RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11264
         (50 letters)



>gnl|CDD|200549 cd10923, CE4_COG5298, Putative NodB-like catalytic domain of
          uncharacterized proteins found in bacteria.  This
          family corresponds to a group of uncharacterized
          bacterial proteins with high sequence similarity to the
          catalytic domain of the six-stranded barrel rhizobial
          NodB-like proteins, which remove N-linked or O-linked
          acetyl groups from cell wall polysaccharides and belong
          to the larger carbohydrate esterase 4 (CE4)
          superfamily. Some family members contain an additional
          copper amine oxidase N-terminal domain.
          Length = 250

 Score = 26.5 bits (59), Expect = 0.44
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 8  ALSSPEKLDRIGDYLYE 24
              PEKL  I DYLY 
Sbjct: 12 PGGDPEKLKEIADYLYS 28


>gnl|CDD|220566 pfam10096, DUF2334, Uncharacterized protein conserved in bacteria
          (DUF2334).  This domain, found in various hypothetical
          bacterial proteins, has no known function.
          Length = 238

 Score = 26.2 bits (58), Expect = 0.64
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 8  ALSSPEKLDRIGDYLYE 24
           L   EKL  I DYLY+
Sbjct: 11 PLVDLEKLKEIADYLYK 27


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,366,170
Number of extensions: 135595
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 50
Length of database: 10,937,602
Length adjustment: 23
Effective length of query: 27
Effective length of database: 9,917,460
Effective search space: 267771420
Effective search space used: 267771420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)