Query psy11267
Match_columns 103
No_of_seqs 128 out of 1033
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01244 Peptidase_M19: Membra 100.0 1.2E-43 2.5E-48 277.9 7.4 101 1-101 107-225 (320)
2 COG2355 Zn-dependent dipeptida 100.0 9.2E-43 2E-47 273.0 8.7 101 1-101 98-214 (313)
3 cd01301 rDP_like renal dipepti 100.0 3.5E-42 7.6E-47 268.7 10.0 101 1-101 103-219 (309)
4 KOG4127|consensus 100.0 1.9E-37 4.1E-42 246.5 8.1 100 1-100 175-296 (419)
5 PRK13397 3-deoxy-7-phosphohept 93.0 0.61 1.3E-05 36.1 7.4 89 14-102 139-247 (250)
6 PF13344 Hydrolase_6: Haloacid 92.8 0.3 6.5E-06 32.2 4.8 64 5-68 11-76 (101)
7 cd01292 metallo-dependent_hydr 90.3 3 6.5E-05 29.6 8.1 77 14-100 105-194 (275)
8 PRK13753 dihydropteroate synth 88.2 4.5 9.7E-05 31.8 8.3 44 36-79 83-128 (279)
9 COG2876 AroA 3-deoxy-D-arabino 87.7 1.2 2.7E-05 35.2 4.8 63 40-102 207-277 (286)
10 PRK12457 2-dehydro-3-deoxyphos 87.5 2.3 4.9E-05 33.7 6.2 63 40-102 183-265 (281)
11 TIGR01362 KDO8P_synth 3-deoxy- 85.6 6 0.00013 31.0 7.6 86 15-102 134-249 (258)
12 PRK05198 2-dehydro-3-deoxyphos 85.4 5.3 0.00011 31.3 7.2 87 14-102 141-257 (264)
13 cd01311 PDC_hydrolase 2-pyrone 85.2 6.4 0.00014 29.5 7.5 68 13-81 82-157 (263)
14 COG0647 NagD Predicted sugar p 83.1 7.5 0.00016 30.3 7.2 46 4-49 20-65 (269)
15 PRK13618 psbV cytochrome c-550 80.3 1.4 2.9E-05 32.2 2.1 20 83-102 126-145 (163)
16 PRK13617 psbV cytochrome c-550 78.9 1.9 4E-05 31.8 2.4 30 73-102 121-152 (170)
17 PRK10444 UMP phosphatase; Prov 77.0 5.8 0.00013 30.0 4.8 51 5-55 14-64 (248)
18 PRK08673 3-deoxy-7-phosphohept 74.2 27 0.00059 28.0 8.1 89 14-102 217-325 (335)
19 PF14495 Cytochrom_C550: Cytoc 71.8 2.4 5.3E-05 30.2 1.5 20 83-102 99-118 (135)
20 PLN03033 2-dehydro-3-deoxyphos 71.8 29 0.00063 27.7 7.6 86 15-102 148-268 (290)
21 TIGR01361 DAHP_synth_Bsub phos 70.1 34 0.00074 26.2 7.6 89 14-102 149-257 (260)
22 CHL00133 psbV photosystem II c 70.0 4.3 9.2E-05 29.6 2.4 27 76-102 117-145 (163)
23 PLN02645 phosphoglycolate phos 69.8 12 0.00025 29.1 5.0 51 5-55 41-91 (311)
24 PRK09875 putative hydrolase; P 69.1 54 0.0012 25.7 10.2 87 13-99 165-283 (292)
25 PF10087 DUF2325: Uncharacteri 68.3 3.2 6.9E-05 26.8 1.4 29 54-82 59-88 (97)
26 PRK13620 psbV cytochrome c-550 68.0 4.7 0.0001 30.7 2.4 26 77-102 170-197 (215)
27 TIGR03045 PS_II_C550 cytochrom 67.9 4.2 9.2E-05 29.5 2.0 20 83-102 125-144 (159)
28 TIGR01457 HAD-SF-IIA-hyp2 HAD- 66.6 18 0.00038 27.1 5.3 49 5-53 14-62 (249)
29 PRK09061 D-glutamate deacylase 66.3 48 0.0011 27.7 8.3 69 14-83 168-258 (509)
30 COG1180 PflA Pyruvate-formate 65.5 36 0.00079 26.0 6.9 58 40-102 126-199 (260)
31 TIGR01452 PGP_euk phosphoglyco 65.5 18 0.00039 27.4 5.2 51 5-55 15-65 (279)
32 PRK13622 psbV cytochrome c-550 64.7 7 0.00015 29.0 2.7 26 77-102 128-155 (180)
33 TIGR01458 HAD-SF-IIA-hyp3 HAD- 64.4 21 0.00046 26.8 5.4 43 9-51 22-64 (257)
34 PRK11145 pflA pyruvate formate 63.8 56 0.0012 24.0 7.7 93 4-102 76-188 (246)
35 PF11829 DUF3349: Protein of u 63.7 5 0.00011 26.9 1.6 16 87-102 33-48 (96)
36 PRK13621 psbV cytochrome c-550 63.0 5.8 0.00013 29.2 2.0 18 85-102 134-151 (170)
37 PRK13398 3-deoxy-7-phosphohept 62.9 45 0.00097 25.8 7.0 89 14-102 151-259 (266)
38 COG3589 Uncharacterized conser 62.8 18 0.00039 29.6 4.9 52 6-57 11-72 (360)
39 PRK12595 bifunctional 3-deoxy- 60.1 57 0.0012 26.4 7.4 93 10-102 238-350 (360)
40 TIGR02990 ectoine_eutA ectoine 60.0 57 0.0012 24.8 7.0 76 7-82 102-194 (239)
41 TIGR03046 PS_II_psbV2 photosys 58.2 7.8 0.00017 28.1 1.9 18 85-102 123-140 (155)
42 PRK11170 nagA N-acetylglucosam 56.8 47 0.001 26.8 6.4 64 12-78 151-217 (382)
43 PF02729 OTCace_N: Aspartate/o 55.3 49 0.0011 23.1 5.6 59 16-74 57-120 (142)
44 PF13442 Cytochrome_CBB3: Cyto 54.0 9.2 0.0002 22.5 1.5 20 83-102 48-67 (67)
45 PRK11172 dkgB 2,5-diketo-D-glu 53.6 42 0.00091 25.2 5.4 82 11-101 108-198 (267)
46 PRK12822 phospho-2-dehydro-3-d 53.5 15 0.00033 30.0 3.1 44 16-59 196-271 (356)
47 PF09587 PGA_cap: Bacterial ca 53.3 33 0.00071 25.5 4.7 45 8-52 59-108 (250)
48 TIGR00221 nagA N-acetylglucosa 53.0 42 0.00092 27.1 5.6 65 12-78 151-219 (380)
49 PRK13619 psbV cytochrome c-550 52.4 18 0.00038 26.5 3.0 21 82-102 124-144 (160)
50 PF00128 Alpha-amylase: Alpha 51.9 27 0.00058 25.5 4.0 57 14-70 7-92 (316)
51 KOG3040|consensus 51.6 37 0.00079 26.5 4.7 81 2-83 18-101 (262)
52 PRK13396 3-deoxy-7-phosphohept 51.2 1.1E+02 0.0024 24.9 7.7 89 14-102 225-334 (352)
53 PRK09140 2-dehydro-3-deoxy-6-p 50.9 94 0.002 22.9 6.8 23 14-36 25-47 (206)
54 TIGR00474 selA seryl-tRNA(sec) 50.6 18 0.0004 29.9 3.2 56 46-102 398-453 (454)
55 COG4464 CapC Capsular polysacc 50.1 19 0.00042 28.0 3.0 35 5-39 14-53 (254)
56 KOG2882|consensus 49.8 45 0.00097 26.8 5.1 48 4-51 34-81 (306)
57 cd05014 SIS_Kpsf KpsF-like pro 48.5 27 0.00059 22.7 3.3 27 14-40 64-90 (128)
58 PF06567 Neural_ProG_Cyt: Neur 48.4 11 0.00025 26.1 1.4 24 75-99 36-59 (120)
59 PRK05451 dihydroorotase; Provi 48.1 1.1E+02 0.0023 24.1 7.1 68 12-80 82-178 (345)
60 cd00762 NAD_bind_malic_enz NAD 47.9 47 0.001 25.8 4.9 63 40-102 123-218 (254)
61 PTZ00292 ribokinase; Provision 47.9 33 0.00072 26.0 4.1 43 13-57 55-98 (326)
62 PRK13288 pyrophosphatase PpaX; 47.7 29 0.00063 24.7 3.5 29 7-35 158-186 (214)
63 PF00034 Cytochrom_C: Cytochro 47.5 12 0.00027 22.0 1.4 14 89-102 74-87 (91)
64 PF01261 AP_endonuc_2: Xylose 47.3 90 0.002 21.3 6.4 64 17-80 1-94 (213)
65 cd04747 OYE_like_5_FMN Old yel 47.0 20 0.00044 28.9 2.9 61 40-101 82-145 (361)
66 PRK04311 selenocysteine syntha 46.6 23 0.0005 29.5 3.2 55 47-102 404-458 (464)
67 PRK05718 keto-hydroxyglutarate 45.6 52 0.0011 24.6 4.7 32 14-46 30-61 (212)
68 TIGR03537 DapC succinyldiamino 44.8 46 0.00099 25.6 4.5 75 13-88 125-214 (350)
69 PRK09912 L-glyceraldehyde 3-ph 44.7 52 0.0011 25.8 4.8 74 9-82 145-228 (346)
70 cd05312 NAD_bind_1_malic_enz N 43.9 56 0.0012 25.7 4.8 63 40-102 122-217 (279)
71 COG0384 Predicted epimerase, P 43.3 16 0.00035 28.8 1.8 25 78-102 19-43 (291)
72 TIGR01182 eda Entner-Doudoroff 43.2 1.4E+02 0.003 22.3 7.2 61 14-76 23-86 (204)
73 COG0656 ARA1 Aldo/keto reducta 43.0 24 0.00051 27.8 2.6 44 10-53 119-187 (280)
74 cd01299 Met_dep_hydrolase_A Me 42.5 1.5E+02 0.0032 22.5 7.3 77 14-101 123-214 (342)
75 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.2 39 0.00084 21.9 3.2 26 14-39 63-88 (126)
76 cd01305 archeal_chlorohydrolas 41.0 60 0.0013 24.0 4.5 52 38-101 127-185 (263)
77 cd05561 Peptidases_S8_4 Peptid 40.6 89 0.0019 23.1 5.3 42 15-56 84-127 (239)
78 smart00854 PGA_cap Bacterial c 40.4 1.5E+02 0.0032 21.8 6.6 51 10-60 59-114 (239)
79 PTZ00317 NADP-dependent malic 40.2 60 0.0013 28.1 4.8 63 40-102 398-493 (559)
80 PF01113 DapB_N: Dihydrodipico 39.9 45 0.00097 22.3 3.3 46 40-100 63-111 (124)
81 COG3453 Uncharacterized protei 39.8 98 0.0021 21.9 5.0 88 13-100 17-123 (130)
82 PRK12756 phospho-2-dehydro-3-d 39.5 35 0.00076 27.8 3.1 20 40-59 247-270 (348)
83 COG0294 FolP Dihydropteroate s 39.1 57 0.0012 25.3 4.2 62 40-101 95-160 (274)
84 PF12720 DUF3807: Protein of u 39.0 19 0.00041 26.5 1.4 12 86-97 46-57 (172)
85 PF01081 Aldolase: KDPG and KH 38.6 1.5E+02 0.0033 21.9 6.3 65 11-76 20-86 (196)
86 PF07555 NAGidase: beta-N-acet 38.3 25 0.00054 27.9 2.1 21 14-34 94-114 (306)
87 cd07492 Peptidases_S8_8 Peptid 37.3 1.1E+02 0.0024 21.9 5.3 42 14-55 81-127 (222)
88 PRK05441 murQ N-acetylmuramic 36.9 1.1E+02 0.0024 23.9 5.5 26 14-39 148-173 (299)
89 cd07473 Peptidases_S8_Subtilis 36.6 97 0.0021 22.6 5.0 46 14-59 110-158 (259)
90 TIGR01460 HAD-SF-IIA Haloacid 36.6 99 0.0021 22.8 5.0 49 5-53 11-60 (236)
91 cd07491 Peptidases_S8_7 Peptid 36.4 84 0.0018 23.5 4.7 46 14-59 92-146 (247)
92 PF00106 adh_short: short chai 36.4 1.3E+02 0.0027 19.9 5.5 90 6-98 8-107 (167)
93 cd00423 Pterin_binding Pterin 35.9 1.9E+02 0.0041 21.8 8.5 41 40-80 87-130 (258)
94 PRK10281 hypothetical protein; 35.8 26 0.00056 27.3 1.8 26 77-102 17-42 (299)
95 COG2159 Predicted metal-depend 35.6 1.6E+02 0.0034 22.9 6.2 61 19-80 121-202 (293)
96 PRK13937 phosphoheptose isomer 35.1 84 0.0018 22.5 4.3 26 14-39 123-148 (188)
97 PF02567 PhzC-PhzF: Phenazine 35.0 17 0.00036 27.3 0.7 25 78-102 11-35 (281)
98 cd00854 NagA N-acetylglucosami 34.9 1.3E+02 0.0028 23.8 5.7 62 12-78 146-214 (374)
99 cd04734 OYE_like_3_FMN Old yel 34.9 84 0.0018 24.9 4.6 59 40-101 81-142 (343)
100 PRK08204 hypothetical protein; 34.7 85 0.0018 25.1 4.7 15 87-101 251-265 (449)
101 TIGR01496 DHPS dihydropteroate 34.2 2.1E+02 0.0045 21.8 8.0 40 40-79 86-127 (257)
102 TIGR02026 BchE magnesium-proto 34.2 2.4E+02 0.0052 23.4 7.4 60 10-69 283-362 (497)
103 cd07484 Peptidases_S8_Thermita 33.6 1.2E+02 0.0025 22.3 5.0 42 15-56 116-160 (260)
104 TIGR02402 trehalose_TreZ malto 33.5 79 0.0017 26.7 4.5 47 14-60 114-188 (542)
105 cd07489 Peptidases_S8_5 Peptid 33.4 71 0.0015 24.3 3.9 43 14-56 114-161 (312)
106 TIGR01456 CECR5 HAD-superfamil 33.4 64 0.0014 25.1 3.7 52 5-56 13-69 (321)
107 COG0125 Tmk Thymidylate kinase 33.3 95 0.0021 23.1 4.5 60 1-61 5-67 (208)
108 PRK14338 (dimethylallyl)adenos 32.7 1.1E+02 0.0024 25.1 5.2 42 9-50 185-237 (459)
109 PRK11613 folP dihydropteroate 32.6 2.4E+02 0.0053 22.0 9.0 39 40-78 101-141 (282)
110 PF01380 SIS: SIS domain SIS d 32.5 67 0.0014 20.6 3.2 26 14-39 70-95 (131)
111 cd07477 Peptidases_S8_Subtilis 32.4 1.3E+02 0.0029 21.3 5.0 44 15-58 87-133 (229)
112 cd07250 HPPD_C_like C-terminal 32.3 45 0.00098 24.0 2.5 41 16-56 97-146 (191)
113 COG2052 Uncharacterized protei 32.2 80 0.0017 20.7 3.4 32 24-55 16-47 (89)
114 PRK10076 pyruvate formate lyas 32.2 2.1E+02 0.0046 21.2 7.8 93 3-102 43-154 (213)
115 cd05311 NAD_bind_2_malic_enz N 32.1 97 0.0021 23.0 4.4 62 40-102 113-191 (226)
116 PRK13523 NADPH dehydrogenase N 31.8 1.4E+02 0.003 23.7 5.4 57 40-101 85-143 (337)
117 TIGR01454 AHBA_synth_RP 3-amin 31.8 60 0.0013 22.9 3.1 28 8-35 152-179 (205)
118 TIGR00670 asp_carb_tr aspartat 31.7 2.5E+02 0.0055 22.0 6.9 62 13-74 54-121 (301)
119 PRK04284 ornithine carbamoyltr 31.5 2.3E+02 0.0049 22.6 6.6 71 14-88 61-136 (332)
120 PLN00209 ribosomal protein S27 31.2 47 0.001 21.9 2.2 39 46-84 1-58 (86)
121 TIGR00756 PPR pentatricopeptid 31.1 39 0.00085 16.2 1.5 15 40-54 21-35 (35)
122 cd00452 KDPG_aldolase KDPG and 30.6 2E+02 0.0044 20.4 7.0 34 14-48 19-52 (190)
123 PRK13529 malate dehydrogenase; 30.5 1.1E+02 0.0023 26.7 4.8 63 40-102 399-494 (563)
124 PRK07455 keto-hydroxyglutarate 30.5 88 0.0019 22.6 3.8 23 14-36 27-49 (187)
125 PLN02607 1-aminocyclopropane-1 30.5 1.3E+02 0.0028 24.6 5.1 45 11-56 181-242 (447)
126 PRK03515 ornithine carbamoyltr 30.3 1.9E+02 0.0041 23.2 5.9 60 14-74 61-126 (336)
127 COG1509 KamA Lysine 2,3-aminom 30.1 74 0.0016 26.2 3.6 36 60-101 209-245 (369)
128 PF02421 FeoB_N: Ferrous iron 29.7 41 0.00089 24.0 1.9 56 7-78 88-143 (156)
129 cd01297 D-aminoacylase D-amino 29.4 2.3E+02 0.0051 22.6 6.4 69 14-83 166-254 (415)
130 cd07381 MPP_CapA CapA and rela 29.4 1.3E+02 0.0028 22.0 4.6 50 9-58 62-116 (239)
131 TIGR01290 nifB nitrogenase cof 29.3 3.3E+02 0.0071 22.5 8.6 60 3-64 83-151 (442)
132 TIGR01578 MiaB-like-B MiaB-lik 29.2 1.7E+02 0.0037 23.7 5.6 85 14-101 168-276 (420)
133 PRK06108 aspartate aminotransf 29.1 90 0.002 24.0 3.9 45 12-57 146-201 (382)
134 cd00739 DHPS DHPS subgroup of 28.9 2.6E+02 0.0057 21.3 8.7 40 40-79 87-129 (257)
135 PF09633 DUF2023: Protein of u 28.8 44 0.00095 22.7 1.8 37 21-57 10-46 (101)
136 smart00843 Ftsk_gamma This dom 28.8 28 0.0006 21.6 0.8 21 36-56 34-54 (63)
137 PLN02527 aspartate carbamoyltr 28.7 2.3E+02 0.005 22.3 6.1 63 13-75 54-123 (306)
138 PF01120 Alpha_L_fucos: Alpha- 28.6 79 0.0017 25.0 3.5 40 15-54 95-156 (346)
139 PRK08207 coproporphyrinogen II 28.6 3.5E+02 0.0075 22.7 7.4 67 3-69 258-345 (488)
140 PLN03129 NADP-dependent malic 28.5 1E+02 0.0022 26.9 4.4 63 40-102 418-513 (581)
141 TIGR00441 gmhA phosphoheptose 28.4 82 0.0018 21.7 3.2 26 14-39 96-121 (154)
142 PRK06015 keto-hydroxyglutarate 28.4 2.5E+02 0.0055 20.9 7.2 62 14-76 19-82 (201)
143 cd06599 GH31_glycosidase_Aec37 28.2 1.1E+02 0.0024 23.8 4.3 37 14-50 76-112 (317)
144 PRK12570 N-acetylmuramic acid- 28.0 2.2E+02 0.0048 22.2 5.9 26 14-39 144-169 (296)
145 CHL00183 petJ cytochrome c553; 28.0 46 0.001 21.5 1.8 17 86-102 84-100 (108)
146 smart00367 LRR_CC Leucine-rich 27.8 51 0.0011 16.0 1.6 13 88-100 13-25 (26)
147 PF13377 Peripla_BP_3: Peripla 27.7 1.6E+02 0.0035 19.2 4.5 35 17-51 1-41 (160)
148 COG0854 PdxJ Pyridoxal phospha 27.5 1.6E+02 0.0034 23.0 4.8 47 40-86 115-161 (243)
149 PF04909 Amidohydro_2: Amidohy 27.4 78 0.0017 22.7 3.1 68 13-81 86-175 (273)
150 cd05710 SIS_1 A subgroup of th 27.4 1E+02 0.0022 20.3 3.4 26 14-39 64-89 (120)
151 PF04481 DUF561: Protein of un 27.3 26 0.00056 27.2 0.5 20 6-27 81-100 (242)
152 PLN02543 pfkB-type carbohydrat 27.2 1.1E+02 0.0023 25.9 4.2 47 10-58 171-219 (496)
153 PRK08248 O-acetylhomoserine am 26.8 1.2E+02 0.0025 24.8 4.3 70 13-86 138-215 (431)
154 TIGR02456 treS_nterm trehalose 26.7 95 0.0021 26.0 3.8 54 14-67 31-113 (539)
155 PF03147 FDX-ACB: Ferredoxin-f 26.7 41 0.0009 21.4 1.4 19 84-102 63-81 (94)
156 cd02803 OYE_like_FMN_family Ol 26.6 38 0.00082 26.0 1.4 60 40-101 81-142 (327)
157 TIGR03217 4OH_2_O_val_ald 4-hy 26.5 1.7E+02 0.0038 23.2 5.1 86 13-102 89-181 (333)
158 COG3892 Uncharacterized protei 26.5 2.2E+02 0.0047 22.8 5.5 85 14-101 188-291 (310)
159 PF10566 Glyco_hydro_97: Glyco 26.4 1.5E+02 0.0032 23.2 4.6 42 16-57 111-158 (273)
160 cd02933 OYE_like_FMN Old yello 26.4 60 0.0013 25.7 2.5 62 40-101 81-153 (338)
161 PRK06687 chlorohydrolase; Vali 26.3 1.9E+02 0.0041 22.9 5.4 17 85-101 251-267 (419)
162 KOG1257|consensus 26.2 1.7E+02 0.0036 25.6 5.2 63 40-102 406-501 (582)
163 TIGR03820 lys_2_3_AblA lysine- 26.1 2.1E+02 0.0046 23.8 5.7 34 62-101 208-241 (417)
164 cd06598 GH31_transferase_CtsZ 26.1 1.3E+02 0.0029 23.4 4.3 37 14-50 73-109 (317)
165 TIGR00238 KamA family protein. 26.0 3.3E+02 0.0072 21.4 6.8 71 23-100 158-245 (331)
166 PRK12677 xylose isomerase; Pro 25.9 3.6E+02 0.0078 21.9 8.7 78 3-80 16-137 (384)
167 PRK13938 phosphoheptose isomer 25.9 94 0.002 22.8 3.3 26 14-39 130-155 (196)
168 TIGR03471 HpnJ hopanoid biosyn 25.8 1.7E+02 0.0037 23.9 5.1 57 13-69 286-362 (472)
169 TIGR03127 RuMP_HxlB 6-phospho 25.7 1E+02 0.0022 21.4 3.4 26 14-39 89-114 (179)
170 cd02963 TRX_DnaJ TRX domain, D 25.7 1.9E+02 0.0041 18.5 4.7 61 40-102 48-111 (111)
171 PRK09147 succinyldiaminopimela 25.6 1.3E+02 0.0029 23.4 4.3 44 12-56 154-208 (396)
172 COG0159 TrpA Tryptophan syntha 25.5 2.3E+02 0.005 22.2 5.5 64 4-69 72-146 (265)
173 PRK00414 gmhA phosphoheptose i 25.5 97 0.0021 22.4 3.3 26 14-39 128-153 (192)
174 COG0366 AmyA Glycosidases [Car 25.2 2E+02 0.0044 22.8 5.3 56 14-69 32-114 (505)
175 PRK02255 putrescine carbamoylt 25.2 2E+02 0.0044 23.0 5.3 58 14-75 58-124 (338)
176 PRK09997 hydroxypyruvate isome 25.1 2.8E+02 0.0061 20.3 9.7 65 15-79 19-107 (258)
177 TIGR00654 PhzF_family phenazin 24.9 52 0.0011 25.0 1.9 25 78-102 18-42 (297)
178 PRK15014 6-phospho-beta-glucos 24.6 1.1E+02 0.0025 25.5 3.9 45 15-59 73-135 (477)
179 COG0520 csdA Selenocysteine ly 24.4 1.4E+02 0.003 24.4 4.3 49 14-62 152-207 (405)
180 smart00812 Alpha_L_fucos Alpha 24.3 1.6E+02 0.0034 24.0 4.6 43 16-58 86-150 (384)
181 PRK01713 ornithine carbamoyltr 24.2 2.9E+02 0.0063 22.0 6.0 60 15-75 63-128 (334)
182 cd01945 ribokinase_group_B Rib 24.2 1.4E+02 0.0031 21.8 4.0 41 14-54 40-81 (284)
183 PRK06233 hypothetical protein; 24.1 67 0.0015 25.8 2.4 16 16-31 176-191 (372)
184 TIGR03540 DapC_direct LL-diami 24.0 1.2E+02 0.0025 23.6 3.7 75 13-88 153-245 (383)
185 PRK10376 putative oxidoreducta 24.0 1.2E+02 0.0027 23.0 3.7 24 10-33 143-167 (290)
186 KOG0204|consensus 23.9 3.2E+02 0.0069 25.6 6.6 84 16-102 597-716 (1034)
187 COG1069 AraB Ribulose kinase [ 23.8 1.2E+02 0.0026 26.3 3.9 62 9-78 395-464 (544)
188 cd05013 SIS_RpiR RpiR-like pro 23.8 1.2E+02 0.0027 19.2 3.3 26 14-39 77-102 (139)
189 PLN02875 4-hydroxyphenylpyruva 23.7 41 0.00088 27.8 1.1 43 14-56 274-330 (398)
190 TIGR01293 Kv_beta voltage-depe 23.7 2E+02 0.0043 22.1 4.9 23 9-31 127-150 (317)
191 PRK06107 aspartate aminotransf 23.7 1.8E+02 0.0039 22.8 4.8 88 12-100 154-265 (402)
192 KOG2492|consensus 23.6 2.2E+02 0.0049 24.4 5.4 35 4-38 245-279 (552)
193 PRK08912 hypothetical protein; 23.6 1.4E+02 0.0031 23.1 4.1 76 12-88 147-240 (387)
