++.++..++.... +...+.+ .++++.+.++....+.
T Consensus 299 ~L~~l~~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~ 375 (450)
T 2jdq_A 299 TISNITAGNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS--AEQIKYLVELGCIKPLCDLLTVMDS 375 (450)
T ss_dssp HHHHHTTSCHHH-HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHTCHHHHHHGGGSSCH
T ss_pred HHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 333443334443 444443 334445667888999999999888876422 1222222 3588888888887767
Q ss_pred hHHhhchhhhhhhHhhc
Q psy11261 118 ELRMAGISGIQGIIRKT 134 (247)
Q Consensus 118 ~~R~aGLqaL~~~V~~~ 134 (247)
.+|..++.+|..++...
T Consensus 376 ~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 376 KIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998743
No 31
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=48.19 E-value=54 Score=27.54 Aligned_cols=162 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred CchhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhh------hHH--HHHHHHHhcCCcchhhHhHHHH
Q psy11261 13 EKLDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNL------LQK--KLIQKLLECHEHVLQILATQSF 84 (247)
Q Consensus 13 ~KL~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~L------Fa~--~ii~~lL~s~~~~l~i~~~~tf 84 (247)
+||| |++|+..--|+.|.- .++-+.+++...+.. .+- |.. ..+...+...|...+..|++++
T Consensus 10 sklp-----l~e~l~sk~WK~R~e----ale~l~~~~~~~~~~-~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l 79 (278)
T 4ffb_C 10 TTLP-----LEERLTYKLWKARLE----AYKELNQLFRNSVGD-ISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVAL 79 (278)
T ss_dssp -CCC-----HHHHTTCSSHHHHHH----HHHHHHHHHHTC-----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hcCC-----HHHhcccCcHHHHHH----HHHHHHHHHhhCccc-ccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q ss_pred HHhhcccCCc----hHHHHhHHHHHHHhhhhccCcch-hHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCC
Q psy11261 85 VKYANIEEDT----PSYHRRYDFFISKFSSMCHDSDV-ELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGD 159 (247)
Q Consensus 85 ~~F~~~~~d~----~~y~~~y~~~v~~f~~la~~~~~-~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~ 159 (247)
..|+..-... .........+++...+=+-.+.. ++|..++.++..++......+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-------------------- 139 (278)
T 4ffb_C 80 NSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-------------------- 139 (278)
T ss_dssp HHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH--------------------
T ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH--------------------
Q ss_pred CCCccccccccccccCCCCCh--HHHHHHHHHHHHcc--ccccccchhhhhhhhhc
Q psy11261 160 LPTRTIPSLLYNMHHEMTSDG--SQMAETCLRELIGR--AAFGHVKGVVGPVLNHL 211 (247)
Q Consensus 160 ~~~~ivPslL~n~~~~~~~~p--~~~a~~CL~~l~~~--a~~ttir~vl~p~~~~~ 211 (247)
++..++.-+.. +|| ..-+-.+|.+++.. ....+.+..+.+++..+
T Consensus 140 ----~~e~l~~~l~~---Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l 188 (278)
T 4ffb_C 140 ----SVELVIPFFEK---KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHV 188 (278)
T ss_dssp ----HHHHHGGGGGC---SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGH
T ss_pred ----HHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=45.44 E-value=20 Score=28.98 Aligned_cols=94 Identities=7% Similarity=0.032 Sum_probs=56.4
Q ss_pred ceeeHHHHHHHHHHhcccc--chhhhHH----HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhh
Q psy11261 37 YVLMSLEAMNQILLSCHAH--ALNLLQK----KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSS 110 (247)
Q Consensus 37 ~V~V~l~i~~kLl~~C~~q--~l~LFa~----~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~ 110 (247)
+..|...+...|-.-|... +...+.. ..+-.+|.+.+++++..++.++..++...++...... -.+.++.+..
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ 229 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQ 229 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHH
Confidence 4444445555555444421 1344444 4444556677888888899888888753332212221 2357788888
Q ss_pred hccCcchhHHhhchhhhhhhH
Q psy11261 111 MCHDSDVELRMAGISGIQGII 131 (247)
Q Consensus 111 la~~~~~~~R~aGLqaL~~~V 131 (247)
+....+..+|..+..+|..+.
