RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11265
(945 letters)
>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase,
eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA
synthase is the first step of isopentenyl pyrophosphate
(IPP) biosynthesis via the mevalonate pathway. This
pathway is found mainly in eukaryotes, but also in
archaea and some bacteria. This model is specific for
eukaryotes.
Length = 457
Score = 164 bits (418), Expect = 1e-43
Identities = 90/246 (36%), Positives = 113/246 (45%), Gaps = 86/246 (34%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKE-----LSLGDFDAVLFHTPYCKLVQKSLARLA 603
LSIQCYL ALD CY+ Y K K GK +L DFD ++FH+PYCKLVQKSLARL
Sbjct: 208 LSIQCYLSALDRCYKSYCKKIEKQWGKSGSDRKFTLDDFDYMIFHSPYCKLVQKSLARLL 267
Query: 604 YNDFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRT 663
YNDF+ S+TD +
Sbjct: 268 YNDFLRNP----------------------------------------------SSTDTS 281
Query: 664 EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYF 723
YEG EA + +K LEDTY +RD+E+ F
Sbjct: 282 LYEGLEALSGLK-LEDTYT---------------------------------DRDLEKAF 307
Query: 724 MSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSD 783
M SK+ F++ TKP L + +GNMYT SLYGCL SLL + L G R+G+FSYGS
Sbjct: 308 MKASKELFDKKTKPSLLVPTQVGNMYTASLYGCLASLLSSKSAQELAG-KRVGMFSYGSG 366
Query: 784 NIKALF 789
++F
Sbjct: 367 LAASMF 372
Score = 154 bits (390), Expect = 4e-40
Identities = 60/78 (76%), Positives = 69/78 (88%)
Query: 5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 64
WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV
Sbjct: 1 WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV 60
Query: 65 VSNLMKRYELDYAQIGQL 82
VS LM+RY +DY QIG+L
Sbjct: 61 VSKLMERYNIDYDQIGRL 78
Score = 127 bits (321), Expect = 4e-31
Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 19/103 (18%)
Query: 236 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV
Sbjct: 1 WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV 60
Query: 296 HFHFVTQLCDSDN--------------TILDDSRKLGKP-MQL 323
V++L + N TI+D S+ + MQL
Sbjct: 61 ----VSKLMERYNIDYDQIGRLEVGTETIIDKSKSVKTVLMQL 99
Score = 124 bits (314), Expect = 3e-30
Identities = 47/59 (79%), Positives = 53/59 (89%)
Query: 490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
WP++VGIL +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLT
Sbjct: 1 WPKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLT 59
Score = 77.9 bits (192), Expect = 6e-15
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 144 SMFSIHI--NRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
SMFS+ + + + L L+ LSD+++RLD+R V P EF + +++ HK F
Sbjct: 370 SMFSLRVSQDASPGSALDKLIASLSDLKNRLDSRHCVAPEEFEETMELREQAHHKKNF-- 427
Query: 202 ETPPG--EYLFDGSYYLESIDDFHRRHYKK 229
TP G + LF G++YLE +D HRR Y +
Sbjct: 428 -TPQGSIDSLFPGTWYLERVDSKHRRSYAR 456
>gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A
synthase C terminal.
Length = 282
Score = 154 bits (392), Expect = 5e-42
Identities = 87/244 (35%), Positives = 106/244 (43%), Gaps = 83/244 (34%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLT---GKELSLGDFDAVLFHTPYCKLVQKSLARLAYN 605
LS+QCYL ALD+CY+ Y K K T G + L DFD V+FH+PYCKLVQKSLAR
Sbjct: 34 LSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLVQKSLAR---- 89
Query: 606 DFISATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEY 665
L YNDF+ +
Sbjct: 90 ---------------------------------------------LLYNDFLRNPSSDKG 104
Query: 666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS 725
G YE EA +K LED+Y +RD+E+ FM
Sbjct: 105 NGV-----------------------------YEKLEALGGLK-LEDSYTDRDLEKAFMQ 134
Query: 726 HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI 785
SK F++ TKP L L +GNMYT SLY L SLL + L G RIG+FSYGS
Sbjct: 135 LSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAG-KRIGMFSYGSGLA 193
Query: 786 KALF 789
+LF
Sbjct: 194 ASLF 197
Score = 72.4 bits (178), Expect = 1e-13
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 144 SMFSIHI--NRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
S+FS+ + + + L+ L+TK+ D++++LD+R V P EF + +++ HK F
Sbjct: 195 SLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETMELREQAHHKKNF-- 252
Query: 202 ETPPG--EYLFDGSYYLESIDDFHRRHYKK 229
TP G + LF G+YYL ++D +RR Y +
Sbjct: 253 -TPQGSIDSLFPGTYYLTNVDSLYRRSYAR 281
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A
synthase N terminal.
