RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11265
(945 letters)
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid
biosynthesis, cholesterol biosynthesis, mitochondrion,
phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB:
2wya_A*
Length = 460
Score = 139 bits (351), Expect = 3e-35
Identities = 115/376 (30%), Positives = 159/376 (42%), Gaps = 80/376 (21%)
Query: 490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT- 548
P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLT
Sbjct: 2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Query: 549 -----LSIQCYLGALDACYQG-----YRAKAAKLTGKEL---------SLGDFDAVLFHT 589
IQ ++ G ++KA K EL D +
Sbjct: 62 VQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 590 PYCKLVQKSLARLAYNDF----ISATDRSQYE--------GAEAFA-------------- 623
+ + D + D + Y GA A A
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERG 181
Query: 624 ----HIKNLEDTYFNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLED 679
H++N+ D Y ++ + + + Y + Y + D
Sbjct: 182 LRGTHMENVYDFY-KPNLASEYPIVDGKLSIQCYLRALDRCYT-SYRKKIQNQWKQAGSD 239
Query: 680 TYFNRDIEQYFMSH--------------------------NRTEYEGAEAFAHIKNLEDT 713
F D QY + H + Y+G EAF +K LEDT
Sbjct: 240 RPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLK-LEDT 298
Query: 714 YFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMS 773
Y N+D+++ + S+ F++ TK LYL+ GNMYT SLYGCL SLL + L G S
Sbjct: 299 YTNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAG-S 357
Query: 774 RIGLFSYGSDNIKALF 789
RIG FSYGS + F
Sbjct: 358 RIGAFSYGSGLAASFF 373
Score = 111 bits (278), Expect = 6e-26
Identities = 49/79 (62%), Positives = 64/79 (81%)
Query: 5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 64
P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLTV
Sbjct: 2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Query: 65 VSNLMKRYELDYAQIGQLL 83
V LM+R +L + +G+L
Sbjct: 62 VQRLMERIQLPWDSVGRLE 80
Score = 97.3 bits (241), Expect = 2e-21
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 235 AWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 294
+ P++VGIL +E YFP+QYVDQT+LEK++ V AGKYT+GLGQ +MGFCS EDINS+CLT
Sbjct: 1 SMPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLT 60
Query: 295 V 295
V
Sbjct: 61 V 61
Score = 71.5 bits (174), Expect = 4e-13
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 144 SMFSIHI--NRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
S FS + + A L LV+ SD+ RL +R+ V P EFT I+ +++ HK F S
Sbjct: 371 SFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNF-S 429
Query: 202 ETPPGEYLFDGSYYLESIDDFHRRHYKK 229
LF G++YLE +D+ HRR Y +
Sbjct: 430 PPGDTNSLFPGTWYLERVDEQHRRKYAR 457
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 136 bits (344), Expect = 2e-34
Identities = 81/360 (22%), Positives = 135/360 (37%), Gaps = 72/360 (20%)
Query: 492 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSI 551
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 552 Q--------------CYLGALDACYQ-----GYRAKAAKLTGKELSLG-DFDAVLFHTPY 591
+G+ + + + + G G D +
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 592 CKLVQKSLARLAYND----FISATDRSQYE--------GAEAFA---------------- 623
L + D + TD + Y GA A A
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 624 --HIKNLEDTYFNRDIEQY-----FMSHNLYRTRL--AYNDFISATDRTEYEGAEAFAHI 674
H+ ++ D Y +Y +S Y L Y + ++ E +
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 675 KNLEDTYFNRDIEQYF------------MSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQY 722
+ + +N+ +++ F S + E ++ + L+++Y +RD+E+
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLS-LDESYQSRDLEKV 300
Query: 723 FMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
+K ++ +P + +GNMYT SLY SL+ + L G R+ +FSYGS
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSD-LAG-KRVVMFSYGS 358
Score = 109 bits (272), Expect = 3e-25
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 7 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVS 66
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+ V+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 NLMKRYELDYAQIGQLL 83
+L+++Y++D QIG+L
Sbjct: 62 SLLEKYKIDPKQIGRLE 78
Score = 92.2 bits (228), Expect = 1e-19
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 238 ENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
+NVGIL ++ YFP V Q LE HD S GKYTIGLGQ + FC++LED+ S+
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 59
Score = 77.2 bits (189), Expect = 7e-15
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPF-RSE 202
+MFS+ + + + + DV +L AR P +F + + F S+
Sbjct: 363 TMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTSK 422
Query: 203 TPPGEYLFDGSYYLESIDDFHRRHYKK 229
+ L G+YYL+ +D +RR Y K
Sbjct: 423 EGILDLLAPGTYYLKEVDSLYRRFYGK 449
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 115 bits (288), Expect = 2e-27
Identities = 61/327 (18%), Positives = 99/327 (30%), Gaps = 51/327 (15%)
Query: 490 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT- 548
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI +
Sbjct: 4 GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANA 63
Query: 549 ---------------------------LSIQCYLGALDACYQGYRAKAAKLTGKELSLGD 581
+ L L R+ K + G
Sbjct: 64 AEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAGL 123
Query: 582 FDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYE---GAEAFA-HIKNLEDTYFNRDI 637
A L + D S E GA A A + + ++
Sbjct: 124 QLAKNH----VALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 638 EQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHNRTE 697
R + + E I++ + +
Sbjct: 180 NVMLTQDIYDFWRPTGHPYPMVDGPLSNETY-----IQSFAQVWDE------HKKRTGLD 228
Query: 698 YEGAEAFA-HIKNLEDTYFNRDIEQYFMSHSKQS-FERLTKPGLYLANLIGNMYTPSLYG 755
+ +A A HI + + + ++Q + + + +GN+YT SLY
Sbjct: 229 FADYDALAFHIPYTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYL 288
Query: 756 CLVSLLIQTPWERLQGMSRIGLFSYGS 782
L+SLL G ++IGLFSYGS
Sbjct: 289 GLISLLENAT-TLTAG-NQIGLFSYGS 313
Score = 98.9 bits (246), Expect = 4e-22
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 5 WPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 64
+GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI +
Sbjct: 4 GSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANA 63
Query: 65 VSNLMKRYELDYAQIGQLL 83
++ + + + I ++
Sbjct: 64 AEAILTKEDKE--AIDMVI 80
Score = 90.8 bits (225), Expect = 2e-19
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 233 GTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSIC 292
G+ +GI I F+ P Y+D T L + V GK+ IG+GQ +M +DI +
Sbjct: 1 GSTGSMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFA 60
Query: 293 LTV 295
Sbjct: 61 ANA 63
Score = 54.2 bits (130), Expect = 9e-08
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 15/85 (17%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
F+ + + L+ LD R + AE+ E + ++
Sbjct: 318 EFFTGELVAGYQNHLQKE-----THLALLDNRTELSIAEY--------EAMFAETLDTD- 363
Query: 204 PPGEYLFDGSYYLESIDDFHRRHYK 228
+ Y + +I++ R Y+
Sbjct: 364 IDQTLEDELKYSISAINN-TVRSYR 387
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 111 bits (279), Expect = 3e-26
Identities = 50/350 (14%), Positives = 99/350 (28%), Gaps = 76/350 (21%)
Query: 480 TVKPPIMSHQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDL 539
++ + +GI I F ++ +L + K++ GL +
Sbjct: 23 SMTGGQQMGRGSMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPIT 82
Query: 540 EDINSICLT----------------------------LSIQCYLGALDACYQGYRAKAAK 571
+D+ ++ + Y+ +L R+ K
Sbjct: 83 DDVVTLAAGSANEILTAEDKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMK 142
Query: 572 LTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYE-----GAEAF---- 622
+ A L + + + + +D + E G+ A
Sbjct: 143 EAAYSATAALNYAKL----HVEKHPDTRVLVLASDIAKYGIGTPGESTQGAGSIAMLVKK 198
Query: 623 ---------AHIKNLEDTY-FNRDIEQYFMSHNLYRTRLAYNDFISATDRTEYEGAEAFA 672
+ D F R N + Y D + +A
Sbjct: 199 DPRILILHDETLAQTRDIMDFWRPNYTTTPYVNGMYSTKQYLDMLK----------TTWA 248
Query: 673 HIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFE 732
