BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11267
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 22/120 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
+IGVEGGHS+ +S+ VLR Y+LG+RYLTLTH+C TPW
Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180
Query: 39 YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
VV+E NRLG+LIDL+H SV TM+ L +S APVIFSHSSA+++C S RNVPD VL+LV
Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240
>pdb|3ID7|A Chain A, Crystal Structure Of Renal Dipeptidase From Streptomyces
Coelicolor A3(2)
pdb|3K5X|A Chain A, Crystal Structure Of Dipeptidase From Streptomics
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Ala-D-Asp At 1.4a Resolution.
pdb|3ITC|A Chain A, Crystal Structure Of Sco3058 With Bound Citrate And
Glycerol
pdb|3ISI|X Chain X, Crystal Structure Of Sco3058 With Bound Inhibitor
L-Ala-L-Asp Phosphinodipeptide
pdb|3S2J|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Ala
pdb|3S2L|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Glu
pdb|3S2M|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Phe-D-Asp
pdb|3S2N|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Tyr-D-Asp
Length = 400
Score = 117 bits (292), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 17/113 (15%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW-----------------YLVVR 43
++G EGGHS+ NS+A LR Y LGVRY+TLTH W VVR
Sbjct: 119 LMGAEGGHSIDNSLATLRALYALGVRYMTLTHNDNNAWADSATDEPGVGGLSAFGREVVR 178
Query: 44 ECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLK 96
E NR GML+DLSH + TMR L+ S+APVIFSHSS+ A+C PRN+PD VL+
Sbjct: 179 EMNREGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLE 231
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
pdb|3LY0|B Chain B, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
Length = 364
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 22/120 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPT------PWYL-------------- 40
++ +EG ++G + L +F+ LG+R L + PT P+
Sbjct: 135 IMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAG 194
Query: 41 --VVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
+V ECNRL +++DLSH + + V +S AP++ +HS+A A+ PS RN+ D L ++
Sbjct: 195 RRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMI 254
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
pdb|3FDG|B Chain B, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
Length = 355
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 22/120 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPT------PWYL-------------- 40
++ +EG ++G + L +F+ LG+R L + PT P+
Sbjct: 133 IMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAG 192
Query: 41 --VVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
+V ECNRL +++DLSH + + V +S AP++ +HS+A A+ PS RN+ D L ++
Sbjct: 193 RRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMI 252
>pdb|2RAG|A Chain A, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|B Chain B, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|C Chain C, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|D Chain D, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
Length = 417
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 2 IGVEGGHSLGNSMAVLRMFYKLGVRYLTLTH--------ACPTP----WY----LVVR-- 43
+ +E +G ++++ FYK G+R H + P W L +R
Sbjct: 156 VSMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADSSTDPKGKIWNGYSPLGLRWL 215
Query: 44 -ECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
E NRLG++ID+SH S + + +S AP+I SHS A+ PRN+ D LK +
Sbjct: 216 AEANRLGIVIDVSHASDDVVDQSVALSKAPIIASHSGPKAVYDHPRNLDDARLKKI 271
>pdb|3B40|A Chain A, Crystal Structure Of The Probable Dipeptidase Pvdm From
Pseudomonas Aeruginosa
Length = 417
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 42 VRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
V N LG++ID+S S + + V +S AP++ SHS+ AL RN+ D ++L+
Sbjct: 199 VERLNDLGVIIDVSQMSTKALEQVAALSRAPIVASHSAPRALVDIKRNLSDHEMQLI 255
>pdb|2I5G|A Chain A, Crystal Strcuture Of Amidohydrolase From Pseudomonas
Aeruginosa
pdb|2I5G|B Chain B, Crystal Strcuture Of Amidohydrolase From Pseudomonas
Aeruginosa
Length = 325
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLV------------------V 42
+ G + H+ + + + +F +LGV + C LV V
Sbjct: 89 LYGFQNAHAFEDQIGYVEVFKQLGV---GIVQXCYNTQNLVGTGCYERDGGLSGFGREIV 145
Query: 43 RECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
E NR+G+ DLSH +T V+ S PV +SH L PRN D LK +
Sbjct: 146 AEXNRVGIXCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFI 201
>pdb|3LU2|A Chain A, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
pdb|3LU2|B Chain B, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
Length = 311
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 VVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLK 96
++ N + D+SH SV+ L + VI SHSSA A+C PRN+ D +K
Sbjct: 160 IIHLLNERKVFTDVSHLSVKAFWETLE-QAEFVIASHSSAKAICAHPRNLDDEQIK 214
>pdb|3NEH|A Chain A, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
pdb|3NEH|B Chain B, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
Length = 318
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 VVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLK 96
++ N + D+SH SV+ L + VI SHS+A A+C PRN+ D +K
Sbjct: 159 IIHLLNERKVFTDVSHLSVKAFWETLE-QAEFVIASHSNAKAICSHPRNLDDEQIK 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,940,732
Number of Sequences: 62578
Number of extensions: 93325
Number of successful extensions: 229
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)