BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11265
(945 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 7/133 (5%)
Query: 297 FHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLV 356
FH+ T D + T+LDDSR GKPM+L++GKKFKL VWET+V M GEI++F+CD V
Sbjct: 35 FHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHV 94
Query: 357 SAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTFTIE 411
YP V+K+LR+ A + +RHCCGV QM G+ DL+ L + Q L F +E
Sbjct: 95 VLYPLVAKSLRNIA--VGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHME 152
Query: 412 LLQVESPEEYEQE 424
+L+VESP Y+Q+
Sbjct: 153 MLKVESPGTYQQD 165
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 832 KLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGV-QMHT----GYEDLNELLKKSQDLTF 886
K V YP V+K+LR+ A + +RHCCGV QM G+ DL+ L + Q L F
Sbjct: 92 KHVVLYPLVAKSLRNIA--VGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIF 149
Query: 887 TIE 889
+E
Sbjct: 150 HME 152
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl
Coa Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl
Coa Synthase I
Length = 478
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 63/75 (84%)
Query: 8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
+VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+TVV N
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQN 83
Query: 68 LMKRYELDYAQIGQL 82
LM+R L Y IG+L
Sbjct: 84 LMERNNLSYDCIGRL 98
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 107/249 (42%), Gaps = 92/249 (36%)
Query: 549 LSIQCYLGALDACYQGYRAKA-----AKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLA 603
LSIQCYL ALD CY Y K + K+ +L DF ++FH+PYCKLVQKSLA
Sbjct: 228 LSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLA--- 284
Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
R+ NDF++ +R
Sbjct: 285 ----------------------------------------------RMLLNDFLNDQNRD 298
Query: 664 E---YEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIE 720
+ Y G EAF +K LEDTYF+RD +E
Sbjct: 299 KNSIYSGLEAFGDVK-LEDTYFDRD---------------------------------VE 324
Query: 721 QYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSY 780
+ FM S + F + TK L ++N GNMYT S+YG L S+L Q ++L G RIG+FSY
Sbjct: 325 KAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAG-KRIGVFSY 383
Query: 781 GSDNIKALF 789
GS L+
Sbjct: 384 GSGLAATLY 392
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 51/57 (89%)
Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
+VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+TV
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTV 80
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 51/57 (89%)
Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTL 549
+VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+T+
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTV 80
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 144 SMFSIHINRAAV--DTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
+++S+ + + A L + L D++ RLD+R V P F + +++ H +
Sbjct: 390 TLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNY-- 447
Query: 202 ETPPG--EYLFDGSYYLESIDDFHRRHYKK 229
P G + LF+G++YL +D+ HRR Y +
Sbjct: 448 -IPQGSIDSLFEGTWYLVRVDEKHRRTYAR 476
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 109/246 (44%), Gaps = 86/246 (34%)
Query: 549 LSIQCYLGALDACYQGYRAKAA---KLTG--KELSLGDFDAVLFHTPYCKLVQKSLARLA 603
LSIQCYL ALD CY YR K K G + +L D ++FHTP+CK+VQKSLA
Sbjct: 209 LSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLA--- 265
Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
RL +NDF+SA+ T
Sbjct: 266 ----------------------------------------------RLMFNDFLSASSDT 279
Query: 664 EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYF 723
+ + Y+G EAF +K LEDTY N+D+++
Sbjct: 280 Q------------------------------TSLYKGLEAFGGLK-LEDTYTNKDLDKAL 308
Query: 724 MSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSD 783
+ S+ F++ TK LYL+ GNMYT SLYGCL SLL + L G SRIG FSYGS
Sbjct: 309 LKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAG-SRIGAFSYGSG 367
Query: 784 NIKALF 789
+ F
Sbjct: 368 LAASFF 373
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVV 65
P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLTVV
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVV 62
Query: 66 SNLMKRYELDYAQIGQL 82
LM+R +L + +G+L
Sbjct: 63 QRLMERIQLPWDSVGRL 79
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 52/59 (88%)
Query: 237 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLTV
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 52/59 (88%)
Query: 491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTL 549
P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLT+
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 144 SMFSIHINRAAV--DTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
S FS +++ A L LV+ SD+ RL +R+ V P EFT I+ +++ HK F
Sbjct: 371 SFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNF-- 428
Query: 202 ETPPGEY--LFDGSYYLESIDDFHRRHYKK 229
+PPG+ LF G++YLE +D+ HRR Y +
