Query psy11263
Match_columns 80
No_of_seqs 100 out of 149
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nvp_C Transcription initiatio 100.0 6.3E-44 2.2E-48 230.6 7.6 70 11-80 6-76 (76)
2 1nh2_C Transcription initiatio 100.0 1.6E-41 5.4E-46 220.8 7.5 69 12-80 4-78 (79)
3 1rm1_C Transcription initiatio 100.0 6.9E-36 2.4E-40 228.9 7.2 68 13-80 212-285 (286)
4 1e0n_A Hypothetical protein; Y 74.0 2.2 7.5E-05 21.6 2.0 20 61-80 5-24 (27)
5 1e0l_A Formin binding protein; 71.3 1.8 6.3E-05 22.9 1.4 16 65-80 15-30 (37)
6 2ysi_A Transcription elongatio 70.0 2.1 7E-05 23.3 1.5 26 50-80 9-34 (40)
7 1ywi_A Formin-binding protein 69.8 1.8 6.2E-05 23.6 1.2 26 50-80 11-36 (41)
8 2jx8_A Hpcif1, phosphorylated 62.3 3.8 0.00013 23.4 1.6 16 65-80 23-38 (52)
9 2jxw_A WW domain-binding prote 59.7 9.2 0.00031 22.6 3.1 27 49-80 3-29 (75)
10 2dk1_A WW domain-binding prote 56.4 4.5 0.00015 23.1 1.2 27 49-80 5-31 (50)
11 3vup_A Beta-1,4-mannanase; TIM 46.7 9.4 0.00032 25.2 1.8 22 54-75 1-22 (351)
12 2jv4_A Peptidyl-prolyl CIS/tra 45.9 8.9 0.0003 22.0 1.4 16 65-80 20-35 (54)
13 1s1d_A Apyrase; adpase, five-b 44.0 18 0.0006 28.2 3.2 35 38-72 38-76 (331)
14 2k7i_A UPF0339 protein ATU0232 43.1 13 0.00043 23.5 1.9 21 39-60 22-42 (83)
15 1e0m_A Wwprototype; SH3 protot 41.2 13 0.00044 18.9 1.4 16 65-80 15-30 (37)
16 1nnx_A Protein YGIW; structura 36.0 32 0.0011 22.3 3.0 26 54-79 39-65 (109)
17 3imo_A Integron cassette prote 34.5 22 0.00074 24.6 2.1 11 62-72 84-94 (133)
18 2l5f_A PRE-mRNA-processing fac 33.1 18 0.00062 22.2 1.4 16 65-80 23-38 (92)
19 3bid_A UPF0339 protein NMB1088 33.0 28 0.00097 20.6 2.2 18 43-60 3-20 (64)
20 2ysh_A GAS-7, growth-arrest-sp 32.4 21 0.0007 18.6 1.4 16 65-80 19-34 (40)
21 1ymz_A CC45; artificial protei 31.2 22 0.00076 18.8 1.4 16 65-80 20-35 (43)
22 1wr3_A Ubiquitin-protein ligas 30.2 24 0.00083 17.9 1.4 16 65-80 16-31 (36)
23 3gla_A Low molecular weight he 27.4 29 0.001 20.6 1.6 14 51-64 79-92 (100)
24 1ew4_A CYAY protein; friedreic 26.8 39 0.0013 21.6 2.2 21 54-74 31-54 (106)
25 2k49_A UPF0339 protein SO_3888 26.4 35 0.0012 22.5 2.0 20 41-60 3-22 (118)
26 4gx7_A Cytolysin and hemolysin 25.8 42 0.0014 23.6 2.4 34 46-79 83-125 (152)
27 3oeq_A Frataxin homolog, mitoc 25.6 50 0.0017 22.0 2.7 21 54-74 50-73 (123)
28 4b5o_A Alpha-tubulin N-acetylt 25.4 55 0.0019 23.7 3.0 36 35-73 77-113 (200)
29 2law_A Yorkie homolog; YAP, SM 24.4 40 0.0014 17.5 1.6 17 64-80 17-33 (38)
30 3db7_A Putative calcium-regula 24.0 76 0.0026 20.3 3.3 24 44-73 95-118 (127)
31 3t3l_A Frataxin, mitochondrial 23.8 60 0.002 21.6 2.8 22 53-74 42-67 (129)
32 2kyk_A E3 ubiquitin-protein li 23.3 39 0.0013 17.5 1.4 16 65-80 18-33 (39)
33 2k8e_A UPF0339 protein YEGP; p 23.3 35 0.0012 22.7 1.6 24 37-60 15-38 (130)
34 1wr4_A Ubiquitin-protein ligas 22.6 40 0.0014 16.8 1.4 16 65-80 16-31 (36)
35 2czr_A TBP-interacting protein 22.2 19 0.00064 26.7 -0.0 15 57-73 139-153 (226)
36 4fei_A Heat shock protein-rela 22.1 42 0.0014 20.3 1.6 14 51-64 76-89 (102)
37 3l1e_A Alpha-crystallin A chai 22.0 46 0.0016 20.5 1.8 16 50-65 69-85 (106)
38 3q9p_A Heat shock protein beta 21.9 48 0.0016 19.5 1.8 14 51-64 65-79 (85)
39 2aen_A Hemagglutinin, outer ca 21.6 1.3E+02 0.0044 21.3 4.2 17 59-75 105-121 (164)
