RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11261
(247 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 2e-06
Identities = 50/288 (17%), Positives = 90/288 (31%), Gaps = 85/288 (29%)
Query: 10 SSPEKLDRIGDYLYETASRDISRKRTQY--VL-MSLEAMNQILLS---CHAHALNLLQ-- 61
++P +L +G +L +S K Q+ VL + L L HA A LLQ
Sbjct: 55 TTPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 62 -------KKLIQ-----------KLLECHEHVLQILATQSFVK-YA------NIEEDTPS 96
K+LI+ + L + + A N ++
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---- 168
Query: 97 Y-------HRRYDFFISKFSSMCHDSDVELRMAGISGIQGIIRKTVSDDLADNIWKSHHL 149
Y ++ Y + I + + + L + L
Sbjct: 169 YFEELRDLYQTYHVLVGDL---------------IKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 150 D-KRWISDGGDLPTR----TIP-SL----LYNMHHEMT---SDGSQMAETCLRELIGRAA 196
+ W+ + + P + +IP S + + H + G E LR + + A
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYL-KGA 270
Query: 197 FGHVKGVVGPVLNHLDMHRLWPPKDF---AYQVFRILVFS-VQSQYSY 240
GH +G+V V + W F + +L F V+ +Y
Sbjct: 271 TGHSQGLVTAVA--IAETDSWE--SFFVSVRKAITVLFFIGVRCYEAY 314
Score = 35.0 bits (80), Expect = 0.022
Identities = 45/277 (16%), Positives = 85/277 (30%), Gaps = 93/277 (33%)
Query: 9 LSSPEKL-DRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQ-KKLIQ 66
L +P D+ DYL S IS L+ + + +++ + + ++
Sbjct: 219 LENPSNTPDK--DYL---LSIPIS-----CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 67 KLLECHEHVL--QILAT----QSFVKYANIEEDTPSYHRRYDFFI-----------SKFS 109
+ ++ +A +SF + ++ + FFI S
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESF--FVSVRKAI-----TVLFFIGVRCYEAYPNTSLPP 321
Query: 110 SMCHDSDVELR------MAGISG-----IQGIIRKTVSDDLADNIWKSHHLDK-RWIS-- 155
S+ DS +E M IS +Q + KT N HL + +
Sbjct: 322 SILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNKT-------N----SHLPAGKQVEIS 369
Query: 156 --DGGDLPTRTI----PSLLYNMHHEM-----TSDGSQ----MAETCLRELIGRAAFG-- 198
+G + P LY ++ + S Q +E R+L F
Sbjct: 370 LVNG---AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPV 423
Query: 199 ----H---VKGVVGPVLNHLDMHRL-WPPKDFAYQVF 227
H + + L + + + KD V+
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Score = 29.2 bits (65), Expect = 1.5
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 16 DRIGDYLYETASRDISR---KRTQYVLMSLEAMN------QILLSCHAHALNLLQKKL-- 64
R+ + A + + KRT +++ E +N Q + + AL+ + L
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLV---EIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 65 --IQKL 68
+QK+
Sbjct: 1872 IKLQKI 1877
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.048
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 61 QKKLIQKLLECHEHVLQILATQS----FVKYANIE 91
+K+ ++KL + L++ A S +K A +E
Sbjct: 18 EKQALKKL----QASLKLYADDSAPALAIK-ATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.31
Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 62/207 (29%)
Query: 12 PEK-LDRIGDYLYETASRDISRKRTQYVLMSLEAMNQILLSCHAHALNLLQKKLIQKLLE 70
P L I + ++ + K +Y SL + ++ L K ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 71 CHEHVLQILATQSFVKYANIEEDTP-----------SYH-------RRYDFFISKFSSMC 112
H I+ + K + ++ P +H R F F
Sbjct: 445 LHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---- 497
Query: 113 HDSDVELRMAGISGIQGIIRKT---------VSDDLAD-NIWKSHHLDKRWISDGGDLPT 162
++ R ++ IR + + L +K + I D
Sbjct: 498 ----LDFRF-----LEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDNDPKYE 542
Query: 163 RTIPSLLYNMHHEMTSDGSQMAETCLR 189
R + ++L + ++ E +
Sbjct: 543 RLVNAILDFLP--------KIEENLIC 561
Score = 30.6 bits (68), Expect = 0.54
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 44/160 (27%)
Query: 7 YALSSPEKLDRIGDYLYETASRDISRKRTQYVLMSLEAMN----QILLSCHAHALNLLQK 62
Y +S + ++ L E + + VL ++ + + AL++
Sbjct: 129 YNVSRLQPYLKLRQALLEL-------RPAKNVL--IDGVLGSGKTWV------ALDVCLS 173
Query: 63 KLIQKLL----------ECHEHVLQILATQSFVKYANIEEDTPSYHRRYDFFISKFSSMC 112
+Q + C+ + Q I+ P++ R D S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQID---PNWTSRSDH-SSNIKLRI 227
Query: 113 HDSDVELRMAGISGIQGIIRKTVSDDLA--DNIWKSHHLD 150
H ELR + K + L N+ + +
Sbjct: 228 HSIQAELRRL-------LKSKPYENCLLVLLNVQNAKAWN 260
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,886,234
Number of extensions: 229195
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 15
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.9 bits)