Length = 171
Score = 137 bits (347), Expect = 2e-37
Identities = 55/75 (73%), Positives = 63/75 (84%)
Query: 8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
+VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTVV
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQK 60
Query: 68 LMKRYELDYAQIGQL 82
LM+R LDY IG+L
Sbjct: 61 LMERNNLDYDCIGRL 75
Score = 114 bits (287), Expect = 2e-29
Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHFH 298
+VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLTV
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTV--- 57
Query: 299 FVTQLCDSDNTILDDSRKL 317
V +L + +N D +L
Sbjct: 58 -VQKLMERNNLDYDCIGRL 75
Score = 111 bits (280), Expect = 2e-28
Identities = 44/56 (78%), Positives = 50/56 (89%)
Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
+VGI+ +E YFPSQYVDQ ELEK+D VSAGKYTIGLGQ KMGFC+D EDINS+CLT
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLT 56
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase.
Length = 459
Score = 124 bits (313), Expect = 4e-30
Identities = 45/77 (58%), Positives = 57/77 (74%)
Query: 6 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVV 65
P+NVGIL +E YFP V Q LE HD VS GKYTIGLGQ M FC+D+ED+ S+ LTVV
Sbjct: 2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVV 61
Query: 66 SNLMKRYELDYAQIGQL 82
+L+++Y +D QIG+L
Sbjct: 62 KSLLEKYNIDPKQIGRL 78
Score = 103 bits (258), Expect = 4e-23
Identities = 37/59 (62%), Positives = 43/59 (72%)
Query: 237 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
P+NVGIL +E YFP V Q LE HD VS GKYTIGLGQ M FC+D+ED+ S+ LTV
Sbjct: 2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTV 60
Score = 100 bits (252), Expect = 2e-22
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 491 PENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
P+NVGIL +E YFP V Q LE HD VS GKYTIGLGQ M FC+D+ED+ S+ LT
Sbjct: 2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLT 59
Score = 93.3 bits (232), Expect = 9e-20
Identities = 68/245 (27%), Positives = 90/245 (36%), Gaps = 88/245 (35%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
LS CYL ALD+CY+ + K KL GK+ S+ D D +FH PY KLVQKS A
Sbjct: 208 LSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDADYFVFHAPYNKLVQKSFA-------- 259
Query: 609 SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFI---SATDRTEY 665
RL YNDF S+ D
Sbjct: 260 -----------------------------------------RLVYNDFQRNASSVDEDAK 278
Query: 666 EGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMS 725
E FA + +++Y NRD+E+
Sbjct: 279 EKLAPFA----------------------------------GLSSDESYQNRDLEKVSQQ 304
Query: 726 HSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNI 785
+K ++ +P + +GNMYT SLY L SL+ L G RI +FSYGS
Sbjct: 305 VAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKH-SELAG-KRILMFSYGSGLT 362
Query: 786 KALFR 790
+F
Sbjct: 363 ATMFS 367
Score = 49.4 bits (118), Expect = 6e-06
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 144 SMFSIHINRA-AVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSE 202
+MFS+ ++ +L + + DV ++L +R V P +F L + H+Y +
Sbjct: 364 TMFSLRLHEGQHPFSLSNIAKVM-DVSEKLKSRHEVSPEKFVETLKLME---HRYGAKDF 419
Query: 203 TPPGE--YLFDGSYYLESIDDFHRRHYKKYEAGTA 235
P + L G+YYL +D +RR Y + +
Sbjct: 420 VPSKDVSLLAPGTYYLTEVDSLYRRFYDRKALNGS 454
>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type III and
polyketide synthases, type III, which include chalcone
synthase and related enzymes. They are characterized by
the utlization of CoA substrate primers, as well as the
nature of their active site residues.