Sbjct: 429 -SPPGDTNSLFPGTWYLERVDEQHRRKYAR 457
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+ V+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 NLMKRYELDYAQIGQL 82
+L+++Y++D QIG+L
Sbjct: 62 SLLEKYKIDPKQIGRL 77
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
LS CYL ALD+CY+ K KL GKE S+ D D +FH+PY KLVQKS ARL YNDF+
Sbjct: 207 LSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFL 266
Query: 609 ---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRT 649
S+ D + E ++ + +L+++Y +RD+E+ +S L +T
Sbjct: 267 RNASSIDEAAKEKFTPYSSL-SLDESYQSRDLEK--VSQQLAKT 307
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 238 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHF 297
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ +++ F
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDV----ISMSF 57
Query: 298 HFVTQL 303
+ VT L
Sbjct: 58 NAVTSL 63
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISM 55
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
+MFS+ + + + + DV +L AR P +F + K H+Y +
Sbjct: 363 TMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETM---KLMEHRYGAKEFV 419
Query: 204 PPGEYLFD----GSYYLESIDDFHRRHYKK 229
E + D G+YYL+ +D +RR Y K
Sbjct: 420 TSKEGILDLLAPGTYYLKEVDSLYRRFYGK 449
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+ V+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 NLMKRYELDYAQIGQL 82
+L+++Y++D QIG+L
Sbjct: 62 SLLEKYKIDPKQIGRL 77
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
LS CYL ALD+CY+ K KL GKE S+ D D +FH+PY KLVQKS ARL YNDF+
Sbjct: 207 LSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFL 266
Query: 609 ---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRT 649
S+ D + E ++ + +L+++Y +RD+E+ +S L +T
Sbjct: 267 RNASSIDEAAKEKFTPYSSL-SLDESYQSRDLEK--VSQQLAKT 307
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 238 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHF 297
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ +++ F
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDV----ISMSF 57
Query: 298 HFVTQL 303
+ VT L
Sbjct: 58 NAVTSL 63
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISM 55
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
+MFS+ + + + + DV +L AR P +F + K H+Y +
Sbjct: 363 TMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETM---KLMEHRYGAKEFV 419
Query: 204 PPGEYLFD----GSYYLESIDDFHRRHYKK 229
E + D G+YYL+ +D +RR Y K
Sbjct: 420 TSKEGILDLLAPGTYYLKEVDSLYRRFYGK 449
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 750 TPSLYG-CLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADL 808
TP L C L+++ +E L S I L Y DN+KA F+RGKAH VWN +EA AD
Sbjct: 66 TPLLLNYCQCKLVVEEYYEVLDHCSSI-LNKY-DDNVKAYFKRGKAHAAVWNAQEAQADF 123
Query: 809 KRVAALDSTMLGPVSSMLKQLSSKL 833
+V LD + VS L+ L +++
Sbjct: 124 AKVLELDPALAPVVSRELQALEARI 148
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLT-YD 934
E+P +W +L+ P+LLNY QCKL ++YY V++H +++L YD
Sbjct: 51 EQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYD 97
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 424 ESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQ 474
+ W +T EK ++P + ++GN LY+ G+++ A KY A+ L+ L +K+
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKE 51
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 94 ESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 142
+ W +T EK ++P + ++GN LY+ G+++ A KY A+ L+ L +
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQM 49
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 750 TPSLYG-CLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADL 808
TP L C L+++ +E L S I L Y DN+KA F+RGKAH VWN +EA AD
Sbjct: 60 TPLLLNYCQCKLVVEEYYEVLDHCSSI-LNKY-DDNVKAYFKRGKAHAAVWNAQEAQADF 117
Query: 809 KRVAALDSTMLGPVSSMLKQLSSKL 833
+V LD + VS L+ L +++
Sbjct: 118 AKVLELDPALAPVVSRELQALEARI 142
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLT-YD 934
E+P +W +L+ P+LLNY QCKL ++YY V++H +++L YD
Sbjct: 45 EQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYD 91
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 432 EKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQ 474
EK ++P + ++GN LY+ G+++ A KY A+ L+ L +K+
Sbjct: 3 EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKE 45
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 102 EKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 142
EK ++P + ++GN LY+ G+++ A KY A+ L+ L +
Sbjct: 3 EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQM 43
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme
A Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
+ + D +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
+T +D +K+G
Sbjct: 63 ITD---------EDKKKIG 72
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 548 TLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDF 607
LS Y+ + + Y AK GK SL DF ++ FH P+ K+ +K+L + N
Sbjct: 199 ALSKDAYIRSFQQSWNEY----AKRQGK--SLADFASLCFHVPFTKMGKKALESIIDNAD 252
Query: 608 ISATD--RSQYEGA 619
+ + RS YE A
Sbjct: 253 ETTQERLRSGYEDA 266
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