194 PRK13347 coproporphyrinogen II 23.6 4.1E+02 0.0089 21.7 7.5 57 13-69 151-228 (453)
195 cd00740 MeTr MeTr subgroup of 23.5 1.6E+02 0.0034 22.5 4.2 36 47-82 92-131 (252)
196 PRK00779 ornithine carbamoyltr 23.5 3.3E+02 0.0072 21.3 6.2 62 14-75 59-125 (304)
197 PRK13511 6-phospho-beta-galact 23.5 1.2E+02 0.0027 25.1 3.9 46 15-60 58-120 (469)
198 PRK12562 ornithine carbamoyltr 23.4 3.3E+02 0.0071 21.8 6.2 70 14-88 61-136 (334)
199 PRK06348 aspartate aminotransf 23.4 1.4E+02 0.0031 23.2 4.1 87 12-99 150-257 (384)
200 PF07745 Glyco_hydro_53: Glyco 23.3 1E+02 0.0022 24.8 3.2 18 40-57 114-131 (332)
201 PRK02289 4-oxalocrotonate taut 23.3 48 0.001 19.4 1.1 15 89-103 11-25 (60)
202 PLN02323 probable fructokinase 23.2 1.6E+02 0.0035 22.3 4.3 44 10-53 42-87 (330)
203 cd07476 Peptidases_S8_thiazoli 23.2 1.9E+02 0.004 21.9 4.6 40 15-54 97-143 (267)
204 smart00642 Aamy Alpha-amylase 23.1 1.3E+02 0.0029 21.2 3.6 46 14-59 22-97 (166)
205 cd07498 Peptidases_S8_15 Pepti 23.1 1.9E+02 0.0042 20.8 4.5 41 15-55 88-136 (242)
206 PRK11891 aspartate carbamoyltr 23.1 3.1E+02 0.0066 22.9 6.1 61 14-74 142-208 (429)
207 PRK13958 N-(5'-phosphoribosyl) 23.0 56 0.0012 24.1 1.7 19 84-102 31-49 (207)
208 TIGR01263 4HPPD 4-hydroxypheny 23.0 53 0.0011 25.8 1.6 17 40-56 284-300 (353)
209 cd07483 Peptidases_S8_Subtilis 23.0 1.8E+02 0.0038 22.1 4.5 44 15-58 132-180 (291)
210 PRK13697 cytochrome c6; Provis 23.0 54 0.0012 21.1 1.4 16 87-102 87-102 (111)
211 TIGR03356 BGL beta-galactosida 23.0 1.1E+02 0.0024 25.1 3.5 44 15-58 58-118 (427)
212 PF09851 SHOCT: Short C-termin 22.9 58 0.0013 17.0 1.3 14 12-25 3-16 (31)
213 cd02930 DCR_FMN 2,4-dienoyl-Co 22.9 1.1E+02 0.0025 24.0 3.5 56 40-101 81-138 (353)
214 TIGR03538 DapC_gpp succinyldia 22.9 1.5E+02 0.0033 23.1 4.2 39 13-52 154-201 (393)
215 TIGR00624 tag DNA-3-methyladen 22.9 96 0.0021 22.9 2.8 33 13-53 139-171 (179)
216 COG1411 Uncharacterized protei 22.8 1.8E+02 0.004 22.4 4.3 66 14-79 39-109 (229)
217 KOG0208|consensus 22.6 1.4E+02 0.0031 28.0 4.3 20 14-33 653-672 (1140)
218 PRK09121 5-methyltetrahydropte 22.6 75 0.0016 25.2 2.4 16 16-31 161-176 (339)
219 TIGR01698 PUNP purine nucleoti 22.6 2.2E+02 0.0047 21.8 4.8 84 14-100 72-170 (237)
220 COG1737 RpiR Transcriptional r 22.6 1.1E+02 0.0025 23.3 3.3 26 14-39 194-219 (281)
221 PF08532 Glyco_hydro_42M: Beta 22.6 63 0.0014 23.4 1.8 47 40-101 34-80 (207)
222 PRK06520 5-methyltetrahydropte 22.5 74 0.0016 25.5 2.4 16 16-31 175-190 (368)
223 PF01297 TroA: Periplasmic sol 22.4 3.2E+02 0.007 20.1 5.8 59 21-79 165-231 (256)
224 PLN00196 alpha-amylase; Provis 22.4 1.6E+02 0.0036 24.2 4.4 47 14-60 47-120 (428)
225 COG3722 MtlR Transcriptional r 22.4 69 0.0015 23.6 1.9 21 5-26 61-82 (174)
226 cd01172 RfaE_like RfaE encodes 22.3 1.6E+02 0.0034 21.8 4.0 44 10-53 39-83 (304)
227 PRK09513 fruK 1-phosphofructok 22.3 1.8E+02 0.0039 21.9 4.3 39 14-52 43-81 (312)
228 PRK14024 phosphoribosyl isomer 22.3 2.1E+02 0.0045 21.3 4.6 37 40-76 150-196 (241)
229 PRK13936 phosphoheptose isomer 22.3 1.2E+02 0.0026 21.9 3.3 27 14-40 128-154 (197)
230 TIGR03872 cytochrome_MoxG cyto 22.2 55 0.0012 22.7 1.4 16 87-102 103-118 (133)
231 PRK14805 ornithine carbamoyltr 22.2 3.4E+02 0.0075 21.2 6.0 61 14-75 54-120 (302)
232 cd05007 SIS_Etherase N-acetylm 22.2 2.9E+02 0.0062 21.0 5.4 26 14-39 135-160 (257)
233 cd07474 Peptidases_S8_subtilis 22.2 2.1E+02 0.0045 21.2 4.7 41 15-55 110-155 (295)
234 TIGR01449 PGP_bact 2-phosphogl 22.1 1.3E+02 0.0029 20.9 3.4 29 6-34 160-188 (213)
235 KOG3349|consensus 22.1 2.7E+02 0.0059 20.6 5.0 65 14-83 25-93 (170)
236 PHA02902 putative IMV membrane 22.1 55 0.0012 20.7 1.2 15 88-102 52-66 (70)
237 TIGR01141 hisC histidinol-phos 22.1 1.7E+02 0.0038 22.1 4.2 85 12-99 130-233 (346)
238 PRK12313 glycogen branching en 22.1 1.8E+02 0.0038 25.0 4.6 47 14-60 173-248 (633)
239 PRK11009 aphA acid phosphatase 22.0 1.2E+02 0.0025 23.1 3.2 27 9-35 189-215 (237)
240 COG2863 Cytochrome c553 [Energ 22.0 56 0.0012 22.8 1.4 16 87-102 82-97 (121)
241 PRK13015 3-dehydroquinate dehy 21.9 1.4E+02 0.0031 21.4 3.5 52 22-77 41-100 (146)
242 COG0800 Eda 2-keto-3-deoxy-6-p 21.3 2.3E+02 0.005 21.5 4.7 21 14-34 28-48 (211)
243 PRK10481 hypothetical protein; 21.2 2.6E+02 0.0056 21.2 4.9 64 15-81 144-217 (224)
244 COG5148 RPN10 26S proteasome r 21.2 45 0.00098 25.5 0.8 22 40-61 127-148 (243)
245 cd06591 GH31_xylosidase_XylS X 21.0 1.6E+02 0.0035 22.9 4.0 37 13-49 68-104 (319)
246 cd07487 Peptidases_S8_1 Peptid 20.9 1.8E+02 0.004 21.0 4.0 39 14-52 92-141 (264)
247 COG3618 Predicted metal-depend 20.8 2.7E+02 0.0059 22.0 5.1 42 40-81 128-172 (279)
248 PRK08192 aspartate carbamoyltr 20.7 4E+02 0.0086 21.3 6.2 61 13-74 59-126 (338)
249 PRK11142 ribokinase; Provision 20.7 2E+02 0.0043 21.4 4.2 40 14-53 43-83 (306)
250 cd05005 SIS_PHI Hexulose-6-pho 20.7 1.5E+02 0.0032 20.7 3.4 26 14-39 92-117 (179)
251 PRK13490 chemoreceptor glutami 20.6 1.4E+02 0.003 21.5 3.3 40 40-79 72-134 (162)
252 TIGR03234 OH-pyruv-isom hydrox 20.6 3.4E+02 0.0074 19.7 9.7 66 15-80 18-107 (254)
253 PRK13587 1-(5-phosphoribosyl)- 20.6 3.7E+02 0.008 20.0 7.5 37 40-76 152-198 (234)
254 TIGR00538 hemN oxygen-independ 20.6 4.7E+02 0.01 21.3 7.3 57 13-69 150-227 (455)
255 PRK07933 thymidylate kinase; V 20.4 1.6E+02 0.0034 21.5 3.6 46 1-46 2-52 (213)
256 COG0135 TrpF Phosphoribosylant 20.3 64 0.0014 24.3 1.5 18 85-102 33-50 (208)
257 PLN02450 1-aminocyclopropane-1 20.2 2.3E+02 0.0049 23.2 4.8 75 13-88 174-280 (468)
258 TIGR02147 Fsuc_second hypothet 20.2 34 0.00073 26.7 -0.0 27 76-102 41-67 (271)
259 PF12826 HHH_2: Helix-hairpin- 20.0 40 0.00086 20.2 0.3 15 18-32 1-15 (64)
No 1
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=100.00 E-value=1.2e-43 Score=277.85 Aligned_cols=101 Identities=50% Similarity=0.784 Sum_probs=89.9
Q ss_pred CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH------------------HHHHHHHhcCCeeeccCCCHHHH
Q psy11267 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY------------------LVVRECNRLGMLIDLSHTSVQTM 62 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~------------------~~i~~mn~lGmiiDlSH~s~~t~ 62 (103)
++++||+++|++|++.|+.||++|||++|||||+.|.|| ++|+|||++||+||+||+|++||
T Consensus 107 il~iEg~~~l~~~l~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~lGm~vDvSH~s~~t~ 186 (320)
T PF01244_consen 107 ILGIEGAHALGGDLERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRLGMLVDVSHLSEKTF 186 (320)
T ss_dssp EEEEESCGGGTTTHHHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHH
T ss_pred EEEeeccccccCCHHHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHcCCeeeeccCCHHHH
Confidence 589999999999999999999999999999999987766 99999999999999999999999
Q ss_pred HHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 63 RHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 63 ~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
+|+++.+++|||+||||||++|+|||||||||||+|+++
T Consensus 187 ~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~ 225 (320)
T PF01244_consen 187 WDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAER 225 (320)
T ss_dssp HHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHT
T ss_pred HHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHC
Confidence 999999999999999999999999999999999999975
No 2
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-43 Score=273.02 Aligned_cols=101 Identities=44% Similarity=0.612 Sum_probs=98.6
Q ss_pred CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH----------------HHHHHHHhcCCeeeccCCCHHHHHH
Q psy11267 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY----------------LVVRECNRLGMLIDLSHTSVQTMRH 64 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~----------------~~i~~mn~lGmiiDlSH~s~~t~~d 64 (103)
++++||+++|++|++.|+.||++|||++|||||++|.|| ++|++||++||+||+||+|++||||
T Consensus 98 ~l~~ega~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~D 177 (313)
T COG2355 98 VLHMEGAEPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDKTFWD 177 (313)
T ss_pred EEeccCcccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCccHHH
Confidence 479999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred HHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 65 VLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 65 ~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
+++.|++|||+||||++++|+|||||+|+|+|+|++.
T Consensus 178 vl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 178 VLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999874
No 3
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=100.00 E-value=3.5e-42 Score=268.72 Aligned_cols=101 Identities=52% Similarity=0.816 Sum_probs=98.5
Q ss_pred CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH----------------HHHHHHHhcCCeeeccCCCHHHHHH
Q psy11267 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY----------------LVVRECNRLGMLIDLSHTSVQTMRH 64 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~----------------~~i~~mn~lGmiiDlSH~s~~t~~d 64 (103)
+|++||+++|+++++.|+.||++|||+|+||||++|.|| ++|++||++||+||+||+|+++|+|
T Consensus 103 ~l~iEg~~~l~~~~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~lGmiiDvSH~s~~~~~d 182 (309)
T cd01301 103 IISIEGAHALGGDLALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRLGIIIDLSHLSERTFWD 182 (309)
T ss_pred EEEEeccccccCCHHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHcCCEEEcCCCCHHHHHH
Confidence 589999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred HHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 65 VLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 65 ~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
+++.+++|||+||||||++|+||||+||||+|+|+++
T Consensus 183 v~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~ 219 (309)
T cd01301 183 VLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAET 219 (309)
T ss_pred HHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999975
No 4
>KOG4127|consensus
Probab=100.00 E-value=1.9e-37 Score=246.47 Aligned_cols=100 Identities=66% Similarity=1.073 Sum_probs=97.9
Q ss_pred CcccccccccCCcHHHHHHHHHcCccEEeeccCCCCchH----------------------HHHHHHHhcCCeeeccCCC
Q psy11267 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY----------------------LVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~----------------------~~i~~mn~lGmiiDlSH~s 58 (103)
++|+||+|.|+++++.|+.||.+|+||++|||+|+|||+ ++|+||||+||+||+||.|
T Consensus 175 LiGVeGgH~i~sSlsVLR~fY~LG~RyltLTh~C~tpwA~a~~~~~~~~~~~~~gLs~FG~~vV~EMNRLGMmVDLShvS 254 (419)
T KOG4127|consen 175 LIGVEGGHSIDTSLSVLRSFYSLGVRYLTLTHTCDTPWADAAIVDYHDGENNIGGLSPFGQKVVFEMNRLGMMVDLSHVS 254 (419)
T ss_pred eecccccccccccHHHHHHHHHhhhhheeeeeccCCCchhhhhhcccCcCcccCCccHHHHHHHHHHhhhhheeehhhcC
Confidence 589999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhh
Q psy11267 59 VQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFP 100 (103)
Q Consensus 59 ~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~ 100 (103)
+.|+.||++.|++|||+|||.++++|+++||+||+.++.+++
T Consensus 255 ~atm~~aL~vS~APVIFSHSsA~~vcns~rNVPDdVL~llk~ 296 (419)
T KOG4127|consen 255 DATMRDALEVSRAPVIFSHSSAYSVCNSSRNVPDDVLQLLKE 296 (419)
T ss_pred HHHHHHHHHhhcCceEeecccHHHHhcCccCCcHHHHHHHhh
Confidence 999999999999999999999999999999999999999876
No 5
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.05 E-value=0.61 Score=36.10 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCccEEeeccCC----CCc-------hH-HHHHHHHhcCCeeeccCCCHH-----HHHHHHHhcCCC--EE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC----PTP-------WY-LVVRECNRLGMLIDLSHTSVQ-----TMRHVLNISSAP--VI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~----~n~-------~~-~~i~~mn~lGmiiDlSH~s~~-----t~~d~l~~s~~P--vi 74 (103)
...++.+.+.|..-+.|+|-| +++ ++ ..+++.-.+.+++|.||..-. ..--+.-...+- +|
T Consensus 139 ~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~I 218 (250)
T PRK13397 139 LGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMM 218 (250)
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEE
Confidence 456778888999989999833 222 11 444544457888999997654 333333344566 89
Q ss_pred EecCCc-cccCCCCCCCCHHHHHHhhhhc
Q psy11267 75 FSHSSA-FALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 75 ~SHs~~-ral~~~~RNl~De~i~~ia~~~ 102 (103)
=.|-++ +++++.+-.++-++++.+.+.+
T Consensus 219 E~H~~P~~A~sD~~q~l~~~~l~~l~~~~ 247 (250)
T PRK13397 219 EVHPDPDHALSDAAQQIDYKQLEQLGQEL 247 (250)
T ss_pred EecCCcccccCchhhhCCHHHHHHHHHHh
Confidence 999885 6799999999999999988765
No 6
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.83 E-value=0.3 Score=32.16 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=47.9
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCCC--HHHHHHHHHh
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTS--VQTMRHVLNI 68 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s--~~t~~d~l~~ 68 (103)
.|..++.+..+.++.+.+.|.+++-+|-|....-.++.+++.++|+-++-++.- -..+.+.+..
T Consensus 11 ~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp ETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred eCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 478899999999999999999999999988777779999999999998887653 3334444443
No 7
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=90.28 E-value=3 Score=29.56 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCC------chHHHHHHHHhcCCeeeccCCCHHH-----HHHHHHhcC--CCEEEecCCc
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT------PWYLVVRECNRLGMLIDLSHTSVQT-----MRHVLNISS--APVIFSHSSA 80 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n------~~~~~i~~mn~lGmiiDlSH~s~~t-----~~d~l~~s~--~Pvi~SHs~~ 80 (103)
.+.+..+++.|+..+.+...... .+.++++.+.+.|+.|.+ |+.+.. +.++++... .++++.|.+.
T Consensus 105 ~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 183 (275)
T cd01292 105 LELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVI-HAGELPDPTRALEDLVALLRLGGRVVIGHVSH 183 (275)
T ss_pred HHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEE-eeCCcccCccCHHHHHHHHhcCCCEEEECCcc
Confidence 34555556668888888765432 122888899999999865 444333 677777664 7899999985
Q ss_pred cccCCCCCCCCHHHHHHhhh
Q psy11267 81 FALCPSPRNVPDPVLKLVFP 100 (103)
Q Consensus 81 ral~~~~RNl~De~i~~ia~ 100 (103)
- +++.++.+++
T Consensus 184 ~---------~~~~~~~~~~ 194 (275)
T cd01292 184 L---------DPELLELLKE 194 (275)
T ss_pred C---------CHHHHHHHHH
Confidence 3 5666666654
No 8
>PRK13753 dihydropteroate synthase; Provisional
Probab=88.23 E-value=4.5 Score=31.80 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=36.2
Q ss_pred CchHHHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCC
Q psy11267 36 TPWYLVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 36 n~~~~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~ 79 (103)
+.-.+++++.-+.| |+-|+|-..+..+.+++..++.|+|..|+.
T Consensus 83 T~~~~va~~al~aGadiINDVsg~~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 83 SFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEEEecC
Confidence 33337777776664 688999999989999999999999999984
No 9
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=87.69 E-value=1.2 Score=35.16 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCeeeccCCCHHH------HHHHHHh-cCCCEEEecCCc-cccCCCCCCCCHHHHHHhhhhc
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQT------MRHVLNI-SSAPVIFSHSSA-FALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t------~~d~l~~-s~~Pvi~SHs~~-ral~~~~RNl~De~i~~ia~~~ 102 (103)
-+++++-.|-|++|.||.+-+- ..-++.. ++.-+|=-|-++ .++++.+-.++-++++.+.+.+
T Consensus 207 ~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~ 277 (286)
T COG2876 207 PILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKEL 277 (286)
T ss_pred HHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHH
Confidence 8899999999999999987543 2222222 356677777775 5799999999999999988765
No 10
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=87.52 E-value=2.3 Score=33.67 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHH-HhcCCeeeccCC------------CHHHHHHHHHh------cCCCEEEecCCc-cccCCCCCCCCHHHHHHhh
Q psy11267 40 LVVREC-NRLGMLIDLSHT------------SVQTMRHVLNI------SSAPVIFSHSSA-FALCPSPRNVPDPVLKLVF 99 (103)
Q Consensus 40 ~~i~~m-n~lGmiiDlSH~------------s~~t~~d~l~~------s~~Pvi~SHs~~-ral~~~~RNl~De~i~~ia 99 (103)
.+++++ -.+-+++|.||. +.+-+--.+.. .+.=+|=+|-++ .|+|+.|-.|+-+++..+.