Length = 324
Score = 91.0 bits (226), Expect = 9e-20
Identities = 72/342 (21%), Positives = 103/342 (30%), Gaps = 79/342 (23%)
Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQ 552
+VGI I Y P VD EL + V GKYT G+GQ M ED+ ++ + + +
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58
Query: 553 CYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLF-HTPYC---KLVQKSLARLAYNDFI 608
+ A + D ++ K LA L
Sbjct: 59 A-------------LERAG-----IDPDDIGLLIVATESPIDKGKSAATYLAELLGLTNA 100
Query: 609 SATDRSQ--YEGAEAFAHIKNLEDTYFNR-------DIEQY-FMSHNLYRTRLA------ 652
A D Q Y G A NL ++ R DI Y + L
Sbjct: 101 EAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLDEGSALEPTLGDGAAAM 160
Query: 653 --------YNDFISATDRT----------EYEGAEAFAHIKNLEDTYFNRDIEQYFMSHN 694
I +T T K + +
Sbjct: 161 LVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEA 220
Query: 695 RTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSH-------SKQSFERLTKPG-------LY 740
A K L+ + DI+ YF+ H + ++L P
Sbjct: 221 ---AHKLIAKVVRKALDRAGLSEDID-YFVPHQPNGKKILEAVAKKLGGPPEKASQTRWI 276
Query: 741 LANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
L +GNMY S+ L SLL +L+ R+ LFSYGS
Sbjct: 277 LLRRVGNMYAASILLGLASLLES---GKLKAGDRVLLFSYGS 315
Score = 88.6 bits (220), Expect = 6e-19
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
+VGI I Y P VD EL + V GKYT G+GQ M ED+ ++ +
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58
Query: 68 LMKRYELDYAQIGQLL 83
++R +D IG L+
Sbjct: 59 ALERAGIDPDDIGLLI 74
Score = 69.0 bits (169), Expect = 2e-12
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
+VGI I Y P VD EL + V GKYT G+GQ M ED+ ++ +
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEA 55
>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid
metabolism].
Length = 377
Score = 80.8 bits (200), Expect = 5e-16
Identities = 77/332 (23%), Positives = 104/332 (31%), Gaps = 76/332 (22%)
Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQ 552
+GI+GI Y P + EL + V K GLG + ED ++ +
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVE---- 57
Query: 553 CYLGALDACYQGYRAKAAK--LTGKELSLGDFDAVLFHT---PY-CKLVQKSLAR-LAYN 605
AA+ L ++ AV+ + P K +A L N
Sbjct: 58 ----------------AARNALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLN 101
Query: 606 DFISATDR--SQYEGAEAFAHIKNLEDTYFNR-------DIEQYFMSHNLYRTRLA---- 652
A D + Y G A ++ D QY L T A
Sbjct: 102 PSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYAPGDALEYTAGAGAVA 161
Query: 653 ----YNDFISA--TDRTEYEGAEAFAHIKNLEDTYFNRD----IEQYFMSHNRTEYEGAE 702
N I A Y + + Y D YF H +G
Sbjct: 162 FLIGKNPPIVAEFEGTGSY-TTDTPDFWRPDGQPYPYVDGRFSEPAYF-KHVENAAKG-- 217
Query: 703 AFAHIKNLEDTYFNRDIEQYFMSHS------KQSFERL------TKPGLYLANLIGNMYT 750
+ L F+ Y + H K++ + L KPGL IGN YT
Sbjct: 218 -YMEKTGLSPDDFD-----YIVFHQPNGKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYT 271
Query: 751 PSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
SL L SLL +L G RI LFSYGS
Sbjct: 272 GSLLLGLASLLDN---AKLPG-DRILLFSYGS 299
Score = 78.1 bits (193), Expect = 4e-15
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
+GI+GI Y P + EL + V K GLG + ED ++ + N