40 4eld_A MJ16.5-P1, small heat s 21.5 42 0.0014 22.0 1.6 13 52-64 133-145 (161)
41 2ysc_A Amyloid beta A4 precurs 20.9 40 0.0014 18.0 1.2 15 65-80 20-34 (39)
42 1wr7_A NEDD4-2; all-beta, liga 20.6 46 0.0016 17.5 1.4 16 65-80 20-35 (41)
43 2y1y_A Alpha-crystallin B chai 20.4 53 0.0018 19.4 1.8 14 51-64 64-78 (90)
44 1o6w_A PRP40, PRE-mRNA process 20.2 46 0.0016 19.2 1.5 16 65-80 11-26 (75)
45 3elg_A Uncharacterized peripla 20.0 87 0.003 20.0 2.9 24 44-73 96-119 (128)
No 1
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=100.00 E-value=6.3e-44 Score=230.63 Aligned_cols=70 Identities=70% Similarity=1.204 Sum_probs=46.8
Q ss_pred ccCCCCCCCCCCCCCCCCCc-CCCCCCCEEEEEEeeeeecCCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 11 VCGIEDEPLNSSDDVSEEDP-ALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 11 ~~~~~ed~lnSddD~sd~d~-e~~~~~nvilC~ydKV~R~KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
..+++++||||+||+|++++ +.++++|+|||||+||+|+||||||+||+||||||||||||+||+|||||
T Consensus 6 ~~~~~ed~lnsd~Dd~dd~~~~~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkdy~F~ka~GE~eW 76 (76)
T 1nvp_C 6 DGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 76 (76)
T ss_dssp ------------------------CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred cccccccccCCcCCCcccccccccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEEEEEeccceeecC
Confidence 45678999999999998877 67899999999999999999999999999999999999999999999999
No 2
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=100.00 E-value=1.6e-41 Score=220.80 Aligned_cols=69 Identities=35% Similarity=0.704 Sum_probs=45.9
Q ss_pred cCCCCCCCCCCCCCCCCCc------CCCCCCCEEEEEEeeeeecCCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 12 CGIEDEPLNSSDDVSEEDP------ALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 12 ~~~~ed~lnSddD~sd~d~------e~~~~~nvilC~ydKV~R~KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
...++++||||+|+||++. ++.+++|+|||||+||+|+||||||+||+||||||||||||+||+|||+|
T Consensus 4 ~~~d~d~insdlDd~dd~~~~~~~~~d~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkDy~F~ka~GE~eW 78 (79)
T 1nh2_C 4 ALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78 (79)
T ss_dssp -----------------CCBC---------CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred cccccccccCccCCccccccccccccccccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEEEEEecccEEEEE
Confidence 3568999999999987754 34678999999999999999999999999999999999999999999999
No 3
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=228.94 Aligned_cols=68 Identities=35% Similarity=0.712 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCc------CCCCCCCEEEEEEeeeeecCCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 13 GIEDEPLNSSDDVSEEDP------ALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 13 ~~~ed~lnSddD~sd~d~------e~~~~~nvilC~ydKV~R~KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
..++|+||||+|+||++. +...+.|+||||||||+|+||||||+||||||+||||||||+||+|||+|
T Consensus 212 ~~d~d~insdlDd~dd~~~~~~~~~~~~~~n~vlc~ydKV~R~knkWKc~lKdGi~~ingkdy~F~ka~GE~ew 285 (286)
T 1rm1_C 212 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285 (286)
