RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11263
         (80 letters)



>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 88.6 bits (220), Expect = 3e-26
 Identities = 36/47 (76%), Positives = 44/47 (93%)

Query: 34 DTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
          DT+N+VVCQYDKI RS+NKWKF+LKDGIMNLNG+D++F KA GDA+W
Sbjct: 1  DTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 47


>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 59

 Score = 86.7 bits (215), Expect = 3e-25
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 23 DDVSEEDPALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
          D +  E       +N+++C YDK+TR++ +WK  LKDG++ +N  D+ F KA  +A+W
Sbjct: 1  DYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 58


>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia
           coli [TaxId: 562]}
          Length = 147

 Score = 24.9 bits (54), Expect = 1.0
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 8/65 (12%)

Query: 5   PTLAQVVCGIEDEPLNSSDDV----SEEDPALFDTDN----IVVCQYDKITRSRNKWKFY 56
              A V      +  +S  D+                     V  +      +R ++K Y
Sbjct: 75  RGGAPVEIAWPQKRSSSRRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAY 134

Query: 57  LKDGI 61
              G 
Sbjct: 135 RVAGF 139


>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate
          dehydrogenase, N-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 203

 Score = 24.2 bits (52), Expect = 2.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 11 VCGIEDEPLNSSDDVSEEDPALF 33
          VCGI  E L   D   + D  +F
Sbjct: 1  VCGILREELFQGDAFHQSDTHIF 23


>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 317

 Score = 24.1 bits (52), Expect = 2.4
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 30  PALFDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDADW 80
             L+D DN  +  YDK+++++  +  + K+ + +L   D  +L   G    
Sbjct: 250 YGLYDYDNPFLKVYDKVSKTQEDFDAFCKEWVFDLKDHD-EYLNKLGATRL 299


>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 246

 Score = 24.1 bits (51), Expect = 2.6
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 33 FDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLN 65
          +  D       ++I R +  W+    D ++ L+
Sbjct: 30 YTVDQAA----EQILREQASWQKAPGDSVLTLS 58


>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 99

 Score = 23.3 bits (50), Expect = 3.7
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 46 ITRSRNKWKFYLKDGIMNLNGKDFVFLKANGDA 78
          ++ ++    FY+      +   + V L A G A
Sbjct: 7  VSNTKKPLFFYVNLAKRYMQQYNDVELSALGMA 39


>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 87

 Score = 22.4 bits (48), Expect = 6.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 55 FYLKDGIMNLNGKDFVFLKANGDA 78
           Y+   +  L   D V +KA G A
Sbjct: 14 NYVVAVLTQLTSNDEVIIKARGKA 37


>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 321

 Score = 22.5 bits (48), Expect = 8.7
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 42  QYDKITRSRNKWKFYLKDGIMNLNGK 67
           +  K  R    W +Y      NL   
Sbjct: 161 KAAKRMRPAANWGYYAYPYCYNLTPN 186


>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac
          ii 18 [TaxId: 306]}
          Length = 242

 Score = 22.5 bits (47), Expect = 8.8
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 33 FDTDNIVVCQYDKITRSRNKWKFYLKDGIMNLN 65
          F  D +     D++TRS   W     DG++NL 
Sbjct: 29 FTVDQVA----DQLTRSGASWHDLNNDGVINLT 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,234
Number of extensions: 12247
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)