T Consensus 183 p~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~ 262 (281)
T PRK12457 183 RQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFL 262 (281)
T ss_pred HHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHH
Confidence 444444 356899999995 55554444433 266788899885 5699999999999998876
Q ss_pred hhc
Q psy11267 100 PYL 102 (103)
Q Consensus 100 ~~~ 102 (103)
+.+
T Consensus 263 ~~l 265 (281)
T PRK12457 263 SQV 265 (281)
T ss_pred HHH
Confidence 654
No 11
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=85.58 E-value=6 Score=30.95 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=61.4
Q ss_pred HHHHHHHHcCccEEeeccCCCCchH-----------HHHHHHHhcCCeeeccCC------------CHHHHHHHHHhc--
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWY-----------LVVRECNRLGMLIDLSHT------------SVQTMRHVLNIS-- 69 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~-----------~~i~~mn~lGmiiDlSH~------------s~~t~~d~l~~s-- 69 (103)
...+.+...|-.-+-|+.-+. .|+ -+++++ .+-+++|.||. +.+.+--.+..+
T Consensus 134 ~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAv 211 (258)
T TIGR01362 134 NVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAV 211 (258)
T ss_pred HHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 455666677776666665432 222 667776 68899999994 666655555543
Q ss_pred ----CCCEEEecCCc-cccCCCCCCCCHHHHHHhhhhc
Q psy11267 70 ----SAPVIFSHSSA-FALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 70 ----~~Pvi~SHs~~-ral~~~~RNl~De~i~~ia~~~ 102 (103)
+.-+|=+|-++ .|+|+.|-.++-++++.+.+.+
T Consensus 212 A~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 212 AVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 67788899885 5699999999999998886654
No 12
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.35 E-value=5.3 Score=31.35 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH-----------HHHHHHHhcCCeeeccCC------------CHHHHHHHHHhc-
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY-----------LVVRECNRLGMLIDLSHT------------SVQTMRHVLNIS- 69 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~-----------~~i~~mn~lGmiiDlSH~------------s~~t~~d~l~~s- 69 (103)
+...+.+..-|-.-+-|+.-+. .|+ -+++++. +-+++|.||. +.+.+--.+..+
T Consensus 141 ~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~~~-lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AA 218 (264)
T PRK05198 141 KNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRETG-APVIFDATHSVQLPGGQGGSSGGQREFVPVLARAA 218 (264)
T ss_pred HHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhhCC-CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHH
Confidence 3455666666766666655332 223 6677766 8999999994 666555544442
Q ss_pred -----CCCEEEecCCc-cccCCCCCCCCHHHHHHhhhhc
Q psy11267 70 -----SAPVIFSHSSA-FALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 70 -----~~Pvi~SHs~~-ral~~~~RNl~De~i~~ia~~~ 102 (103)
+.=+|=+|-++ .|+|+.+-.|+-+++..+.+.+
T Consensus 219 vA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 257 (264)
T PRK05198 219 VAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQL 257 (264)
T ss_pred HHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 56788899885 6799999999999998876654
No 13
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=85.21 E-value=6.4 Score=29.54 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCccEEee--cc--CCCCch-HHHHHHHHhcCCeeeccCCCHHHHH---HHHHhcCCCEEEecCCcc
Q psy11267 13 SMAVLRMFYKLGVRYLTL--TH--ACPTPW-YLVVRECNRLGMLIDLSHTSVQTMR---HVLNISSAPVIFSHSSAF 81 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~l--t~--n~~n~~-~~~i~~mn~lGmiiDlSH~s~~t~~---d~l~~s~~Pvi~SHs~~r 81 (103)
.-+.|+.+.+.|+|-+-+ .+ ..+.++ .++++.+.++|+.+++ |+....+. +.++..+.+||+-|-+..
T Consensus 82 ~~~~l~~~~~~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~-~~~~~~l~~l~~l~~~~~l~ivldH~G~p 157 (263)
T cd01311 82 TDAELKEMHDAGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQV-YFDAVDLPALLPFLQKLPVAVVIDHFGRP 157 (263)
T ss_pred CHHHHHHHHHCCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEE-EeCHhhHHHHHHHHHHCCCCEEEECCCCC
Confidence 357788888888887754 22 112222 3799999999999999 66555433 344444788999998843
No 14
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=83.06 E-value=7.5 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=35.6
Q ss_pred cccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcC
Q psy11267 4 VEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLG 49 (103)
Q Consensus 4 ~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lG 49 (103)
+.|..+|.+-.+.|+.+.+.|++++-+|-|....-.++.+++..+|
T Consensus 20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~ 65 (269)
T COG0647 20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLG 65 (269)
T ss_pred EeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999999999987544444445555433
No 15
>PRK13618 psbV cytochrome c-550; Provisional
Probab=80.34 E-value=1.4 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.271 Sum_probs=17.9
Q ss_pred cCCCCCCCCHHHHHHhhhhc
Q psy11267 83 LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 83 l~~~~RNl~De~i~~ia~~~ 102 (103)
+.|..|+||||++++|+++|
T Consensus 126 ~mP~~~~Lsd~eL~ava~yl 145 (163)
T PRK13618 126 IFTAMRNLTDKDLEAIAGHI 145 (163)
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 56788999999999999986
No 16
>PRK13617 psbV cytochrome c-550; Provisional
Probab=78.86 E-value=1.9 Score=31.82 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=22.6
Q ss_pred EEEecCCccc--cCCCCCCCCHHHHHHhhhhc
Q psy11267 73 VIFSHSSAFA--LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 73 vi~SHs~~ra--l~~~~RNl~De~i~~ia~~~ 102 (103)
+.-.|-+++. +.+.-|++|||++++|+++|
T Consensus 121 ~~e~~P~~~~~~imP~~~~LsdeeL~alAayL 152 (170)
T PRK13617 121 IADLHPSMRSADLYPAMRDLNDEDLRLMAGYI 152 (170)
T ss_pred ccccCccccccccCcccCCCCHHHHHHHHHHH
Confidence 3445655544 66777999999999999986
No 17
>PRK10444 UMP phosphatase; Provisional
Probab=77.01 E-value=5.8 Score=30.00 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=42.6
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeecc
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlS 55 (103)
.|..++.+..+.++.+.+.|.+++-+|-+....-.++.++++++|+-++-.
T Consensus 14 ~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~ 64 (248)
T PRK10444 14 HDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDS 64 (248)
T ss_pred eCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHh
Confidence 355788888999999999999999999987666668999999999855544
No 18
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=74.16 E-value=27 Score=28.04 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCch-H-----------HHHHHHHhcCCeeeccCCCHH-----HHHHHHHhcCCC--EE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPW-Y-----------LVVRECNRLGMLIDLSHTSVQ-----TMRHVLNISSAP--VI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~-~-----------~~i~~mn~lGmiiDlSH~s~~-----t~~d~l~~s~~P--vi 74 (103)
+...+.+...|-..+.|.+-+...| . ..+++.-.+-+++|-||..-. ..--+.-...+- +|
T Consensus 217 l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliI 296 (335)
T PRK08673 217 LMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIV 296 (335)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEE
Confidence 3456666777887777777432122 1 555555457778899999775 443333344555 88
Q ss_pred EecCC-ccccCCCCCCCCHHHHHHhhhhc
Q psy11267 75 FSHSS-AFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 75 ~SHs~-~ral~~~~RNl~De~i~~ia~~~ 102 (103)
=.|-+ -+++++++=.++-++++.+.+.+
T Consensus 297 E~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 297 EVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred EecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 88866 46789999999999999887654
No 19
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=71.84 E-value=2.4 Score=30.16 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=14.9
Q ss_pred cCCCCCCCCHHHHHHhhhhc
Q psy11267 83 LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 83 l~~~~RNl~De~i~~ia~~~ 102 (103)
+++.=|||+||++++||.++
T Consensus 99 i~p~mr~ltdddL~~iAg~I 118 (135)
T PF14495_consen 99 IFPKMRNLTDDDLYAIAGYI 118 (135)
T ss_dssp TSGGGTS--HHHHHHHHHHH
T ss_pred hhHhhcCCCHHHHHHHHHHH
Confidence 46667999999999999864
No 20
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=71.77 E-value=29 Score=27.65 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=60.4
Q ss_pred HHHHHHHHcCccEEeeccCCCCchH-----------HHHHHHHhcCCeeeccCC-----------------CHHHHHHHH
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWY-----------LVVRECNRLGMLIDLSHT-----------------SVQTMRHVL 66 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~-----------~~i~~mn~lGmiiDlSH~-----------------s~~t~~d~l 66 (103)
...+.+...|-.-+-|+.-+. .|+ -++++ ..+-+++|.||. +.+-+--.+
T Consensus 148 ~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~l 225 (290)
T PLN03033 148 NSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCI 225 (290)
T ss_pred HHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHH
Confidence 355666777777776666432 233 44444 357899999994 666666555
Q ss_pred Hhc------CCCEEEecCCc-cccCCCCCCCCHHHHHHhhhhc
Q psy11267 67 NIS------SAPVIFSHSSA-FALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 67 ~~s------~~Pvi~SHs~~-ral~~~~RNl~De~i~~ia~~~ 102 (103)
..+ +.=+|=+|-++ .|+|+.|-.++-++++.+.+.+
T Consensus 226 arAAvA~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~l 268 (290)
T PLN03033 226 ARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEEL 268 (290)
T ss_pred HHHHHHhCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHHH
Confidence 553 56688899885 5799999999999998876654
No 21
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=70.12 E-value=34 Score=26.24 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCccEEeeccCCCCch-H--------HHHHHHH---hcCCeeeccCCCH-----HHHHHHHHhcCCC--EE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPW-Y--------LVVRECN---RLGMLIDLSHTSV-----QTMRHVLNISSAP--VI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~-~--------~~i~~mn---~lGmiiDlSH~s~-----~t~~d~l~~s~~P--vi 74 (103)
...++.+.+.|-.-+.|+|-+...| + ..+..|. .+-+++|-+|..- ...-.+.-...+- +|
T Consensus 149 ~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~i 228 (260)
T TIGR01361 149 LYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMI 228 (260)
T ss_pred HHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEE
Confidence 4567778888988888888543333 2 4444443 4788899999765 3332222233555 78
Q ss_pred EecCC-ccccCCCCCCCCHHHHHHhhhhc
Q psy11267 75 FSHSS-AFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 75 ~SHs~-~ral~~~~RNl~De~i~~ia~~~ 102 (103)
=+|-. -+++++|+=.++-++++.+.+.+
T Consensus 229 E~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 229 EVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred EeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 88865 46678999999999999887654
No 22
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=70.01 E-value=4.3 Score=29.65 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=20.4
Q ss_pred ecCCccc--cCCCCCCCCHHHHHHhhhhc
Q psy11267 76 SHSSAFA--LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 76 SHs~~ra--l~~~~RNl~De~i~~ia~~~ 102 (103)
-|.+.+. +.|.-|+||||+|++|++++
T Consensus 117 ~~~~~K~~~~MPa~~~LsdeEL~aVAaYI 145 (163)
T CHL00133 117 IHPSIKSADIFPKMRSLTDEDLYAIAGHI 145 (163)
T ss_pred hhcccCccccCCCCCCCCHHHHHHHHHHH
Confidence 3444443 36777999999999999985
No 23
>PLN02645 phosphoglycolate phosphatase
Probab=69.85 E-value=12 Score=29.06 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=40.9
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeecc
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlS 55 (103)
.|.+++.+-.+.|+.+++.|.+++-+|-|....-.++++++.++|+-++-.
T Consensus 41 ~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~ 91 (311)
T PLN02645 41 KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEE 91 (311)
T ss_pred eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChh
Confidence 456788888999999999999999999887665667778888888755543
No 24
>PRK09875 putative hydrolase; Provisional
Probab=69.10 E-value=54 Score=25.70 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=61.3
Q ss_pred cHHHHHHHHHcCc--cEEeeccCCCCchHHHHHHHHhcCCeeeccC------CCHHHHHHHHHhc-----CCCEEEecCC
Q psy11267 13 SMAVLRMFYKLGV--RYLTLTHACPTPWYLVVRECNRLGMLIDLSH------TSVQTMRHVLNIS-----SAPVIFSHSS 79 (103)
Q Consensus 13 ~l~~l~~~y~lGv--R~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH------~s~~t~~d~l~~s-----~~Pvi~SHs~ 79 (103)
-++.++.+.+.|| +.+-++|...+.--+.++++-+.|..+-..+ .++....+++..- .--++.||-.
T Consensus 165 g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~ 244 (292)
T PRK09875 165 GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDI 244 (292)
T ss_pred hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 4678999999999 9999999876644488999999999999876 3333444444433 2347889887
Q ss_pred ccccCC-------------------CCCCCCHHHHHHhh
Q psy11267 80 AFALCP-------------------SPRNVPDPVLKLVF 99 (103)
Q Consensus 80 ~ral~~-------------------~~RNl~De~i~~ia 99 (103)
.+.-.. -.|.+++++|+.+-
T Consensus 245 ~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~ 283 (292)
T PRK09875 245 TRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVML 283 (292)
T ss_pred CCcccccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 665221 13567888887764
No 25
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.30 E-value=3.2 Score=26.84 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=19.5
Q ss_pred ccCCCHHHHHHHHHhcCCCEEEec-CCccc
Q psy11267 54 LSHTSVQTMRHVLNISSAPVIFSH-SSAFA 82 (103)
Q Consensus 54 lSH~s~~t~~d~l~~s~~Pvi~SH-s~~ra 82 (103)
+||-.-..+.+.++....|++.+| ++.-+
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 456666666666666788999999 44433
No 26
>PRK13620 psbV cytochrome c-550; Provisional
Probab=68.03 E-value=4.7 Score=30.74 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred cCCccc--cCCCCCCCCHHHHHHhhhhc
Q psy11267 77 HSSAFA--LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 77 Hs~~ra--l~~~~RNl~De~i~~ia~~~ 102 (103)
|-+.++ +.+.-||||||++++|+.+.
T Consensus 170 HPs~~s~d~mP~~r~LtdedL~aIa~~I 197 (215)
T PRK13620 170 HPSTKSTDIFPKMRNLTEDDLVAISGHI 197 (215)
T ss_pred CccccccccccccCCCCHHHHHHHHHHH
Confidence 444444 45777999999999999874
No 27
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=67.87 E-value=4.2 Score=29.49 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=17.2
Q ss_pred cCCCCCCCCHHHHHHhhhhc
Q psy11267 83 LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 83 l~~~~RNl~De~i~~ia~~~ 102 (103)
+.|.-|+||||++++|++++
T Consensus 125 ~mP~~~~LsdeEL~avAaYI 144 (159)
T TIGR03045 125 IFPKMRNLTDEDLRLIAGHI 144 (159)
T ss_pred ccCCcCCCCHHHHHHHHHHH
Confidence 45667899999999999986
No 28
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=66.63 E-value=18 Score=27.11 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=37.8
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeee
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLID 53 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiD 53 (103)
.|.+++.+..+.|+.+.+.|++++-+|-|..-+..++.+.+.++|+-+.
T Consensus 14 ~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~ 62 (249)
T TIGR01457 14 KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT 62 (249)
T ss_pred cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 4566777789999999999999999998775556666777777775443
No 29
>PRK09061 D-glutamate deacylase; Validated
Probab=66.26 E-value=48 Score=27.65 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHHHH----cCccEEe--eccCCCCc---hHHHHHHHHhcCCeeeccCCCHH----------HHHHHHHh---cCC
Q psy11267 14 MAVLRMFYK----LGVRYLT--LTHACPTP---WYLVVRECNRLGMLIDLSHTSVQ----------TMRHVLNI---SSA 71 (103)
Q Consensus 14 l~~l~~~y~----lGvR~i~--lt~n~~n~---~~~~i~~mn~lGmiiDlSH~s~~----------t~~d~l~~---s~~ 71 (103)
++.+..+.+ .|+-.++ +.|..... +-++.+...+.|..+++ |+.+. ++.++++. ++.
T Consensus 168 l~~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~-H~e~~~~~~~~~e~~av~~~i~lA~~~G~ 246 (509)
T PRK09061 168 LAEILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYT-HVRYLSNVDPRSSVDAYQELIAAAAETGA 246 (509)
T ss_pred HHHHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEE-EecCcccCCchhHHHHHHHHHHHHHHhCC
Confidence 555666654 7988887 56643222 22888888999999988 77753 33555554 468
Q ss_pred CEEEecCCcccc
Q psy11267 72 PVIFSHSSAFAL 83 (103)
Q Consensus 72 Pvi~SHs~~ral 83 (103)
|+.++|-+..+-
T Consensus 247 rv~IsHlss~g~ 258 (509)
T PRK09061 247 HMHICHVNSTSL 258 (509)
T ss_pred CEEEEeeccCCc
Confidence 999999988664
No 30
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=65.49 E-value=36 Score=26.01 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHhc--CCeeeccCCCHHHHHHH-----------HHh---cCCCEEEecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 40 LVVRECNRL--GMLIDLSHTSVQTMRHV-----------LNI---SSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 40 ~~i~~mn~l--GmiiDlSH~s~~t~~d~-----------l~~---s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
+.++++.+. .|.+|+-+.++.-.++. ++. ...||.+++--.... |-++|++++|++.+
T Consensus 126 ~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~~ve~r~lviPg~-----~d~~e~i~~i~~~i 199 (260)
T COG1180 126 EALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGVHVEIRTLVIPGY-----NDDEEEIRELAEFI 199 (260)
T ss_pred HHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCCeEEEEEEEECCC-----CCCHHHHHHHHHHH
Confidence 455666554 68899999999843333 333 246777776655443 78899999998764
No 31
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.45 E-value=18 Score=27.36 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=39.9
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeecc
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlS 55 (103)
.|..++.+-.+.|+.+.+.|+++.-+|-|....-.++++++.++|+-++-.
T Consensus 15 ~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~ 65 (279)
T TIGR01452 15 LGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAE 65 (279)
T ss_pred cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh
Confidence 356677777889999999999999999887666667777777777765543
No 32
>PRK13622 psbV cytochrome c-550; Provisional
Probab=64.74 E-value=7 Score=29.03 Aligned_cols=26 Identities=38% Similarity=0.591 Sum_probs=19.8
Q ss_pred cCCccccCCCC--CCCCHHHHHHhhhhc
Q psy11267 77 HSSAFALCPSP--RNVPDPVLKLVFPYL 102 (103)
Q Consensus 77 Hs~~ral~~~~--RNl~De~i~~ia~~~ 102 (103)
|-++++.-.-| |+||||+|+.+|+++
T Consensus 128 ~p~~~~~~~~p~~~~LsdeEI~~VA~yI 155 (180)
T PRK13622 128 HPNTQLLSEYPRLRNLTDEDLKLIAGYI 155 (180)
T ss_pred cccchhccccccccCCCHHHHHHHHHHH
Confidence 66666654444 899999999999874
No 33
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=64.36 E-value=21 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCe
Q psy11267 9 SLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGML 51 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmi 51 (103)
++.+..+.++.+.+.|.+++-+|-|......++.+.++++|+-
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 7888899999999999999999988766666777888888754
No 34
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=63.76 E-value=56 Score=24.01 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=52.6
Q ss_pred cccccccCC-c-H-HHHHHHHHcCccEEeeccCCCCc-hHHHHHHHH-hc-CCeeeccCCCHHHHH-----------HHH
Q psy11267 4 VEGGHSLGN-S-M-AVLRMFYKLGVRYLTLTHACPTP-WYLVVRECN-RL-GMLIDLSHTSVQTMR-----------HVL 66 (103)
Q Consensus 4 ~Eg~~~l~~-~-l-~~l~~~y~lGvR~i~lt~n~~n~-~~~~i~~mn-~l-GmiiDlSH~s~~t~~-----------d~l 66 (103)
+=||+|+-. + + +.++.+.+.|++ +.++-|+.-+ +.+.++++- .. .+.||+...+++... +.+
T Consensus 76 ~sGGEPll~~~~~~~l~~~~k~~g~~-i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i 154 (246)
T PRK11145 76 ASGGEAILQAEFVRDWFRACKKEGIH-TCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFA 154 (246)
T ss_pred EeCccHhcCHHHHHHHHHHHHHcCCC-EEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCCChHHHHHHH
Confidence 457777752 2 2 456777888996 5666666432 235555553 23 367899888775432 211
Q ss_pred ---HhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 67 ---NISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 67 ---~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
.....++.+...-...+ |-++|+++++++.+
T Consensus 155 ~~l~~~g~~v~i~~~li~g~-----nd~~~ei~~l~~~l 188 (246)
T PRK11145 155 RYLAKRNQKTWIRYVVVPGW-----TDDDDSAHRLGEFI 188 (246)
T ss_pred HHHHhCCCcEEEEEEEECCC-----CCCHHHHHHHHHHH
Confidence 22345555554433222 33556888887654
No 35
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=63.67 E-value=5 Score=26.92 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.|||||++++++.|
T Consensus 33 ~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAEL 48 (96)
T ss_dssp TTTS-HHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 4779999999999876
No 36
>PRK13621 psbV cytochrome c-550; Provisional
Probab=62.99 E-value=5.8 Score=29.24 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHhhhhc
Q psy11267 85 PSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 85 ~~~RNl~De~i~~ia~~~ 102 (103)
+..++||||++++||++|
T Consensus 134 ps~~~LSdeEL~aIAaYL 151 (170)
T PRK13621 134 VPEDWMTDEELQNLAAFI 151 (170)
T ss_pred CccCCCCHHHHHHHHHHH
Confidence 345899999999999986
No 37
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.92 E-value=45 Score=25.79 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCccEEeeccCCC---CchH------HHHHHH---HhcCCeeeccCCCH-----HHHHHHHHhcCCC--EE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACP---TPWY------LVVREC---NRLGMLIDLSHTSV-----QTMRHVLNISSAP--VI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~---n~~~------~~i~~m---n~lGmiiDlSH~s~-----~t~~d~l~~s~~P--vi 74 (103)
+..++.+...|-..+.|.+-+. +.+. ..+..| -.+-+++|.||..- ...--+.-...+- +|
T Consensus 151 ~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~i 230 (266)
T PRK13398 151 LYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMI 230 (266)
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEE
Confidence 3456677778888777777311 1111 444444 34689999999754 2222222223444 88
Q ss_pred Eec-CCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 75 FSH-SSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 75 ~SH-s~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
=+| +--+++++|+=.++-++++.+.+.+
T Consensus 231 E~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 231 EVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred eccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 888 4467789999999999999887654
No 38
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=62.83 E-value=18 Score=29.63 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=40.1
Q ss_pred cccccCCcHHHHHHHHHcCccEEeeccCCCCchH--------HHHHHHHhcCC--eeeccCC
Q psy11267 6 GGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY--------LVVRECNRLGM--LIDLSHT 57 (103)
Q Consensus 6 g~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~--------~~i~~mn~lGm--iiDlSH~ 57 (103)
+..+.+.+...++..++.|...+--.-.-.+.++ +++++.|++|| +||++=.