T ss_dssp ----------------CCBCCC---CSTTSCEEEEEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred ccccccccCccCCcccccccccccccccccceEEEEEeeeeecccceeEEeeeeeEEECCceeeeeeccEEEee
Confidence 458899999999988754 44678999999999999999999999999999999999999999999999
No 4
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=74.00 E-value=2.2 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=17.2
Q ss_pred eEEECCeeeEeeeceeeeeC
Q psy11263 61 IMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 61 im~ingkDyvF~ka~GE~eW 80 (80)
+-+-.|+-|.|+..||+-.|
T Consensus 5 ~~~~~g~~YYyN~~T~~s~W 24 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKTKLH 24 (27)
T ss_dssp EEESSSSEEEEETTTTEEES
T ss_pred EECCCCCeEEEECCCCCEec
Confidence 44568999999999999888
No 5
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=71.28 E-value=1.8 Score=22.94 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=15.0
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|-|+..|++..|
T Consensus 15 ~G~~YYyN~~T~es~W 30 (37)
T 1e0l_A 15 DGKTYYYNNRTLESTW 30 (37)
T ss_dssp TSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCCEEe
Confidence 6999999999999988
No 6
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=70.02 E-value=2.1 Score=23.27 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 50 RNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 50 KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
..-|+... .-+|+-|-|+..|++..|
T Consensus 9 ~~~W~e~~-----~~~G~~YYyN~~T~eS~W 34 (40)
T 2ysi_A 9 EEIWVENK-----TPDGKVYYYNARTRESAW 34 (40)
T ss_dssp CCSEEEEE-----CTTSCEEEEETTTCCEES
T ss_pred CCCCEEEE-----CCCCCEEEEECCCCCEEe
Confidence 34677643 348999999999999988
No 7
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=69.78 E-value=1.8 Score=23.57 Aligned_cols=26 Identities=12% Similarity=0.516 Sum_probs=19.8
Q ss_pred CCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 50 RNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 50 KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
..-|+... .-+|+-|-|+..||+..|
T Consensus 11 ~~~W~e~~-----~~~G~~YYyN~~T~eS~W 36 (41)
T 1ywi_A 11 KSMWTEHK-----SPDGRTYYYNTETKQSTW 36 (41)
T ss_dssp -CCEEEEE-----ETTTEEEEEETTTTEEEE
T ss_pred CCCcEEEE-----CCCCCEEEEECCCCCEEe
Confidence 34577643 238999999999999887
No 8
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=62.26 E-value=3.8 Score=23.42 Aligned_cols=16 Identities=13% Similarity=0.517 Sum_probs=14.9
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
.|+-|.|+..||+..|
T Consensus 23 ~gr~YY~N~~T~~SqW 38 (52)
T 2jx8_A 23 ENRPYYFNRFTNQSLW 38 (52)
T ss_dssp TTEEEEEETTTTEEES
T ss_pred cCCEEEEECCCCCEEe
Confidence 5899999999999988
No 9
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=59.74 E-value=9.2 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=20.5
Q ss_pred cCCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 49 SRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 49 ~KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
+++-|.-..-. +|+-|.|+..||+..|
T Consensus 3 ~~~~W~e~~~~-----~G~~YYyN~~T~~s~W 29 (75)
T 2jxw_A 3 SKGRWVEGITS-----EGYHYYYDLISGASQW 29 (75)
T ss_dssp CCCCEEEEEET-----TTEEEEEETTTTEEEC
T ss_pred CCCCcEEEECC-----CCCEEEEECCCCCEee
Confidence 45567654432 7999999999999887
No 10