+ + F H + F I +++ S ++ +
Sbjct: 249 EY--QKRFDVSLTDFAAFCFHLPFPKLALKGFNKI-----------MDKQVPSDLQEKLK 295
Query: 733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
+ + + IGN+YT SL+ L+SLL + + G +I LFSYGS
Sbjct: 296 VNFEASILYSKQIGNIYTGSLFLGLLSLLENSQ-NLVAG-DKIALFSYGS 343
Score = 102 bits (255), Expect = 4e-23
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 4 QWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 63
+ +GI I F ++ +L + K++ GL + +D+ ++
Sbjct: 32 RGSMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAG 91
Query: 64 VVSNLMKRYELDYAQIGQLL 83
+ ++ D +I ++
Sbjct: 92 SANEILTAE--DKEKIDMVI 109
Score = 92.1 bits (228), Expect = 1e-19
Identities = 10/73 (13%), Positives = 23/73 (31%)
Query: 223 HRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFC 282
H + +GI I F ++ +L + K++ GL +
Sbjct: 20 HMASMTGGQQMGRGSMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIA 79
Query: 283 SDLEDINSICLTV 295
+D+ ++
Sbjct: 80 PITDDVVTLAAGS 92
Score = 57.4 bits (138), Expect = 1e-08
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
+F+ + + + L+T + D+L R P+ + +I ++ L S
Sbjct: 348 EIFTGTLVKGFKEQLQT------NRLDKLKRRTPLSVENYEKIFF-EEAQLDDKGNASF- 399
Query: 204 PPGEYLFDGSYYLESIDDFHRRHYKKYE 231
+ G + L+ I + H+R Y K
Sbjct: 400 ---KEYQTGPFALKEILE-HQRIYGKVN 423
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic;
hydromethylglutaryl COA, mevalonate pathway, structural
GENO structural genomics consortium, SGC; HET: COA;
2.00A {Homo sapiens}
Length = 478
Score = 109 bits (273), Expect = 3e-25
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 3 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 62
+ +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+
Sbjct: 19 YFQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCM 78
Query: 63 TVVSNLMKRYELDYAQIGQLL 83
TVV NLM+R L Y IG+L
Sbjct: 79 TVVQNLMERNNLSYDCIGRLE 99
Score = 93.0 bits (230), Expect = 7e-20
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 235 AWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 294
+VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+T
Sbjct: 20 FQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 79
Query: 295 V 295
V
Sbjct: 80 V 80
Score = 92.6 bits (229), Expect = 9e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 488 HQWPENVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 547
+ +VGI+ +E YFPSQYVDQ ELEK+D V AGKYTIGLGQAKMGFC+D EDINS+C+
Sbjct: 19 YFQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCM 78
Query: 548 T 548
T
Sbjct: 79 T 79
Score = 79.5 bits (195), Expect = 1e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 673 HIKNLEDTYFNRDIEQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFE 732
++ D + Y G EAF +K LEDTYF+RD+E+ FM S + F
Sbjct: 278 LVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVK-LEDTYFDRDVEKAFMKASSELFS 336
Query: 733 RLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRIGLFSYGS 782
+ TK L ++N GNMYT S+YG L S+L Q ++L G RIG+FSYGS
Sbjct: 337 QKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAG-KRIGVFSYGS 385
Score = 73.0 bits (178), Expect = 2e-13
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 144 SMFSIHINRAAVDTLKT--LVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRS 201
+++S+ + + A + L D++ RLD+R V P F + +++ H +
Sbjct: 390 TLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNY-I 448
Query: 202 ETPPGEYLFDGSYYLESIDDFHRRHYKK 229
+ LF+G++YL +D+ HRR Y +
Sbjct: 449 PQGSIDSLFEGTWYLVRVDEKHRRTYAR 476
Score = 67.9 bits (165), Expect = 7e-12
Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 549 LSIQCYLGALDACYQGYRAKAAK-----LTGKELSLGDFDAVLFHTPYCKLVQKSLARLA 603
LSIQCYL ALD CY Y K K+ +L DF ++FH+PYCKLVQKSLAR+
Sbjct: 228 LSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARML 287
Query: 604 YNDFI---SATDRSQYEGAEAFAHIKNLEDTYFNRDIEQYFMS 643
NDF+ + S Y G EAF +K LEDTYF+RD+E+ FM
Sbjct: 288 LNDFLNDQNRDKNSIYSGLEAFGDVK-LEDTYFDRDVEKAFMK 329
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 94.9 bits (236), Expect = 9e-21
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 8 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVVSN 67
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+ +
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKD 61
Query: 68 LMKRYELDYAQIGQLLQV--ESP 88
++ + +IG ++ V ES
Sbjct: 62 IITDEDKK--KIG-MVIVATESA 81
Score = 83.7 bits (207), Expect = 3e-17
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 239 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTV 295
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANA 58
Score = 83.7 bits (207), Expect = 4e-17
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 493 NVGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLT 548
+GI I FY P YVD +L + QV K+ IG+GQ +M +DI S+
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGAN 57
Score = 60.6 bits (147), Expect = 1e-09
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 549 LSIQCYLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFI 608
LS Y+ + + Y + SL DF ++ FH P+ K+ +K+L + N
Sbjct: 200 LSKDAYIRSFQQSWNEYAKRQ------GKSLADFASLCFHVPFTKMGKKALESIIDNADE 253
Query: 609 SATDR 613
+ +R
Sbjct: 254 TTQER 258
Score = 59.0 bits (143), Expect = 3e-09
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 144 SMFSIHINRAAVDTLKTLVTKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSET 203
+S + D L + L+ R V + + F E
Sbjct: 312 EFYSATLVEGYKDHLDQA-----AHKALLNNRTEVSVDAYETFF----KRFDDVEFDEEQ 362
Query: 204 PPGEYLFDGSYYLESIDDFHRRHYKK 229
+ +YL +I++ R +++
Sbjct: 363 DA-VHEDRHIFYLSNIENNVREYHRP 387
Score = 46.3 bits (110), Expect = 3e-05
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 716 NRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCLVSLLIQTPWERLQGMSRI 775
I +++ + + +GN+YT SLY L+SLL LQ I
Sbjct: 244 LESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENR---DLQAGETI 300
Query: 776 GLFSYGS 782
GLFSYGS
Sbjct: 301 GLFSYGS 307
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 93.5 bits (232), Expect = 1e-20
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 35/182 (19%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFK-LEVWETLVKHMSIGEISKFVCD 352
T H+ +S +D+ +P++LVLGK+ K L V M GE +
Sbjct: 69 TCFLHYRAWTKNSQ-HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVG 127
Query: 353 KSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEL 412
L AY ++ V DL + +E+
Sbjct: 128 WEL--AYG-----------------KEGNFSFPNV-------------PPMADLLYEVEV 155
Query: 413 LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 472
+ + +E + +T E++ + + K DGN+L+K ++ A+ +Y A+ Y+ +
Sbjct: 156 IGFDETKEGKAR-SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM 214
Query: 473 KQ 474
Q
Sbjct: 215 FQ 216
Score = 54.6 bits (131), Expect = 7e-08
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 893 DEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
+ +K P LN + C + K Y I H VLT + +
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262
Score = 50.0 bits (119), Expect = 2e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
N KALFRRGKA + + A D ++
Sbjct: 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Score = 49.2 bits (117), Expect = 3e-06
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 83 LQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLML 142
+ + + +T E++ + + K DGN+L+K ++ A+ +Y A+ Y+ +
Sbjct: 155 VIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM 214
Query: 143 NSM------------FSIHINRAAV 155
+ H+N AA
Sbjct: 215 FQLYGKYQDMALAVKNPCHLNIAAC 239
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 82.6 bits (204), Expect = 4e-17
Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 48/178 (26%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V D + D + ++ +G+ L++ E ++ M GE S
Sbjct: 46 IVEVALEGYYKD---KLFDQ-----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY 97
Query: 351 CDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTI 410
S Y F S G E + + +L + +
Sbjct: 98 LKPS----YAFGSV---------------------------GKEKFQ--IPPNAELKYEL 124