+ + D +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
+T +D +K+G
Sbjct: 63 ITD---------EDKKKIG 72
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 548 TLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDF 607
LS Y+ + + Y AK GK SL DF ++ FH P+ K+ +K+L + N
Sbjct: 199 ALSKDAYIRSFQQSWNEY----AKRQGK--SLADFASLCFHVPFTKMGKKALESIIDNAD 252
Query: 608 ISATD--RSQYEGA 619
+ + RS YE A
Sbjct: 253 ETTQERLRSGYEDA 266
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 MKRYELDYAQIGQLL 83
+ + D +IG ++
Sbjct: 62 IT--DEDKKKIGMVI 74
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 300 VTQLCDSDNTILDDSRKLG 318
+T +D +K+G
Sbjct: 62 ITD---------EDKKKIG 71
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 53
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 548 TLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDF 607
LS Y+ + + Y AK GK SL DF ++ FH P+ K+ +K+L + N
Sbjct: 199 ALSKDAYIRSFQQSWNEY----AKRQGK--SLADFASLCFHVPFTKMGKKALESIIDNAD 252
Query: 608 ISATD--RSQYEGA 619
+ + RS YE A
Sbjct: 253 ETTQERLRSGYEDA 266
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And
Acetylated Cysteine
Length = 390
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 MKRYELDYAQIGQLL 83
+ + D +IG ++
Sbjct: 62 IT--DEDKKKIGMVI 74
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 300 VTQLCDSDNTILDDSRKLG 318
+T +D +K+G
Sbjct: 62 ITD---------EDKKKIG 71
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 53
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 548 TLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDF 607
LS Y+ + + Y AK GK SL DF ++ FH P+ K+ +K+L + N
Sbjct: 199 ALSKDAYIRSFQQSWNEY----AKRQGK--SLADFASLCFHVPFTKMGKKALESIIDNAD 252
Query: 608 ISATD--RSQYEGA 619
+ + RS YE A
Sbjct: 253 ETTQERLRSGYEDA 266
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 MKRYELDYAQIGQLL 83
+ + D +IG ++
Sbjct: 63 IT--DEDKKKIGMVI 75
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFHF 299
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 300 VTQLCDSDNTILDDSRKLG 318
+T +D +K+G
Sbjct: 63 ITD---------EDKKKIG 72
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 545
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 548 TLSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDF 607
LS Y+ + + Y AK GK SL DF ++ FH P+ K+ +K+L + N
Sbjct: 199 ALSKDAYIRSFQQSWNEY----AKRQGK--SLADFASLCFHVPFTKMGKKALESIIDNAD 252
Query: 608 ISATD--RSQYEGA 619
+ + RS YE A
Sbjct: 253 ETTQERLRSGYEDA 266
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 233 GTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
G+ +GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 1 GSTGSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 56
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 MKR 71
+ +
Sbjct: 68 LTK 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 56
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 278 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 320
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 223 KRTG--LDFADYDALAFHIPYTKMGKKAL 249
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 233 GTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
G+ +GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 1 GSTGSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 56
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 MKR 71
+ +
Sbjct: 68 LTK 70
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 56
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 278 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 320
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 223 KRTG--LDFADYDALAFHIPYTKMGKKAL 249
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 81
Query: 69 MKR 71
+ +
Sbjct: 82 LTK 84
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 484 PIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
P SH +GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 15 PRGSHM---TIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 70
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 70
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 292 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 334
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 237 KRTG--LDFADYDALAFHIPYTKMGKKAL 263
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 MKR 71
+ +
Sbjct: 63 LTK 65
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 273 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 315
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 218 KRTG--LDFADYDALAFHIPYTKMGKKAL 244
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 MKR 71
+ +
Sbjct: 63 LTK 65
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 274 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 316
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 219 KRTG--LDFADYDALAFHIPYTKMGKKAL 245
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSNL 68
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI + +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 MKR 71
