RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11261
         (247 letters)



>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4,
           SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 7/61 (11%), Positives = 14/61 (22%)

Query: 134 TVSDDLADNIWKSHHLDKRWISDGGDLPTRTIPSLLYNMHHEMTSDGSQMAETCLRELIG 193
           +          +    +  +  D  D      P +   + H          E  L   + 
Sbjct: 50  SFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLI 109

Query: 194 R 194
           R
Sbjct: 110 R 110


>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
           {Bacillus halodurans [TaxId: 86665]}
          Length = 212

 Score = 25.1 bits (54), Expect = 7.5
 Identities = 6/33 (18%), Positives = 17/33 (51%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQYVLMSLEAM 45
           EKL ++ D +     + ++++R  ++   +E  
Sbjct: 174 EKLFKLKDLMNTETGKQLAKERHVFMEQFIERF 206


>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 216

 Score = 25.0 bits (54), Expect = 8.0
 Identities = 7/33 (21%), Positives = 20/33 (60%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQYVLMSLEAM 45
           EKL ++ D ++   ++ ++ +R Q+++  L+  
Sbjct: 176 EKLFKLKDLMHTPTAKKLAEERHQFMIQYLKQF 208


>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 215

 Score = 25.0 bits (54), Expect = 9.3
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQYVLMSLEAM 45
           EKL ++   +    ++ ++  RT  +   ++  
Sbjct: 176 EKLFKLAALMNTDTAKALAAHRTAVMHEFVDQF 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 935,336
Number of extensions: 42106
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 12
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)