Query: 411 ELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
L E +ESW++ EKL +KE G +K G + AL +Y + +LE
Sbjct: 125 HLKSFE----KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
Score = 59.1 bits (143), Expect = 2e-09
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 91 YEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE----------QL 140
+ESW++ EKL +KE G +K G + AL +Y + +LE Q
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 141 MLNSMFSIHINRAAV 155
+ H+N A
Sbjct: 191 AQALRLASHLNLAMC 205
Score = 57.2 bits (138), Expect = 9e-09
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
++E+ +K L++ LN + C L + + + IE L D
Sbjct: 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
Score = 51.4 bits (123), Expect = 7e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
S+N K L RRG+AH+ V + E A AD ++V L
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.6 bits (188), Expect = 3e-14
Identities = 91/551 (16%), Positives = 171/551 (31%), Gaps = 179/551 (32%)
Query: 451 GNIQGALDKYSTAL-GYLEQLMLKQTFVNRTVKPP--IMSHQWPENVGILGIEF-YFPSQ 506
G+++ L TA QL ++ F +P + P L +F + S
Sbjct: 14 GSLEHVLL-VPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 507 YVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLS-------------IQC 553
V+ +++ + DQV + L + + + DI+++ L I+
Sbjct: 71 LVEPSKVGQFDQVLN----LCLTEFENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 554 YLGALDACYQGYRAKAAKLTGKELSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDR 613
Y A+ + + A LF + V + A+L F
Sbjct: 126 Y----------ITARI--MAKRPFDKKSNSA-LF-----RAVGEGNAQL-VAIF-----G 161
Query: 614 SQYEGAEAFAHIKNLEDTYFN--RDIEQYFMSHNLYRTRLAYNDFISATD-------RTE 664
Q G N +D YF RD+ + Y + D I + RT
Sbjct: 162 GQ--G--------NTDD-YFEELRDL------YQTYHVLVG--DLIKFSAETLSELIRTT 202
Query: 665 YEGAEAFAH-------IKNLEDT----YFNR-----------DIEQYFMSHNRTEYEGAE 702
+ + F ++N +T Y + Y ++ + E
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 703 AFAHIKNLEDTYFNRD------IEQYFMSHSKQSFERLTKPGLYLANLIG---NMYTPSL 753
+++K T ++ I + S +SF + + + IG P+
Sbjct: 263 LRSYLKGA--TGHSQGLVTAVAIA---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 754 YGCLVSLLIQTPWER----------LQGMSRIGLFSY-GSDNIKALFRRGKAHMNVWNCE 802
L +++ E + +++ + Y N L + +++ N
Sbjct: 318 S--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN-- 372
Query: 803 EAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSKTLRDAAKHSADGTEQSK--- 859
GA V + GP S L L+ TLR A + G +QS+
Sbjct: 373 --GAK-NLVVS------GPPQS-LYGLNL-----------TLRKAK--APSGLDQSRIPF 409
Query: 860 --RHCCGVQM--------HTGY-EDLNELLKKSQDLTFTIEKPNDEDWKKLNDLKIPILL 908
R H+ ++L+ +DL N+ + D++IP+
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLIN--KDL-----VKNNVSFNA-KDIQIPV-- 459
Query: 909 NYSQCKLDQKD 919
Y D D
Sbjct: 460 -YDTF--DGSD 467
Score = 68.5 bits (167), Expect = 8e-12
Identities = 100/562 (17%), Positives = 174/562 (30%), Gaps = 189/562 (33%)
Query: 18 FPSQYVDQTE-LEKHDQVSA-----GKYTIGLGQAKMGFCSDLEDINSICLT--VVSNLM 69
F + TE D+ + GK+ +G+ S L + + + V++ +
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKF--------LGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 70 KRYELDYAQ-------IGQLLQVESPEEYEQESWQLT--EAEKLASIPKLKEDGNTLYKA 120
+E Y + +LLQ + + A +A P K+ + L++A
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 121 ---GNI--------QGALDKYSTALGYLEQLMLNSMFSIH-------INRAAVDTLKTLV 162
GN QG D Y E+L ++ + I +A +TL L+
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDY------FEEL--RDLYQTYHVLVGDLIKFSA-ETLSELI 199
Query: 163 TKLSDVQDRLDARRPVPPAEFTRILAAKKENLH---KYPFRSETPPGEYLFDGSYYLESI 219
+ LDA + FT+ L N+ + P S TP +YL
Sbjct: 200 ------RTTLDAEKV-----FTQGL-----NILEWLENP--SNTPDKDYLL--------- 232
Query: 220 DDFHRRHYKKYEAGTAWPENVGILGIEFYF---------PSQYVDQTE-LEKHDQ--VSA 267
+ P +G++ + Y P + + H Q V+A
Sbjct: 233 -----------SIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 268 GKYTIGLGQAKMGFCSDLEDINSICLTVHF------HFVTQLCDSDNTILDDSRKLGK-- 319
+ + + +TV F + +IL+DS + +
Sbjct: 281 ----VAIAETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 320 --PMQLVLGKKFKLEVWETLV----------KHMSIGEI---SKFVCDKSLVSAYPF--- 361
PM + E + V K + I + V VS P
Sbjct: 335 PSPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-----VSGPPQSLY 387
Query: 362 -VSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIELLQVESP-- 418
++ TLR A + G +QS+ + + +K L F+ L V SP
Sbjct: 388 GLNLTLRKAK--APSGLDQSR---------IPFSE-----RK---LKFSNRFLPVASPFH 428
Query: 419 EEYEQESWQLTEAEKLASIPKLKED---GNTLYKAGNIQGALDKYSTALGY-LEQLMLKQ 474
L A + +D N + A +IQ + Y T G L L
Sbjct: 429 SHL------LVPAS-----DLINKDLVKNNVSFNAKDIQIPV--YDTFDGSDLRVL---S 472
Query: 475 TFVNRTVKPPIMSHQ--WPENV 494
++ + I+ W
Sbjct: 473 GSISERIVDCIIRLPVKWETTT 494
Score = 56.6 bits (136), Expect = 4e-08
Identities = 81/484 (16%), Positives = 133/484 (27%), Gaps = 161/484 (33%)
Query: 245 IEFYFP---SQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTVHF-HFV 300
+E + + ++L +Q + L + GF +D E L F +V
Sbjct: 16 LEHVLLVPTASFFIASQL--QEQFNKI-----LPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 301 TQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWE----------TLVKHMSIGEISKFV 350
+ L + VL L +E L + + V
Sbjct: 69 SSLVEPSKV---------GQFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 351 CDKSLVSAY---------PFV----SKTLRDAAKHSAD------GTEQSKRHCCGVQMHT 391
K L+ Y PF S R + +A G Q G
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--Q------GN-TDD 168
Query: 392 GYEDLNELLKKSQDL-----TFTIELLQ--VESPEE----YEQ----ESWQLTEAEK--- 433
+E+L +L + L F+ E L + + + + Q W L
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPD 227
Query: 434 ---LASIP--------------------------KLKED--GNTLYKAGNIQGAL----- 457
L SIP +L+ G T + G + A+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTAVAIAET 286
Query: 458 ----DKYSTALGYLEQLML-----KQTFVNRTVKPPIMSHQWPENVG-------ILGIEF 501
+ + + L + + N ++ P I+ N G I +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 502 YFPSQYVDQT--ELEKHDQVSAGKYTIGL--GQAKM---GFCSDLEDINSICLTLSIQCY 554
YV++T L QV I L G + G L + LTL
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVE-----ISLVNGAKNLVVSGPPQSLY---GLNLTLRKAKA 398
Query: 555 LGALDACYQGYRAKAAKLTGKELSLGDFDAVL--FHTPYCKL---VQKSLARLAYNDF-I 608
LD + + K + + F V FH+ L L N+
Sbjct: 399 PSGLDQSRIPFSERKLKFSNR------FLPVASPFHSHL--LVPASDLINKDLVKNNVSF 450
Query: 609 SATD 612
+A D
Sbjct: 451 NAKD 454
Score = 48.9 bits (116), Expect = 9e-06
Identities = 43/238 (18%), Positives = 69/238 (28%), Gaps = 86/238 (36%)
Query: 614 SQ--------YEGAEAFAHI-----KNLEDTY-FN-RDIEQ--------YFMSHNLYRTR 650
SQ Y+ ++A + + +DTY F+ DI +F R R
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 651 LAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSH-----NRTEY------- 698
Y+ I T E K ++ N Y + T++
Sbjct: 1686 ENYSAMIFETIVDGKLKTE-----KIFKE--INEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 699 -EGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIGNMYTPSLYGCL 757
E A AF +K+ + F HS L G Y A L
Sbjct: 1739 MEKA-AFEDLKS----KGLIPADATFAGHS------L---GEYAA--------------L 1770
Query: 758 VSLLIQTPWERLQGMSRIGLFSYGSDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
SL + + S ++ +F RG +E G + A++
Sbjct: 1771 ASL------------A--DVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Score = 45.0 bits (106), Expect = 1e-04
Identities = 64/327 (19%), Positives = 100/327 (30%), Gaps = 111/327 (33%)
Query: 577 LSLGDFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYFNRD 636
LS G + V P F A SQ + E F I F D
Sbjct: 11 LSHGSLEHV-LLVPT-------------ASFFIA---SQLQ--EQFNKILPEPTEGFAAD 51
Query: 637 IEQ--------YFMSHNLYRTRLAYNDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQ 688
E F+ ++S E F + NL T F
Sbjct: 52 DEPTTPAELVGKFLG------------YVS--SLVEPSKVGQFDQVLNLCLTEFENC--- 94
Query: 689 YFMSHNRTEYEGAE--AF-AHIKNLEDTYFNRD---IEQYF--MSHSKQSFERLTKPGLY 740
++ N + A A + DT + I+ Y +K+ F++ + L+
Sbjct: 95 -YLEGN-------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 741 ------LANLI------GN----------MYTPSLYGCLVSLLIQTPWERLQGMSRIGLF 778