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=56.40 E-value=4.5 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=21.0
Q ss_pred cCCeeEEEecceeEEECCeeeEeeeceeeeeC
Q psy11263 49 SRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80 (80)
Q Consensus 49 ~KnKWKc~LKdGim~ingkDyvF~ka~GE~eW 80 (80)
+++.|....-. +|+.|.|+..|++..|
T Consensus 5 ~~~~W~e~~s~-----~G~~YYyN~~T~eS~W 31 (50)
T 2dk1_A 5 SSGRWVEGITS-----EGYHYYYDLISGASQW 31 (50)
T ss_dssp CSCCEEECCCS-----TTCCCEEESSSCCEES
T ss_pred CCCCeEEEECC-----CCCEEEEECCCCCEEe
Confidence 34567765432 7999999999999988
No 11
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=46.65 E-value=9.4 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=18.7
Q ss_pred EEEecceeEEECCeeeEeeece
Q psy11263 54 KFYLKDGIMNLNGKDFVFLKAN 75 (80)
Q Consensus 54 Kc~LKdGim~ingkDyvF~ka~ 75 (80)
|+..+++-+.+|||.+.|.-++
T Consensus 1 rv~v~g~~f~~nG~~~~~~G~N 22 (351)
T 3vup_A 1 RLHIQNGHFVLNGQRVFLSGGN 22 (351)
T ss_dssp CCEEETTEEEETTEEBCEEEEE
T ss_pred CEEEECCEEEECCEEEEEEEEe
Confidence 5678899899999999998765
No 12
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=45.90 E-value=8.9 Score=21.99 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=14.7
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
.|+-|.|+..||+-.|
T Consensus 20 ~Gr~YY~N~~T~~sqW 35 (54)
T 2jv4_A 20 KNLPYYFNPATRESRW 35 (54)
T ss_dssp SSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCcEEe
Confidence 5899999999999988
No 13
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=44.00 E-value=18 Score=28.20 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=26.9
Q ss_pred EEEEEEeeeeec--CCeeEEEecceeEEECCe--eeEee
Q psy11263 38 IVVCQYDKITRS--RNKWKFYLKDGIMNLNGK--DFVFL 72 (80)
Q Consensus 38 vilC~ydKV~R~--KnKWKc~LKdGim~ingk--DyvF~ 72 (80)
.|+.=-||-+|+ +++|++.||-|.+..+++ .|-|.
T Consensus 38 aiIaDLD~~Sk~~~~~~w~S~~~~G~L~~~~~~~~~si~ 76 (331)
T 1s1d_A 38 AVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76 (331)
T ss_dssp EEEEECGGGGBCSSTTCEEEEEEEEEEEEETTSSCEEEE
T ss_pred EEEecCchhccccCCCcEEEEEEEEEEEECCCCCeEEEE
Confidence 355666888885 889999999999999773 55544
No 14
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=43.10 E-value=13 Score=23.50 Aligned_cols=21 Identities=10% Similarity=0.331 Sum_probs=17.5
Q ss_pred EEEEEeeeeecCCeeEEEecce
Q psy11263 39 VVCQYDKITRSRNKWKFYLKDG 60 (80)
Q Consensus 39 ilC~ydKV~R~KnKWKc~LKdG 60 (80)
|.. |+.-..+.++|+|.||.+
T Consensus 22 Mag-FEi~k~~~Gq~rFrLkA~ 42 (83)
T 2k7i_A 22 MYK-FEIYQDKAGEYRFRFKAS 42 (83)
T ss_dssp CCE-EEEEECTTSCEEEEECCT
T ss_pred ccc-EEEEEcCCCCEEEEEEEC
Confidence 445 999888999999999974
No 15
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=41.21 E-value=13 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=14.6
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|++-.|
T Consensus 15 ~G~~Yy~n~~t~~t~W 30 (37)
T 1e0m_A 15 NGKTYYYNHNTKTSTW 30 (37)
T ss_dssp SCCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCCeee
Confidence 7999999999998877
No 16
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=35.96 E-value=32 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.4
Q ss_pred EEEecceeE-EECCeeeEeeeceeeee
Q psy11263 54 KFYLKDGIM-NLNGKDFVFLKANGDAD 79 (80)
Q Consensus 54 Kc~LKdGim-~ingkDyvF~ka~GE~e 79 (80)
.++|..=|+ +|++-.|+|.-+||++.
