Query psy11264
Match_columns 50
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 22:25:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ygw_A Malonyl-COA decarboxyla 45.9 20 0.00068 26.8 3.5 38 5-43 257-297 (460)
2 3l32_A Phosphoprotein; antipar 42.7 15 0.00053 20.0 1.9 14 14-27 8-21 (45)
3 1jdp_H CNP, C-type natriuretic 36.2 5.7 0.00019 19.6 -0.4 8 13-20 9-16 (26)
4 1unn_C POL IV, DNA polymerase 31.0 53 0.0018 18.2 3.1 33 8-40 16-48 (115)
5 2odf_A AGR_C_3887P, hypothetic 30.8 40 0.0014 22.1 2.8 37 12-48 117-158 (257)
6 3gfo_A Cobalt import ATP-bindi 30.4 53 0.0018 21.3 3.3 32 15-47 174-205 (275)
7 3bzq_A Nitrogen regulatory pro 29.6 35 0.0012 19.2 2.2 22 1-24 3-24 (114)
8 3n56_C Natriuretic peptides B; 28.6 7.2 0.00025 20.0 -0.9 8 13-20 13-20 (32)
9 3n57_C Atrial natriuretic fact 28.2 9.9 0.00034 19.0 -0.4 8 13-20 10-17 (28)
10 2j9c_A GLNK1, hypothetical nit 28.2 38 0.0013 19.5 2.2 22 1-24 3-24 (119)
11 2pcj_A ABC transporter, lipopr 27.8 55 0.0019 20.1 3.0 30 15-46 171-200 (224)
12 3mhy_A PII-like protein PZ; PI 27.1 54 0.0018 18.8 2.7 23 1-25 1-23 (112)
13 2gw8_A PII signal transduction 26.1 44 0.0015 19.0 2.2 22 1-24 3-24 (114)
14 3dfe_A Putative PII-like signa 25.9 28 0.00095 20.5 1.3 17 8-24 11-27 (111)
15 3m3h_A OPRT, oprtase, orotate 25.3 39 0.0013 21.9 2.0 22 8-29 64-85 (234)
16 2eg2_A Nitrogen regulatory pro 24.5 65 0.0022 18.1 2.7 22 1-24 1-22 (112)
17 3iml_A S-adenosylmethionine sy 23.9 54 0.0018 24.3 2.7 23 10-32 273-295 (399)
18 1i54_A Cytochrome C; zinc-porp 23.4 42 0.0014 17.4 1.6 19 6-24 82-100 (103)
19 1b0u_A Histidine permease; ABC 23.3 65 0.0022 20.4 2.7 30 15-46 184-213 (262)
20 2olj_A Amino acid ABC transpor 22.9 74 0.0025 20.4 3.0 30 15-46 190-219 (263)
21 3gs2_A E3 ubiquitin-protein li 22.9 48 0.0017 20.8 2.0 17 13-29 32-48 (111)
22 3m05_A Uncharacterized protein 22.8 24 0.00081 21.4 0.6 18 7-24 10-27 (114)
23 1hwu_A PII protein; herbaspiri 22.4 76 0.0026 17.7 2.7 22 1-24 1-22 (112)
24 1pt6_A Integrin alpha-1; cell 22.3 54 0.0018 19.1 2.1 24 5-28 175-198 (213)
25 2jxz_A Calcitonin; A-helix, am 21.9 72 0.0025 15.9 2.2 16 18-33 4-19 (33)
26 1g6h_A High-affinity branched- 21.8 94 0.0032 19.4 3.2 31 15-47 184-214 (257)
27 3hcn_A Ferrochelatase, mitocho 21.7 91 0.0031 21.6 3.4 31 19-49 170-204 (359)
28 1bku_A Calcitonin; hormone, ca 21.7 67 0.0023 16.1 2.1 15 19-33 5-19 (33)
29 3dez_A OPRT, oprtase, orotate 21.7 51 0.0017 21.6 2.0 22 8-29 76-97 (243)
30 2q7s_A N-formylglutamate amido 20.3 82 0.0028 21.1 2.9 36 13-48 136-176 (290)
31 2onk_A Molybdate/tungstate ABC 20.3 85 0.0029 19.7 2.8 31 15-46 157-187 (240)
32 3ce8_A Putative PII-like nitro 20.1 25 0.00085 21.4 0.2 18 7-24 27-44 (120)