T Consensus 230 ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 230 LQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TTTCSSSHHHHTHHHHHHTTC
T ss_pred HhCCCCHHHHHHHHHHHHHHh
Confidence 887766688888887777654
No 33
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=44.34 E-value=13 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHH
Q psy11261 18 IGDYLYETASRDI 30 (247)
Q Consensus 18 Ig~yLekR~~kdl 30 (247)
+++|||+|.++|-
T Consensus 2 ~SkyLe~~aakdF 14 (31)
T 3c5t_B 2 LSKQMEEEAVRLF 14 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999985
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=42.04 E-value=49 Score=30.62 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccccchhhhHH-HHHHH---HH-hcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCc
Q psy11261 41 SLEAMNQILLSCHAHALNLLQK-KLIQK---LL-ECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDS 115 (247)
Q Consensus 41 ~l~i~~kLl~~C~~q~l~LFa~-~ii~~---lL-~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~ 115 (247)
++..+++|+..-+...+..++. .+|.. +| .+.+++++..|+-.+...+....+- +-.---.+.|+.+..+....
T Consensus 96 a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-~~~vv~~Gaip~Lv~LL~s~ 174 (529)
T 3tpo_A 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-TKAVVDGGAIPAFISLLASP 174 (529)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHcCC
Confidence 4555667764433321223444 33333 34 4566788888888777766543221 11111235677787777766
Q ss_pred chhHHhhchhhhhhh
Q psy11261 116 DVELRMAGISGIQGI 130 (247)
Q Consensus 116 ~~~~R~aGLqaL~~~ 130 (247)
...+|...+.||..+
T Consensus 175 ~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 175 HAHISEQAVWALGNI 189 (529)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555444
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=34.26 E-value=50 Score=30.04 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhH--HHHHHHhhhhccCcchhHHhhchhhhhhhHhhc
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANIEEDTPSYHRRY--DFFISKFSSMCHDSDVELRMAGISGIQGIIRKT 134 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y--~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~ 134 (247)
..+-.+|++.+++++..++.++..++...+ +.....+ .+.++.++.+....+..++...+.+|..++...
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGS--HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 444456677888999999998888876522 2232222 367888888888777799999999999998744
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=34.14 E-value=55 Score=30.23 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred HHHHHhcCCcchhhHhHHHHHHhhcccCCc-hHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhh
Q psy11261 65 IQKLLECHEHVLQILATQSFVKYANIEEDT-PSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRK 133 (247)
Q Consensus 65 i~~lL~s~~~~l~i~~~~tf~~F~~~~~d~-~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~ 133 (247)
+-.+|.+.+++.+..|+-++..++...+.. ..|.-+ .+.|+.++.|-...+..++...|.||..+...
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 334567888999999998887777543322 112221 35788899998887789999999999988763
No 37
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=32.26 E-value=88 Score=24.60 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=53.9
Q ss_pred chhhhhccCCCchhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH---HHHHHHHhcCCcchhhH
Q psy11261 3 KLTFYALSSPEKLDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK---KLIQKLLECHEHVLQIL 79 (247)
Q Consensus 3 kL~yYa~s~p~KL~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~---~ii~~lL~s~~~~l~i~ 79 (247)
.|+-+|..|...=+.|..-+++++.+---.++. -.|=+++.++..|+.+=...|+. .+.....+..+++.+.-
T Consensus 29 ~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL----~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k 104 (144)
T 1sz9_A 29 TLTKLAEENISCAQYFVDAIESRIEKCMPKQKL----YAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTK 104 (144)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 355666666666666666666666542222222 23445566666666553345555 33333344445555555
Q ss_pred hHHHHHHhhcc-----cCCchHHHHhHHHHHHHhhhhc
Q psy11261 80 ATQSFVKYANI-----EEDTPSYHRRYDFFISKFSSMC 112 (247)
Q Consensus 80 ~~~tf~~F~~~-----~~d~~~y~~~y~~~v~~f~~la 112 (247)
-...|-.|... ..=.+++.+.++.++.+-..+|
T Consensus 105 ~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~~~~ 142 (144)
T 1sz9_A 105 LINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKASAAA 142 (144)
T ss_dssp HHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 55555555433 2222456666666665544443
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=31.74 E-value=52 Score=33.37 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCcchhhHhHHHHHHhhcc-cCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccch
Q psy11261 63 KLIQKLLECHEHVLQILATQSFVKYANI-EEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLAD 141 (247)
Q Consensus 63 ~ii~~lL~s~~~~l~i~~~~tf~~F~~~-~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~ 141 (247)
..+-.||++.+.+.+..|+.++-..+.. .+.......+ .++|+.+..|....+..+|..++.+|..++.. +++...