T Consensus 39 ~V~L~G~Iv~~~~~d~Y~F~D~TG~I~ 65 (109)
T 1nnx_A 39 WVTLRGNIVERISDDLYVFKDASGTIN 65 (109)
T ss_dssp EEEEEEEEEEEEETTEEEEEETTEEEE
T ss_pred eEEEEEEEEEEeCCCeEEEECCCccEE
Confidence 577777777 68899999999999863
No 17
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=34.50 E-value=22 Score=24.58 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=10.2
Q ss_pred EEECCeeeEee
Q psy11263 62 MNLNGKDFVFL 72 (80)
Q Consensus 62 m~ingkDyvF~ 72 (80)
++|+||.|+|+
T Consensus 84 vti~gkRyaFs 94 (133)
T 3imo_A 84 VTINGERYAFS 94 (133)
T ss_dssp EEETTEEEEEE
T ss_pred EEEcCEEEEEE
Confidence 78999999996
No 18
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=33.10 E-value=18 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.694 Sum_probs=15.0
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.|+..||+-.|
T Consensus 23 ~Gr~YYyN~~T~~s~W 38 (92)
T 2l5f_A 23 DGRTYYYNTETKQSTW 38 (92)
T ss_dssp TSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCceec
Confidence 8999999999999887
No 19
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=32.96 E-value=28 Score=20.61 Aligned_cols=18 Identities=11% Similarity=0.486 Sum_probs=12.3
Q ss_pred EeeeeecCCeeEEEecce
Q psy11263 43 YDKITRSRNKWKFYLKDG 60 (80)
Q Consensus 43 ydKV~R~KnKWKc~LKdG 60 (80)
|+.-....++|++.||.+
T Consensus 3 Fei~~~~~G~frfrLka~ 20 (64)
T 3bid_A 3 FEIYKDAKGEYRWRLKAA 20 (64)
T ss_dssp EEEEECTTSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEEeC
Confidence 444455667888888864
No 20
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=32.37 E-value=21 Score=18.59 Aligned_cols=16 Identities=13% Similarity=0.623 Sum_probs=14.5
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.|+..|++-.|
T Consensus 19 ~Gr~YY~n~~T~~t~W 34 (40)
T 2ysh_A 19 QGRRYYVNTTTNETTW 34 (40)
T ss_dssp TSCEEEECSSSCCEES
T ss_pred CCCEEEEECCCCCEeC
Confidence 7999999999998877
No 21
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=31.21 E-value=22 Score=18.79 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.6
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|++-.|
T Consensus 20 ~Gr~YY~n~~T~~t~W 35 (43)
T 1ymz_A 20 EGKVYYFNVRTLTTTW 35 (43)
T ss_dssp TSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCCCcc
Confidence 7999999999998877
No 22
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=30.24 E-value=24 Score=17.87 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=14.5
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|++-.|
T Consensus 16 ~G~~Yy~n~~t~~t~W 31 (36)
T 1wr3_A 16 LGRTYYVNHNNRSTQW 31 (36)
T ss_dssp SSCEEEEETTTCCEES
T ss_pred CCCEEEEECCCCCEee
Confidence 7999999999998877
No 23
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=27.39 E-value=29 Score=20.65 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=10.8
Q ss_pred CeeEEEecceeEEE
Q psy11263 51 NKWKFYLKDGIMNL 64 (80)
Q Consensus 51 nKWKc~LKdGim~i 64 (80)
.+=+..|+|||++|
T Consensus 79 ~~i~A~~~~GvL~I 92 (100)
T 3gla_A 79 DGITAAGRNGVLEI 92 (100)
T ss_dssp TSCEEEEETTEEEE
T ss_pred HHeEEEEeCCEEEE
Confidence 35567789999987
No 24
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=26.77 E-value=39 Score=21.60 Aligned_cols=21 Identities=10% Similarity=0.458 Sum_probs=15.3
Q ss_pred EEEecceeEEEC---CeeeEeeec
Q psy11263 54 KFYLKDGIMNLN---GKDFVFLKA 74 (80)
Q Consensus 54 Kc~LKdGim~in---gkDyvF~ka 74 (80)
-|.+.+|||+|. |.-||++|-
T Consensus 31 D~e~~~gVLti~f~~~~~~VINkQ 54 (106)