33 3so4_A Methionine-adenosyltran 20.1 71 0.0024 23.8 2.7 23 10-32 290-312 (415)
34 1bax_A M-PMV MA, M-PMV matrix 20.0 26 0.0009 21.1 0.4 25 5-30 65-89 (94)
No 1
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=45.92 E-value=20 Score=26.82 Aligned_cols=38 Identities=21% Similarity=0.512 Sum_probs=30.1
Q ss_pred eeecccCCch-HH--HHHHHHHHHHhHHhhhhccCceeEEee
Q psy11264 5 TFYALSSPEK-LD--RIGDYLYETASRDISRKRTQCSSTIST 43 (50)
Q Consensus 5 tfYals~PeK-LD--RIG~YL~~rl~RDl~R~R~~~v~iis~ 43 (50)
+||++|+=++ |- ..|.+|-+|...+|.+. ..+++..+|
T Consensus 257 IFYSISntQ~GL~GIsfGnfLIKrVV~~L~~E-~P~lktF~T 297 (460)
T 2ygw_A 257 IFYSISLTQQGLQGVELGTFLIKRVVKELQRE-FPHLGVFSS 297 (460)
T ss_dssp EEEEEEESCGGGTTSCHHHHHHHHHHHHHHHH-CTTCCEEEE
T ss_pred EEEeecccccccccccchhHHHHHHHHHHHHh-CcCccceee
Confidence 6999999887 33 36999999999999884 666766655
No 2
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=42.65 E-value=15 Score=20.00 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHh
Q psy11264 14 KLDRIGDYLYETAS 27 (50)
Q Consensus 14 KLDRIG~YL~~rl~ 27 (50)
=||.||.++..||.
T Consensus 8 ~LD~vG~qiVrkmK 21 (45)
T 3l32_A 8 YLDNVGVQIVRQMR 21 (45)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999999885
No 3
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=36.21 E-value=5.7 Score=19.64 Aligned_cols=8 Identities=75% Similarity=1.037 Sum_probs=6.6
Q ss_pred chHHHHHH
Q psy11264 13 EKLDRIGD 20 (50)
Q Consensus 13 eKLDRIG~ 20 (50)
.|+||||.
T Consensus 9 ~riDRIgs 16 (26)
T 1jdp_H 9 LKLDRIGS 16 (26)
T ss_pred ceeccccc
Confidence 58999985
No 4
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=30.98 E-value=53 Score=18.18 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=23.4
Q ss_pred cccCCchHHHHHHHHHHHHhHHhhhhccCceeE
Q psy11264 8 ALSSPEKLDRIGDYLYETASRDISRKRTQCSST 40 (50)
Q Consensus 8 als~PeKLDRIG~YL~~rl~RDl~R~R~~~v~i 40 (50)
-+.++|-+..+-.-|++++++.|-++..+....
T Consensus 16 d~~~~~~l~~~l~~l~~~v~~rLr~~~~~~tV~ 48 (115)
T 1unn_C 16 DIHHWSECEAIIERLYPELERRLAKVKPDLLIA 48 (115)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHCTTCBCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEE
Confidence 356777788888888888888887766444443
No 5
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics, unknown FUNC PSI-2, MCSG, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Probab=30.84 E-value=40 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=24.3
Q ss_pred CchHHHHHHHH---HHHHhHHhhh--hccCceeEEeeeeccc
Q psy11264 12 PEKLDRIGDYL---YETASRDISR--KRTQCSSTISTHQIPR 48 (50)
Q Consensus 12 PeKLDRIG~YL---~~rl~RDl~R--~R~~~v~iis~~~i~~ 48 (50)
-|.-.||..|= .+.|.+-|.+ .+.|.+.+|+.|.+|.