T Consensus 668 ~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~--s~e~~~ 744 (810)
T 3now_A 668 KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMINA--GEEIAK 744 (810)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC--CHHHHH
Confidence 4444566788888898888877766552 2222223332 57888999999988789999999999998873 222211
Q ss_pred hhcccccccchhhccCCCCCCccccccccccccCCCCCh--HHHHHHHHHHHHcc
Q psy11261 142 NIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDG--SQMAETCLRELIGR 194 (247)
Q Consensus 142 ~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p--~~~a~~CL~~l~~~ 194 (247)
.+-+.+ .+|.+..-+...+++++ ...|..||.++++.
T Consensus 745 -----------~l~e~G-----~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 745 -----------KLFETD-----IMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp -----------HHHTST-----HHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHCC-----CHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 122222 66766655555444555 46788899888863
No 39
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=30.12 E-value=76 Score=28.89 Aligned_cols=126 Identities=8% Similarity=0.059 Sum_probs=78.8
Q ss_pred HHHhcCCcchhhHhHHHHHHhhcccCCchHHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhccc
Q psy11261 67 KLLECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKS 146 (247)
Q Consensus 67 ~lL~s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~ 146 (247)
.+|.+.+++.+..|+.++..++...++...-+.. .+.|+.+.++-...+...+..+..+|..+... +++....|
T Consensus 9 ~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~i--- 82 (457)
T 1xm9_A 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLET--- 82 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHH---
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHH---
Confidence 4677889999999999999988655443223332 45678888887776667888888888877752 12211111
Q ss_pred ccccchhhccCCCCCCccccccccccccCCCCChHHHHHHHHHHHHcccccc--ccchhhhhhhhhc
Q psy11261 147 HHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELIGRAAFG--HVKGVVGPVLNHL 211 (247)
Q Consensus 147 ~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~~a~~CL~~l~~~a~~t--tir~vl~p~~~~~ 211 (247)
-+.+ .||.+..-+...++.+....|-.||.+|+...+.. =++.++.+++..+
T Consensus 83 --------~~~G-----~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 83 --------RRQN-----GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp --------HHTT-----CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred --------HHcC-----CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 1111 56777776653333344667777888888753211 1235667777777
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=29.88 E-value=60 Score=29.92 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=49.0
Q ss_pred HHHHHhcCCcchhhHhHHHHHHhhcccCCch-HHHHhHHHHHHHhhhhccCcchhHHhhchhhhhhhHhh
Q psy11261 65 IQKLLECHEHVLQILATQSFVKYANIEEDTP-SYHRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRK 133 (247)
Q Consensus 65 i~~lL~s~~~~l~i~~~~tf~~F~~~~~d~~-~y~~~y~~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~ 133 (247)
+-.+|++.+++.+..++-++..++...+... .|.-+ .+.|+.++++-...+..++...|.||..+...
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999988887776433221 12211 36788888888887779999999999998864
No 41
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=27.74 E-value=2.7e+02 Score=23.35 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccc--cccccch---hhhhhhhhccCC---CCCCCh--hhHHHHHH
Q psy11261 181 SQMAETCLRELIGRA--AFGHVKG---VVGPVLNHLDMH---RLWPPK--DFAYQVFR 228 (247)
Q Consensus 181 ~~~a~~CL~~l~~~a--~~ttir~---vl~p~~~~~D~~---~~W~~~--~~A~~~~~ 228 (247)
.+=|-.||++|.... ....||. .+++++.|++.. +..+.+ +-|++++.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 345899999998733 3555653 689999999873 556665 66776665
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.75 E-value=1.2e+02 Score=27.92 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=47.6
Q ss_pred eHHHHHHHHHHhccccchhhhHH-HHHHH---HHh-cCCcchhhHhHHHHHHhhcccCCchHHHHhH--HHHHHHhhhhc
Q psy11261 40 MSLEAMNQILLSCHAHALNLLQK-KLIQK---LLE-CHEHVLQILATQSFVKYANIEEDTPSYHRRY--DFFISKFSSMC 112 (247)
Q Consensus 40 V~l~i~~kLl~~C~~q~l~LFa~-~ii~~---lL~-s~~~~l~i~~~~tf~~F~~~~~d~~~y~~~y--~~~v~~f~~la 112 (247)
-++..+|||+..-+...+...+. .+|-. +|. +.++++|..|+-.+...++..+ ...+.. .+.|+.+..+-
T Consensus 76 ~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~---e~~~~vv~~GaIp~Lv~lL 152 (510)
T 3ul1_B 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS---EQTKAVVDGGAIPAFISLL 152 (510)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCCHHHHHHHH
Confidence 35556677775433221223333 33333 343 4567888888887776664322 222221 24677777777
Q ss_pred cCcchhHHhhchhhhhhhH
Q psy11261 113 HDSDVELRMAGISGIQGII 131 (247)
Q Consensus 113 ~~~~~~~R~aGLqaL~~~V 131 (247)
.+....+|..++.||..+.