T 1ew4_A 31 DCEINGGVLTITFENGSKIIINRQ 54 (106)
T ss_dssp EEEEETTEEEEECTTSCEEEEEEE
T ss_pred eeeccCCEEEEEECCCCEEEEeCC
Confidence 456778888884 667888874
No 25
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=26.39 E-value=35 Score=22.47 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=15.6
Q ss_pred EEEeeeeecCCeeEEEecce
Q psy11263 41 CQYDKITRSRNKWKFYLKDG 60 (80)
Q Consensus 41 C~ydKV~R~KnKWKc~LKdG 60 (80)
..|+.-..+.++|++.||.+
T Consensus 3 g~FEi~~~~~g~~rFrLka~ 22 (118)
T 2k49_A 3 GWYELSKSSNDQFKFVLKAG 22 (118)
T ss_dssp CEEEEEECTTSCEEEEEECS
T ss_pred ceEEEEEcCCCCEEEEEEEC
Confidence 45777777888999999953
No 26
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae}
Probab=25.76 E-value=42 Score=23.57 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.6
Q ss_pred eeecCCee--------EEEecce-eEEECCeeeEeeeceeeee
Q psy11263 46 ITRSRNKW--------KFYLKDG-IMNLNGKDFVFLKANGDAD 79 (80)
Q Consensus 46 V~R~KnKW--------Kc~LKdG-im~ingkDyvF~ka~GE~e 79 (80)
|++-|.+| +|+++|| .+.++-|+|.+++-+.-|+
T Consensus 83 vT~G~f~~gg~hilaltF~~~dGS~v~~GSK~ya~~~~~e~f~ 125 (152)
T 4gx7_A 83 ATSGDFQYGGQQLVALTFTYQDGRQQTVGSKAYVTNAHEDRFD 125 (152)
T ss_dssp EEEEEETTSSEEEEEEEEEETTSCEEEEECSTTEEEEEEEEEE
T ss_pred EEeeeeeccCceEEEEEEEEcCCcEEEEecccccccccceeEE
Confidence 45555655 7999999 6788999999999887764
No 27
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=25.63 E-value=50 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=15.5
Q ss_pred EEEecceeEEE---CCeeeEeeec
Q psy11263 54 KFYLKDGIMNL---NGKDFVFLKA 74 (80)
Q Consensus 54 Kc~LKdGim~i---ngkDyvF~ka 74 (80)
-|.+.+|||+| ||--||++|-
T Consensus 50 Dve~~~gVLti~f~~~~~~VINkQ 73 (123)
T 3oeq_A 50 DVELSHGVMTLEIPAFGTYVINKQ 73 (123)
T ss_dssp EEEECSSEEEEECTTTCCEEEECC
T ss_pred EEEccCCEEEEEECCCCEEEEeCC
Confidence 45567888887 5778888874
No 28
>4b5o_A Alpha-tubulin N-acetyltransferase; microtubules, cilium, intraflagellar transport; HET: ACO; 1.05A {Homo sapiens} PDB: 4b5p_A*
Probab=25.39 E-value=55 Score=23.73 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.4
Q ss_pred CCCEEEEEEeeeeecCCeeEEEecceeEEECCee-eEeee
Q psy11263 35 TDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKD-FVFLK 73 (80)
Q Consensus 35 ~~nvilC~ydKV~R~KnKWKc~LKdGim~ingkD-yvF~k 73 (80)
+++.+.++.|...+..+++.|. |++.++-|. |+|..
T Consensus 77 ~d~~lYll~d~~~~~~~~~~v~---G~LKvG~K~Lfl~d~ 113 (200)
T 4b5o_A 77 NRHVVYILKDSSARPAGKGAII---GFIKVGYKKLFVLDD 113 (200)
T ss_dssp SCCEEEEEECTTCCCC----EE---EEEEEEECCEEEECT
T ss_pred CCcEEEEEeecccccCCCceEE---EEEEEeeeeeEEECC
Confidence 4689999999999999999998 999999886 45444
No 29
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=24.43 E-value=40 Score=17.47 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=14.6
Q ss_pred ECCeeeEeeeceeeeeC
Q psy11263 64 LNGKDFVFLKANGDADW 80 (80)
Q Consensus 64 ingkDyvF~ka~GE~eW 80 (80)
-+|+-|.++..|+.-.|
T Consensus 17 ~~G~~Yy~nh~t~~ttW 33 (38)
T 2law_A 17 QDGEIYYINHKNKTTSW 33 (38)
T ss_dssp TTTEEEEEETTTTEEES
T ss_pred CCCCEEEEECCCCCEeC
Confidence 47999999999988777
No 30
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=24.04 E-value=76 Score=20.33 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.7
Q ss_pred eeeeecCCeeEEEecceeEEECCeeeEeee
Q psy11263 44 DKITRSRNKWKFYLKDGIMNLNGKDFVFLK 73 (80)
Q Consensus 44 dKV~R~KnKWKc~LKdGim~ingkDyvF~k 73 (80)
.+|.|.++.+++.|.+| .+..|.+
T Consensus 95 ~~ie~~~~~YeV~L~ng------~el~Fd~ 118 (127)