A L+ GN +Y Y LV LI+ E L + R
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIR---- 200
Query: 779 SYGSDNIKALFRRGKAHMNV--W-NCEEAGADLKRVAALDSTMLGPVS---SMLKQLSSK 832
+ + + +F +G +N+ W D L S P+S + QL+
Sbjct: 201 --TTLDAEKVFTQG---LNILEWLENPSNTPD---KDYLLSI---PISCPLIGVIQLAHY 249
Query: 833 LVSAY-----PF-VSKTLRDAAKHSAD 853
+V+A P + L+ A HS
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQG 276
Score = 34.6 bits (79), Expect = 0.20
Identities = 45/306 (14%), Positives = 76/306 (24%), Gaps = 96/306 (31%)
Query: 60 ICLTVVSNLMKRYELDYAQIGQLLQVESPEE-YEQESWQLTEAEKL--ASIPKLKEDGNT 116
I + +++ Y +LL +P E ++ L A + +
Sbjct: 241 IGVIQLAH--------YVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 117 LYKAGNIQGALDKYSTALGY----------LEQLMLNS-----------MFSI-HINRAA 154
+ +++ A+ +G L +L M SI ++ +
Sbjct: 292 FFV--SVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 155 VDTLKTLVTKLSDVQDRLDARRPV---------------PPA-------EFTRILAAKKE 192
V ++ L A + V PP + A
Sbjct: 349 VQDY------VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 193 NLHKYPFRSETPPGEYLFDGSYYLESIDDFHRRHYKKYEAGT---AWPENVGILGIEFYF 249
+ + PF F L FH NV +
Sbjct: 403 DQSRIPFSERKLKFSNRF-----LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 250 PSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI-NSIC-LTVHFHFVTQLCDSD 307
P V T +V +G S E I + I L V +
Sbjct: 458 P---VYDTFDGSDLRVLSG--------------SISERIVDCIIRLPVKW---ETTTQFK 497
Query: 308 NT-ILD 312
T ILD
Sbjct: 498 ATHILD 503
Score = 33.5 bits (76), Expect = 0.47
Identities = 41/281 (14%), Positives = 82/281 (29%), Gaps = 97/281 (34%)
Query: 240 VGILGIEFYFPSQYVDQTELEKHDQVSAGKYTIGLGQAKMGFCSDLEDI---NSICLTVH 296
G +G++ Y S+ + A + + GF + DI N + LT+H
Sbjct: 1629 QG-MGMDLYKTSKAAQDV-WNR-----ADNHF----KDTYGF--SILDIVINNPVNLTIH 1675
Query: 297 F----------HFVTQLCDSDNTILDDSRKLGKPMQLVLGKK-FK--------------- 330
F ++ + ++ + K+ K + F+
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 331 --------LEVW--ETLVK-------HMSIGEISKFVCDKSLVS---AYPF------VS- 363
E + L+ H S+GE + +L S V
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGH-SLGEYA------ALASLADVMSIESLVEVVFY 1788
Query: 364 --KTLRDAAKHSADGTEQSKRHCCGV---QMHTGYEDLNELLKKSQDLTFTIELLQVESP 418
T++ A G +S + ++ + + L + +E + +
Sbjct: 1789 RGMTMQVAVPRDELG--RSNYGMIAINPGRVAASFSQ--------EALQYVVERVGKRTG 1838
Query: 419 E--E---YEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQ 454
E Y E+ Q A L ++ + N + K I
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI-KLQKID 1878
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 7e-13
Identities = 107/650 (16%), Positives = 194/650 (29%), Gaps = 177/650 (27%)
Query: 149 HINRAAVDTLKTLVTKLSDVQDRLDARRPV-PPAEFTRILAAKKENLHKYPFRSETPPGE 207
+ + + + D +D D + + E I+ +K
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---------- 65
Query: 208 YLFD------GSYYLESIDDFHRRHYK----KYEAGTAWPENVGILGIEFY--------- 248
LF + +++ R +YK + P + + IE
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 249 FPSQYVDQ----TELEKH-DQVSAGKYTI-----GLG--------------QAKMGF--- 281
F V + +L + ++ K + G G Q KM F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 282 ------C----SDLEDINSICLTVHFHFVTQLCD-SDNTILDDSRKLGKPMQLVLGKKFK 330
C + LE + + + ++ T D S N L + +L+ K ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 331 LEVWETLVKHMSIGEISKFVCDKSLVSAYPFVSKTL---RDAAKHSADG-TEQSKRHCCG 386
L+ + V + +A+ K L R K D + + H
Sbjct: 245 ----NCLL-------VLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISL 291
Query: 387 VQMHTGY---EDLNELLK----KSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPK 439
E + LLK + QDL P E + + L+ I +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL-----------PREVLTTNPRR-----LSIIAE 335
Query: 440 LKEDG-NTL--YKAGNIQGALDKYSTA----LGYLEQLMLKQTFVNRTVKPPIMSHQWPE 492
DG T +K DK +T L LE ++ F +V +P
Sbjct: 336 SIRDGLATWDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------FPP 383
Query: 493 NVGI----LGIEFYFPSQYVDQTELEK-HDQVSAGKYTIGLGQAKMGFCSDLEDINSICL 547
+ I L + ++ + + K H KY++ Q K S I SI L
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLH------KYSLVEKQPKESTIS----IPSIYL 433
Query: 548 TLSIQC-YLGAL-DACYQGYRAKAAKLTGKELSLGDFDAVLFHTPY----CKLVQK-SLA 600
L ++ AL + Y + + H + + ++ +L
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 601 RLAYND--FISATDRSQYEGAEAFAHIKN-LED--TYFNRDIEQYFMSHNLYRTRL--AY 653
R+ + D F+ R A I N L+ Y + Y ++ RL A
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYERLVNAI 548
Query: 654 NDFISATDRTEYEGAEAFAHIKNLEDTYFNRDIEQY-FMSHNRTEYEGAE 702
DF+ E ++ + T D+ + M+ + +E A
Sbjct: 549 LDFL--------PKIE--ENLICSKYT----DLLRIALMAEDEAIFEEAH 584
Score = 47.5 bits (112), Expect = 2e-05
Identities = 61/450 (13%), Positives = 118/450 (26%), Gaps = 149/450 (33%)
Query: 581 DFDAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAEAFAHIKNLEDTYF-NRDIEQ 639
DF+ Y ++ + F+ D ++++ + +I+
Sbjct: 8 DFETGEHQYQYKDILSVFE-----DAFVDNFD---------CKDVQDMPKSILSKEEIDH 53
Query: 640 YFMS-HNLYRTRL-----------AYNDFISATDRTEYEG-AEAFAHIKNLEDTYFNRDI 686
MS + T F+ R Y+ E +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----EQRQPSMMT 109
Query: 687 EQYFMSHNRTEYEGAEAFAHIKNLEDTYFNRDIEQYFMSHSKQSFERLTKPGLYLANLIG 746
Y +R Y + FA +Y +S Q + +L +
Sbjct: 110 RMYIEQRDRL-YNDNQVFA---------------KYNVS-RLQPYLKLRQ---------- 142
Query: 747 NMYTPSLYGCLVSLLIQTPWERLQGMSRIG-----LFSYGSDNIKALFRRGKAHMNVWNC 801
L+ L + G+ G L S ++ +N+ NC
Sbjct: 143 ---------ALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 802 EEAGADLKRVAALDSTMLGPVSSM-----------------LKQL--------------- 829
L+ + L + +S L++L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 830 --SSKLVSAYPFVSKTL---RDAAKHSADG-TEQSKRHCCGVQMHTGY---EDLNELLK- 879
++K +A+ K L R K D + + H E + LLK
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 880 ---KSQDL----------------TFTIEKPND-EDWKKLNDLKIPILLNYSQCKLD--- 916
+ QDL + ++WK +N K+ ++ S L+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 917 QKDYYSVIEHTTTVLTYDPEGT-VTAKVLS 945
+ + +V P + +LS
Sbjct: 371 YRKMF----DRLSVF---PPSAHIPTILLS 393
Score = 47.5 bits (112), Expect = 2e-05
Identities = 82/598 (13%), Positives = 154/598 (25%), Gaps = 225/598 (37%)
Query: 47 KMGFC----SDLEDINSICLTVVSNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAE 102
+ C + LE + + + N R + S + S Q
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-----------SNIKLRIHSIQ----A 232
Query: 103 KLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHI-NRAAVDTL--- 158
+L + K K Y L L+L ++ N A +
Sbjct: 233 ELRRLLKSK-----------------PYENCL-----LVLL-----NVQNAKAWNAFNLS 265
Query: 159 -KTLV-TKLSDVQDRLDARRPVPPAEFTRILAAKKENLHKYPFRSETPPGEYLFDGSYYL 216
K L+ T+ V D L A + L L E + L YL
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTLTP----DEV---KSLL--LKYL 311
Query: 217 E-SIDDFHRRHYKKYEAGTAWPENVGILG---IEFYFPSQYVDQTELEKHDQVSAGKYTI 272
+ D R E T P + I+ + +K +
Sbjct: 312 DCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----- 360
Query: 273 GLGQAKMGFCSDLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLE 332
S L + F ++ S + P L L
Sbjct: 361 ----------SSLNVLEPAEYRKMFD--------RLSVFPPSAHI--PTIL-------LS 393
Query: 333 V-WETLVKHMSIGEISKFVCDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHT 391
+ W ++K + + + SLV K + T + + +
Sbjct: 394 LIWFDVIKS-DVMVVVNKLHKYSLV-------------EKQPKEST---------ISIPS 430
Query: 392 GYEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAG 451
Y +L L+ L +I + P+ ++ + + D Y
Sbjct: 431 IYLELKVKLENEYALHRSI-VDHYNIPKTFDSD-----------DLIPPYLDQ---Y--- 472
Query: 452 NIQGALDKYSTALGY-LEQLMLKQTFVNRTVKPPIMSHQWPENVGILGIEFYFPSQYVDQ 510
+ + +G+ L+ + + F ++D
Sbjct: 473 --------FYSHIGHHLKNIE--------------HPERMTL----------FRMVFLDF 500
Query: 511 TELE---KHDQVSAGKYTIGLGQAKMGFCSDLEDINSICLTLSIQCYLGALDACYQGY-R 566
LE +HD + A + L+ + Y+ Y
Sbjct: 501 RFLEQKIRHDSTAWN--------ASGSILNTLQQLKF-----------------YKPYIC 535
Query: 567 AKAAKLTGKELSLGDF----DAVLFHTPYCKLVQKSLARLAYNDFISATDRSQYEGAE 620
K ++ DF + L + Y L++ +A +A ++ I +E A
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLR--IALMAEDEAI-------FEEAH 584
