BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11263
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila
melanogaster GN=TfIIA-L PE=1 SV=2
Length = 366
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/64 (78%), Positives = 59/64 (92%), Gaps = 1/64 (1%)
Query: 18 PLNSSDDVSEEDPA-LFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANG 76
PLNS DDV++ED A +FDTDN++VCQYDKITRSRNKWKFYLKDGIMN+ GKD+VF K+NG
Sbjct: 303 PLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNG 362
Query: 77 DADW 80
DA+W
Sbjct: 363 DAEW 366
>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii
GN=GTF2A1 PE=2 SV=1
Length = 376
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 14 IEDEPLNSSDDVS-EEDPALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFL 72
+E+EPLNS DDVS EE LFDT+N+VVCQYDKI RS+NKWKF+LKDGIMNLNG+D++F
Sbjct: 309 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFS 368
Query: 73 KANGDADW 80
KA GDA+W
Sbjct: 369 KAIGDAEW 376
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens
GN=GTF2A1 PE=1 SV=1
Length = 376
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 14 IEDEPLNSSDDVS-EEDPALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFL 72
+E+EPLNS DDVS EE LFDT+N+VVCQYDKI RS+NKWKF+LKDGIMNLNG+D++F
Sbjct: 309 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFS 368
Query: 73 KANGDADW 80
KA GDA+W
Sbjct: 369 KAIGDAEW 376
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus
GN=Gtf2a1 PE=2 SV=1
Length = 377
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 14 IEDEPLNSSDDVS-EEDPALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFL 72
+E+EPLNS DDVS EE LFDT+N+VVCQYDKI RS+NKWKF+LKDGIMNLNG+D++F
Sbjct: 310 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFS 369
Query: 73 KANGDADW 80
KA GDA+W
Sbjct: 370 KAIGDAEW 377
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus
GN=Gtf2a1 PE=2 SV=2
Length = 378
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 14 IEDEPLNSSDDVS-EEDPALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFL 72
+E+EPLNS DDVS EE LFDT+N+VVCQYDKI RS+NKWKF+LKDGIMNLNG+D++F
Sbjct: 311 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFS 370
Query: 73 KANGDADW 80
KA GDA+W
Sbjct: 371 KAIGDAEW 378
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2
SV=2
Length = 478
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/68 (70%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 14 IEDEPLNSSDDVSEED-PALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFL 72
+E++PLNS DDVSE+D P LFDTDN++VCQYDKI RS+NKWKFYLKDG+M G+D+VF
Sbjct: 411 VEEDPLNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFA 470
Query: 73 KANGDADW 80
KA GDA+W
Sbjct: 471 KAIGDAEW 478
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2
SV=2
Length = 468
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 15 EDEPLNSSDDVSEED-PALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLK 73
E++PLNS DDVSE+D P LFDT+N++VCQYDKI RS+N+WKFYLKDG+M G+D+VF K
Sbjct: 402 EEDPLNSGDDVSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVFAK 461
Query: 74 ANGDADW 80
A G+A+W
Sbjct: 462 AIGEAEW 468
>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa1 PE=1 SV=1
Length = 369
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 38 IVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
IV+C YDK+ +NKWK +DG++ +NGKD++F KANG+ +W
Sbjct: 326 IVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEFEW 368
>sp|Q54G80|TF2AA_DICDI Transcription initiation factor IIA subunit 1 OS=Dictyostelium
discoideum GN=gtf2a1 PE=3 SV=1
Length = 310
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 36 DNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
++ V+CQY+K++R +NK K KDGIM+LNGKD +F KANG+ W
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEMIW 309
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TOA1 PE=1
SV=1
Length = 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 34/45 (75%)
Query: 36 DNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
+N+++C YDK+TR++ +WK LKDG++ +N D+ F KA +A+W
Sbjct: 241 ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285
>sp|Q8SW23|TOA1_ENCCU Transcription initiation factor IIA large subunit
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TOA1 PE=1
SV=1
Length = 157
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 35 TDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
T N +VC Y K+ S+ KWK K G +++ DFVF A G+ +W
Sbjct: 112 TGNCMVCLYVKVNMSKGKWKCTFKQGFISIGNIDFVFNSAQGELEW 157
>sp|A7Z4E1|MURE_BACA2 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=murE PE=3 SV=1
Length = 490
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 5 PTLAQVVCGIEDEPLNSSDDVSEEDP--ALFDTDNIVVCQYDKITRSRNKWKFYLKDGIM 62
P +A++ I DEP+ +SD+ EDP L D + V Y +R + F+ I
Sbjct: 390 PKMAEIAVRIADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFF---AIA 446
Query: 63 NLNGKDFVFLKANG 76
N D V + G
Sbjct: 447 NAKKGDVVLIAGKG 460
>sp|P0C1Y0|BGAL_LACDE Beta-galactosidase OS=Lactobacillus delbrueckii subsp. bulgaricus
GN=lacZ PE=1 SV=2
Length = 1007
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 55 FYLKDGIMNLNGKDFVFLKAN 75
F LKDGIM LNG+ VF AN
Sbjct: 330 FELKDGIMYLNGQRIVFKGAN 350
>sp|Q1G9Z4|BGAL_LACDA Beta-galactosidase OS=Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC 11842 / DSM 20081) GN=lacZ PE=3 SV=3
Length = 1008
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 55 FYLKDGIMNLNGKDFVFLKAN 75
F LKDGIM LNG+ VF AN
Sbjct: 330 FELKDGIMYLNGQRIVFKGAN 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,289,250
Number of Sequences: 539616
Number of extensions: 1157228
Number of successful extensions: 2669
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2647
Number of HSP's gapped (non-prelim): 18
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)