T 3db7_A 95 LKIERDKKDYEVKLSNR------TELKFDL 118 (127)
T ss_dssp EEEEECSSEEEEEETTS------CEEEEET
T ss_pred EEEEEECCEEEEEECCC------cEEEEcC
Confidence 46777889999999876 6777753
No 31
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=23.76 E-value=60 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=16.0
Q ss_pred eEEEecceeEEE----CCeeeEeeec
Q psy11263 53 WKFYLKDGIMNL----NGKDFVFLKA 74 (80)
Q Consensus 53 WKc~LKdGim~i----ngkDyvF~ka 74 (80)
.-|.+.+|||+| ||--||++|-
T Consensus 42 ~D~e~~~gVLti~f~~~~g~~VINkQ 67 (129)
T 3t3l_A 42 YDVSFGSGVLTVKLGGDLGTYVINKQ 67 (129)
T ss_dssp CEEEEETTEEEEECCTTCCEEEEEEE
T ss_pred eeeecCCCEEEEEEcCCCCEEEEeCC
Confidence 346677889887 3678888874
No 32
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=23.33 E-value=39 Score=17.48 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=14.3
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|+.-.|
T Consensus 18 ~G~~YY~n~~t~~t~W 33 (39)
T 2kyk_A 18 MGRIYYVDHFTRTTTW 33 (39)
T ss_dssp TSCEEEECSSSCCEEC
T ss_pred CCCEEEEECCCCCEec
Confidence 7999999999998877
No 33
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=23.26 E-value=35 Score=22.73 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.3
Q ss_pred CEEEEEEeeeeecCCeeEEEecce
Q psy11263 37 NIVVCQYDKITRSRNKWKFYLKDG 60 (80)
Q Consensus 37 nvilC~ydKV~R~KnKWKc~LKdG 60 (80)
=+|-..|+......++|++.||.+
T Consensus 15 ~~Mag~FEi~~~~~G~~rfrLka~ 38 (130)
T 2k8e_A 15 VIMAGWFELSKSSDNQFRFVLKAG 38 (130)
T ss_dssp CCCCCEEEEEECTTCCEEEEEECT
T ss_pred ceeeeeEEEEEcCCCCEEEEEEeC
Confidence 345578999888899999999964
No 34
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=22.60 E-value=40 Score=16.78 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=13.7
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|+.-.|
T Consensus 16 ~g~~Yy~n~~t~~t~W 31 (36)
T 1wr4_A 16 KGRTYYVNHNNRTTTW 31 (36)
T ss_dssp SSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCCEeC
Confidence 6888999999988777
No 35
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=22.23 E-value=19 Score=26.73 Aligned_cols=15 Identities=33% Similarity=0.895 Sum_probs=10.9
Q ss_pred ecceeEEECCeeeEeee
Q psy11263 57 LKDGIMNLNGKDFVFLK 73 (80)
Q Consensus 57 LKdGim~ingkDyvF~k 73 (80)
||.|. +||+||||..
T Consensus 139 lK~~~--~~GqDyvFWQ 153 (226)
T 2czr_A 139 IKNNA--LAGQDYIFWQ 153 (226)
T ss_dssp HHTTC--CBTTTEEEEE
T ss_pred HHhcc--ccCcceEEEE
Confidence 45554 5899999964
No 36
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=22.11 E-value=42 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=10.7
Q ss_pred CeeEEEecceeEEE
Q psy11263 51 NKWKFYLKDGIMNL 64 (80)
Q Consensus 51 nKWKc~LKdGim~i 64 (80)
.+=+..|+|||++|
T Consensus 76 ~~i~A~~~~GvL~I 89 (102)
T 4fei_A 76 ASGVASLAGGVLTV 89 (102)
T ss_dssp TCCEEEEETTEEEE
T ss_pred hHcEEEEECCEEEE
Confidence 34567789999987
No 37
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=21.99 E-value=46 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=12.3
Q ss_pred CCeeEEEe-cceeEEEC
Q psy11263 50 RNKWKFYL-KDGIMNLN 65 (80)
Q Consensus 50 KnKWKc~L-KdGim~in 65 (80)
..+=+..| +||||+|-
T Consensus 69 ~~~i~A~~s~~GvL~I~ 85 (106)
T 3l1e_A 69 QSALSCSLSADGMLTFS 85 (106)
T ss_dssp TTSCEEEECTTSEEEEE
T ss_pred hhHcEEEECCCCEEEEE
Confidence 44567889 89999873
No 38
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=21.91 E-value=48 Score=19.55 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=11.2