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 66.3 bits (162), Expect = 2e-12
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 87 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL------ 140
+ ++ + T+ EK+ S +KE+GN +K I A+ KY AL +
Sbjct: 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77
Query: 141 -----MLNSMFSIHINRAAV 155
N S ++N A
Sbjct: 78 ILLDKKKNIEISCNLNLATC 97
Score = 64.0 bits (156), Expect = 1e-11
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 417 SPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL 470
+ ++ + T+ EK+ S +KE+GN +K I A+ KY AL +
Sbjct: 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT 71
Score = 52.1 bits (125), Expect = 1e-07
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 884 LTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
T E + K +++I LN + C KDY I+H + VL D
Sbjct: 68 FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120
Score = 50.9 bits (122), Expect = 3e-07
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
+N+KAL++ G A+M EEA +L + A+L+
Sbjct: 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 56.2 bits (136), Expect = 3e-09
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 99 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMF------------ 146
E +KL S+ L++ GN L+ + + A+D Y AL L+ L+L
Sbjct: 3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62
Query: 147 -SIHINRAAV 155
++ N +
Sbjct: 63 IPLYANMSQC 72
Score = 55.5 bits (134), Expect = 4e-09
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 883 DLTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDP 935
D EKP + +W +L+ IP+ N SQC L+ D + E ++ VL +
Sbjct: 42 DTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94
Score = 55.1 bits (133), Expect = 6e-09
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKL 833
N KALFRR KA + W +EA DLK + V+ +K ++ +
Sbjct: 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145
Score = 54.3 bits (131), Expect = 1e-08
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 429 TEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLKQTF 476
E +KL S+ L++ GN L+ + + A+D Y AL L+ L+L++
Sbjct: 3 AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKP 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 52.8 bits (126), Expect = 4e-07
Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 48/181 (26%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
TV H + + D + + +G+ ++ + ++ M E
Sbjct: 167 TVEIHLEGRC---GGRMFDC-----RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILY 218
Query: 351 CDKSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTI 410
+ G ++ + +L + +
Sbjct: 219 LGPRY--GF-----------------------------GEAGKPKFG--IEPNAELIYEV 245
Query: 411 ELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQL 470
L E +ESW++ EKL +KE G +K G A+ +Y + +LE
Sbjct: 246 TLKSFE----KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 471 M 471
Sbjct: 302 Y 302
Score = 52.0 bits (124), Expect = 6e-07
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 889 EKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
++++ K + LN + C L ++Y +E L D
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Score = 50.1 bits (119), Expect = 2e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
S N K L+RRG+A + + E A D ++V ++
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Score = 42.7 bits (100), Expect = 4e-04
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
V+ H+ +L S+ D S +P LGK ++ W+ V M GEI +C
Sbjct: 52 KVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKP 109
Query: 354 SL 355
Sbjct: 110 EY 111
Score = 40.8 bits (95), Expect = 0.002
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 91 YEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE----------QL 140
+ESW++ EKL +KE G +K G A+ +Y + +LE +
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311
Query: 141 MLNSMFSIHINRAAV 155
+ + + +N A
Sbjct: 312 SESFLLAAFLNLAMC 326
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 47.4 bits (113), Expect = 2e-06
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 100 EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+S+ +L+++GN L+K G+ GAL Y+ ALG ++ H NRAA
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL--HRNRAA 73
Score = 41.6 bits (98), Expect = 2e-04
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
++KAL+RR +A + ++A DL+R +L+
Sbjct: 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 430 EAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGY 466
+S+ +L+++GN L+K G+ GAL Y+ ALG
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL 57
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 48.2 bits (115), Expect = 8e-06
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 884 LTFTIEKPNDEDWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
+ + D D KL + + +LN CKL D+ ++ L DP
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Score = 47.0 bits (112), Expect = 2e-05
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 92 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE-----------QL 140
+ + + L LK GNT +K+ N + A+ KY+ L Y+E
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 141 MLNSMFSIHINRAAV 155
+ S +N A
Sbjct: 268 LQPVALSCVLNIGAC 282
Score = 43.9 bits (104), Expect = 2e-04
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 422 EQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLE 468
+ + + L LK GNT +K+ N + A+ KY+ L Y+E
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE 254
Score = 42.0 bits (99), Expect = 7e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
N KAL+RR + + ++A ADLK+ +
Sbjct: 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCDK 353
+V + L D D + P + LG+ L E + M GE+++F+
Sbjct: 46 SVLVKYSGYLEHMD-RPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKP 104
Query: 354 SLVSAY 359
+ AY
Sbjct: 105 NY--AY 108
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V+ H+ +L S+ D S +P LGK +V W+ V M GEI +
Sbjct: 56 KVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKG---QVIKAWDIGVATMKKGEICHLL 110
Query: 351 CDKSLVSAY 359
C AY
Sbjct: 111 CKPEY--AY 117
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 39.8 bits (93), Expect = 0.002
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVC 351
V H+ L D T D S LGK ++ W+ + M +GE+ C
Sbjct: 72 RVFVHYTGWLLD--GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITC 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 38.1 bits (89), Expect = 0.003
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
++KA F G+ + + + +EA A+L+R +L
Sbjct: 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
Score = 36.5 bits (85), Expect = 0.011
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+LKE GN L+ A Y A+ +++ + NRA
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVY--YTNRAL 51
Score = 35.8 bits (83), Expect = 0.018
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LKE GN L+ A Y A+
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAI 36
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 37.7 bits (88), Expect = 0.004
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H+V +L + D S P + L + EV W+ V M E
Sbjct: 39 EVTVHYVGKLES-TGKVFDSSFDRNVPFKFHLEQG---EVIKGWDICVSSMRKNEKCLVR 94
Query: 351 C 351
Sbjct: 95 I 95
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 37.6 bits (88), Expect = 0.004
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V+ H+ +L S+ D S +P LGK +V W+ V M GEI +
Sbjct: 40 KVYVHYKGKL--SNGKKFDSSHDRNEPFVFSLGKG---QVIKAWDIGVATMKKGEICHLL 94
Query: 351 C 351
C
Sbjct: 95 C 95
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 37.2 bits (87), Expect = 0.004
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H+ L + D S G P Q +G +V W+ + +S+GE ++
Sbjct: 27 LVTIHYTGTL--ENGQKFDSSVDRGSPFQCNIGVG---QVIKGWDVGIPKLSVGEKARLT 81
Query: 351 C 351
Sbjct: 82 I 82
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 36.8 bits (86), Expect = 0.005
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
T H+ L D D SR KP + +LGK+ EV WE V MS+G+ +K