T Consensus 11 ~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 11 NRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred CCCcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 4566777899999999999877655554445554 99999999997 7898754
No 39
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=60.14 E-value=57 Score=26.37 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=60.0
Q ss_pred cCCcHHHHHHHHHcCccEEeeccCCCCc---hH------HHHHHHH---hcCCeeeccCCC-HHHHH----HHHHhcC--
Q psy11267 10 LGNSMAVLRMFYKLGVRYLTLTHACPTP---WY------LVVRECN---RLGMLIDLSHTS-VQTMR----HVLNISS-- 70 (103)
Q Consensus 10 l~~~l~~l~~~y~lGvR~i~lt~n~~n~---~~------~~i~~mn---~lGmiiDlSH~s-~~t~~----d~l~~s~-- 70 (103)
+++=...++.+...|-.-+.|+|-|... ++ ..|..|. .+-+++|-||.. .+.+. -+.-...
T Consensus 238 ~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAd 317 (360)
T PRK12595 238 IEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGAD 317 (360)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCC
Confidence 3333456778888899889999844321 11 4444444 467999999976 33332 1111223
Q ss_pred CCEEEecCC-ccccCCCCCCCCHHHHHHhhhhc
Q psy11267 71 APVIFSHSS-AFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 71 ~Pvi~SHs~-~ral~~~~RNl~De~i~~ia~~~ 102 (103)
.-+|=.|-+ ..+.++|+=.++-++++.+.+.+
T Consensus 318 g~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 318 GVMAEVHPDPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred eEEEEecCCCCCCCCchhhhCCHHHHHHHHHHH
Confidence 368888864 45678999999999998887643
No 40
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=59.96 E-value=57 Score=24.76 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred ccccCCcHHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCee------------eccCCCHHHHHHHHHhcCCC-
Q psy11267 7 GHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLI------------DLSHTSVQTMRHVLNISSAP- 72 (103)
Q Consensus 7 ~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmii------------DlSH~s~~t~~d~l~~s~~P- 72 (103)
..........++.|..+|+|.+++.-=+..... ++.+-+++.|+=| ++++.++.+..+++.....|
T Consensus 102 ~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~ 181 (239)
T TIGR02990 102 TPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPD 181 (239)
T ss_pred CCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCC
Confidence 344455567889999999999999864322222 5555667766654 66777888888877654222
Q ss_pred ---EEEecCCccc
Q psy11267 73 ---VIFSHSSAFA 82 (103)
Q Consensus 73 ---vi~SHs~~ra 82 (103)
|+.|=+|.|+
T Consensus 182 aDAifisCTnLrt 194 (239)
T TIGR02990 182 ADALFLSCTALRA 194 (239)
T ss_pred CCEEEEeCCCchh
Confidence 5555555554
No 41
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=58.20 E-value=7.8 Score=28.11 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHhhhhc
Q psy11267 85 PSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 85 ~~~RNl~De~i~~ia~~~ 102 (103)
+..++|+||++++||+++
T Consensus 123 p~~~~LsdeEL~aIAaYL 140 (155)
T TIGR03046 123 VPEDWMDDEEVENLAAFI 140 (155)
T ss_pred CcccCCCHHHHHHHHHHH
Confidence 445889999999999986
No 42
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=56.75 E-value=47 Score=26.77 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHc--CccEEeeccCCCCchHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCC-CEEEecC
Q psy11267 12 NSMAVLRMFYKL--GVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSA-PVIFSHS 78 (103)
Q Consensus 12 ~~l~~l~~~y~l--GvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~-Pvi~SHs 78 (103)
-+.+.++.|.+. +++.|+++=... -.++|+.+.+.|+++-+-|.. .++.++.+.... --.+||-
T Consensus 151 p~~~~~~~~~~~~~~i~~iTlAPE~~--~~~~i~~l~~~gi~vs~GHs~-A~~~~~~~a~~~Ga~~~THl 217 (382)
T PRK11170 151 PDAEMVDFLCENADVITKVTLAPEMV--DAEVIRKLVEAGIVVSAGHSN-ATYEEAKAGFRAGITFATHL 217 (382)
T ss_pred cCHHHHHHHHhccCCEEEEEECCCCC--cHHHHHHHHHCCcEEEeeCCc-CCHHHHHHHHHcCCCEEeec
Confidence 356677777655 588888887633 239999999999999999984 455555544322 2245664
No 43
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=55.33 E-value=49 Score=23.05 Aligned_cols=59 Identities=22% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHcCccEEeeccCCC-----CchHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEE
Q psy11267 16 VLRMFYKLGVRYLTLTHACP-----TPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVI 74 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt~n~~-----n~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi 74 (103)
.=-..+++|-..+.+..... ....+.++-+.+..=+|=+=|..+....+..+.++.|||
T Consensus 57 Fe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 57 FEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHSSVPVI 120 (142)
T ss_dssp HHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHCSSEEE
T ss_pred HHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhccCCeE
Confidence 33457899999999994331 123344444444433444559999999999999999998
No 44
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=53.99 E-value=9.2 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=15.5
Q ss_pred cCCCCCCCCHHHHHHhhhhc
Q psy11267 83 LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 83 l~~~~RNl~De~i~~ia~~~ 102 (103)
+-+....|||+++++|++++
T Consensus 48 Mp~~~~~ls~~e~~~l~~yi 67 (67)
T PF13442_consen 48 MPPFGGQLSDEEIEALAAYI 67 (67)
T ss_dssp BSCTTTTSTHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHC
Confidence 33444489999999999875
No 45
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=53.61 E-value=42 Score=25.21 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHcC-ccEEeeccCCCCchHHHHHHHHh-cCC-eeec--cCC----CHHHHHHHHHhcCCCEEEecCCcc
Q psy11267 11 GNSMAVLRMFYKLG-VRYLTLTHACPTPWYLVVRECNR-LGM-LIDL--SHT----SVQTMRHVLNISSAPVIFSHSSAF 81 (103)
Q Consensus 11 ~~~l~~l~~~y~lG-vR~i~lt~n~~n~~~~~i~~mn~-lGm-iiDl--SH~----s~~t~~d~l~~s~~Pvi~SHs~~r 81 (103)
++-++.|+.+++.| +|++|++-... +.++++.+ .+. -+++ .+. ....+.+.+...+.+|++--.-..
T Consensus 108 ~~~~~~l~~l~~~Gkir~iGvSn~~~----~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~ 183 (267)
T PRK11172 108 EEFMQALLEAKKQGLTREIGISNFTI----ALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY 183 (267)
T ss_pred HHHHHHHHHHHHCCCCCEEEEccCCH----HHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC
Confidence 34467889999999 99999985321 23333333 221 1221 111 124566666666777776443333
Q ss_pred ccCCCCCCCCHHHHHHhhhh
Q psy11267 82 ALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 82 al~~~~RNl~De~i~~ia~~ 101 (103)
+. -+.++.++.++++
T Consensus 184 G~-----~~~~~~l~~~a~~ 198 (267)
T PRK11172 184 GK-----VLKDPVIARIAAK 198 (267)
T ss_pred Cc-----ccCCHHHHHHHHH
Confidence 21 2345667777765
No 46
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=53.53 E-value=15 Score=29.97 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHc--CccEEeeccCC--------CCchH------------------HHHHHHHhcC----CeeeccCCCH
Q psy11267 16 VLRMFYKL--GVRYLTLTHAC--------PTPWY------------------LVVRECNRLG----MLIDLSHTSV 59 (103)
Q Consensus 16 ~l~~~y~l--GvR~i~lt~n~--------~n~~~------------------~~i~~mn~lG----miiDlSH~s~ 59 (103)
.++..+.. .=+++++++++ -|+.+ ++.++|.+.| ++||+||.+-
T Consensus 196 AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~~~l~~~vmVDcSH~NS 271 (356)
T PRK12822 196 AIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHDEGLNHRLIIDCSHGNS 271 (356)
T ss_pred HHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHHCCCCCcEEEECCCccC
Confidence 45555544 36677777763 24444 7777787765 8999999873
No 47
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=53.30 E-value=33 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=37.1
Q ss_pred cccCCcHHHHHHHHHcCccEEeeccCCCCchH-----HHHHHHHhcCCee
Q psy11267 8 HSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY-----LVVRECNRLGMLI 52 (103)
Q Consensus 8 ~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~-----~~i~~mn~lGmii 52 (103)
..+..+.+.++.+..+|+..++++-|..-.+| +-++.+++.||..
T Consensus 59 ~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 59 PHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY 108 (250)
T ss_pred ceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence 34566789999999999999999988777777 7888888888544
No 48
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=53.00 E-value=42 Score=27.06 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHc---CccEEeeccCCCCchHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCC-EEEecC
Q psy11267 12 NSMAVLRMFYKL---GVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAP-VIFSHS 78 (103)
Q Consensus 12 ~~l~~l~~~y~l---GvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~P-vi~SHs 78 (103)
-+++.++.|++. .+|.|+++=...+ -.++|+++.+.||+|-+-|.. .++.|+.+..+.- --+||-
T Consensus 151 p~~~~~~~~~~~~~~~i~~vTlAPE~~~-~~~~i~~l~~~gi~vs~GHs~-A~~~~~~~a~~~Ga~~~THl 219 (380)
T TIGR00221 151 PDVELFKKFLCEAGGVITKVTLAPEEDQ-HFELIRHLKDAGIIVSAGHTN-ATYELAKAAFKAGATHATHL 219 (380)
T ss_pred cCHHHHHHHHHhcCCCEEEEEECCCCCC-hHHHHHHHHHCCeEEEeeCCC-CCHHHHHHHHHcCCCeeeee
Confidence 467788888764 3999988875432 238999999999999999987 4667766654322 135554
No 49
>PRK13619 psbV cytochrome c-550; Provisional
Probab=52.38 E-value=18 Score=26.50 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.6
Q ss_pred ccCCCCCCCCHHHHHHhhhhc
Q psy11267 82 ALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 82 al~~~~RNl~De~i~~ia~~~ 102 (103)
.+.+-=|+||||++++||.+.
T Consensus 124 di~P~mr~LtdedL~~iAg~I 144 (160)
T PRK13619 124 DIFPELRNFTEDDLYDVAGYM 144 (160)
T ss_pred ccccccCCCCHHHHHHHHHHH
Confidence 466777999999999999863
No 50
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=51.92 E-value=27 Score=25.45 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCccEEeecc--CC---------------CCchH------HHHHHHHhcCC--eeec--cCCCHHHHH--H
Q psy11267 14 MAVLRMFYKLGVRYLTLTH--AC---------------PTPWY------LVVRECNRLGM--LIDL--SHTSVQTMR--H 64 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~--n~---------------~n~~~------~~i~~mn~lGm--iiDl--SH~s~~t~~--d 64 (103)
.++|+.+.++||..|-|.= .. +..|| ++|+++.++|| ++|+ .|+|...-+ +
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~ 86 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQD 86 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHH
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccccccccc
Confidence 4678999999999887652 11 12333 99999999887 5564 588887654 5
Q ss_pred HHHhcC
Q psy11267 65 VLNISS 70 (103)
Q Consensus 65 ~l~~s~ 70 (103)
..+...
T Consensus 87 ~~~~~~ 92 (316)
T PF00128_consen 87 SLNYFD 92 (316)
T ss_dssp HHTHTT
T ss_pred cccccc
Confidence 666443
No 51
>KOG3040|consensus
Probab=51.65 E-value=37 Score=26.48 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=59.3
Q ss_pred cccccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccC--CCHHHHHHHHHhcC-CCEEEecC
Q psy11267 2 IGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSH--TSVQTMRHVLNISS-APVIFSHS 78 (103)
Q Consensus 2 l~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH--~s~~t~~d~l~~s~-~Pvi~SHs 78 (103)
|.+|+. ++.++.+.|..+++.++..=.+|-...+.-..+.+++.++|+=|+=+- .|-.+..+.++.-+ +|..+-|-
T Consensus 18 Lh~e~~-avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d 96 (262)
T KOG3040|consen 18 LHIEDA-AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDD 96 (262)
T ss_pred Eecccc-cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcc
Confidence 455666 778899999999999987777776555666699999999998665442 45556677777654 78777776
Q ss_pred Ccccc
Q psy11267 79 SAFAL 83 (103)
Q Consensus 79 ~~ral 83 (103)
.++.-
T Consensus 97 ~a~~d 101 (262)
T KOG3040|consen 97 DALED 101 (262)
T ss_pred cchhh
Confidence 65553
No 52
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.25 E-value=1.1e+02 Score=24.88 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCccEEeeccCCC---------Cc--hH--HHHHHHHhcCCeeeccCCCH-HHHHHHHH----hcCCC--E
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACP---------TP--WY--LVVRECNRLGMLIDLSHTSV-QTMRHVLN----ISSAP--V 73 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~---------n~--~~--~~i~~mn~lGmiiDlSH~s~-~t~~d~l~----~s~~P--v 73 (103)
+..++.+.+.|-.-+.|++-+- |. +. ..+++.-.+-+++|.||..= +-.-..+. ...+- +
T Consensus 225 ~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGli 304 (352)
T PRK13396 225 LMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLM 304 (352)
T ss_pred HHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEE
Confidence 3456666666776666665311 11 11 55566656899999999641 11111111 12445 8
Q ss_pred EEecCC-ccccCCCCCCCCHHHHHHhhhhc
Q psy11267 74 IFSHSS-AFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 74 i~SHs~-~ral~~~~RNl~De~i~~ia~~~ 102 (103)
|=.|-+ .+++++++-.++-++++.+.+.+
T Consensus 305 IE~H~~pd~AlsD~~qsl~p~~~~~l~~~i 334 (352)
T PRK13396 305 IEVHPNPAKALSDGPQSLTPDRFDRLMQEL 334 (352)
T ss_pred EEecCCcccCCChhhhcCCHHHHHHHHHHH
Confidence 888976 46789999999999999887654
No 53
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=50.94 E-value=94 Score=22.94 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT 36 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n 36 (103)
+..++.+++-|+|.+.+|++..+
T Consensus 25 ~~~~~a~~~gGi~~iEvt~~~~~ 47 (206)
T PRK09140 25 LAHVGALIEAGFRAIEIPLNSPD 47 (206)
T ss_pred HHHHHHHHHCCCCEEEEeCCCcc
Confidence 45778889999999999997654
No 54
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=50.61 E-value=18 Score=29.95 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=45.0
Q ss_pred HhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 46 NRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 46 n~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
-..++.++...++.....+.+...+.|||.- -.--.++=.+|.+.++++..|++.|
T Consensus 398 ~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r-~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 398 PSYAVTLTPDGLSAEKLEARLRELPPPIIGR-IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred CeEEEEEecCCCCHHHHHHHHhcCCCCEEEE-EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 3455666777788999999999999998873 4445567789999999999999876
No 55
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.09 E-value=19 Score=27.99 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=28.0
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccC-----CCCchH
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHA-----CPTPWY 39 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n-----~~n~~~ 39 (103)
.|...++.++..++.-++.|||.|--|-. +.|+..
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~ 53 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIE 53 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHH
Confidence 37778899999999999999999877753 246655
No 56
>KOG2882|consensus
Probab=49.77 E-value=45 Score=26.80 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=40.3
Q ss_pred cccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCe
Q psy11267 4 VEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGML 51 (103)
Q Consensus 4 ~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmi 51 (103)
+.|..+|.++.+.++.+.++|=+.+-+|-|+.-.+.+..++.+++|.-
T Consensus 34 W~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 34 WLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred eecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 458899999999999999999666666766666777888889998887
No 57
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.54 E-value=27 Score=22.70 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYL 40 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~ 40 (103)
++.++...+.|++.+.+|-+.++++++
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 568888899999999999998888873
No 58
>PF06567 Neural_ProG_Cyt: Neural chondroitin sulphate proteoglycan cytoplasmic domain; InterPro: IPR009505 This entry represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis []. This domain contains a number of potential sites of phosphorylation by protein kinase C [].
Probab=48.44 E-value=11 Score=26.05 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=17.3
Q ss_pred EecCCccccCCCCCCCCHHHHHHhh
Q psy11267 75 FSHSSAFALCPSPRNVPDPVLKLVF 99 (103)
Q Consensus 75 ~SHs~~ral~~~~RNl~De~i~~ia 99 (103)
-||-|+|.||+.|+-. -...+++|
T Consensus 36 GShpNvrklcdtp~~~-~ph~~~la 59 (120)
T PF06567_consen 36 GSHPNVRKLCDTPPTN-SPHARALA 59 (120)
T ss_pred CCCcchhhhccCCCcc-cHHHHHHh
Confidence 3899999999999832 25555554
No 59
>PRK05451 dihydroorotase; Provisional
Probab=48.05 E-value=1.1e+02 Score=24.14 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHcC-ccEEee--cc---CCC----C--chHHHHHHHHhcCCeeeccCCCHHH----------------HH
Q psy11267 12 NSMAVLRMFYKLG-VRYLTL--TH---ACP----T--PWYLVVRECNRLGMLIDLSHTSVQT----------------MR 63 (103)
Q Consensus 12 ~~l~~l~~~y~lG-vR~i~l--t~---n~~----n--~~~~~i~~mn~lGmiiDlSH~s~~t----------------~~ 63 (103)
.+++.++.+.+.| ++.+-+ ++ ... + .+-++++.+.++|+.| +-|+.+.. +.
T Consensus 82 ~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V-~vHaE~~~~~~~~~~~e~~~~~~~l~ 160 (345)
T PRK05451 82 TDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPL-LVHGEVTDPDIDIFDREAVFIDRVLE 160 (345)
T ss_pred CCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEE-EEecCCCCcccccccchHHHHHHHHH
Confidence 3578888888889 556653 21 111 1 2338889999999988 66776411 12
Q ss_pred HHHHhc-CCCEEEecCCc
Q psy11267 64 HVLNIS-SAPVIFSHSSA 80 (103)
Q Consensus 64 d~l~~s-~~Pvi~SHs~~ 80 (103)
++.+.. +.|+++.|-++
T Consensus 161 ~lA~~~pg~~lhI~Hlst 178 (345)
T PRK05451 161 PLRRRFPKLKIVFEHITT 178 (345)
T ss_pred HHHHhcCCCcEEEEecCc
Confidence 233233 78999999875
No 60
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=47.90 E-value=47 Score=25.84 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=49.2
Q ss_pred HHHHHHH---hcCCeeeccCCC---HHHHHHHHHhcCC-CEEEecCCcccc--------------------------CCC
Q psy11267 40 LVVRECN---RLGMLIDLSHTS---VQTMRHVLNISSA-PVIFSHSSAFAL--------------------------CPS 86 (103)
Q Consensus 40 ~~i~~mn---~lGmiiDlSH~s---~~t~~d~l~~s~~-Pvi~SHs~~ral--------------------------~~~ 86 (103)
++|++|+ +.-|++=+|--. |-+..|+.+.++. -+++|=|..... ...
T Consensus 123 evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~ 202 (254)
T cd00762 123 EVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCR 202 (254)
T ss_pred HHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhc
Confidence 9999999 899999999655 6789999999854 577877755554 124
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.+||+++.+-|+.|
T Consensus 203 a~~itd~m~~aAA~aL 218 (254)
T cd00762 203 IRHITDDVFLSAAEAI 218 (254)
T ss_pred CeECCHHHHHHHHHHH
Confidence 6889999988777654
No 61
>PTZ00292 ribokinase; Provisional
Probab=47.88 E-value=33 Score=26.05 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=33.3
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeeeccCC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLIDLSHT 57 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiDlSH~ 57 (103)
.......+.++|++..-++.-++.++| .+.++|.+.|+ |++|+
T Consensus 55 ~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~GI--~~~~~ 98 (326)
T PTZ00292 55 GANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNGV--NTSFV 98 (326)
T ss_pred HHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcCC--ChhhE
Confidence 355677888999999888888888899 66667789995 55554
No 62
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=47.71 E-value=29 Score=24.68 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=24.8
Q ss_pred ccccCCcHHHHHHHHHcCccEEeeccCCC
Q psy11267 7 GHSLGNSMAVLRMFYKLGVRYLTLTHACP 35 (103)
Q Consensus 7 ~~~l~~~l~~l~~~y~lGvR~i~lt~n~~ 35 (103)
.-.+|++...++...+.|++.++++|...
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~~i~v~~g~~ 186 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTKTAGVAWTIK 186 (214)
T ss_pred EEEECCCHHHHHHHHHCCCeEEEEcCCCC
Confidence 34578999999999999999999999643
No 63
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=47.55 E-value=12 Score=22.00 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.7
Q ss_pred CCCHHHHHHhhhhc
Q psy11267 89 NVPDPVLKLVFPYL 102 (103)
Q Consensus 89 Nl~De~i~~ia~~~ 102 (103)
.+||+++++|+++|
T Consensus 74 ~ls~~e~~~l~ayl 87 (91)
T PF00034_consen 74 ILSDEEIADLAAYL 87 (91)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999886
No 64
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=47.29 E-value=90 Score=21.32 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHcCccEEeeccCCCCch-------HHHHHHHHhcCCeeec-----cCCC---------------HHHHHHHHHhc
Q psy11267 17 LRMFYKLGVRYLTLTHACPTPW-------YLVVRECNRLGMLIDL-----SHTS---------------VQTMRHVLNIS 69 (103)
Q Consensus 17 l~~~y~lGvR~i~lt~n~~n~~-------~~~i~~mn~lGmiiDl-----SH~s---------------~~t~~d~l~~s 69 (103)
|+...++|+..+.+.......+ .++.+.+.+.||-|=. .... .+.+..+++.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 4667788888888887543333 1777777888887322 1111 34555555554
Q ss_pred ---CCCEEEecCCc
Q psy11267 70 ---SAPVIFSHSSA 80 (103)
Q Consensus 70 ---~~Pvi~SHs~~ 80 (103)
..+.+..|++-
T Consensus 81 ~~lg~~~i~~~~g~ 94 (213)
T PF01261_consen 81 KRLGAKYIVVHSGR 94 (213)
T ss_dssp HHHTBSEEEEECTT
T ss_pred HHhCCCceeecCcc
Confidence 78999999874
No 65
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.04 E-value=20 Score=28.88 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcC-CCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISS-APVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~-~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
++++.+.+.| +++=+.|++.++......... .|+..|.... .....||.+|.+||+.|.+.