Q ss_pred CeeEEEec-ceeEEE
Q psy11263 51 NKWKFYLK-DGIMNL 64 (80)
Q Consensus 51 nKWKc~LK-dGim~i 64 (80)
.+=+..|+ |||++|
T Consensus 65 ~~i~A~~~~~GvL~I 79 (85)
T 3q9p_A 65 TQVSSSLSPEGTLTV 79 (85)
T ss_dssp GGCEEEECTTSEEEE
T ss_pred HHcEEEECCCCEEEE
Confidence 35688888 999987
No 39
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization antigen, spike protein; 1.60A {Human rotavirus A} PDB: 2dwr_A
Probab=21.59 E-value=1.3e+02 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=13.6
Q ss_pred ceeEEECCeeeEeeece
Q psy11263 59 DGIMNLNGKDFVFLKAN 75 (80)
Q Consensus 59 dGim~ingkDyvF~ka~ 75 (80)
.|+|.-+||=|.|+..+
T Consensus 105 ~a~mK~ggrl~ty~GeT 121 (164)
T 2aen_A 105 VGMLKYGGRVWTFHGET 121 (164)
T ss_dssp EEEEEETTEEEEEEEET
T ss_pred eeeEecCCEEEEEECCC
Confidence 48999999999987543
No 40
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=21.47 E-value=42 Score=21.97 Aligned_cols=13 Identities=8% Similarity=0.347 Sum_probs=10.5
Q ss_pred eeEEEecceeEEE
Q psy11263 52 KWKFYLKDGIMNL 64 (80)
Q Consensus 52 KWKc~LKdGim~i 64 (80)
+=+..|+|||++|
T Consensus 133 ~i~A~~~nGvL~I 145 (161)
T 4eld_A 133 NASAKFENGVLSV 145 (161)
T ss_dssp GCEEEEETTEEEE
T ss_pred cEEEEEECCEEEE
Confidence 4577889999987
No 41
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=20.89 E-value=40 Score=17.98 Aligned_cols=15 Identities=20% Similarity=0.764 Sum_probs=12.4
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+ |.|+..|+.-.|
T Consensus 20 ~G~-YY~n~~t~~tqW 34 (39)
T 2ysc_A 20 AGT-YYWHVPSGSTQW 34 (39)
T ss_dssp TEE-EEEESSSCCEES
T ss_pred CCC-EEEEcCCCCEec
Confidence 465 999999998877
No 42
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=20.61 E-value=46 Score=17.45 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=14.2
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.++..|+.-.|
T Consensus 20 ~G~~Yy~n~~t~~t~W 35 (41)
T 1wr7_A 20 NGRPFFIDHNTKTTTW 35 (41)
T ss_dssp TSCEEEEETTTTEEES
T ss_pred CCCEEEEECCCCCeec
Confidence 7999999999988777
No 43
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=20.39 E-value=53 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=10.9
Q ss_pred CeeEEEe-cceeEEE
Q psy11263 51 NKWKFYL-KDGIMNL 64 (80)
Q Consensus 51 nKWKc~L-KdGim~i 64 (80)
.+=+..| +|||++|
T Consensus 64 ~~i~A~~~~~GvL~I 78 (90)
T 2y1y_A 64 LTITSSMSSDGVLTV 78 (90)
T ss_dssp GGCEEEECTTSEEEE
T ss_pred hHcEEEECCCCEEEE
Confidence 3457888 8999987
No 44
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=20.18 E-value=46 Score=19.15 Aligned_cols=16 Identities=13% Similarity=0.555 Sum_probs=14.5
Q ss_pred CCeeeEeeeceeeeeC
Q psy11263 65 NGKDFVFLKANGDADW 80 (80)
Q Consensus 65 ngkDyvF~ka~GE~eW 80 (80)
+|+-|.|+..|++-.|
T Consensus 11 ~Gr~YY~n~~T~~s~W 26 (75)
T 1o6w_A 11 SGRIYYYNTLTKKSTW 26 (75)
T ss_dssp TCCEEEEETTTTEEES
T ss_pred CCCeEEEECCCCCEEe
Confidence 7999999999998877
No 45
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=20.02 E-value=87 Score=19.97 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=18.6
Q ss_pred eeeeecCCeeEEEecceeEEECCeeeEeee
Q psy11263 44 DKITRSRNKWKFYLKDGIMNLNGKDFVFLK 73 (80)
Q Consensus 44 dKV~R~KnKWKc~LKdGim~ingkDyvF~k 73 (80)
.+|.|.++.+++.|.+| ++..|.+
T Consensus 96 ~~iek~~~~YeVeL~~~------~el~fd~ 119 (128)
T 3elg_A 96 VKIERNRKGYELTLENG------LEVDFDQ 119 (128)
T ss_dssp EEEEEETTEEEEEETTS------CEEEECT
T ss_pred EEEEEeCCEEEEEECCC------eEEEEeC
Confidence 46777899999999975 6667753
Done!