T Consensus 117 ~e~~~Ri~~~~~PYH~al~~~l~~~~a~~g~~vlid~HS~~p 158 (257)
T 2odf_A 117 AERFARTSALYVPFHDRVSEIIAERQAAGRKVVVVTIHSFTP 158 (257)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecCCCc
Confidence 35555666542 4455555543 4789999999999863
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=30.41 E-value=53 Score=21.28 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeecc
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQIP 47 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i~ 47 (50)
||-.+..-...+-+++.+++ |...|+++|.+.
T Consensus 174 LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~ 205 (275)
T 3gfo_A 174 LDPMGVSEIMKLLVEMQKEL-GITIIIATHDID 205 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCS
T ss_pred CCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHH
Confidence 56666655566667776444 888999999864
No 7
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=29.59 E-value=35 Score=19.25 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=15.5
Q ss_pred CcceeeecccCCchHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~ 24 (50)
|.|++ |+-.|+|+|.+=+-|.+
T Consensus 3 Mk~I~--aIIr~~~~~~v~~aL~~ 24 (114)
T 3bzq_A 3 MKLIT--AIVKPFTLDDVKTSLED 24 (114)
T ss_dssp EEEEE--EEECGGGHHHHHHHHHH
T ss_pred cEEEE--EEECHHHHHHHHHHHHH
Confidence 44554 34499999998877764
No 8
>3n56_C Natriuretic peptides B; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.10A {Homo sapiens}
Probab=28.64 E-value=7.2 Score=20.05 Aligned_cols=8 Identities=50% Similarity=0.862 Sum_probs=6.6
Q ss_pred chHHHHHH
Q psy11264 13 EKLDRIGD 20 (50)
Q Consensus 13 eKLDRIG~ 20 (50)
.|+||||.
T Consensus 13 ~riDRIGs 20 (32)
T 3n56_C 13 RKMDRISS 20 (32)
T ss_pred cceeeecc
Confidence 58999986
No 9
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=28.18 E-value=9.9 Score=19.02 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.6
Q ss_pred chHHHHHH
Q psy11264 13 EKLDRIGD 20 (50)
Q Consensus 13 eKLDRIG~ 20 (50)
.|+||||.
T Consensus 10 ~riDRIgs 17 (28)
T 3n57_C 10 GRMDRIGA 17 (28)
T ss_pred cccccccc
Confidence 58999985
No 10
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=28.16 E-value=38 Score=19.50 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=15.4
Q ss_pred CcceeeecccCCchHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~ 24 (50)
|.|++ |+=.|+|+|.+=+-|.+
T Consensus 3 Mk~I~--aII~~~~~~~v~~aL~~ 24 (119)
T 2j9c_A 3 MKKVE--AIIRPEKLEIVKKALSD 24 (119)
T ss_dssp EEEEE--EEECGGGHHHHHHHHHH
T ss_pred eEEEE--EEECHHHHHHHHHHHHH
Confidence 44454 44599999998877754
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.80 E-value=55 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeec
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQI 46 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i 46 (50)
||..+......+-+++.++ |...|+++|.+
T Consensus 171 LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~ 200 (224)
T 2pcj_A 171 LDSANTKRVMDIFLKINEG--GTSIVMVTHER 200 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 5666666555665666443 77889999974
No 12
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=27.06 E-value=54 Score=18.83 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=16.2
Q ss_pred CcceeeecccCCchHHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYET 25 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~r 25 (50)
|-|++ |+=.|+|||.+=+-|.+-
T Consensus 1 MK~I~--aIIr~~kl~~vk~AL~~~ 23 (112)
T 3mhy_A 1 MKLVM--AIIKPFKLDEVREALTSL 23 (112)
T ss_dssp CEEEE--EEECGGGHHHHHHHHHHH
T ss_pred CEEEE--EEECHHHHHHHHHHHHHC
Confidence 44555 445999999988877653
No 13
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=26.13 E-value=44 Score=18.96 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=15.3
Q ss_pred CcceeeecccCCchHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~ 24 (50)
|.|++ |+-+|+|+|.+=+-|.+
T Consensus 3 Mk~I~--aII~~~~~~~v~~aL~~ 24 (114)
T 2gw8_A 3 MKKIE--AIVKPFKLDDVREALTE 24 (114)
T ss_dssp EEEEE--EEECGGGHHHHHHHHHH
T ss_pred cEEEE--EEECHHHHHHHHHHHHH
Confidence 44444 44489999998877764
No 14
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=25.94 E-value=28 Score=20.48 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=13.9
Q ss_pred cccCCchHHHHHHHHHH
Q psy11264 8 ALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 8 als~PeKLDRIG~YL~~ 24 (50)
|+-.|+|||++-+-|.+
T Consensus 11 aIi~p~kl~~V~~aL~~ 27 (111)
T 3dfe_A 11 IVTEKVLLKKVAKIIEE 27 (111)
T ss_dssp EEEEGGGHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHH
Confidence 67789999999887754
No 15
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=25.30 E-value=39 Score=21.94 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.3
Q ss_pred cccCCchHHHHHHHHHHHHhHH
Q psy11264 8 ALSSPEKLDRIGDYLYETASRD 29 (50)
Q Consensus 8 als~PeKLDRIG~YL~~rl~RD 29 (50)
.+++|+-+..||+.|++++...