Sbjct: 21 TCVVHYTGML--EDGKKFDSSRDRNKPFKFMLGKQ---EVIRGWEEGVAQMSVGQRAKLT 75
Query: 351 C 351
Sbjct: 76 I 76
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 37.2 bits (87), Expect = 0.005
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
IK R+ + + +A + +D
Sbjct: 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
Score = 34.5 bits (80), Expect = 0.036
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+ K GN +K G+ A+ Y+ A+ + N++ + NRAA
Sbjct: 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAIL--YSNRAA 55
Score = 34.1 bits (79), Expect = 0.054
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+ K GN +K G+ A+ Y+ A+
Sbjct: 15 EEKNKGNEYFKKGDYPTAMRHYNEAV 40
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 37.7 bits (88), Expect = 0.005
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
IK +RR ++M + A D + V +
Sbjct: 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111
Score = 35.8 bits (83), Expect = 0.027
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+LK N +KA + + A+ YS A+ N+++ + NR+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIY--YGNRSL 55
Score = 34.7 bits (80), Expect = 0.055
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LK N +KA + + A+ YS A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAI 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 36.8 bits (86), Expect = 0.005
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
D K R+ A + EEA + +
Sbjct: 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
Score = 34.1 bits (79), Expect = 0.044
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+LKE GN GNI AL YS A+ N + + NR+A
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVL--YSNRSA 46
Score = 33.7 bits (78), Expect = 0.071
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LKE GN GNI AL YS A+
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAI 31
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 39.0 bits (91), Expect = 0.005
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVC 351
V H+ L D D SR + LG+ ++ W+ +K M GE + F
Sbjct: 32 EVEVHYTGTL--LDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Score = 35.2 bits (81), Expect = 0.10
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 294 TVHFHFVTQLCDSDNTILDD-SRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFVC 351
V +L D T+ +P + ++ +E + V +M GE++
Sbjct: 265 VVTVKITGKL--QDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTI 321
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 37.3 bits (87), Expect = 0.006
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
TV H+V L + T D SR G LG+ V W+ V M+ GE+++F
Sbjct: 35 TVKVHYVGTL--ENGTKFDSSRDRGDQFSFNLGRG---NVIKGWDLGVATMTKGEVAEFT 89
Query: 351 C 351
Sbjct: 90 I 90
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 38.4 bits (89), Expect = 0.007
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDS 816
++KA F G+ + + + +EA A+L+R +L
Sbjct: 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
Score = 36.8 bits (85), Expect = 0.026
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSI-HINRAAV 155
+LKE GN L+ A Y A + N + ++ + NRA
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRA------ITRNPLVAVYYTNRALC 47
Score = 35.3 bits (81), Expect = 0.068
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LKE GN L+ A Y A+
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAI 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 36.8 bits (86), Expect = 0.007
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
IK R+ A + + +A ++ LD
Sbjct: 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Score = 33.4 bits (77), Expect = 0.11
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTAL 134
+K GN ++ G+ A+ Y+ A+
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAI 43
Score = 33.4 bits (77), Expect = 0.11
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+K GN ++ G+ A+ Y+ A+
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAI 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 36.5 bits (85), Expect = 0.008
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
+ ++A R+ A + V A L D
Sbjct: 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102
Score = 35.3 bits (82), Expect = 0.023
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+ + +G + + A+ Y+ + + ++ + NRAA
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARG--YSNRAA 46
Score = 34.6 bits (80), Expect = 0.042
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+ + +G + + A+ Y+ +
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMI 31
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 35.8 bits (83), Expect = 0.012
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 98 LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
+++ EK KE GN+L+K G + A+ Y + Q N + + N+A
Sbjct: 1 MSQFEKQ------KEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVG--YSNKAM 46
Score = 35.0 bits (81), Expect = 0.022
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 428 LTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
+++ EK KE GN+L+K G + A+ Y +
Sbjct: 1 MSQFEKQ------KEQGNSLFKQGLYREAVHCYDQLI 31
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 35.2 bits (82), Expect = 0.014
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
+H H+ +L D T D S +P LG +V W+ + M GE K V
Sbjct: 11 VLHMHYTGKL--EDGTEFDSSLPQNQPFVFSLGTG---QVIKGWDQGLLGMCEGEKRKLV 65
Query: 351 C 351
Sbjct: 66 I 66
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 36.8 bits (85), Expect = 0.016
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 35/143 (24%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFK-LEVWETLVKHMSIGEISKFVCD 352
T H+ +S +D+ +P++LVLGK+ K L V M GE +
Sbjct: 69 TCFLHYRAWTKNSQ-HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVG 127
Query: 353 KSLVSAYPFVSKTLRDAAKHSADGTEQSKRHCCGVQMHTGYEDLNELLKKSQDLTFTIEL 412
L AY G E G + + DL + +E+
Sbjct: 128 WEL--AY----------------GKE-------------GNFSFPNVPPMA-DLLYEVEV 155
Query: 413 LQVESPEEYEQESWQLTEAEKLA 435
+ + +E + +T E++
Sbjct: 156 IGFDETKE-GKARSDMTVEERIG 177
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 35.3 bits (82), Expect = 0.022
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H+ + D D SR GKP Q LG EV W+ V M++GE + F
Sbjct: 45 KVTVHYDGRF--PDGKQFDSSRSRGKPFQFTLGAG---EVIKGWDQGVATMTLGEKALFT 99
Query: 351 C 351
Sbjct: 100 I 100
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 34.9 bits (81), Expect = 0.028
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
KA R G A ++ EA A K+ LD
Sbjct: 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Score = 34.9 bits (81), Expect = 0.036
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSI-HINRAA 154
+LK +GN K N + A+ Y A+ LN ++ NRAA
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIE------LNPANAVYFCNRAA 54
Score = 33.7 bits (78), Expect = 0.074
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LK +GN K N + A+ Y A+
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAI 39
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 35.1 bits (81), Expect = 0.045
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALDST 817
KA R G A ++ + + A ++ +
Sbjct: 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 33.9 bits (78), Expect = 0.098
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAA 154
KLK +GN A+D Y+ AL N ++ NRAA
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIY--LSNRAA 53
Score = 33.9 bits (78), Expect = 0.100
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
KLK +GN A+D Y+ AL
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQAL 38
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 34.2 bits (79), Expect = 0.063
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAV 155
K KE GN YK + AL Y A N + N+AAV
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTY--ITNQAAV 47
Score = 33.8 bits (78), Expect = 0.064
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
K KE GN YK + AL Y A
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAK 31
