BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11264
         (50 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IGJ0|EFR3_DROME Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA
          PE=2 SV=3
          Length = 834

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 33/34 (97%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M+KLTFY+LSSP+KLDRIG+YLY+ A++DI+RKR
Sbjct: 62 MEKLTFYSLSSPDKLDRIGEYLYQKATKDINRKR 95


>sp|Q5SPP5|EFR3B_DANRE Protein EFR3 homolog B OS=Danio rerio GN=efr3b PE=3 SV=2
          Length = 816

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M+KLTFYALS+PEKLDRIG YL E  SRD++R R
Sbjct: 36 MEKLTFYALSAPEKLDRIGAYLSERLSRDVARHR 69


>sp|Q14156|EFR3A_HUMAN Protein EFR3 homolog A OS=Homo sapiens GN=EFR3A PE=1 SV=2
          Length = 821

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKRT 35
          M+KLTFYA+S+PEKLDRIG YL E  SRD+ R R+
Sbjct: 37 MEKLTFYAVSAPEKLDRIGSYLAERLSRDVVRHRS 71


>sp|Q8BG67|EFR3A_MOUSE Protein EFR3 homolog A OS=Mus musculus GN=Efr3a PE=1 SV=1
          Length = 819

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKRT 35
          M+KLTFYA+S+PEKLDRIG YL E  SRD+ R R+
Sbjct: 37 MEKLTFYAVSAPEKLDRIGAYLAERLSRDVVRHRS 71


>sp|Q641A2|EFR3A_XENLA Protein EFR3 homolog A OS=Xenopus laevis GN=efr3a PE=2 SV=1
          Length = 819

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 28/34 (82%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M+KLTFYA+S+PEKLDRIG YL E  SRD+ R R
Sbjct: 37 MEKLTFYAVSAPEKLDRIGAYLAERLSRDVMRHR 70


>sp|Q6ZQ18|EFR3B_MOUSE Protein EFR3 homolog B OS=Mus musculus GN=Efr3b PE=1 SV=2
          Length = 817

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M+KLTFYALS+PEKLDRIG YL E   RD+ R R
Sbjct: 36 MEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHR 69


>sp|Q9Y2G0|EFR3B_HUMAN Protein EFR3 homolog B OS=Homo sapiens GN=EFR3B PE=1 SV=2
          Length = 817

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M+KLTFYALS+PEKLDRIG YL E   RD+ R R
Sbjct: 36 MEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHR 69


>sp|Q09263|EFR3_CAEEL Protein EFR3 homolog OS=Caenorhabditis elegans GN=C32D5.3 PE=3
          SV=1
          Length = 859

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M KLTFYA+S PEKL+RIG+YL     RD+SR+R
Sbjct: 35 MQKLTFYAISHPEKLERIGEYLVMRMVRDLSRQR 68


>sp|Q620W3|EFR3_CAEBR Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3
          SV=1
          Length = 859

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 1  MDKLTFYALSSPEKLDRIGDYLYETASRDISRKR 34
          M KLTFYA+S PEKL+RIG+YL     RD++R+R
Sbjct: 35 MQKLTFYAISHPEKLERIGEYLVMRMVRDLNRQR 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.128    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,377,594
Number of Sequences: 539616
Number of extensions: 377409
Number of successful extensions: 1012
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 10
length of query: 50
length of database: 191,569,459
effective HSP length: 23
effective length of query: 27
effective length of database: 179,158,291
effective search space: 4837273857
effective search space used: 4837273857
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)