T Consensus 82 ~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~-~~~~~p~~mt~~eI~~ii~~ 145 (361)
T cd04747 82 KVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVG-PGKPVGREMTEADIDDVIAA 145 (361)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCc-CCCCCCccCCHHHHHHHHHH
Confidence 8888888888 788999998765422110111 2332222211 12356899999999998764
No 66
>PRK04311 selenocysteine synthase; Provisional
Probab=46.65 E-value=23 Score=29.47 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=43.7
Q ss_pred hcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 47 RLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 47 ~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
..++.++-.+++.....+.+...+.|||. --.--.++=.+|.+.+++...|++.|
T Consensus 404 ~~~v~~~~~~~~~~~l~~~lr~~~~~i~~-r~~~~~~~ld~r~~~~~~~~~~~~~~ 458 (464)
T PRK04311 404 SAAVTLTPKDRSLEALAARLRLLPPPVIG-RIEDGRLLLDLRTLEEEDEERLAAAL 458 (464)
T ss_pred eEEEEEeCCCCCHHHHHHHHhcCCCCEEE-EEECCEEEEEeCcCCHHHHHHHHHHH
Confidence 34555666678889999999999999887 34555677789999999999998876
No 67
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.62 E-value=52 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECN 46 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn 46 (103)
+...+.+++.|+|.+=+||+.++.+ +.|+++.
T Consensus 30 ~~i~~al~~~Gi~~iEitl~~~~~~-~~I~~l~ 61 (212)
T PRK05718 30 VPLAKALVAGGLPVLEVTLRTPAAL-EAIRLIA 61 (212)
T ss_pred HHHHHHHHHcCCCEEEEecCCccHH-HHHHHHH
Confidence 5678899999999999998765322 4555553
No 68
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=44.82 E-value=46 Score=25.62 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=46.7
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcC--CeeeccCCCHH---HHHHHHHhcCCCEEEecC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLG--MLIDLSHTSVQ---TMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lG--miiDlSH~s~~---t~~d~l~~s~~Pvi~SHs 78 (103)
|++.++..+..+.|.+-++. -+||.| ++++.+.+.| +++|-.+..-. ..........-.+|..+|
T Consensus 125 d~~~l~~~~~~~~~~i~i~~-p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s 203 (350)
T TIGR03537 125 RLEKVEKSILEETKIVWINY-PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHS 203 (350)
T ss_pred CHHHHHHhhhhccEEEEEeC-CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEee
Confidence 68888888888899888884 578888 5666666666 67787764211 111111222234788888
Q ss_pred Ccccc-CCCCC
Q psy11267 79 SAFAL-CPSPR 88 (103)
Q Consensus 79 ~~ral-~~~~R 88 (103)
-.+.+ .+.-|
T Consensus 204 ~SK~~g~~GlR 214 (350)
T TIGR03537 204 LSKRSGMTGYR 214 (350)
T ss_pred cccccCCcccc
Confidence 77776 44444
No 69
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=44.72 E-value=52 Score=25.78 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=45.2
Q ss_pred ccCCcHHHHHHHHHcC-ccEEeeccCCCCchHHHHHHHHhcCCeeeccCC--C------H-HHHHHHHHhcCCCEEEecC
Q psy11267 9 SLGNSMAVLRMFYKLG-VRYLTLTHACPTPWYLVVRECNRLGMLIDLSHT--S------V-QTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lG-vR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~--s------~-~t~~d~l~~s~~Pvi~SHs 78 (103)
+++.-++.|+.+++.| +|++|++-.....+-++.+.+.+.++-+++-.+ | + ..+.+.+.....+|++.-.
T Consensus 145 ~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~sp 224 (346)
T PRK09912 145 PMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTP 224 (346)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehh
Confidence 4455577899999999 999999954322222444545555553333211 1 2 3567777777888887555
Q ss_pred Cccc
Q psy11267 79 SAFA 82 (103)
Q Consensus 79 ~~ra 82 (103)
-+.+
T Consensus 225 l~~G 228 (346)
T PRK09912 225 LAQG 228 (346)
T ss_pred hcCc
Confidence 4444
No 70
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=43.93 E-value=56 Score=25.73 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=47.5
Q ss_pred HHHHHHH---hcCCeeeccCCC---HHHHHHHHHhcC-CCEEEecCCc-------cccC-------------------CC
Q psy11267 40 LVVRECN---RLGMLIDLSHTS---VQTMRHVLNISS-APVIFSHSSA-------FALC-------------------PS 86 (103)
Q Consensus 40 ~~i~~mn---~lGmiiDlSH~s---~~t~~d~l~~s~-~Pvi~SHs~~-------ral~-------------------~~ 86 (103)
++|++|+ +.-|++=+|--. |-+..|+.+.++ +.+++|=|-+ |+.. ..
T Consensus 122 evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~ 201 (279)
T cd05312 122 EVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSG 201 (279)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcC
Confidence 9999999 899999999754 778999999985 5677876522 2221 23
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.+||+++.+-|+.|
T Consensus 202 a~~itd~m~~aAA~aL 217 (279)
T cd05312 202 ARHITDEMFLAAAEAL 217 (279)
T ss_pred CeeCCHHHHHHHHHHH
Confidence 5789999998877654
No 71
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=43.26 E-value=16 Score=28.80 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=22.1
Q ss_pred CCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 78 SSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 78 s~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
.|.-+++...+.|||+++++||+.+
T Consensus 19 GNp~aVv~~a~~Lsd~~MQ~IA~e~ 43 (291)
T COG0384 19 GNPLAVVLDADGLSDEQMQAIAREF 43 (291)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHh
Confidence 5778889999999999999999865
No 72
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.23 E-value=1.4e+02 Score=22.30 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhc--CCeeeccCC-CHHHHHHHHHhcCCCEEEe
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRL--GMLIDLSHT-SVQTMRHVLNISSAPVIFS 76 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~l--GmiiDlSH~-s~~t~~d~l~~s~~Pvi~S 76 (103)
+...+.+++-|+|.+=+||+..+.+ ++|+++.+. .+.|=.--. +.+.+.++++ +..-+|.|
T Consensus 23 ~~~~~al~~~Gi~~iEit~~t~~a~-~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~-aGA~Fivs 86 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTLRTPVAL-DAIRLLRKEVPDALIGAGTVLNPEQLRQAVD-AGAQFIVS 86 (204)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccHH-HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-cCCCEEEC
Confidence 5688999999999999999764433 555555432 344443333 3333444433 45555544
No 73
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=42.99 E-value=24 Score=27.81 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=32.8
Q ss_pred cCCcHHHHHHHHHcC-ccEEeeccCCCCchH------------------------HHHHHHHhcCCeee
Q psy11267 10 LGNSMAVLRMFYKLG-VRYLTLTHACPTPWY------------------------LVVRECNRLGMLID 53 (103)
Q Consensus 10 l~~~l~~l~~~y~lG-vR~i~lt~n~~n~~~------------------------~~i~~mn~lGmiiD 53 (103)
+.+....|+.+++.| +|+||++-....... +++.-|.+.||.+-
T Consensus 119 ~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~ 187 (280)
T COG0656 119 IEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVE 187 (280)
T ss_pred HHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEE
Confidence 345677899999999 999999875422111 88888888888873
No 74
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=42.52 E-value=1.5e+02 Score=22.50 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCccEEeeccCC---------------CCchHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC---------------PTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~---------------~n~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs 78 (103)
...++.+.+.|+..+-+.-.. ...+.+++++..+.|+.+.+=-.++.....+++. ..- .+.|
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~-G~~-~i~H- 199 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRA-GVD-TIEH- 199 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC-EEee-
Confidence 447888888998877544321 0112288889999999988533445566666654 211 2344
Q ss_pred CccccCCCCCCCCHHHHHHhhhh
Q psy11267 79 SAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 79 ~~ral~~~~RNl~De~i~~ia~~ 101 (103)
--.+++++++.++++
T Consensus 200 --------~~~~~~~~~~~l~~~ 214 (342)
T cd01299 200 --------GFLIDDETIELMKEK 214 (342)
T ss_pred --------cCCCCHHHHHHHHHC
Confidence 445788888888764
No 75
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.19 E-value=39 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|.+.+.+|-+.+++++
T Consensus 63 ~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 63 LAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred HHHHHHHHHcCCeEEEEECCCCChHH
Confidence 56788889999999999999888776
No 76
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=41.00 E-value=60 Score=24.04 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCeeeccCCCHH-------HHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 38 WYLVVRECNRLGMLIDLSHTSVQ-------TMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 38 ~~~~i~~mn~lGmiiDlSH~s~~-------t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
+-++++...+.|+.|++ |+++. .+..+++. .|-++.|.. .++|++++.+++.
T Consensus 127 l~~~~~~A~~~g~~v~~-H~~e~~~~~g~~~i~~~~~~--~~~~i~H~~---------~l~~~~~~~la~~ 185 (263)
T cd01305 127 LEDILELLRRRGKLFAI-HASETRESVGMTDIERALDL--EPDLLVHGT---------HLTDEDLELVREN 185 (263)
T ss_pred HHHHHHHHHHCCCeeEE-ecCCCCCCCCchhHHHHHhC--CCCEEEEcC---------CCCHHHHHHHHHc
Confidence 44677777778887764 66643 34555554 443446654 4678888888764
No 77
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=40.62 E-value=89 Score=23.08 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHHHcCccEEeeccCCC--CchHHHHHHHHhcCCeeeccC
Q psy11267 15 AVLRMFYKLGVRYLTLTHACP--TPWYLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~--n~~~~~i~~mn~lGmiiDlSH 56 (103)
.-++...+.|++.|-+.|... ..+.++++++.+.|+++=.|=
T Consensus 84 ~ai~~a~~~g~~VIn~S~g~~~~~~l~~ai~~a~~~gilvv~Aa 127 (239)
T cd05561 84 RALDWLAEQGVRVVNISLAGPPNALLAAAVAAAAARGMVLVAAA 127 (239)
T ss_pred HHHHHHHHCCCCEEEeCCCCCCCHHHHHHHHHHHHCCCEEEEec
Confidence 457788899999999999642 223388888888898875554
No 78
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=40.42 E-value=1.5e+02 Score=21.84 Aligned_cols=51 Identities=6% Similarity=0.003 Sum_probs=40.1
Q ss_pred cCCcHHHHHHHHHcCccEEeeccCCCCchH-----HHHHHHHhcCCeeeccCCCHH
Q psy11267 10 LGNSMAVLRMFYKLGVRYLTLTHACPTPWY-----LVVRECNRLGMLIDLSHTSVQ 60 (103)
Q Consensus 10 l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~-----~~i~~mn~lGmiiDlSH~s~~ 60 (103)
+....+.++.+.++|+-.+++..|..-.+| +.++.+++.|+..--+..+..
T Consensus 59 f~~~~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~ 114 (239)
T smart00854 59 FRAPPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLA 114 (239)
T ss_pred ecCCHHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChH
Confidence 455678999999999999999988777777 677778888887766655543
No 79
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=40.23 E-value=60 Score=28.11 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHh---cCCeeeccCCC---HHHHHHHHHhcC-CCEEEecCCcccc--------------------------CCC
Q psy11267 40 LVVRECNR---LGMLIDLSHTS---VQTMRHVLNISS-APVIFSHSSAFAL--------------------------CPS 86 (103)
Q Consensus 40 ~~i~~mn~---lGmiiDlSH~s---~~t~~d~l~~s~-~Pvi~SHs~~ral--------------------------~~~ 86 (103)
++|++|++ .-|++=+|--. |-+..|+.+.++ +-+++|=|.+..+ ...
T Consensus 398 evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 477 (559)
T PTZ00317 398 EVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQ 477 (559)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhc
Confidence 99999996 99999999764 889999999985 4477776632211 235
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.+||+++.+-|+.|
T Consensus 478 a~~Itd~m~~aAA~aL 493 (559)
T PTZ00317 478 PSYIPDEMLIAAAASL 493 (559)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 6899999998877654
No 80
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=39.90 E-value=45 Score=22.32 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeeeccCCCHHHHHHHHHhc---CCCEEEecCCccccCCCCCCCCHHHHHHhhh
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQTMRHVLNIS---SAPVIFSHSSAFALCPSPRNVPDPVLKLVFP 100 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s---~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~ 100 (103)
+++++ .-++||.| .++++.+.++.+ +.|+|.-=|+. +++|++.|.+
T Consensus 63 ~~~~~---~DVvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~----------~~~~~~~l~~ 111 (124)
T PF01113_consen 63 ELLEE---ADVVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGF----------SDEQIDELEE 111 (124)
T ss_dssp HHTTH----SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSS----------HHHHHHHHHH
T ss_pred Hhccc---CCEEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCC----------CHHHHHHHHH
Confidence 44444 66999999 566776666664 79988877774 6777766654
No 81
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.77 E-value=98 Score=21.92 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred cHHHHHHHHHcCccEEeeccCC---CC--chHHHHHHHHhcCCee--------eccCCCHHHHHHHHHhcCCCEEE-ecC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHAC---PT--PWYLVVRECNRLGMLI--------DLSHTSVQTMRHVLNISSAPVIF-SHS 78 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~---~n--~~~~~i~~mn~lGmii--------DlSH~s~~t~~d~l~~s~~Pvi~-SHs 78 (103)
+++.++.+.++|.+.|-=.--. .+ .|++.=+...+.||-. ++.-...++|.++++.+..||.+ --|
T Consensus 17 ~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrs 96 (130)
T COG3453 17 SPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRS 96 (130)
T ss_pred CHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecC
Confidence 4678999999999976421100 01 2335555667788763 33344567899999999999874 345
Q ss_pred Ccccc-----CCCCCCCCHHHHHHhhh
Q psy11267 79 SAFAL-----CPSPRNVPDPVLKLVFP 100 (103)
Q Consensus 79 ~~ral-----~~~~RNl~De~i~~ia~ 100 (103)
+.|++ ..+.|-.+-+.+.+...
T Consensus 97 GtRs~~ly~~~~~~~gm~~de~~a~g~ 123 (130)
T COG3453 97 GTRSLNLYGLGELDGGMSRDEIEALGQ 123 (130)
T ss_pred CchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 55554 34666666666665543
No 82
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=39.47 E-value=35 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.5
Q ss_pred HHHHHHHhc----CCeeeccCCCH
Q psy11267 40 LVVRECNRL----GMLIDLSHTSV 59 (103)
Q Consensus 40 ~~i~~mn~l----GmiiDlSH~s~ 59 (103)
++.+.|.+. .++||+||.+-
T Consensus 247 ~a~~~l~~~~l~~~imVDcSH~NS 270 (348)
T PRK12756 247 AACDTLREFDLPEHLVVDFSHGNC 270 (348)
T ss_pred HHHHHHHHCCCCCcEEEECCCccc
Confidence 777777764 48999999873
No 83
>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]
Probab=39.06 E-value=57 Score=25.30 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHhcC--CeeeccCCC-H-HHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTS-V-QTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s-~-~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
++++..-..| ++.|++=.. + ..+..+......|++++|..-..-..+.+.+-+++...+.++
T Consensus 95 ~va~~a~~aG~~~inDv~g~~~~p~~la~va~e~~~~i~lmh~~~~~~~~~~~d~~~~~~~~l~~~ 160 (274)
T COG0294 95 EVAPLALGAGADEINDVDGGGIDPALLAAVAAELGAPILLMHEQGVPETMSINDLVAAVDMFLLAR 160 (274)
T ss_pred HHHHHHHHcccceeeecccCCCCHHHHHHHHHHcCCCEEEEcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 5666665554 678998776 5 455555558999999999987766666666666666655554
No 84
>PF12720 DUF3807: Protein of unknown function (DUF3807); InterPro: IPR024526 This is a family of conserved fungal proteins of unknown function.
Probab=39.02 E-value=19 Score=26.45 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=10.3
Q ss_pred CCCCCCHHHHHH
Q psy11267 86 SPRNVPDPVLKL 97 (103)
Q Consensus 86 ~~RNl~De~i~~ 97 (103)
..|-||||||.-
T Consensus 46 VKRTLTDEQI~I 57 (172)
T PF12720_consen 46 VKRTLTDEQIEI 57 (172)
T ss_pred CcccccHHHHHH
Confidence 579999999964
No 85
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=38.64 E-value=1.5e+02 Score=21.91 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHh--cCCeeeccCCCHHHHHHHHHhcCCCEEEe
Q psy11267 11 GNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNR--LGMLIDLSHTSVQTMRHVLNISSAPVIFS 76 (103)
Q Consensus 11 ~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~--lGmiiDlSH~s~~t~~d~l~~s~~Pvi~S 76 (103)
+.-....+.+++-|+|.+=+||+..+.+ ++|+++.+ -+++|=.--.-.....+..-.+.+.++.|
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~~a~-~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTPNAL-EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTSTTHH-HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCccHH-HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 3346688999999999999999865433 55554433 34555444433333333333344555544
No 86
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=38.28 E-value=25 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCccEEeeccCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC 34 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~ 34 (103)
...++.+|++|||.+++-...
T Consensus 94 ~~K~~ql~~lGvr~FailfDD 114 (306)
T PF07555_consen 94 KAKFDQLYDLGVRSFAILFDD 114 (306)
T ss_dssp HHHHHHHHCTT--EEEEE-TS
T ss_pred HHHHHHHHhcCCCEEEEeecC
Confidence 458899999999999998854
No 87
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=37.30 E-value=1.1e+02 Score=21.85 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCccEEeeccCCCCc-----hHHHHHHHHhcCCeeecc
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTP-----WYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~-----~~~~i~~mn~lGmiiDlS 55 (103)
.+.++...+.|++.+.+.|-.... +.+++++..+.|+++=+|
T Consensus 81 ~~ai~~a~~~~v~Vin~S~G~~~~~~~~~~~~~~~~a~~~g~l~V~a 127 (222)
T cd07492 81 EKALRACVENDIRIVNLSLGGPGDRDFPLLKELLEYAYKAGGIIVAA 127 (222)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHCCCEEEEE
Confidence 346777888999999999976443 338888888878877555
No 88
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.92 E-value=1.1e+02 Score=23.88 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|.+.+++|.|.+++++
T Consensus 148 i~al~~Ak~~Ga~tI~IT~~~~s~La 173 (299)
T PRK05441 148 IGALEYARERGALTIGISCNPGSPLS 173 (299)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhh
Confidence 56788889999999999998655443
No 89
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=36.65 E-value=97 Score=22.57 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCccEEeeccCCCCc---hHHHHHHHHhcCCeeeccCCCH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTP---WYLVVRECNRLGMLIDLSHTSV 59 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~---~~~~i~~mn~lGmiiDlSH~s~ 59 (103)
++.++...+.|++.+.+.|..... +.+.++++.+.|+++=.|=-++
T Consensus 110 ~~a~~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~g~ivV~aaGN~ 158 (259)
T cd07473 110 IKAIDYAVDMGAKIINNSWGGGGPSQALRDAIARAIDAGILFVAAAGND 158 (259)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 346667778999999999976543 3388888888888875554443
No 90
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=36.58 E-value=99 Score=22.79 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.2
Q ss_pred ccccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHh-cCCeee
Q psy11267 5 EGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNR-LGMLID 53 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~-lGmiiD 53 (103)
.|..++.+-.+.++.+++.|.+..-+|-|...+-.++.+.+.+ .|+-++
T Consensus 11 ~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~ 60 (236)
T TIGR01460 11 LGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS 60 (236)
T ss_pred cCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 3556677778899999999999999998876555566666666 555433
No 91
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=36.44 E-value=84 Score=23.54 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCccEEeeccCCCCc---------hHHHHHHHHhcCCeeeccCCCH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTP---------WYLVVRECNRLGMLIDLSHTSV 59 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~---------~~~~i~~mn~lGmiiDlSH~s~ 59 (103)
..-++...+.|+++|.+.|....+ +.++|++..+.|++|=.|=-.+
T Consensus 92 ~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~ 146 (247)
T cd07491 92 AKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQ 146 (247)
T ss_pred HHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCC
Confidence 456777888999999999965432 2288899899999987665443
No 92
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=36.37 E-value=1.3e+02 Score=19.90 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=52.4
Q ss_pred cccccCCcHHHHHHHHHcCccEEeeccCC--CCchHHHHHHHHhcCCeeeccC---CCHHHHHHHHHhcC---CC--EEE
Q psy11267 6 GGHSLGNSMAVLRMFYKLGVRYLTLTHAC--PTPWYLVVRECNRLGMLIDLSH---TSVQTMRHVLNISS---AP--VIF 75 (103)
Q Consensus 6 g~~~l~~~l~~l~~~y~lGvR~i~lt~n~--~n~~~~~i~~mn~lGmiiDlSH---~s~~t~~d~l~~s~---~P--vi~ 75 (103)
|+..|| .+..+.|.+.|-+.+.++... .....+++.++...|.-+..-+ .+......+++... .| +++
T Consensus 8 a~~giG--~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li 85 (167)
T PF00106_consen 8 ASSGIG--RALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILI 85 (167)
T ss_dssp TTSHHH--HHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEE
T ss_pred CCCHHH--HHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345555 567889999988888888754 1223388888887776444443 35555555555543 33 444
Q ss_pred ecCCccccCCCCCCCCHHHHHHh
Q psy11267 76 SHSSAFALCPSPRNVPDPVLKLV 98 (103)
Q Consensus 76 SHs~~ral~~~~RNl~De~i~~i 98 (103)
..++... ....-.+++|.++.+
T Consensus 86 ~~ag~~~-~~~~~~~~~~~~~~~ 107 (167)
T PF00106_consen 86 NNAGIFS-DGSLDDLSEEELERV 107 (167)
T ss_dssp EECSCTT-SBSGGGSHHHHHHHH
T ss_pred ccccccc-ccccccccchhhhhc
Confidence 4444433 333334455666554
No 93
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.91 E-value=1.9e+02 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHhc--CCeeeccCCCH-HHHHHHHHhcCCCEEEecCCc
Q psy11267 40 LVVRECNRL--GMLIDLSHTSV-QTMRHVLNISSAPVIFSHSSA 80 (103)
Q Consensus 40 ~~i~~mn~l--GmiiDlSH~s~-~t~~d~l~~s~~Pvi~SHs~~ 80 (103)
+++++.-+. .|+=|+|=... ..+.++++.++.|+|+.|+.-
T Consensus 87 ~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 87 EVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 556555554 47778877753 567778888889999999753
No 94
>PRK10281 hypothetical protein; Provisional
Probab=35.85 E-value=26 Score=27.33 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=22.5
Q ss_pred cCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 77 HSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 77 Hs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
..|.-+++.-..+|+||++++||+.+
T Consensus 17 ~GNpaaVv~~a~~L~~~~Mq~IAre~ 42 (299)
T PRK10281 17 RGNSAGVVLNADGLSEAQMQLIAREL 42 (299)
T ss_pred CCCceEEEcCCCCCCHHHHHHHHHHh
Confidence 56788888888899999999999865
No 95
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=35.62 E-value=1.6e+02 Score=22.91 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCH--------------HHHHHHHHhc-CCCEEEec
Q psy11267 19 MFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSV--------------QTMRHVLNIS-SAPVIFSH 77 (103)
Q Consensus 19 ~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~--------------~t~~d~l~~s-~~Pvi~SH 77 (103)
..+++|++-+.+..-...... .+.+.+.++|+.|=+ |.+. --+.++++.. +.|||..|
T Consensus 121 ~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~i-htG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H 199 (293)
T COG2159 121 RVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVI-HTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGH 199 (293)
T ss_pred HHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEE-EeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEe
Confidence 345578888888664322222 788899999987655 5443 4567777776 89999999
Q ss_pred CCc
Q psy11267 78 SSA 80 (103)
Q Consensus 78 s~~ 80 (103)
.+.