Score = 30.0 bits (68), Expect = 1.5
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 786 KALFRRGKAHMNVWNCEEAGADLKRVAALDST 817
KA R G ++ ++A + A T
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 33.4 bits (77), Expect = 0.088
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H T L + T + + + LG +V + V M +GE +
Sbjct: 35 VVTVHLQTSL--ENGTRVQEEP----ELVFTLGDC---DVIQALDLSVPLMDVGETAMVT 85
Query: 351 CDKSLVSAY 359
D Y
Sbjct: 86 ADSKY--CY 92
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 33.4 bits (77), Expect = 0.095
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSI-HINRAAV 155
K+ GN YK + + A Y A+ L+ + N+AAV
Sbjct: 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE------LDPSNITFYNNKAAV 51
Score = 32.6 bits (75), Expect = 0.16
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
K+ GN YK + + A Y A+
Sbjct: 10 AEKDLGNAAYKQKDFEKAHVHYDKAI 35
Score = 28.0 bits (63), Expect = 7.3
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 786 KALFRRGKAHMNVWNCEEAGADLKRVAALDST 817
KA+ R G A + A R +
Sbjct: 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.4 bits (79), Expect = 0.11
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
TV H+ L +D D S+ P VLG V W+ V+ M +G + +
Sbjct: 124 TVSVHYTGWL--TDGQKFDSSKDRNDPFAFVLGGG---MVIKGWDEGVQGMKVGGVRRLT 178
Query: 351 C 351
Sbjct: 179 I 179
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 33.1 bits (76), Expect = 0.13
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H T L + T + + + LG +V + V M +GE +
Sbjct: 39 VVTVHLQTSL--ENGTRVQEEP----ELVFTLGDC---DVIQALDLSVPLMDVGETAMVT 89
Query: 351 CDKSLVSAY 359
D Y
Sbjct: 90 ADSKY--CY 96
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 33.0 bits (76), Expect = 0.13
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 294 TVHFHFVTQLCDSDNTILDDS--RKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISK 348
+ H+ L + D ++ + G+P+ LG E W+ +K M +GE K
Sbjct: 34 LMLVHYEGYL-EKDGSLFHSTHKHNNGQPIWFTLGIL---EALKGWDQGLKGMCVGEKRK 89
Query: 349 FVCDKSLVSAY 359
+ +L Y
Sbjct: 90 LIIPPAL--GY 98
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 34.7 bits (80), Expect = 0.15
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 102 EKLASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSI-HINRAAV 155
+ +A + K E G L AG + AL ++ A+ + I + RA V
Sbjct: 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRRATV 69
Score = 34.3 bits (79), Expect = 0.19
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 432 EKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
+ +A + K E G L AG + AL ++ A+
Sbjct: 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAV 53
Score = 32.7 bits (75), Expect = 0.56
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 18/162 (11%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALDSTMLGPVSSMLKQLSSKLVSAYPFVSK 842
D A +RG + +EA D K+V + + + + + S + +
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 843 TLR-----DAAKHSADGTEQSKRHCCGVQMHTG--YEDLNELLKKSQDLTFTIE-KPNDE 894
AA D + ++ + E K DL + K ++
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211
Query: 895 DWKKLNDLKIPILLNYSQCKLDQKDYYSVIEHTTTVLTYDPE 936
+ S D+ + L D +
Sbjct: 212 E----------AFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Score = 30.4 bits (69), Expect = 3.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
DN+ AL R +A++ +EA D + +
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 34.7 bits (80), Expect = 0.17
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
IK +RR ++M + A D + V +
Sbjct: 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104
Score = 30.4 bits (69), Expect = 2.7
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAV 155
+LK N +KA + + A+ YS A+ + NR+
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLA 49
Score = 29.7 bits (67), Expect = 5.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
+LK N +KA + + A+ YS A+
Sbjct: 8 ELKTQANDYFKAKDYENAIKFYSQAI 33
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 33.0 bits (76), Expect = 0.21
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSIGEISKFV 350
V HF L D T + +R GKP LG E E + + +G+ + F
Sbjct: 30 AVLVHF--TLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 32.1 bits (73), Expect = 0.41
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
V H T L + T + + + LG +V + V M +GE +
Sbjct: 65 VVTVHLQTSL--ENGTRVQEEP----ELVFTLGDC---DVIQALDLSVPLMDVGETAMVT 115
Query: 351 CDKSLVSAY 359
D Y
Sbjct: 116 ADSKY--CY 122
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 31.8 bits (73), Expect = 0.48
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 284 DLEDINSICLTVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEVWETLVKHMSI 343
DLE I + ++ + ++I+ DS +P++ ++G + E V I
Sbjct: 5 DLESIKQA---ALIEY--EVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQI 59
Query: 344 GE 345
GE
Sbjct: 60 GE 61
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 31.4 bits (72), Expect = 0.57
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGEISKFV 350
TV H+ L +D D S+ P VLG V W+ V+ M +G + +
Sbjct: 48 TVSVHYTGWL--TDGQKFDSSKDRNDPFAFVLGGG---MVIKGWDEGVQGMKVGGVRRLT 102
Query: 351 CDKSLVSAY 359
L Y
Sbjct: 103 IPPQL--GY 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.4 bits (74), Expect = 0.77
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 110 LKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAV 155
LK+ GN ++ A+ Y+ AL L + N +A
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALE------LKEDPVFYSNLSAC 48
Score = 30.9 bits (70), Expect = 2.5
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 66 SNLMKRYELDYAQIGQLLQVESPEEYEQESWQLTEAEKLAS--IPKLKEDGNTLYKAGNI 123
SNL KR Y + + ++ +E++ + E EKL L+ G + +
Sbjct: 195 SNLYKRSPESYDKADESFT-KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253
Query: 124 QGALDKYSTALGYLEQLMLNSMFSIHINRAAV 155
GA + A + L + +I A +
Sbjct: 254 LGAHEDIKKA------IELFPRVNSYIYMALI 279
Score = 30.5 bits (69), Expect = 3.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 440 LKEDGNTLYKAGNIQGALDKYSTAL 464
LK+ GN ++ A+ Y+ AL
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWAL 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 30.9 bits (71), Expect = 0.97
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F FV D + T D RK ++VL G++ ++++ +T
Sbjct: 19 ALTLQFMYDEFVE---DYEPTKADSYRK-----KVVLDGEEVQIDILDT 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 31.8 bits (73), Expect = 1.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 109 KLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSIHINRAAV 155
K K +GN YKA A++ Y+ A L+ + NRAA
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWE------LHKDITYLNNRAAA 47
Score = 28.7 bits (65), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 439 KLKEDGNTLYKAGNIQGALDKYSTAL 464
K K +GN YKA A++ Y+ A
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAW 32
Score = 28.7 bits (65), Expect = 7.9
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALDS 816
+ ++A R+ A + V A L D+
Sbjct: 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 294 TVHFHFVTQLC-----DSDNTILDDSRKLGKPMQLVLGKKFKLEV---WETLVKHMSIGE 345
VH + L D++ +K KP+ +G +V W+ + MS GE
Sbjct: 25 VVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG---KVIRGWDEALLTMSKGE 81
Query: 346 ISKFVC 351
++
Sbjct: 82 KARLEI 87
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.2 bits (70), Expect = 1.1
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 178 VPPAEFTRILAA-----KKENLHKY------PFRSET-----PPGEYLFDGSYYLESIDD 221
VPP RI++ K+ K+ PF E PP E LF + +++ +D
Sbjct: 141 VPP--LIRIVSGLELSDTKQKGKKFLVIAYEPF--ENIAIELPPNEILFSENNDMDNNND 196
Query: 222 FHRRHYKKYEAGTAWPENVGILGIEFYFPSQYVDQTEL 259
KK T W + ++F+F +Q ++
Sbjct: 197 GVDELNKKC---TFWDAISKLYYVQFFFKQAEQEQADV 231
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 31.0 bits (71), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F FV D + T D RK ++VL G++ ++++ +T
Sbjct: 33 ALTLQFMYDEFVE---DYEPTKADSYRK-----KVVLDGEEVQIDILDT 73
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F FV D + T D RK ++VL G++ ++++ +T