+ +
Sbjct: 63 LTK 65
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDI 51
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L+SLL L ++IGLFSYGS + F
Sbjct: 273 VGNLYTGSLYLGLISLLENA--TTLTAGNQIGLFSYGSGAVAEFF 315
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 571 KLTGKELSLGDFDAVLFHTPYCKLVQKSL 599
K TG L D+DA+ FH PY K+ +K+L
Sbjct: 218 KRTG--LDFADYDALAFHIPYTKMGKKAL 244
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 36/119 (30%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDKSLVS 357
H+ L +D + D SR GKP + +G+ + W+ V MS+G+ +K VC
Sbjct: 26 HYTGTL--ADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVC------ 77
Query: 358 AYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVE 416
S + G + H G ++ + LTF +ELL+VE
Sbjct: 78 ----------------------SPDYAYGSRGHPG------VIPPNATLTFDVELLRVE 108
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
T H+ L D D SR KP + VLGK+ + WE V MS+G+ +K
Sbjct: 21 TCVVHYTGMLEDGKK--FDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D +D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D +D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 405 DLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
DL + +E++ + +E + S +T E++ + + K DGN+L+K ++ A+ +Y A+
Sbjct: 148 DLLYEVEVIGFDETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAI 206
Query: 465 GYL 467
Y+
Sbjct: 207 AYM 209
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 98 LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL 137
+T E++ + + K DGN+L+K ++ A+ +Y A+ Y+
Sbjct: 170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM 209
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 105 ASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+S+ +L+++GN L+K G+ GAL Y+ ALG +H NRAA
Sbjct: 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAA 73
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 435 ASIPKLKEDGNTLYKAGNIQGALDKYSTALG 465
+S+ +L+++GN L+K G+ GAL Y+ ALG
Sbjct: 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG 56
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 27 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 76
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + WE V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL 74
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAAL 814
S+N K LFRRG+AH+ V + E A AD ++V L
Sbjct: 227 SNNEKGLFRRGEAHLAVNDFELARADFQKVLQL 259
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 90 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 138
E +ESW++ EKL +KE G +K G + AL +Y + +LE
Sbjct: 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 420 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
E +ESW++ EKL +KE G +K G + AL +Y + +LE
Sbjct: 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 784 NIKALFRRGKAHMNVWNCEEAGADLK 809
N KALFRR KA + W +EA DLK
Sbjct: 96 NEKALFRRAKARIAAWKLDEAEEDLK 121
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 883 DLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVL 931
D EKP + +W +L+ IP+ N SQC L+ D + E ++ VL
Sbjct: 42 DTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 429 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQ 474
E +KL S+ L++ GN L+ + + A+D Y AL L+ L+L++
Sbjct: 3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE 48
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 99 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 142
E +KL S+ L++ GN L+ + + A+D Y AL L+ L+L
Sbjct: 3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL 46
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + W+ V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKL 74
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 307 DNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
D D SR GKP Q LG ++ W+ V M++GE + F
Sbjct: 56 DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF 98
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + W V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKL 74
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 96 WQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL-------EQLMLNSMFSI 148
+ T+ EK+ S +KE+GN +K I A+ KY AL + +Q++L+ +I
Sbjct: 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86
Query: 149 HI 150
I
Sbjct: 87 EI 88
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 426 WQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYL 467
+ T+ EK+ S +KE+GN +K I A+ KY AL +
Sbjct: 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF 68
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 90 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 138
E +ESW++ EKL +KE G +K G A+ +Y + +LE
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE 299
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 420 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
E +ESW++ EKL +KE G +K G A+ +Y + +LE
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE 299
>pdb|2L3W|A Chain A, Solution Nmr Structure Of The Pbs Linker Domain Of
Phycobilisome Rod Linker Polypeptide From Synechococcus