T Consensus 200 ~G~ 202 (293)
T COG2159 200 MGE 202 (293)
T ss_pred cCC
Confidence 984
No 96
>PRK13937 phosphoheptose isomerase; Provisional
Probab=35.09 E-value=84 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|.+.+++++
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 56788889999999999998877776
No 97
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=35.02 E-value=17 Score=27.29 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=19.6
Q ss_pred CCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 78 SSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 78 s~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
.|.-+++-.+.+|+|+++++||+.+
T Consensus 11 GNp~aVv~~~~~l~~~~mq~iA~e~ 35 (281)
T PF02567_consen 11 GNPAAVVLDADGLSDEQMQAIAREF 35 (281)
T ss_dssp SEEEEEEESSTTS-HHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 4666777777799999999999875
No 98
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=34.91 E-value=1.3e+02 Score=23.79 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHcC---ccEEeeccCCCCch--HHHHHHHHhcCCeeeccCCCH--HHHHHHHHhcCCCEEEecC
Q psy11267 12 NSMAVLRMFYKLG---VRYLTLTHACPTPW--YLVVRECNRLGMLIDLSHTSV--QTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 12 ~~l~~l~~~y~lG---vR~i~lt~n~~n~~--~~~i~~mn~lGmiiDlSH~s~--~t~~d~l~~s~~Pvi~SHs 78 (103)
.+.+.++.+++.+ +++++++= ..+ .++|+++.+.||.+=+.|.+. ..+.++++. ..-.++|.
T Consensus 146 ~~~~~~~~~~~~~~~~ik~~tlaP---E~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~--G~~~~tH~ 214 (374)
T cd00854 146 PDPEELKKWLEAAGGLIKLVTLAP---ELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFEA--GATHVTHL 214 (374)
T ss_pred cCHHHHHHHHHhcCCCEEEEEECC---CCCChHHHHHHHHHCCeEEEeeCCcCCHHHHHHHHHc--CCCeeeEC
Confidence 4678888888774 78876654 333 389999999999999999973 567777764 11225665
No 99
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.90 E-value=84 Score=24.87 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCCcc-ccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSSAF-ALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~r-al~~~~RNl~De~i~~ia~~ 101 (103)
++++.+.+.| +++=+.|.+.++... ....|.++..+... .-...||.+|.|+|+.+.+.
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~---~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~ 142 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGD---GSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAA 142 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCcc---cCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 7888888888 889999998766421 11223333222111 12346899999999998764
No 100
>PRK08204 hypothetical protein; Provisional
Probab=34.72 E-value=85 Score=25.12 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=11.3
Q ss_pred CCCCCHHHHHHhhhh
Q psy11267 87 PRNVPDPVLKLVFPY 101 (103)
Q Consensus 87 ~RNl~De~i~~ia~~ 101 (103)
--.+++++++.++++
T Consensus 251 ~~~~~~~~~~~la~~ 265 (449)
T PRK08204 251 GNDLSDDELKLLADS 265 (449)
T ss_pred cCCCCHHHHHHHHHc
Confidence 336889999988864
No 101
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=34.25 E-value=2.1e+02 Score=21.78 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCC
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~ 79 (103)
+++++.-+.| |+=|++-..+..+.+.++.++.|+|+.|+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCC
Confidence 5555555544 677777764455667777888999999975
No 102
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.19 E-value=2.4e+02 Score=23.39 Aligned_cols=60 Identities=8% Similarity=0.180 Sum_probs=44.3
Q ss_pred cCCcHHHHHHHHHcCccEEeeccCCCCchH--------------HHHHHHHhcCC------eeeccCCCHHHHHHHHHhc
Q psy11267 10 LGNSMAVLRMFYKLGVRYLTLTHACPTPWY--------------LVVRECNRLGM------LIDLSHTSVQTMRHVLNIS 69 (103)
Q Consensus 10 l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~--------------~~i~~mn~lGm------iiDlSH~s~~t~~d~l~~s 69 (103)
+..+.+.|+.+.+.|++.+.+--..-++-. +.|+.+.+.|| ++.+..-+.+++.+.++..
T Consensus 283 i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~ 362 (497)
T TIGR02026 283 IVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQL 362 (497)
T ss_pred ccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHH
Confidence 333568899999999999888775433211 88889999887 5555677788888888775
No 103
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=33.61 E-value=1.2e+02 Score=22.26 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=31.2
Q ss_pred HHHHHHHHcCccEEeeccCCCCc---hHHHHHHHHhcCCeeeccC
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTP---WYLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~---~~~~i~~mn~lGmiiDlSH 56 (103)
..++...+.|+|.+.+.|..... +.+++++..+.|+++=+|=
T Consensus 116 ~ai~~a~~~~~~iin~S~g~~~~~~~~~~~~~~a~~~gilvV~aa 160 (260)
T cd07484 116 NGIRYAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVVAAA 160 (260)
T ss_pred HHHHHHHHCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEeC
Confidence 35677788899999999965432 2288888888888886664
No 104
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=33.46 E-value=79 Score=26.75 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCccEEeeccC--C--CCchH--------------------HHHHHHHhcCC--eeec--cCCCHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHA--C--PTPWY--------------------LVVRECNRLGM--LIDL--SHTSVQ 60 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n--~--~n~~~--------------------~~i~~mn~lGm--iiDl--SH~s~~ 60 (103)
.+.|+.+.+|||..|.|.=- . ...|| ++|+++.+.|| ++|+ .|++..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~ 188 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPE 188 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence 46789999999999876421 1 11222 99999999876 5564 477643
No 105
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=33.42 E-value=71 Score=24.31 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCccEEeeccCCC-----CchHHHHHHHHhcCCeeeccC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACP-----TPWYLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~-----n~~~~~i~~mn~lGmiiDlSH 56 (103)
+..++...+.|++.+.+.|... +.+.++++++.+.|+++=.|=
T Consensus 114 ~~ai~~a~~~~~~iIn~S~g~~~~~~~~~~~~~~~~~~~~gv~iv~aa 161 (312)
T cd07489 114 IAAFLRAYEDGADVITASLGGPSGWSEDPWAVVASRIVDAGVVVTIAA 161 (312)
T ss_pred HHHHHHHHhcCCCEEEeCCCcCCCCCCCHHHHHHHHHHHCCCEEEEEC
Confidence 3466777889999999998643 445588888888888775543
No 106
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=33.40 E-value=64 Score=25.07 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=41.6
Q ss_pred ccccccCCcHHHHHHHHHc----CccEEeeccCCCCchHHHHHHH-HhcCCeeeccC
Q psy11267 5 EGGHSLGNSMAVLRMFYKL----GVRYLTLTHACPTPWYLVVREC-NRLGMLIDLSH 56 (103)
Q Consensus 5 Eg~~~l~~~l~~l~~~y~l----GvR~i~lt~n~~n~~~~~i~~m-n~lGmiiDlSH 56 (103)
.|..++.+..+.++.+... |++++-+|-|...+..+..+++ .++|+-++-.+
T Consensus 13 ~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~ 69 (321)
T TIGR01456 13 RGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQ 69 (321)
T ss_pred CCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHH
Confidence 4666777788889999888 9999999998777777777877 78898776544
No 107
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=33.34 E-value=95 Score=23.12 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=40.6
Q ss_pred CcccccccccCCcH--HH-HHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCCCHHH
Q psy11267 1 MIGVEGGHSLGNSM--AV-LRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQT 61 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l--~~-l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s~~t 61 (103)
|+.+||.+.-|.+- +. -+.|.+.|..++..-.-+.+++|+.|++.---+- .+++...+..
T Consensus 5 fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-~~~~~~~e~l 67 (208)
T COG0125 5 FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-EKLSPKAEAL 67 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCc-cCCCHHHHHH
Confidence 46789999888763 23 3444566887777777777999999999655443 4555555544
No 108
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.72 E-value=1.1e+02 Score=25.14 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=29.0
Q ss_pred ccCCcHHHHHHHHHcCccEEeeccCCCC----------chHHHHHHHHhc-CC
Q psy11267 9 SLGNSMAVLRMFYKLGVRYLTLTHACPT----------PWYLVVRECNRL-GM 50 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lGvR~i~lt~n~~n----------~~~~~i~~mn~l-Gm 50 (103)
+++.=++.++.+++.|++.+.++-..-| .+.++++++.+. |+
T Consensus 185 ~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi 237 (459)
T PRK14338 185 PLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGL 237 (459)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCc
Confidence 4444466788999999999988763222 244888888874 64
No 109
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=32.62 E-value=2.4e+02 Score=22.05 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecC
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs 78 (103)
+++++.-+.| |+=|++=+.+..+.++++.+..|+|..|+
T Consensus 101 ~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 101 EVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcC
Confidence 6777776655 45578777777888888888999999997
No 110
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.51 E-value=67 Score=20.59 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++.+.+.|++.+.+|-+.+++.+
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred hhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 56788889999999999998877665
No 111
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=32.43 E-value=1.3e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHcCccEEeeccCCCC---chHHHHHHHHhcCCeeeccCCC
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPT---PWYLVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n---~~~~~i~~mn~lGmiiDlSH~s 58 (103)
..++...+.|+|.+.+.|.... .+.++++++.+.|+++=.|--.
T Consensus 87 ~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~a~~~giliv~aaGN 133 (229)
T cd07477 87 AGIEWAIENGMDIINMSLGGPSDSPALREAIKKAYAAGILVVAAAGN 133 (229)
T ss_pred HHHHHHHHCCCCEEEECCccCCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence 4566677889999999996533 2337888888888888555433
No 112
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=32.30 E-value=45 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHHcCccEEeeccCCCCc---------hHHHHHHHHhcCCeeeccC
Q psy11267 16 VLRMFYKLGVRYLTLTHACPTP---------WYLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt~n~~n~---------~~~~i~~mn~lGmiiDlSH 56 (103)
.++.+.+.|++.+..--+.... -.+.+++|.++||++|=..
T Consensus 97 ~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~ 146 (191)
T cd07250 97 TVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDD 146 (191)
T ss_pred HHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCC
Confidence 4455555666665543332111 1167778888888888654
No 113
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.22 E-value=80 Score=20.68 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.3
Q ss_pred CccEEeeccCCCCchHHHHHHHHhcCCeeecc
Q psy11267 24 GVRYLTLTHACPTPWYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 24 GvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlS 55 (103)
|=|.+.+..-...|....+.+-.+.||+||..
T Consensus 16 anRviaIVsPESaPiKRii~eArdr~~LIDAT 47 (89)
T COG2052 16 ANRVIAIVSPESAPIKRIIQEARDRGMLIDAT 47 (89)
T ss_pred cceEEEEECCCcccHHHHHHHHHhcCcEEEcc
Confidence 34667776666677779999999999999964
No 114
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=32.15 E-value=2.1e+02 Score=21.19 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred ccccccccCCc---HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhc--CCeeeccCCCHHHHHHHHHh---------
Q psy11267 3 GVEGGHSLGNS---MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRL--GMLIDLSHTSVQTMRHVLNI--------- 68 (103)
Q Consensus 3 ~~Eg~~~l~~~---l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~l--GmiiDlSH~s~~t~~d~l~~--------- 68 (103)
.+-||+|+-.. .+.++.+.+.|+. ..+--|+..++. .++++... .+++|+-|+++..-......
T Consensus 43 t~SGGEPllq~~fl~~l~~~~k~~gi~-~~leTnG~~~~~-~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl 120 (213)
T PRK10076 43 TLSGGEVLMQAEFATRFLQRLRLWGVS-CAIETAGDAPAS-KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENL 120 (213)
T ss_pred EEeCchHHcCHHHHHHHHHHHHHcCCC-EEEECCCCCCHH-HHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHH
Confidence 34566665421 2456666777863 344444444443 33444332 68999999987654332221
Q ss_pred -----cCCCEEEecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 69 -----SSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 69 -----s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
...++.+...-.-+ =|-+.|.++++++.+
T Consensus 121 ~~l~~~g~~v~iR~~vIPg-----~nd~~e~i~~ia~~l 154 (213)
T PRK10076 121 RLLVSEGVNVIPRLPLIPG-----FTLSRENMQQALDVL 154 (213)
T ss_pred HHHHhCCCcEEEEEEEECC-----CCCCHHHHHHHHHHH
Confidence 23555554333322 356778888888754
No 115
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=32.12 E-value=97 Score=23.04 Aligned_cols=62 Identities=5% Similarity=0.086 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCeeeccCCCHH-HHHHHHHhcCCCEEEecC--------Cccc--------cCCCCCCCCHHHHHHhhhhc
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQ-TMRHVLNISSAPVIFSHS--------SAFA--------LCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~-t~~d~l~~s~~Pvi~SHs--------~~ra--------l~~~~RNl~De~i~~ia~~~ 102 (103)
+.+++|.+..+++|+|.-.+. ...++.+ .+.+++++=- |+.- +....|.+||+++.+-|+.|
T Consensus 113 ~~l~~m~~~~ivf~lsnP~~e~~~~~A~~-~ga~i~a~G~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~l 191 (226)
T cd05311 113 EMIKKMAKDPIVFALANPVPEIWPEEAKE-AGADIVATGRSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAI 191 (226)
T ss_pred HHHHhhCCCCEEEEeCCCCCcCCHHHHHH-cCCcEEEeCCCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHH
Confidence 889999999999999964333 3344443 3566555431 1111 12356889999998877654
No 116
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.84 E-value=1.4e+02 Score=23.75 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=36.5
Q ss_pred HHHHHHHhcCC--eeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLGM--LIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lGm--iiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
++++++.+.|- ++=+.|.+.++.. ...|+-.|-..+..-...||.+|.|+|+.|.+.
T Consensus 85 ~l~d~vh~~G~~i~~QL~H~G~~~~~-----~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~ 143 (337)
T PRK13523 85 KLVTFIHDHGAKAAIQLAHAGRKAEL-----EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLA 143 (337)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCCC-----CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 78888888774 5688998876421 123332222222223456899999999998764
No 117
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=31.81 E-value=60 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=24.3
Q ss_pred cccCCcHHHHHHHHHcCccEEeeccCCC
Q psy11267 8 HSLGNSMAVLRMFYKLGVRYLTLTHACP 35 (103)
Q Consensus 8 ~~l~~~l~~l~~~y~lGvR~i~lt~n~~ 35 (103)
=.+|+++..++.-...|++.++++|...
T Consensus 152 l~igD~~~Di~aA~~~Gi~~i~~~~g~~ 179 (205)
T TIGR01454 152 VMVGDAVTDLASARAAGTATVAALWGEG 179 (205)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEecCC
Confidence 3578889999999999999999999753
No 118
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=31.72 E-value=2.5e+02 Score=21.98 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=41.4
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEE
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVI 74 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi 74 (103)
.++.=-..++||-..+.+....+..++ +..+-|.+..=+|=+=|-+.....+..+.+..|||
T Consensus 54 R~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVI 121 (301)
T TIGR00670 54 RLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVI 121 (301)
T ss_pred HhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEE
Confidence 344455678999999999883333444 44444444333333447788889999999999988
No 119
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=31.51 E-value=2.3e+02 Score=22.64 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCccEEeeccCCCC-----chHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT-----PWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPR 88 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n-----~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~R 88 (103)
++.=-..++||-..+.+..+... .+.+.++-+.+..=+|-+-|.+.....+..+.++.|||= +-+-..||-
T Consensus 61 ~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVIN----a~~~~~HPt 136 (332)
T PRK04284 61 CAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWN----GLTDEDHPT 136 (332)
T ss_pred HHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEE----CCCCCCChH
Confidence 34444567888888877554321 222556666665656667799999999999999999983 223346663
No 120
>PLN00209 ribosomal protein S27; Provisional
Probab=31.18 E-value=47 Score=21.93 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=26.8
Q ss_pred HhcCCeeeccCCCHHHHHHHHHh-------------------cCCCEEEecCCccccC
Q psy11267 46 NRLGMLIDLSHTSVQTMRHVLNI-------------------SSAPVIFSHSSAFALC 84 (103)
Q Consensus 46 n~lGmiiDlSH~s~~t~~d~l~~-------------------s~~Pvi~SHs~~ral~ 84 (103)
+.++|.+|+.|-+.+.-..--.. .+..+|+||+...-.|
T Consensus 1 ~~~~~~~DLl~P~~~~e~~khK~k~Lv~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C 58 (86)
T PLN00209 1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 58 (86)
T ss_pred CccccchhccCCCHHHHHhhhhceeeecCCCCEEEEEECCCCCCeeEEEecCceEEEc
Confidence 46889999999988764433221 1477899998755444
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.06 E-value=39 Score=16.17 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCeeec
Q psy11267 40 LVVRECNRLGMLIDL 54 (103)
Q Consensus 40 ~~i~~mn~lGmiiDl 54 (103)
++.++|.+.|+..|.
T Consensus 21 ~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 21 ELFKEMLERGIEPDV 35 (35)
T ss_pred HHHHHHHHcCCCCCC
Confidence 788889888887663
No 122
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=30.55 E-value=2e+02 Score=20.44 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhc
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRL 48 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~l 48 (103)
++.++.+.+.|++.+.++|+..+ +.+.++.+.+.
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~-~~~~i~~l~~~ 52 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPG-ALEAIRALRKE 52 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChh-HHHHHHHHHHH
Confidence 56888999999999999998544 33566666543
No 123
>PRK13529 malate dehydrogenase; Provisional
Probab=30.53 E-value=1.1e+02 Score=26.69 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=47.5
Q ss_pred HHHHHHHh---cCCeeeccCCC---HHHHHHHHHhcCC-CEEEecCCcccc--------------------------CCC
Q psy11267 40 LVVRECNR---LGMLIDLSHTS---VQTMRHVLNISSA-PVIFSHSSAFAL--------------------------CPS 86 (103)
Q Consensus 40 ~~i~~mn~---lGmiiDlSH~s---~~t~~d~l~~s~~-Pvi~SHs~~ral--------------------------~~~ 86 (103)
++|++|++ .-|++=+|--. |-+..|+.+.++. -+++|=|-+..+ ...
T Consensus 399 evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~ 478 (563)
T PRK13529 399 EIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASG 478 (563)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcC
Confidence 99999998 99999998544 7789999999854 577777643221 124
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.+||+++.+-|+.|
T Consensus 479 a~~Itd~m~~aAA~al 494 (563)
T PRK13529 479 ARRVTDGMLMAAAHAL 494 (563)
T ss_pred CcCCCHHHHHHHHHHH
Confidence 5889999998877654
No 124
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.49 E-value=88 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCccEEeeccCCCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT 36 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n 36 (103)
++.++.+++-|++.+++++...+
T Consensus 27 ~~~~~~~~~~Gv~~vqlr~k~~~ 49 (187)
T PRK07455 27 LQMAEAVAAGGMRLIEITWNSDQ 49 (187)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC
Confidence 56788999999999999997654
No 125
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=30.46 E-value=1.3e+02 Score=24.61 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHc------CccEEeeccCCCCchH---------HHHHHHHhcC--CeeeccC
Q psy11267 11 GNSMAVLRMFYKL------GVRYLTLTHACPTPWY---------LVVRECNRLG--MLIDLSH 56 (103)
Q Consensus 11 ~~~l~~l~~~y~l------GvR~i~lt~n~~n~~~---------~~i~~mn~lG--miiDlSH 56 (103)
.-+++.++..++. .+|.+-++ |.+||.| ++++-+.+.| ++.|=..
T Consensus 181 ~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiY 242 (447)
T PLN02607 181 QVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIY 242 (447)
T ss_pred cCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 3467788777654 57778776 6679988 6666677767 4445443
No 126
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=30.26 E-value=1.9e+02 Score=23.20 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi 74 (103)
++.=-..++||-..+.+..+. ..++ +.++-+.+..=+|-+-|-+.....+..+.+..|||
T Consensus 61 ~SFe~A~~~LGg~~i~l~~~~-s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVI 126 (336)
T PRK03515 61 CSFEVAAYDQGARVTYLGPSG-SQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVW 126 (336)
T ss_pred HHHHHHHHHcCCcEEEeCCcc-ccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEE
Confidence 344455688999988886533 2333 55555555555556668999999999999999998
No 127
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=30.10 E-value=74 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCE-EEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 60 QTMRHVLNISSAPV-IFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 60 ~t~~d~l~~s~~Pv-i~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
..+.+.+..+..|| +.+|- ||||.+|+|..+|+++.