Sbjct: 29 ALTLQFMYDEFVE---DYEPTKADSYRK-----KVVLDGEEVQIDILDT 69
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 31.0 bits (71), Expect = 1.4
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
L F F D T+ + K + L +F L + +T
Sbjct: 39 SLAHQFVEGEFSE---GYDPTVENTYSK-----IVTLGKDEFHLHLVDT 79
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 31.5 bits (72), Expect = 1.5
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 105 ASIPKLKEDGNTLYKAGNIQGALDKYSTALGYLEQLMLNSMFSI-HINRAAV 155
A + K E G L AG + AL ++ A + + I + RA V
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAA------VDGDPDNYIAYYRRATV 46
Score = 31.1 bits (71), Expect = 1.7
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 103 KLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 134
++ + KL E L + G A KY + +
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVM 261
Score = 31.1 bits (71), Expect = 1.7
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 433 KLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
++ + KL E L + G A KY + +
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVM 261
Score = 30.3 bits (69), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 435 ASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
A + K E G L AG + AL ++ A+
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAV 30
Score = 29.9 bits (68), Expect = 4.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 783 DNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
DN+ AL R +A++ +EA D + +
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336
Score = 29.2 bits (66), Expect = 6.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 782 SDNIKALFRRGKAHMNVWNCEEAGADLKRVAALD 815
D A +RG + +EA D K+V +
Sbjct: 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 30.5 bits (70), Expect = 1.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LTV F FV D TI D RK Q+ + ++ LE+ +T
Sbjct: 18 ALTVQFVQGIFVE---KYDPTIEDSYRK-----QVEVDCQQCMLEILDT 58
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 30.6 bits (70), Expect = 1.7
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F FV D TI + K + + G+++ L++ +T
Sbjct: 21 SLTIQFVEGQFVD---SYDPTIENTFTK-----LITVNGQEYHLQLVDT 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 30.1 bits (69), Expect = 1.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ HFV + D TI D RK Q+V+ G+ L++ +T
Sbjct: 18 ALTIQLIQNHFVD---ECDPTIEDSYRK-----QVVIDGETCLLDILDT 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 31.2 bits (71), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 89 EEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 134
E + L+ +++ A +LK GN + A N A+ Y A+
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI 52
Score = 31.2 bits (71), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 419 EEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGNIQGALDKYSTAL 464
E + L+ +++ A +LK GN + A N A+ Y A+
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI 52
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 30.3 bits (69), Expect = 2.2
Identities = 5/50 (10%), Positives = 18/50 (36%), Gaps = 13/50 (26%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDS-RKLGKPMQLVL-GKKFKLEVWET 336
L F + + +D+ + ++++ ++ L V++
Sbjct: 38 TLAGTFGGLQGDS---AHEPENPEDTYER-----RIMVDKEEVTLVVYDI 79
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 29.3 bits (66), Expect = 2.5
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 294 TVHFHFVTQLCDSDNTILDDSRKLGKPMQLVLGKKFKLEV---WE------TLVKHMSIG 344
+ H+V +L + + D S GKP+ +G EV W+ + M G
Sbjct: 32 LIKAHYVGKL--ENGKVFDSSYNRGKPLTFRIGVG---EVIKGWDQGILGSDGIPPMLTG 86
Query: 345 EISKFVC 351
Sbjct: 87 GKRTLRI 93
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 29.9 bits (68), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ HFV + D TI D RK Q+V+ G+ L++ +T
Sbjct: 19 ALTIQLIQNHFVD---EYDPTIEDSYRK-----QVVIDGETCLLDILDT 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 29.9 bits (68), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ HFV + D TI D RK Q+V+ G+ L++ +T
Sbjct: 36 ALTIQLIQNHFVD---EYDPTIEDSYRK-----QVVIDGETCLLDILDT 76
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 29.4 bits (67), Expect = 3.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F +FV+ D D TI D K + G +L++ +T
Sbjct: 24 ALTIQFIQSYFVS---DYDPTIEDSYTK-----ICSVDGIPARLDILDT 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 29.4 bits (67), Expect = 3.4
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
L + F F T+ D R+ + L++ +T
Sbjct: 18 SLVLRFVKGTFRE---SYIPTVEDTYRQ-----VISCDKSICTLQITDT 58
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND;
HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Length = 65
Score = 27.3 bits (60), Expect = 3.9
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 319 KPMQLVLGKKFKLEVWETLVKHMSIGEISKFVCD 352
+P++L L ++F + + T V++MS + F+
Sbjct: 3 QPIELSLEQQFSIRSFATQVQNMSHDQAKDFLVK 36
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 29.2 bits (66), Expect = 4.0
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 564 GYRAKAAKL---TGKELSLGDFD----AVLF---HTPYCKLVQKSLARLAYNDF------ 607
A+L G L F AV+F H PY K L LA +
Sbjct: 10 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALA-ERYRGKVAF 68
Query: 608 --ISATDRSQYEGAEAFAHIK 626
I+A D +Y +A +
Sbjct: 69 VGINANDYEKYP-EDAPEKMA 88
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 29.0 bits (66), Expect = 4.2
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 11/48 (22%)
Query: 292 CLTVHF--HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
L F + +V+ G++ L V++
Sbjct: 17 ALARIFGGVEDG---PEAEAAGHTYDR-----SIVVDGEEASLMVYDI 56
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 29.9 bits (68), Expect = 4.7
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 393 YEDLNELLKKSQDLTFTIELLQVESPEEYEQESWQLTEAEKLASIPKLKEDGNTLYKAGN 452
YE+ ++LK S+ EL Q E + + K + +
Sbjct: 573 YEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEH 632
Query: 453 IQ--GALDKYSTALGYLEQLM--LKQT---FVNRTVKP 483
+ G + S L LM L T +V R +KP
Sbjct: 633 KKTVGHQFRNS-----LHLLMETLNATTPHYV-RCIKP 664
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 29.1 bits (66), Expect = 4.7
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
L + F F TI D R+ + L++ +T
Sbjct: 23 SLVLRFVKGTFRD---TYIPTIEDTYRQ-----VISCDKSVCTLQITDT 63
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 28.7 bits (65), Expect = 6.6
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 292 CLTVHF---HFVTQLCDSDNTILDDSRKLGKPMQLVL-GKKFKLEVWET 336
LT+ F FV D D TI D K + + L+V +T
Sbjct: 33 ALTIQFFQKIFVD---DYDPTIEDSYLK-----HTEIDNQWAILDVLDT 73
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein,
NPPSFA, national project protein structural and
functional analyses; 1.60A {Geobacillus kaustophilus}
Length = 196
Score = 28.6 bits (64), Expect = 8.2
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 564 GYRAKAAKL----TGKELSLGDFDA-----VLF---HTPYCKLVQKSLARLAYNDF---- 607
G +A L G + L D + ++F H P+ K VQ L RLA ND+
Sbjct: 21 GKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLA-NDYMPKG 79
Query: 608 -----ISATDRSQYEG-----AEAFAHIKNLEDTY 632
I++ D QY + A Y
Sbjct: 80 VSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPY 114
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 114 GNTLYKAGNIQGALDKYSTAL 134
GN K G+ Q AL+ Y +A+
Sbjct: 42 GNAYRKLGDWQKALNNYQSAI 62
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 444 GNTLYKAGNIQGALDKYSTAL 464
GN K G+ Q AL+ Y +A+
Sbjct: 42 GNAYRKLGDWQKALNNYQSAI 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,296,113
Number of extensions: 867746
Number of successful extensions: 2279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2230
Number of HSP's successfully gapped: 202
Length of query: 945
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 842
Effective length of database: 3,825,930
Effective search space: 3221433060
Effective search space used: 3221433060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)