Elongatus, Northeast Structural Genomics Consortium
Target Snr168a
Length = 143
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 605 NDFISATDRSQYEGAEAFAHIKNLEDTYFNRDI-------EQYFMSHNLYRTRLAYNDFI 657
ND++ +T+R AE+ + F R + E++F HN R +F
Sbjct: 28 NDYVMSTER--LTSAESLLRGGEISVRDFVRAVALSELYREKFF--HNNAHNRFIELNFK 83
Query: 658 SATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLE 711
R Y+ AE AH ++ DI Y S TE G + + LE
Sbjct: 84 HLLGRAPYDQAEVAAHAATYHSHGYDADINSYIDSAEYTESFGDNVVPYFRGLE 137
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 703 AFAHIKNLED--TYFNRDIEQYFMSHSKQSFERLTKPGLYLANLI 745
AF +LED T F+R I+ Y ++ KQ FE++ G+YL L+
Sbjct: 263 AFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMV-SGMYLGELV 306
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 703 AFAHIKNLED--TYFNRDIEQYFMSHSKQSFERLTKPGLYLANLI 745
AF +LED T F+R I+ Y ++ KQ FE++ G+YL L+
Sbjct: 263 AFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMV-SGMYLGELV 306
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 90 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 138
E +ESW++ EKL +KE G +K G A+ +Y + +LE
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLE 299
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 420 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
E +ESW++ EKL +KE G +K G A+ +Y + +LE
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLE 299
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 16/155 (10%)
Query: 517 DQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRAKAAKLTGK- 575
D+V+A IGL A G +D ++I + + G L A G + A TG
Sbjct: 29 DRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLLVAAGILSAAALGTQTSVADATGPG 88
Query: 576 ------------ELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAE--- 620
E++ F VL T LV++ +A ++ T S G +
Sbjct: 89 FTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPEV 148
Query: 621 AFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYND 655
+ AH++ L T N + ++ A N+
Sbjct: 149 SVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNE 183
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
TV H+V L + T D SR G LG+ ++ W+ V M+ GE+++F
Sbjct: 35 TVKVHYVGTL--ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF 88
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 893 DEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPEGT 938
D D KL + + +LN CKL D+ ++ L DP T
Sbjct: 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 307
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAAL 814
S+N K L RRG+AH+ V + E A AD ++V L
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 90 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 138
E +ESW+ EKL +KE G +K G + AL +Y + +LE
Sbjct: 130 EKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 420 EYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
E +ESW+ EKL +KE G +K G + AL +Y + +LE
Sbjct: 130 EKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 389 MHTGYED-LNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTL 447
+++G D +++ +++ +DL +E + E E YE L +E ++ PK+ E
Sbjct: 144 IYSGLSDQIDDTVEEDEDLYDCVENEEAEGDEIYED----LMRSEPVSMPPKMTEYDKRC 199
Query: 448 YKAGNIQGALDKYSTALGYLEQLMLKQTFVNRTVKP 483
IQ +KY+ LG ++Q LK + R +KP
Sbjct: 200 CCLREIQQTEEKYTDTLGSIQQHFLKP--LQRFLKP 233
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 298 HFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKF 349
H+ L D D SR KP + +LGK+ + +E V MS+G+ +K
Sbjct: 25 HYTGML--EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKL 74
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 753 LYGCLVSLLIQTPWE--RLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKR 810
LY CLV++++ P E R++ L + GS +AL R AGA ++
Sbjct: 95 LYACLVAVMVGGPGEHHRVESAVAEQLATGGS---QALVR-----------SSAGALVEG 140
Query: 811 VAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRD-AAKHSADGTE 856
+ ALD+ + V+ ++ L+ K+V+ T+ D A AD TE
Sbjct: 141 LRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTE 187
>pdb|2XEC|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
Length = 273
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 753 LYGCLVSLLIQTPWE--RLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKR 810
LY CLV++++ P E R++ L + GS +AL R AGA ++
Sbjct: 95 LYACLVAVMVGGPGEHHRVESAVAEQLATGGS---QALVR-----------SSAGALVEG 140
Query: 811 VAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRD-AAKHSADGTE 856
+ ALD+ + V+ ++ L+ K+V+ T+ D A AD TE
Sbjct: 141 LRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTE 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,321,560
Number of Sequences: 62578
Number of extensions: 1207833
Number of successful extensions: 2949
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2784
Number of HSP's gapped (non-prelim): 155
length of query: 945
length of database: 14,973,337
effective HSP length: 108
effective length of query: 837
effective length of database: 8,214,913
effective search space: 6875882181
effective search space used: 6875882181
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)