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61
Query: 68 LMKRYELDYAQIGQLL 83
+KR ++D ++IG ++
Sbjct: 62 ALKRADIDPSKIGAVI 77
Score = 59.6 bits (145), Expect = 3e-09
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSI 291
+GI+GI Y P + EL + V K GLG + ED ++
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTM 54
Score = 34.6 bits (80), Expect = 0.25
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRIL-AAKKENLHKYPFRSE 202
FSI + + K L L+ R + ++ KK L K +
Sbjct: 304 EAFSITVTDGIEERRKKL-----APTVLLEQRNRLSYIDYELYFKRRKKIRLGKDNEFYD 358
Query: 203 TPPGEYLFDGSYYLESIDDFHRRHYKK 229
+ YYLE IDD RR+
Sbjct: 359 SGD--------YYLEEIDDHFRRYRYV 377
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 48.0 bits (115), Expect = 6e-07
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
TV H+ +L D T+ D S+ GKP + LG + W+ + M +GE K
Sbjct: 10 TVTVHYTGKL--EDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPP 67
Query: 354 SLVSAY 359
L AY
Sbjct: 68 EL--AY 71
>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA
synthase, prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have
resulted from a separate lateral transfer event.
Length = 379
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 57
+GI I F+ P Y+D T L + V K+ IG+GQ KM EDI
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 288
+GI I F+ P Y+D T L + V K+ IG+GQ KM EDI
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 494 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI 542
+GI I F+ P Y+D T L + V K+ IG+GQ KM EDI
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDI 49
Score = 42.4 bits (100), Expect = 8e-04
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
S + YL A + + Y + LSL DF A FH P+ K+ K+L +
Sbjct: 198 YSNEQYLNAFENAWNDYAKR------TGLSLADFAAFCFHVPFTKMGLKALRHIL-KKNY 250
Query: 609 SATDRSQYEGAEAFAHIKN--LEDTYFNRDI 637
D ++N LE +NR++
Sbjct: 251 EDED----------ESVQNAYLESIIYNREV 271
Score = 40.1 bits (94), Expect = 0.005
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 745 IGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGSDNIKALF 789
+GN+YT SLY L SLL +E G +IGLFSYGS + F
Sbjct: 271 VGNLYTGSLYLGLASLLENA-FEDTTG-DKIGLFSYGSGAVAEFF 313
>gnl|CDD|213057 cd12088, helicase_insert_domain, helical domain inserted in
SF2-type helicase domain in Hef-, MDA5- and FancM-like
proteins. This helical domain can be found inserted in
a subset of SF2-type DEAD-box related helicases, like
archaeal Hef helicase, MDA5-like helicases and
FancM-like helicases. The exact function of this domain
is unknown, but seems to play a role in interaction with
nucleotides and/or the stabilization of the nucleotide
complex.
Length = 124
Score = 30.9 bits (70), Expect = 0.95
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 63 TVVSNLMKRYELDYAQIGQLLQVE-SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAG 121
T++S L++ E QI LLQ + ++YEQ W L ++ + + ++G+ + +A
Sbjct: 5 TIISQLLRDTESLLKQIRLLLQRDFGTQKYEQ--WILA-VQQACRVFQPHDEGSRICRAL 61
Query: 122 NIQGA-LDKYSTALGYLEQLMLNSMFS 147
+ A L K + AL LE + +
Sbjct: 62 FLYTAHLRKLNHALELLEDAGIRDLLL 88
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase.