T Consensus 209 ~~L~~~l~~~~~~v~~~tH~------NHp~Eit~e~~~A~~~L 245 (369)
T COG1509 209 DELCEILGKSRKPVWLVTHF------NHPNEITPEAREACAKL 245 (369)
T ss_pred HHHHHHHhccCceEEEEccc------CChhhcCHHHHHHHHHH
Confidence 45667777777884 46774 69999999999998764
No 128
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=29.68 E-value=41 Score=23.99 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.3
Q ss_pred ccccCCcHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecC
Q psy11267 7 GHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 7 ~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs 78 (103)
+..++.++..+..+.++|..++-.-- .+.+..+.|+-+|..-+++. + ..|||...+
T Consensus 88 a~~l~r~l~l~~ql~e~g~P~vvvlN--------~~D~a~~~g~~id~~~Ls~~-----L---g~pvi~~sa 143 (156)
T PF02421_consen 88 ATNLERNLYLTLQLLELGIPVVVVLN--------KMDEAERKGIEIDAEKLSER-----L---GVPVIPVSA 143 (156)
T ss_dssp GGGHHHHHHHHHHHHHTTSSEEEEEE--------THHHHHHTTEEE-HHHHHHH-----H---TS-EEEEBT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEe--------CHHHHHHcCCEECHHHHHHH-----h---CCCEEEEEe
Confidence 34466677788888899988776665 67889999999997655543 2 578876654
No 129
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=29.42 E-value=2.3e+02 Score=22.58 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=44.6
Q ss_pred HHHHHHH----HHcCccEEe--eccCC--CCchH---HHHHHHHhcCCeeeccCCCHH------HHHHHHHh---cCCCE
Q psy11267 14 MAVLRMF----YKLGVRYLT--LTHAC--PTPWY---LVVRECNRLGMLIDLSHTSVQ------TMRHVLNI---SSAPV 73 (103)
Q Consensus 14 l~~l~~~----y~lGvR~i~--lt~n~--~n~~~---~~i~~mn~lGmiiDlSH~s~~------t~~d~l~~---s~~Pv 73 (103)
++.+..+ .+.|+..+. ++|.. ..... ++.+...+.|..++ .|+-.. ++..+++. +..|+
T Consensus 166 ~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~-~H~e~~~~~e~~av~~~~~~a~~~g~r~ 244 (415)
T cd01297 166 LAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQ-THVRYEGDSILEALDELLRLGRETGRPV 244 (415)
T ss_pred HHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEE-EEECcccccHHHHHHHHHHHHHHhCCCE
Confidence 4555555 467987765 34432 22222 77888889999998 677643 45555554 46899
Q ss_pred EEecCCcccc
Q psy11267 74 IFSHSSAFAL 83 (103)
Q Consensus 74 i~SHs~~ral 83 (103)
.++|-+...-
T Consensus 245 ~i~H~ss~~~ 254 (415)
T cd01297 245 HISHLKSAGA 254 (415)
T ss_pred EEEEEecCCC
Confidence 9999886654
No 130
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.36 E-value=1.3e+02 Score=22.00 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=36.9
Q ss_pred ccCCcHHHHHHHHHcCccEEeeccCCCCchH-----HHHHHHHhcCCeeeccCCC
Q psy11267 9 SLGNSMAVLRMFYKLGVRYLTLTHACPTPWY-----LVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~-----~~i~~mn~lGmiiDlSH~s 58 (103)
.+....+.++.+.++|+-.+++.-|..-.+| +.++.+++.||..=-+-.+
T Consensus 62 ~f~~~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~ 116 (239)
T cd07381 62 HFRAPPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRN 116 (239)
T ss_pred EecCCHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCC
Confidence 3455688999999999999999866666666 6667777778765444433
No 131
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=29.33 E-value=3.3e+02 Score=22.52 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=40.5
Q ss_pred cccc-ccccCC---cHHHHHHHHHc--CccEEeeccCCCCchHHHHHHHHhcC---CeeeccCCCHHHHHH
Q psy11267 3 GVEG-GHSLGN---SMAVLRMFYKL--GVRYLTLTHACPTPWYLVVRECNRLG---MLIDLSHTSVQTMRH 64 (103)
Q Consensus 3 ~~Eg-~~~l~~---~l~~l~~~y~l--GvR~i~lt~n~~n~~~~~i~~mn~lG---miiDlSH~s~~t~~d 64 (103)
++-| |+|+-. .++.++.+.+. |++ +.++=|+... -+.++++-+.| +.||+.+.+++....
T Consensus 83 ~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~-i~lsTNG~~l-~e~i~~L~~~gvd~V~islka~d~e~~~~ 151 (442)
T TIGR01290 83 GIAGPGDPLANIGKTFQTLELVARQLPDVK-LCLSTNGLML-PEHVDRLVDLGVGHVTITINAIDPAVGEK 151 (442)
T ss_pred EEecCCCcccCccccHHHHHHHHHhcCCCe-EEEECCCCCC-HHHHHHHHHCCCCeEEEeccCCCHHHHhh
Confidence 4557 888764 36777777776 654 5665555322 46778887764 679999998877643
No 132
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=29.18 E-value=1.7e+02 Score=23.67 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCccEEeeccC------CC--CchHHHHHHHHhcCC--eeeccCCCH-------HHHHHHHHhcCCCEEEe
Q psy11267 14 MAVLRMFYKLGVRYLTLTHA------CP--TPWYLVVRECNRLGM--LIDLSHTSV-------QTMRHVLNISSAPVIFS 76 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n------~~--n~~~~~i~~mn~lGm--iiDlSH~s~-------~t~~d~l~~s~~Pvi~S 76 (103)
++.++.+++.|+|.+.++-. .+ ..+.++++++.+... -+-++-+.+ ..+.+++. .|-++.
T Consensus 168 l~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~---~~~~~~ 244 (420)
T TIGR01578 168 VEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVYQ---HEKVYK 244 (420)
T ss_pred HHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHHh---cccccC
Confidence 56778899999999998731 11 245688888865421 233332222 22344443 232322
Q ss_pred -------cCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 77 -------HSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 77 -------Hs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
+.+-+-+..-.|..+-+++....++
T Consensus 245 ~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~ 276 (420)
T TIGR01578 245 FLHLPVQSGSDSVLKEMKREYTVSDFEDIVDK 276 (420)
T ss_pred ceEeCCccCCHHHHHhcCCCCCHHHHHHHHHH
Confidence 2333444455677777777666554
No 133
>PRK06108 aspartate aminotransferase; Provisional
Probab=29.10 E-value=90 Score=23.96 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcC--CeeeccCC
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLG--MLIDLSHT 57 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lG--miiDlSH~ 57 (103)
-+++.|+...+.+.|.+-++ +.+||.| ++++.+.+.| +++|-+|.
T Consensus 146 ~d~~~l~~~~~~~~~~i~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~ 201 (382)
T PRK06108 146 LDLDRLLAAITPRTRALFIN-SPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYE 201 (382)
T ss_pred CCHHHHHHhcCccceEEEEE-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhh
Confidence 36777777666678888887 5667777 6777777777 45575543
No 134
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.88 E-value=2.6e+02 Score=21.27 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHHHHHhc--CCeeeccCCCH-HHHHHHHHhcCCCEEEecCC
Q psy11267 40 LVVRECNRL--GMLIDLSHTSV-QTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 40 ~~i~~mn~l--GmiiDlSH~s~-~t~~d~l~~s~~Pvi~SHs~ 79 (103)
+++++.-+. .|+=|+|-... ..+.++++.++.|+|+.|+.
T Consensus 87 ~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~ 129 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMR 129 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCC
Confidence 666666554 48889998864 67778888889999999984
No 135
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=28.81 E-value=44 Score=22.71 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCC
Q psy11267 21 YKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHT 57 (103)
Q Consensus 21 y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~ 57 (103)
|+.|||.+-|-=-.......+++++.+.||--=+-.+
T Consensus 10 y~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~y~iq~v 46 (101)
T PF09633_consen 10 YKKGVRQLVLHTLPKRYEEFAIARLERQGIDYFIQPV 46 (101)
T ss_dssp HHCTS-SEEEEEEEGGGHHHHHHHHHHTT--EEEEE-
T ss_pred hhhhhhhHhhhhCCHhhHHHHHHHHHHCCCCEEEEEc
Confidence 5679998877543333344788889888886544433
No 136
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=28.79 E-value=28 Score=21.56 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=15.9
Q ss_pred CchHHHHHHHHhcCCeeeccC
Q psy11267 36 TPWYLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 36 n~~~~~i~~mn~lGmiiDlSH 56 (103)
|.-+.+|++|++.|++=--.+
T Consensus 34 nrAariid~lE~~GiV~p~~g 54 (63)
T smart00843 34 NRAARLIDQLEEEGIVGPANG 54 (63)
T ss_pred hHHHHHHHHHHHCcCCCCCCC
Confidence 556689999999999754433
No 137
>PLN02527 aspartate carbamoyltransferase
Probab=28.68 E-value=2.3e+02 Score=22.26 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=41.7
Q ss_pred cHHHHHHHHHcCccEEeeccCC-CCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEE
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHAC-PTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIF 75 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~-~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~ 75 (103)
.++.=-..++||-..+.+.... +..++ +.++-|.+..=+|=+=|-+..+..+..+.+..|||=
T Consensus 54 R~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 123 (306)
T PLN02527 54 RLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVIN 123 (306)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEE
Confidence 3444556789999999888742 23333 444444443333444488888999999999999983
No 138
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.60 E-value=79 Score=25.01 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=25.5
Q ss_pred HHHHHHHHcCccEEeeccCCCCchH----------------------HHHHHHHhcCCeeec
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWY----------------------LVVRECNRLGMLIDL 54 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~----------------------~~i~~mn~lGmiiDl 54 (103)
+.++.+.+.|.+++-||=....-|+ ++++++.+.||-+=+
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEE
Confidence 3788899999999999964332222 777777777775543
No 139
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=28.58 E-value=3.5e+02 Score=22.74 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=44.2
Q ss_pred ccccccccCCcHHHHHHHHHcCccEEeeccCCCCc-----------hH---HHHHHHHhcCCe---ee----ccCCCHHH
Q psy11267 3 GVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTP-----------WY---LVVRECNRLGML---ID----LSHTSVQT 61 (103)
Q Consensus 3 ~~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~-----------~~---~~i~~mn~lGmi---iD----lSH~s~~t 61 (103)
++|.+.|=.-+.+.|+.+.+.|+..+.+.-..-++ +. +.++.+.+.|+- +| +-.-+...
T Consensus 258 TvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed 337 (488)
T PRK08207 258 TVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEE 337 (488)
T ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHH
Confidence 45554433336789999999999988887754331 11 777777888872 33 44566777
Q ss_pred HHHHHHhc
Q psy11267 62 MRHVLNIS 69 (103)
Q Consensus 62 ~~d~l~~s 69 (103)
+.+.++..
T Consensus 338 ~~~tl~~l 345 (488)
T PRK08207 338 VKHTLEEI 345 (488)
T ss_pred HHHHHHHH
Confidence 77766664
No 140
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=28.53 E-value=1e+02 Score=26.86 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=47.4
Q ss_pred HHHHHHH---hcCCeeeccCC---CHHHHHHHHHhcC-CCEEEecCCcc-------cc-------------------CCC
Q psy11267 40 LVVRECN---RLGMLIDLSHT---SVQTMRHVLNISS-APVIFSHSSAF-------AL-------------------CPS 86 (103)
Q Consensus 40 ~~i~~mn---~lGmiiDlSH~---s~~t~~d~l~~s~-~Pvi~SHs~~r-------al-------------------~~~ 86 (103)
++|++|. +.-|++=+|-- +|-+..|+.+.++ +-+++|=|-+. +. ...
T Consensus 418 evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 418 EVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcC
Confidence 9999995 89999999965 5889999999985 55778754221 11 234
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|.+||+++.+-|+.|
T Consensus 498 a~~Itd~m~~aAA~aL 513 (581)
T PLN03129 498 AIRVTDDMLLAAAEAL 513 (581)
T ss_pred CcCCCHHHHHHHHHHH
Confidence 6889999988776654
No 141
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=28.41 E-value=82 Score=21.74 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|-+.+++++
T Consensus 96 ~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 96 LKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 56778888889999999988777765
No 142
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.36 E-value=2.5e+02 Score=20.87 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHh--cCCeeeccCCCHHHHHHHHHhcCCCEEEe
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNR--LGMLIDLSHTSVQTMRHVLNISSAPVIFS 76 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~--lGmiiDlSH~s~~t~~d~l~~s~~Pvi~S 76 (103)
+...+.+++-|+|.+=+||+..+.+ ++|+++.+ -+++|=.--.-+....+..-.+..-+|.|
T Consensus 19 ~~ia~al~~gGi~~iEit~~tp~a~-~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 19 VPLARALAAGGLPAIEITLRTPAAL-DAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHH-HHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5678999999999999999854433 45555532 23544444333333223333344444444
No 143
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.19 E-value=1.1e+02 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGM 50 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGm 50 (103)
-+.++.|+++|+|++.-.+-.-.+-...-+|+.+.|.
T Consensus 76 ~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 76 AAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred HHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 4689999999999998777543322345666666554
No 144
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.04 E-value=2.2e+02 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|.+.+++|-+.+++++
T Consensus 144 i~al~~Ak~~Ga~~IaIT~~~~s~La 169 (296)
T PRK12570 144 IGALEYAKQIGATTIALSCNPDSPIA 169 (296)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhH
Confidence 56788999999999999988665444
No 145
>CHL00183 petJ cytochrome c553; Provisional
Probab=27.99 E-value=46 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHhhhhc
Q psy11267 86 SPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 86 ~~RNl~De~i~~ia~~~ 102 (103)
....++|++++.|++++
T Consensus 84 f~~~Ls~~ei~~i~aYi 100 (108)
T CHL00183 84 FGGRLSDEDIEDVANYV 100 (108)
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 34579999999999986
No 146
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.83 E-value=51 Score=15.99 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.2
Q ss_pred CCCCHHHHHHhhh
Q psy11267 88 RNVPDPVLKLVFP 100 (103)
Q Consensus 88 RNl~De~i~~ia~ 100 (103)
+++||+-+++|++
T Consensus 13 ~~itD~gl~~l~~ 25 (26)
T smart00367 13 TNITDEGLQALAK 25 (26)
T ss_pred CCcCHHHHHHHhc
Confidence 5788888888875
No 147
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.69 E-value=1.6e+02 Score=19.20 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=22.0
Q ss_pred HHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCe
Q psy11267 17 LRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGML 51 (103)
Q Consensus 17 l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmi 51 (103)
++.|++.|.|.+++.....+... -+.+.+.+.|+-
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~ 41 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIE 41 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCC
Confidence 47899999999998884333222 445555666653
No 148
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=27.52 E-value=1.6e+02 Score=22.99 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCC
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPS 86 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~ 86 (103)
++++++...||=|-+===.+..-.++.....+|+|=-|+++++=+.+
T Consensus 115 ~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~ 161 (243)
T COG0854 115 DAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHD 161 (243)
T ss_pred HHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCC
Confidence 89999999998665443366677777788899999999999996655
No 149
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=27.43 E-value=78 Score=22.66 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=40.9
Q ss_pred cHHHHHHHH-HcCccEEeeccCC--CCc----hH-HHHHHHHhcCCeeeccCCC-------------HHHHHHHHHhc-C
Q psy11267 13 SMAVLRMFY-KLGVRYLTLTHAC--PTP----WY-LVVRECNRLGMLIDLSHTS-------------VQTMRHVLNIS-S 70 (103)
Q Consensus 13 ~l~~l~~~y-~lGvR~i~lt~n~--~n~----~~-~~i~~mn~lGmiiDlSH~s-------------~~t~~d~l~~s-~ 70 (103)
.++.++... +.|+|-+.+.=.. ..+ +- .+.+.++++|+.|.+ |++ ..-+.++++.. +
T Consensus 86 ~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~-H~g~~~~~~~~~~~~~~~~~~~~~~~~P~ 164 (273)
T PF04909_consen 86 AVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLI-HTGMTGFPDAPSDPADPEELEELLERFPD 164 (273)
T ss_dssp HHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEE-EESHTHHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred HHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceee-eccccchhhhhHHHHHHHHHHHHHHHhcC
Confidence 355666666 8888766643321 111 12 799999999999984 654 11122233322 5
Q ss_pred CCEEEecCCcc
Q psy11267 71 APVIFSHSSAF 81 (103)
Q Consensus 71 ~Pvi~SHs~~r 81 (103)
.+||+.|.+.-
T Consensus 165 l~ii~~H~G~~ 175 (273)
T PF04909_consen 165 LRIILAHLGGP 175 (273)
T ss_dssp SEEEESGGGTT
T ss_pred CeEEEecCccc
Confidence 67999999866
No 150
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.36 E-value=1e+02 Score=20.28 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|-+.+++++
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 64 VAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 56778888889999999988887766
No 151
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=27.34 E-value=26 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=16.6
Q ss_pred cccccCCcHHHHHHHHHcCccE
Q psy11267 6 GGHSLGNSMAVLRMFYKLGVRY 27 (103)
Q Consensus 6 g~~~l~~~l~~l~~~y~lGvR~ 27 (103)
|++.++ +++.|.||..|.++
T Consensus 81 GAdliE--IGNfDsFY~qGr~f 100 (242)
T PF04481_consen 81 GADLIE--IGNFDSFYAQGRRF 100 (242)
T ss_pred CCCEEE--ecchHHHHhcCCee
Confidence 666665 89999999999874
No 152
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=27.20 E-value=1.1e+02 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=35.1
Q ss_pred cCCcHH-HHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeeeccCCC
Q psy11267 10 LGNSMA-VLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 10 l~~~l~-~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiDlSH~s 58 (103)
.|+... ..-.+.++|.+.--++--++..|| .++++|++.|| |++|+.
T Consensus 171 ~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L~~~GV--Dts~v~ 219 (496)
T PLN02543 171 PGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMMNKERV--QTRAVK 219 (496)
T ss_pred cCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCC--cccceE
Confidence 344433 344567889999888888899999 77889999998 555554
No 153
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.84 E-value=1.2e+02 Score=24.83 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=41.7
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCCccccC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALC 84 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~ 84 (103)
+++.++...+-..|.+-+.+ ..||.| ++.+-..+.| +++|-++.+...... ++ ...-|+.||.-+.+.
T Consensus 138 d~e~l~~ai~~~tklV~l~s-p~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p-l~--~gaDivv~S~tK~lg 213 (431)
T PRK08248 138 DPENFEAAITDKTKALFAET-IGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP-IE--HGADIVVHSATKFIG 213 (431)
T ss_pred CHHHHHHhcCCCCeEEEEEC-CCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh-hH--cCCCEEEEcCccccC
Confidence 56677766666788887774 346666 6666666667 678999875432222 22 223345566555555
Q ss_pred CC
Q psy11267 85 PS 86 (103)
Q Consensus 85 ~~ 86 (103)
.|
T Consensus 214 g~ 215 (431)
T PRK08248 214 GH 215 (431)
T ss_pred CC
Confidence 43
No 154
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=26.70 E-value=95 Score=26.05 Aligned_cols=54 Identities=31% Similarity=0.314 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCccEEeecc--CC---------------CCchH------HHHHHHHhcCC--eeec--cCCCHHH--HHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTH--AC---------------PTPWY------LVVRECNRLGM--LIDL--SHTSVQT--MRH 64 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~--n~---------------~n~~~------~~i~~mn~lGm--iiDl--SH~s~~t--~~d 64 (103)
.+.|+.+.++||-.|-|+= .. +..|| ++|+++.+.|| ++|+ .|+|... |.+
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~ 110 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQE 110 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHH
Confidence 4588999999999886542 11 11233 99999999888 6674 6888765 446
Q ss_pred HHH
Q psy11267 65 VLN 67 (103)
Q Consensus 65 ~l~ 67 (103)
+.+
T Consensus 111 ~~~ 113 (539)
T TIGR02456 111 ARS 113 (539)
T ss_pred Hhh
Confidence 554
No 155
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=26.68 E-value=41 Score=21.45 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=11.7
Q ss_pred CCCCCCCCHHHHHHhhhhc
Q psy11267 84 CPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 84 ~~~~RNl~De~i~~ia~~~ 102 (103)
.+..|.|+|+++..+.+++
T Consensus 63 ~~~~~TLt~~ev~~~~~~i 81 (94)
T PF03147_consen 63 QSPDRTLTDEEVNEIHDKI 81 (94)
T ss_dssp --SSS---HHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHH
Confidence 4788999999999887654
No 156
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.59 E-value=38 Score=26.00 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
++++.+.+.| +++=+.|.+.++..... ...|+-.|-.........||.+|.++|+.+.+.
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~ 142 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLT--GGPPPAPSAIPSPGGGEPPREMTKEEIEQIIED 142 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCC--CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 7888888878 67788898776433211 112332232222333467899999999998764
No 157
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.52 E-value=1.7e+02 Score=23.19 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=53.9
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH--HHHHHHHhcCCeee--c--cC-CCHHHHHHHHHhcCCCEEEecCCccccCC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY--LVVRECNRLGMLID--L--SH-TSVQTMRHVLNISSAPVIFSHSSAFALCP 85 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~--~~i~~mn~lGmiiD--l--SH-~s~~t~~d~l~~s~~Pvi~SHs~~ral~~ 85 (103)
..+.++...+.|++.+-+.-.++.... +.++...++|+-+- + +| .++.-+.+.++... .....+-.+++
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~----~~Ga~~i~i~D 164 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLME----SYGADCVYIVD 164 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHH----hcCCCEEEEcc
Confidence 567788888899888887766644222 88888888887543 2 34 33344444443321 11234556778
Q ss_pred CCCCCCHHHHHHhhhhc
Q psy11267 86 SPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 86 ~~RNl~De~i~~ia~~~ 102 (103)
.--.++.++++.+.+.+
T Consensus 165 T~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRAL 181 (333)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 88788888777766554
No 158
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.51 E-value=2.2e+02 Score=22.85 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCccEEeeccCCCC------chH---HHHHHHHh--cCCeeeccCCCHHHHHHHHHhc-CCCEEEecCCcc
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT------PWY---LVVRECNR--LGMLIDLSHTSVQTMRHVLNIS-SAPVIFSHSSAF 81 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n------~~~---~~i~~mn~--lGmiiDlSH~s~~t~~d~l~~s-~~Pvi~SHs~~r 81 (103)
+..++.||++||+ |-|..=. .|. ++|.+=.- +|++|=-=-....-..+.+..+ +.|+|=.-.-=|
T Consensus 188 ~Raier~Y~lGv~---PDWWKLePl~~~~aW~~i~~~I~~~DP~cRGiViLGLdAP~~eL~~sF~aaa~~piVKGFAVGR 264 (310)
T COG3892 188 PRAIERFYNLGVY---PDWWKLEPLASPDAWAEIEAAIERRDPHCRGIVILGLDAPLEELEDSFAAAAGFPIVKGFAVGR 264 (310)
T ss_pred HHHHHHHHHcCCC---cccccCCCCCChHHHHHHHHHHHhcCcccceeEEecccCcHHHHHHHHHhhcCCCeeeeeecch
Confidence 4578999999998 7786433 344 34433211 7888765566777777777776 569887777667
Q ss_pred ccCCC------CCCCCHHHHH-Hhhhh
Q psy11267 82 ALCPS------PRNVPDPVLK-LVFPY 101 (103)
Q Consensus 82 al~~~------~RNl~De~i~-~ia~~ 101 (103)
.++.. .+.++|+|.- .++++
T Consensus 265 TiF~daar~WL~g~i~D~qaia~ma~~ 291 (310)
T COG3892 265 TIFADAARAWLGGDIDDEQAIADMAAK 291 (310)
T ss_pred hhhHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 77654 3688888853 34433
No 159
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=26.40 E-value=1.5e+02 Score=23.24 Aligned_cols=42 Identities=7% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHcCccEEeeccCCC-CchH-----HHHHHHHhcCCeeeccCC
Q psy11267 16 VLRMFYKLGVRYLTLTHACP-TPWY-----LVVRECNRLGMLIDLSHT 57 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt~n~~-n~~~-----~~i~~mn~lGmiiDlSH~ 57 (103)
.+..+.+.||+-|=+-+... .+.. +++++..+.+++||.==+
T Consensus 111 ~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 111 AFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 56777788888887777543 3333 899999999999997443
No 160
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=26.38 E-value=60 Score=25.72 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCCccc---------cCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFA---------LCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ra---------l~~~~RNl~De~i~~ia~~ 101 (103)
++++.+.+.| +++=+.|.+.++..........|+-.|...... -...||.+|.++|+.+.+.
