RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11264
         (50 letters)



>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
          [TaxId: 1423]}
          Length = 309

 Score = 23.9 bits (51), Expect = 0.89
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 8  ALSSPEKLDRIGDYLYE-TASRDISRKRTQ 36
          A  +P K + I  Y       R    +  Q
Sbjct: 11 AYGTPYKEEDIERYYTHIRRGRKPEPEMLQ 40


>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 215

 Score = 23.1 bits (49), Expect = 1.7
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQ 36
           EKL ++   +    ++ ++  RT 
Sbjct: 176 EKLFKLAALMNTDTAKALAAHRTA 199


>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 216

 Score = 22.7 bits (48), Expect = 2.4
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQ 36
           EKL ++ D ++   ++ ++ +R Q
Sbjct: 176 EKLFKLKDLMHTPTAKKLAEERHQ 199


>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981
           {Bacillus thuringiensis [TaxId: 1428]}
          Length = 213

 Score = 22.3 bits (47), Expect = 3.1
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQ 36
           EKL ++ D +   A++  +  R +
Sbjct: 174 EKLLKLKDLMNTNAAKQEAEVRHR 197


>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
           {Bacillus halodurans [TaxId: 86665]}
          Length = 212

 Score = 22.0 bits (46), Expect = 4.3
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 13  EKLDRIGDYLYETASRDISRKRTQ 36
           EKL ++ D +     + ++++R  
Sbjct: 174 EKLFKLKDLMNTETGKQLAKERHV 197


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 167,551
Number of extensions: 4610
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 5
Length of query: 50
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 28
Effective length of database: 2,105,536
Effective search space: 58955008
Effective search space used: 58955008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)