Length = 335
Score = 31.9 bits (73), Expect = 1.4
Identities = 46/196 (23%), Positives = 66/196 (33%), Gaps = 71/196 (36%)
Query: 49 GFCSDLE----DIN-----SICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLT 99
GF ++LE D+N + CL +L+++ LDY + G + + + S+Q T
Sbjct: 28 GFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITA-------SYQAT 80
Query: 100 EAEKLASIPKLKEDGNTLYKAGNIQGALDK-YSTALGYLEQLMLNSMFSIHINRAAVDTL 158
IQG + S + +L S+ I A D
Sbjct: 81 -----------------------IQGFESRGLSREES---ETLLRK--SVEIACEARD-- 110
Query: 159 KTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYY--- 215
D + RP + IL A S G YL DGS Y
Sbjct: 111 -----IFWDKCQKGSTSRPGRELSYRPILVAA----------SIGSYGAYLADGSEYSGD 155
Query: 216 ------LESIDDFHRR 225
LE + DFHRR
Sbjct: 156 YGPSVTLEKLKDFHRR 171
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 31.9 bits (72), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 86 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 134
E PE E L+E E+ KLKE GN Y+ + A+ YS A+
Sbjct: 106 ELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI 154
Score = 31.9 bits (72), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 416 ESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
E PE E L+E E+ KLKE GN Y+ + A+ YS A+
Sbjct: 106 ELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI 154
>gnl|CDD|168663 PRK06756, PRK06756, flavodoxin; Provisional.
Length = 148
Score = 30.6 bits (69), Expect = 2.1
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 511 TELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGYRA--- 567
+ LE++D + G YT G G F + ++SI LT G+ D+ Y Y
Sbjct: 45 SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVD 104
Query: 568 ---KAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLA 600
+ + G + L L TP + V+K L
Sbjct: 105 ILIEKLQERGAAVVLEGLKVEL--TPEDEDVEKCLQ 138
>gnl|CDD|218593 pfam05445, Pox_ser-thr_kin, Poxvirus serine/threonine protein
kinase.
Length = 434
Score = 30.4 bits (69), Expect = 4.9
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 32/107 (29%)
Query: 592 CKLVQKSLARLAYNDFISATDRSQYEGA--EAFAHIKNLEDTYFNRDIEQYFMSHNLYRT 649
V K R NDF D SQ G + + +E ++ D +F H L++
Sbjct: 326 RNYVFKEPIRSKLNDF----DFSQVAGIINKKIKNSLKVEQNWYY-DF--HFFKHTLFKN 378
Query: 650 RLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRT 696
+ I+ +D FN+ +E++FM +
Sbjct: 379 ---------------------YPEIE--KDPEFNKALEEFFMCCTKD 402
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 27.7 bits (62), Expect = 6.1
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFS-IHINRAAV 155
LK GN L+K G+ A++ Y A L L+ + + N A
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKA------LELDPDNAEAYYNLALA 46
Score = 27.3 bits (61), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
LK GN L+K G+ A++ Y AL
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKAL 30
>gnl|CDD|220277 pfam09521, RE_NgoPII, NgoPII restriction endonuclease. This family
includes the NgoPII (recognises and cleaves GG^CC)
restriction endonuclease.
Length = 263
Score = 29.8 bits (67), Expect = 6.6
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 669 EAFAHIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSK 728
+A ++ + R++ + S NR G +IK+L F D E+ +S+
Sbjct: 6 DAIINLVSNP----ERNLGSHSDSKNRANQMGDALEEYIKDLFSNSFENDEEKKDEIYSE 61
>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family. This family contains
proteins related to alkyl hydroperoxide reductase (AhpC)
and thiol specific antioxidant (TSA).
Length = 124
Score = 28.3 bits (64), Expect = 8.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 568 KAAKLTGKELSLGDFD---AVLF-----HTPYCKLVQKSLARLAYNDF 607
+ L GKE+SL D+ VLF TP C +LA L Y +F
Sbjct: 9 ELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADL-YEEF 55
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,580,096
Number of extensions: 4675482
Number of successful extensions: 3918
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3897
Number of HSP's successfully gapped: 62
Length of query: 945
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 839
Effective length of database: 6,236,078
Effective search space: 5232069442
Effective search space used: 5232069442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)