T Consensus 153 ~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 153 ASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 7665555555555555443
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=24.57 E-value=4.5e+02 Score=24.77 Aligned_cols=84 Identities=10% Similarity=0.218 Sum_probs=49.7
Q ss_pred HHHHHhhhhccCcchhHHhhchhhhhhhHhhccccccchhhcccccccchhhccCCCCCCccccccccccccCCCCChHH
Q psy11261 103 FFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQ 182 (247)
Q Consensus 103 ~~v~~f~~la~~~~~~~R~aGLqaL~~~V~~~~~d~l~~~i~~~~~~~~~~v~~~~~~~~~ivPslL~n~~~~~~~~p~~ 182 (247)
..+..+..+....+..+|.++|.+|..++....+ .+. .+. +.++.-+. +++..
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-~~~------~~~----------------~~i~~~l~----d~d~~ 365 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-AVQ------RHR----------------STIVDCLK----DLDVS 365 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-HHG------GGH----------------HHHHHGGG----SSCHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-HHH------HHH----------------HHHHHHcc----CCChh
Confidence 3555666666555668999999999999875311 111 111 22222222 12334
Q ss_pred HHHHHHHHHHccccccccchhhhhhhhhccC
Q psy11261 183 MAETCLRELIGRAAFGHVKGVVGPVLNHLDM 213 (247)
Q Consensus 183 ~a~~CL~~l~~~a~~ttir~vl~p~~~~~D~ 213 (247)
.-...|.-|.+.++..++..+++.+..|+..
T Consensus 366 Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~ 396 (618)
T 1w63_A 366 IKRRAMELSFALVNGNNIRGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHh
Confidence 4445555555556666678888888888875
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.79 E-value=20 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.3
Q ss_pred CCCchhhhHHHHHHHHHHHHhhc
Q psy11261 11 SPEKLDRIGDYLYETASRDISRK 33 (247)
Q Consensus 11 ~p~KL~KIg~yLekR~~kdl~r~ 33 (247)
-|.|-+||++++ .|..+|++++
T Consensus 30 t~~RW~~IA~~l-gRt~~eV~~~ 51 (72)
T 2cqq_A 30 TPGRWEKIAHEL-GRSVTDVTTK 51 (72)
T ss_dssp CTTHHHHHHHHH-TSCHHHHHHH
T ss_pred CCcHHHHHHHHh-CCCHHHHHHH
Confidence 378999999999 8999999875
No 45
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.58 E-value=1.4e+02 Score=22.40 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=27.8
Q ss_pred hhhhhccCCCchhhhHHHHHHHHHHHHhhcCCCceeeHHHHHHHHHHhccccchhhhHH
Q psy11261 4 LTFYALSSPEKLDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQK 62 (247)
Q Consensus 4 L~yYa~s~p~KL~KIg~yLekR~~kdl~r~r~g~V~V~l~i~~kLl~~C~~q~l~LFa~ 62 (247)
+.-||..|+..=+.|...+++++.+.--.+|.+. |=+++.++..|+..+-+.|.+
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~----LYL~ndIl~ns~~~~~~~f~~ 81 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNL----FYLANDVIQNCKRKNAIIFRE 81 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHH----HHHHHHHHHHTTTTTCTHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHH----HHHHHHHHHHhcccChHHHHH
Confidence 4445555666666666666666544322233222 234455566665543445555
Done!