T Consensus 64 ~~~~p~~~~~l~~~la~~i~~~ 85 (234)
T 3m3h_A 64 TLSYPKVRQTIAAGLEELIKEH 85 (234)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999998764
No 16
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=24.52 E-value=65 Score=18.10 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=15.7
Q ss_pred CcceeeecccCCchHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~ 24 (50)
|-|++ |+=+|+|+|.+=+-|.+
T Consensus 1 Mk~I~--aII~~~~~~~v~~aL~~ 22 (112)
T 2eg2_A 1 MKKIE--AIIKPFKLDEVKDALVE 22 (112)
T ss_dssp CEEEE--EEECGGGHHHHHHHHHH
T ss_pred CEEEE--EEECHHHHHHHHHHHHH
Confidence 44454 45599999998877764
No 17
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=23.93 E-value=54 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred cCCchHHHHHHHHHHHHhHHhhh
Q psy11264 10 SSPEKLDRIGDYLYETASRDISR 32 (50)
Q Consensus 10 s~PeKLDRIG~YL~~rl~RDl~R 32 (50)
..|-|.||-|.|.+.-+...|.-
T Consensus 273 KDptKVDRSaAYaAR~vAKniVA 295 (399)
T 3iml_A 273 KDPSKVDRSAAYAGRYVAKNIVA 295 (399)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHh
Confidence 46999999999999999988865
No 18
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=23.40 E-value=42 Score=17.36 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred eecccCCchHHHHHHHHHH
Q psy11264 6 FYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 6 fYals~PeKLDRIG~YL~~ 24 (50)
|..++++|-++.|..||..
T Consensus 82 ~~~l~~~~ei~~l~aYl~s 100 (103)
T 1i54_A 82 FAGIKKKGERQDLVAYLKS 100 (103)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHH
Confidence 5557778999999999964
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=23.32 E-value=65 Score=20.39 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeec
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQI 46 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i 46 (50)
||-.+......+-+++.+ . |...|+++|.+
T Consensus 184 LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~ 213 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAE-E-GKTMVVVTHEM 213 (262)
T ss_dssp SCHHHHHHHHHHHHHHHH-T-TCCEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCH
Confidence 566666555666667744 3 77889999975
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.92 E-value=74 Score=20.37 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeec
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQI 46 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i 46 (50)
||-.+......+-+++.+ . |...|+++|.+
T Consensus 190 LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~ 219 (263)
T 2olj_A 190 LDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEM 219 (263)
T ss_dssp SCHHHHHHHHHHHHHHHH-T-TCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCH
Confidence 566666666666667744 3 78889999975
No 21
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=22.89 E-value=48 Score=20.78 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHhHH
Q psy11264 13 EKLDRIGDYLYETASRD 29 (50)
Q Consensus 13 eKLDRIG~YL~~rl~RD 29 (50)
--.|-+.+||+.||.=|
T Consensus 32 ATVDHLsKYLA~Rl~Le 48 (111)
T 3gs2_A 32 ATVDHLSKYLAVRLALE 48 (111)
T ss_dssp CBHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHH
Confidence 34789999999999988
No 22
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=22.80 E-value=24 Score=21.42 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=14.8
Q ss_pred ecccCCchHHHHHHHHHH
Q psy11264 7 YALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 7 Yals~PeKLDRIG~YL~~ 24 (50)
-|+=+|||||.+-+-|.+
T Consensus 10 ~AIIrp~kld~V~~AL~~ 27 (114)
T 3m05_A 10 IAIVQDKDANYLSDQFID 27 (114)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHH
Confidence 477889999999887765
No 23
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=22.38 E-value=76 Score=17.75 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=15.7
Q ss_pred CcceeeecccCCchHHHHHHHHHH
Q psy11264 1 MDKLTFYALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 1 M~KLtfYals~PeKLDRIG~YL~~ 24 (50)
|-|+. |+=.|+|+|.+=+-|.+
T Consensus 1 Mk~I~--aII~~~~~~~v~~aL~~ 22 (112)
T 1hwu_A 1 MKQVT--AIIKPFKLDEVRESLAE 22 (112)
T ss_dssp CEEEE--EEECGGGHHHHHHHHHH
T ss_pred CEEEE--EEECHHHHHHHHHHHHH
Confidence 44444 45699999998877764
No 24
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=22.31 E-value=54 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=19.4
Q ss_pred eeecccCCchHHHHHHHHHHHHhH
Q psy11264 5 TFYALSSPEKLDRIGDYLYETASR 28 (50)
Q Consensus 5 tfYals~PeKLDRIG~YL~~rl~R 28 (50)
.||.+..++.|..|-+.|.+++++
T Consensus 175 ~~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 175 HFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp HEEEESSGGGGGGGHHHHHHHHTC
T ss_pred cEEEeCCHHHHHHHHHHHHHhhee
Confidence 477788999999998888777753
No 25
>2jxz_A Calcitonin; A-helix, amidation, cleavage on PAIR of basic residues, HORM secreted; NMR {Synthetic}
Probab=21.89 E-value=72 Score=15.93 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHhhhh
Q psy11264 18 IGDYLYETASRDISRK 33 (50)
Q Consensus 18 IG~YL~~rl~RDl~R~ 33 (50)
.+..+.+||+.+|+|-
T Consensus 4 ~sTCvt~~la~~L~rs 19 (33)
T 2jxz_A 4 LSTCMLGTLTQDFHKF 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3567889999999985
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=21.77 E-value=94 Score=19.44 Aligned_cols=31 Identities=6% Similarity=-0.085 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeecc
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQIP 47 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i~ 47 (50)
||-.+......+-+++.+ . |...|+++|.+.
T Consensus 184 LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~ 214 (257)
T 1g6h_A 184 VAPGLAHDIFNHVLELKA-K-GITFLIIEHRLD 214 (257)
T ss_dssp CCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCS
T ss_pred CCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHH
Confidence 455555555555566643 3 788899999864
No 27
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=21.72 E-value=91 Score=21.63 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=20.9
Q ss_pred HHHHHHHHhHHhhhh----ccCceeEEeeeecccC
Q psy11264 19 GDYLYETASRDISRK----RTQCSSTISTHQIPRK 49 (50)
Q Consensus 19 G~YL~~rl~RDl~R~----R~~~v~iis~~~i~~~ 49 (50)
-+.+++++...+... |.....+.|.|.||.+
T Consensus 170 I~a~a~~I~~~l~~~~~~~~~~~~LlfSaHgiP~~ 204 (359)
T 3hcn_A 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMS 204 (359)
T ss_dssp HHHHHHHHHHHHTTSCTTTGGGCEEEEEEECCBHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcEEEEEcCCChHh
Confidence 355666666666543 3445899999999953
No 28
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=21.70 E-value=67 Score=16.06 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHhhhh
Q psy11264 19 GDYLYETASRDISRK 33 (50)
Q Consensus 19 G~YL~~rl~RDl~R~ 33 (50)
+..+.+||+.+|+|-
T Consensus 5 sTCvt~~la~~L~rs 19 (33)
T 1bku_A 5 STCVLGKLSQELHKL 19 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc
Confidence 567889999999985
No 29
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=21.70 E-value=51 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.0
Q ss_pred cccCCchHHHHHHHHHHHHhHH
Q psy11264 8 ALSSPEKLDRIGDYLYETASRD 29 (50)
Q Consensus 8 als~PeKLDRIG~YL~~rl~RD 29 (50)
.+++|+-+..||+.|++++...
T Consensus 76 ~l~~p~~~~~l~~~la~~i~~~ 97 (243)
T 3dez_A 76 TLSYPETRTLIENGFVETIKEA 97 (243)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhh
Confidence 3789999999999999998654
No 30
>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.00A {Ralstonia eutropha} SCOP: c.56.5.9
Probab=20.33 E-value=82 Score=21.15 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=23.8
Q ss_pred chHHHHHHHH---HHHHhHHhhh--hccCceeEEeeeeccc
Q psy11264 13 EKLDRIGDYL---YETASRDISR--KRTQCSSTISTHQIPR 48 (50)
Q Consensus 13 eKLDRIG~YL---~~rl~RDl~R--~R~~~v~iis~~~i~~ 48 (50)
|...||..|= .+.|..-|.+ .++|.+.+|+.|.+|.
T Consensus 136 e~~~Ri~~~~~PYH~aL~~~l~~~~a~~g~~vlid~HS~~~ 176 (290)
T 2q7s_A 136 EVQRRINRYYRPYHAALTEAVEGAYQRFGAVWHLNLHSMPN 176 (290)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHSCEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecCCCC
Confidence 4555666531 2455555543 4789999999999975
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=20.32 E-value=85 Score=19.68 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHhhhhccCceeEEeeeec
Q psy11264 15 LDRIGDYLYETASRDISRKRTQCSSTISTHQI 46 (50)
Q Consensus 15 LDRIG~YL~~rl~RDl~R~R~~~v~iis~~~i 46 (50)
||..+......+-+++.++ .|...|+++|.+
T Consensus 157 LD~~~~~~~~~~l~~l~~~-~g~tvi~vtHd~ 187 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQRE-FDVPILHVTHDL 187 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HTCCEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 5666666666666666543 366788889975
No 32
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.14 E-value=25 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.0
Q ss_pred ecccCCchHHHHHHHHHH
Q psy11264 7 YALSSPEKLDRIGDYLYE 24 (50)
Q Consensus 7 Yals~PeKLDRIG~YL~~ 24 (50)
=|+-.|+|||.+=+.|.+
T Consensus 27 ~aIIrP~kld~V~daL~~ 44 (120)
T 3ce8_A 27 VLIAQNDIKDDIVDTLIE 44 (120)
T ss_dssp EEEEEGGGHHHHHHHHTT
T ss_pred EEEeCHHHHHHHHHHHHh
Confidence 367789999999998865
No 33
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=20.07 E-value=71 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.2
Q ss_pred cCCchHHHHHHHHHHHHhHHhhh
Q psy11264 10 SSPEKLDRIGDYLYETASRDISR 32 (50)
Q Consensus 10 s~PeKLDRIG~YL~~rl~RDl~R 32 (50)
..|-|.||-|.|.+.-+...|.-
T Consensus 290 KDptKVDRSaAYaAR~vAKniVA 312 (415)
T 3so4_A 290 KDSSKVDRSGAYCARWIAKSLVH 312 (415)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHHHHH
Confidence 46999999999999999888865
No 34
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=20.05 E-value=26 Score=21.13 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=18.1
Q ss_pred eeecccCCchHHHHHHHHHHHHhHHh
Q psy11264 5 TFYALSSPEKLDRIGDYLYETASRDI 30 (50)
Q Consensus 5 tfYals~PeKLDRIG~YL~~rl~RDl 30 (50)
+|||.+.|||++ .+.+-...|-||+
T Consensus 65 ~~~~~~g~~~ip-~~~f~~W~lIrd~ 89 (94)
T 1bax_A 65 DYYNTFGPEKVP-VTAFSYWNLIKEL 89 (94)
T ss_pred HHHHHcCCCcCC-cchHHHHHHHHHH
Confidence 578888888886 5666677777765
Done!