T Consensus 81 ~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 153 (338)
T cd02933 81 KVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVAD 153 (338)
T ss_pred HHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHH
Confidence 7777777777 688999988765322110011233333322211 1246899999999998764
No 161
>PRK06687 chlorohydrolase; Validated
Probab=26.33 E-value=1.9e+02 Score=22.94 Aligned_cols=17 Identities=0% Similarity=-0.037 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHhhhh
Q psy11267 85 PSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 85 ~~~RNl~De~i~~ia~~ 101 (103)
.|--.++|++++.+++.
T Consensus 251 ~H~~~~~~~~~~~la~~ 267 (419)
T PRK06687 251 AHGVELNEREIERLASS 267 (419)
T ss_pred EEEecCCHHHHHHHHHc
Confidence 34445789999988874
No 162
>KOG1257|consensus
Probab=26.22 E-value=1.7e+02 Score=25.61 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHH---HhcCCeeeccCC---CHHHHHHHHHhcCCCEE-EecCCcccc--------------------------CCC
Q psy11267 40 LVVREC---NRLGMLIDLSHT---SVQTMRHVLNISSAPVI-FSHSSAFAL--------------------------CPS 86 (103)
Q Consensus 40 ~~i~~m---n~lGmiiDlSH~---s~~t~~d~l~~s~~Pvi-~SHs~~ral--------------------------~~~ 86 (103)
++|++| |++-++.=+|-- +|-|..|+...++.-+| +|=|-+..+ +..
T Consensus 406 evl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg 485 (582)
T KOG1257|consen 406 EVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSG 485 (582)
T ss_pred HHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcC
Confidence 888888 457888888864 45578999999876544 443332222 235
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.|++||+.+.+-++.|
T Consensus 486 ~~~i~D~mfl~Aae~L 501 (582)
T KOG1257|consen 486 ARRIPDEMFLAAAEAL 501 (582)
T ss_pred CccCCHHHHHHHHHHH
Confidence 6999999999888766
No 163
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=26.11 E-value=2.1e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 62 MRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 62 ~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
..+.|+.++.-.|.+|. ||||.++++.++++.+.
T Consensus 208 ll~~Lk~~~~~~v~~h~------nhp~Eit~~a~~Al~~L 241 (417)
T TIGR03820 208 LVAILKKHHPVWLNTHF------NHPREITASSKKALAKL 241 (417)
T ss_pred HHHHHHhcCCeEEEEeC------CChHhChHHHHHHHHHH
Confidence 33444444422344555 47788888888887654
No 164
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.08 E-value=1.3e+02 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGM 50 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGm 50 (103)
-+.++.++++|+|.+..++-.-+.-...-+|+.+.|.
T Consensus 73 ~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 73 AGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred HHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 4688999999999999988542222245677777776
No 165
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.95 E-value=3.3e+02 Score=21.44 Aligned_cols=71 Identities=6% Similarity=0.090 Sum_probs=38.1
Q ss_pred cCccEEeeccCCC-----CchHHHHHHHHhcC----Ceeecc-------CCCHHHHHHHHHhcCCCE-EEecCCccccCC
Q psy11267 23 LGVRYLTLTHACP-----TPWYLVVRECNRLG----MLIDLS-------HTSVQTMRHVLNISSAPV-IFSHSSAFALCP 85 (103)
Q Consensus 23 lGvR~i~lt~n~~-----n~~~~~i~~mn~lG----miiDlS-------H~s~~t~~d~l~~s~~Pv-i~SHs~~ral~~ 85 (103)
.|++-+.+|-... ..+.++++++.+.+ +-+-.. -..+ ...+.++.+..++ +.||- +
T Consensus 158 ~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~-el~~~L~~~~~~~~~vsh~------n 230 (331)
T TIGR00238 158 PEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITD-ELCELLASFELQLMLVTHI------N 230 (331)
T ss_pred CCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCH-HHHHHHHhcCCcEEEEccC------C
Confidence 4788777776321 11336666666542 112111 1222 3445666666563 46655 5
Q ss_pred CCCCCCHHHHHHhhh
Q psy11267 86 SPRNVPDPVLKLVFP 100 (103)
Q Consensus 86 ~~RNl~De~i~~ia~ 100 (103)
|++.++++..+++..
T Consensus 231 h~~Ei~~~~~~ai~~ 245 (331)
T TIGR00238 231 HCNEITEEFAEAMKK 245 (331)
T ss_pred ChHhCCHHHHHHHHH
Confidence 677777877777743
No 166
>PRK12677 xylose isomerase; Provisional
Probab=25.93 E-value=3.6e+02 Score=21.85 Aligned_cols=78 Identities=13% Similarity=0.295 Sum_probs=51.0
Q ss_pred ccccccccCCc-------HHHHHHHHHcCccEEeeccCCCCch-----------HHHHHHHHhcCCeeecc------C--
Q psy11267 3 GVEGGHSLGNS-------MAVLRMFYKLGVRYLTLTHACPTPW-----------YLVVRECNRLGMLIDLS------H-- 56 (103)
Q Consensus 3 ~~Eg~~~l~~~-------l~~l~~~y~lGvR~i~lt~n~~n~~-----------~~~i~~mn~lGmiiDlS------H-- 56 (103)
|.+|.+++|.- .+.++.+.++|++.|.+..+...+| .++-+.+.+.|+-|-.. |
T Consensus 16 ~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~ 95 (384)
T PRK12677 16 GWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPV 95 (384)
T ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcc
Confidence 45677777653 4688999999999999964432333 26667778899987742 2
Q ss_pred --------CCHHH-------HHHHHHhc---CCCEEEecCCc
Q psy11267 57 --------TSVQT-------MRHVLNIS---SAPVIFSHSSA 80 (103)
Q Consensus 57 --------~s~~t-------~~d~l~~s---~~Pvi~SHs~~ 80 (103)
..+.. +.++++++ ..|.|.-|++-
T Consensus 96 ~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~ 137 (384)
T PRK12677 96 FKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGR 137 (384)
T ss_pred ccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCC
Confidence 22322 44444554 68988888873
No 167
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.86 E-value=94 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|.+.+++++
T Consensus 130 i~a~~~Ak~~G~~vI~iT~~~~s~La 155 (196)
T PRK13938 130 LRAAKTARELGVTVVAMTGESGGQLA 155 (196)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhh
Confidence 56788889999999999999888877
No 168
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.79 E-value=1.7e+02 Score=23.90 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=41.7
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCc-----------hH---HHHHHHHhcCCeeecc------CCCHHHHHHHHHhc
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTP-----------WY---LVVRECNRLGMLIDLS------HTSVQTMRHVLNIS 69 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~-----------~~---~~i~~mn~lGmiiDlS------H~s~~t~~d~l~~s 69 (103)
+.+.++.+.+.|++.+.+--..-++ .. ++++.+.+.||-+..+ .-+.+.+.+.++..
T Consensus 286 ~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 286 DYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 5788999999999998887754321 11 8888999999877654 55667777777664
No 169
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.74 E-value=1e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+.+|-+.+++++
T Consensus 89 i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 89 VTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchH
Confidence 56788889999999999999888887
No 170
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=25.67 E-value=1.9e+02 Score=18.54 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=38.7
Q ss_pred HHHHHHHhcCC-eeeccCCCHHHHHHHHHhcCCCEE--EecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 40 LVVRECNRLGM-LIDLSHTSVQTMRHVLNISSAPVI--FSHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 40 ~~i~~mn~lGm-iiDlSH~s~~t~~d~l~~s~~Pvi--~SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
++.+++...++ +..+..-..+...+.+.....|-+ .... ....-.....+.+++++..++|
T Consensus 48 ~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g--~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 48 EVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING--QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred HHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC--EEEEEecCCCCHHHHHHHHhcC
Confidence 78888865544 456666566677777888899933 3433 3333444556778877766554
No 171
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.59 E-value=1.3e+02 Score=23.44 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcCCee--eccC
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLGMLI--DLSH 56 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lGmii--DlSH 56 (103)
-+++.++.....+.|.+-++ |.+||-| ++++-+.+.+++| |=.+
T Consensus 154 ~d~~~l~~~~~~~~k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y 208 (396)
T PRK09147 154 PDFDAVPAEVWARTQLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY 208 (396)
T ss_pred cCHHHHHHHHhhccEEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc
Confidence 35777766655688988887 7789988 6666677777544 5444
No 172
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.54 E-value=2.3e+02 Score=22.23 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=43.2
Q ss_pred cccccccCCcHHHHHHHHHcCcc--EEeeccCCCCc---hH--HHHHHHHhcC----CeeeccCCCHHHHHHHHHhc
Q psy11267 4 VEGGHSLGNSMAVLRMFYKLGVR--YLTLTHACPTP---WY--LVVRECNRLG----MLIDLSHTSVQTMRHVLNIS 69 (103)
Q Consensus 4 ~Eg~~~l~~~l~~l~~~y~lGvR--~i~lt~n~~n~---~~--~~i~~mn~lG----miiDlSH~s~~t~~d~l~~s 69 (103)
+.++-.+..-++.++.+.+.|.. ++-++|. |+ .| ++++++.+.| ++.|+-.=-..-+.++++..
T Consensus 72 L~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~--Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~ 146 (265)
T COG0159 72 LAAGVTLEDTLELVEEIRAKGVKVPIVLMTYY--NPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH 146 (265)
T ss_pred HHCCCCHHHHHHHHHHHHhcCCCCCEEEEEec--cHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc
Confidence 34555666668888888877655 8999985 43 22 7788888877 57777665555566665543
No 173
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.52 E-value=97 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|-+.+++++
T Consensus 128 i~~~~~ak~~g~~iI~iT~~~~s~l~ 153 (192)
T PRK00414 128 IKAIEAARAKGMKVITLTGKDGGKMA 153 (192)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 56788888999999999998888776
No 174
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=25.22 E-value=2e+02 Score=22.82 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCccEEee--ccCC---C------------CchH------HHHHHHHhcCCee--ec--cCCCHHHHHHHH
Q psy11267 14 MAVLRMFYKLGVRYLTL--THAC---P------------TPWY------LVVRECNRLGMLI--DL--SHTSVQTMRHVL 66 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~l--t~n~---~------------n~~~------~~i~~mn~lGmii--Dl--SH~s~~t~~d~l 66 (103)
.+.|+.+.+||+-.+-+ .+.. + -.|| ++|+++.++||-| |+ .|+|...-+..-
T Consensus 32 ~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~ 111 (505)
T COG0366 32 TEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKE 111 (505)
T ss_pred HHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHH
Confidence 34999999999877744 3432 1 1233 9999999999754 55 899998865554
Q ss_pred Hhc
Q psy11267 67 NIS 69 (103)
Q Consensus 67 ~~s 69 (103)
...
T Consensus 112 ~~~ 114 (505)
T COG0366 112 ARS 114 (505)
T ss_pred Hhc
Confidence 443
No 175
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=25.19 E-value=2e+02 Score=22.98 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeecc---CCCHHHHHHHHHhcCCCEEE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLS---HTSVQTMRHVLNISSAPVIF 75 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlS---H~s~~t~~d~l~~s~~Pvi~ 75 (103)
++.=-..++||-..+.+..+. ..++ +.++-+.+. +|+- |.......+..+.++.|||=
T Consensus 58 ~SFe~A~~~LGg~~i~l~~~~-ss~~kgEsl~Dtarvls~y---~D~iviR~~~~~~~~~~a~~~~vPVIN 124 (338)
T PRK02255 58 VSFETAMTQLGGHAQYLAPGQ-IQLGGHESLEDTARVLSRL---VDIIMARVDRHQTVVELAKYATVPVIN 124 (338)
T ss_pred HHHHHHHHHcCCeEEEeCccc-ccCCCCcCHHHHHHHHHHh---CcEEEEecCChHHHHHHHHhCCCCEEE
Confidence 444455688898888887643 2223 444444443 4444 88888899999999999885
No 176
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.05 E-value=2.8e+02 Score=20.35 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=44.9
Q ss_pred HHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCCC---------------------HHHHHHHHHhc---C
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTS---------------------VQTMRHVLNIS---S 70 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s---------------------~~t~~d~l~~s---~ 70 (103)
+.++...+.|.+.+-+.........++-+.+.+.||-+=..|.+ .+.+.++++.+ .
T Consensus 19 ~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 98 (258)
T PRK09997 19 ARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALG 98 (258)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999996533334447888888999998543421 12255565555 6
Q ss_pred CCEEEecCC
Q psy11267 71 APVIFSHSS 79 (103)
Q Consensus 71 ~Pvi~SHs~ 79 (103)
.|.|..+++
T Consensus 99 a~~i~~~~g 107 (258)
T PRK09997 99 NKKINCLVG 107 (258)
T ss_pred CCEEEECCC
Confidence 898877765
No 177
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.
Probab=24.87 E-value=52 Score=25.00 Aligned_cols=25 Identities=4% Similarity=-0.008 Sum_probs=19.7
Q ss_pred CCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 78 SSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 78 s~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
.|..+++.-..+++++++++||++.
T Consensus 18 GN~~~Vv~~~~~l~~~~mq~iA~~~ 42 (297)
T TIGR00654 18 GNPAAVVNFAEILSEEEMQAIANET 42 (297)
T ss_pred CCceEEEcCCCCCCHHHHHHHHHHh
Confidence 4566666666789999999999875
No 178
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=24.60 E-value=1.1e+02 Score=25.52 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=35.3
Q ss_pred HHHHHHHHcCccE--EeeccCCC---------CchH-----HHHHHHHhcCC--eeeccCCCH
Q psy11267 15 AVLRMFYKLGVRY--LTLTHACP---------TPWY-----LVVRECNRLGM--LIDLSHTSV 59 (103)
Q Consensus 15 ~~l~~~y~lGvR~--i~lt~n~~---------n~~~-----~~i~~mn~lGm--iiDlSH~s~ 59 (103)
+.++.+.++|+.. +++.|.+= |+-| ++|.+|.+.|| +|.|-|-.-
T Consensus 73 EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 73 EDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred HHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 6888999999863 67888541 4444 99999999999 899988653
No 179
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=1.4e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCccEEeeccCC-----CCchHHHHHHHHhcC--CeeeccCCCHHHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC-----PTPWYLVVRECNRLG--MLIDLSHTSVQTM 62 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~-----~n~~~~~i~~mn~lG--miiDlSH~s~~t~ 62 (103)
++.++.+.+-.-|.+.++|-. -++..++++...+.| ++||.+|.-.---
T Consensus 152 ~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~ 207 (405)
T COG0520 152 LDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLP 207 (405)
T ss_pred HHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccC
Confidence 566666666678899999854 245668888899999 8899998755433
No 180
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=24.26 E-value=1.6e+02 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHHHcCccEEeeccCCCCchH----------------------HHHHHHHhcCCeeeccCCC
Q psy11267 16 VLRMFYKLGVRYLTLTHACPTPWY----------------------LVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt~n~~n~~~----------------------~~i~~mn~lGmiiDlSH~s 58 (103)
.++.+.+.|.|++-||=....-|+ ++.+.+.+.||-+=+.|..
T Consensus 86 Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 86 WADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH
Confidence 688899999999999965433333 7777888899998887663
No 181
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=24.19 E-value=2.9e+02 Score=21.98 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=41.8
Q ss_pred HHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEE
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIF 75 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~ 75 (103)
+.=-..++||-..+.+.-+. ..++ +.++-+.+..=+|-+-|-...+..+..+.+..|||=
T Consensus 63 SFe~A~~~LGg~~i~l~~~~-ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVIN 128 (334)
T PRK01713 63 AFEVAAYDQGAQVTYIDPNS-SQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFN 128 (334)
T ss_pred HHHHHHHHcCCeEEEcCCcc-ccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEE
Confidence 33344678888888874432 2222 555555555556667799999999999999999984
No 182
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=24.15 E-value=1.4e+02 Score=21.82 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeeec
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLIDL 54 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiDl 54 (103)
......+.++|++..-++--++.++| .++++|++.||-++.
T Consensus 40 ~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~ 81 (284)
T cd01945 40 ANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTSF 81 (284)
T ss_pred HHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCccc
Confidence 44556778899888777777777888 678899999974443
No 183
>PRK06233 hypothetical protein; Provisional
Probab=24.06 E-value=67 Score=25.80 Aligned_cols=16 Identities=44% Similarity=1.005 Sum_probs=14.0
Q ss_pred HHHHHHHcCccEEeec
Q psy11267 16 VLRMFYKLGVRYLTLT 31 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt 31 (103)
.++.||+.|+|++|+-
T Consensus 176 Ei~~L~~aG~~~IQiD 191 (372)
T PRK06233 176 TIQHFYDLGARYIQLD 191 (372)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 6788999999999974
No 184
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=24.02 E-value=1.2e+02 Score=23.58 Aligned_cols=75 Identities=11% Similarity=0.004 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcCC--eeeccCCCH----HHHHHHHHhc--CCCEEE
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLGM--LIDLSHTSV----QTMRHVLNIS--SAPVIF 75 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lGm--iiDlSH~s~----~t~~d~l~~s--~~Pvi~ 75 (103)
+++.++....-+.+.+-++ |.+||-| ++++-+.+.|+ ++|-.+..- .......... ...+|.
T Consensus 153 d~~~l~~~~~~~~~~v~i~-~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~ 231 (383)
T TIGR03540 153 DFDAIPEDIAKKAKLMFIN-YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIE 231 (383)
T ss_pred CHHHHHhhccccceEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEE
Confidence 6777766666688988888 5678888 77777777775 677766411 0111111111 234677
Q ss_pred ecCCcccc-CCCCC
Q psy11267 76 SHSSAFAL-CPSPR 88 (103)
Q Consensus 76 SHs~~ral-~~~~R 88 (103)
.+|-.+.+ ++.-|
T Consensus 232 ~~SfSK~~g~~GlR 245 (383)
T TIGR03540 232 FHSLSKTYNMTGWR 245 (383)
T ss_pred EEecccccCCccce
Confidence 77777777 45544
No 185
>PRK10376 putative oxidoreductase; Provisional
Probab=24.02 E-value=1.2e+02 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=19.2
Q ss_pred cCCcHHHHHHHHHcC-ccEEeeccC
Q psy11267 10 LGNSMAVLRMFYKLG-VRYLTLTHA 33 (103)
Q Consensus 10 l~~~l~~l~~~y~lG-vR~i~lt~n 33 (103)
+..-++.|+.+++.| ||++|++-+
T Consensus 143 ~~~~~~~l~~l~~~Gkir~iGvSn~ 167 (290)
T PRK10376 143 IEEPLTVLAELQRQGLVRHIGLSNV 167 (290)
T ss_pred HHHHHHHHHHHHHCCceeEEEecCC
Confidence 334468899999999 999999854
No 186
>KOG0204|consensus
Probab=23.86 E-value=3.2e+02 Score=25.56 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=54.5
Q ss_pred HHHHHHHcCccEEeeccCC------C--------CchH-------------------HHHHHHHhcCCeeeccCCCHHHH
Q psy11267 16 VLRMFYKLGVRYLTLTHAC------P--------TPWY-------------------LVVRECNRLGMLIDLSHTSVQTM 62 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt~n~------~--------n~~~-------------------~~i~~mn~lGmiiDlSH~s~~t~ 62 (103)
.++.+...|+|-+.++|.. . ++.+ +.|+.|++.|+-|-.---..=.+
T Consensus 597 ~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T 676 (1034)
T KOG0204|consen 597 VIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINT 676 (1034)
T ss_pred HHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH
Confidence 5778889999999999943 1 1111 99999999999988654444334
Q ss_pred HHHHHh-cCCCEEEecCCccccC--CCCCCCCHHHHHHhhhhc
Q psy11267 63 RHVLNI-SSAPVIFSHSSAFALC--PSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 63 ~d~l~~-s~~Pvi~SHs~~ral~--~~~RNl~De~i~~ia~~~ 102 (103)
..|++. .. |.++..=...- ..=|+++||...+|..+|
T Consensus 677 AkAIA~eCG---ILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl 716 (1034)
T KOG0204|consen 677 AKAIARECG---ILTPGGDFLALEGKEFRELSQEERDKIWPKL 716 (1034)
T ss_pred HHHHHHHcc---cccCCCccceecchhhhhcCHHHHHhhhhhh
Confidence 444333 22 23333211111 233799999999998876
No 187
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=23.81 E-value=1.2e+02 Score=26.33 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=40.9
Q ss_pred ccCCcHHHHHHHHHcCccEEeeccCCCCchH--HHHHHHHhcCCeeeccCCC------HHHHHHHHHhcCCCEEEecC
Q psy11267 9 SLGNSMAVLRMFYKLGVRYLTLTHACPTPWY--LVVRECNRLGMLIDLSHTS------VQTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~--~~i~~mn~lGmiiDlSH~s------~~t~~d~l~~s~~Pvi~SHs 78 (103)
.+..+.+.|-.+|...+- ...|| ++|+.|++.|+-||-=|+| +--+.-..+.++.||++.=|
T Consensus 395 tL~T~~~~l~~lY~a~l~--------a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~s 464 (544)
T COG1069 395 TLDTSPESLALLYRALLE--------ATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIPAS 464 (544)
T ss_pred ccCCCcHHHHHHHHHHHH--------HHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEeecc
Confidence 445555655566554432 12344 8999999999999987775 33344455667899887743
No 188
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.79 E-value=1.2e+02 Score=19.21 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+.+|-+.+++++
T Consensus 77 ~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 77 VEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred HHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 55778888889999999998877765
No 189
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=23.74 E-value=41 Score=27.76 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=32.6
Q ss_pred HHHHHHHHHc----CccEEe-e--ccCCC--Cch-----HHHHHHHHhcCCeeeccC
Q psy11267 14 MAVLRMFYKL----GVRYLT-L--THACP--TPW-----YLVVRECNRLGMLIDLSH 56 (103)
Q Consensus 14 l~~l~~~y~l----GvR~i~-l--t~n~~--n~~-----~~~i~~mn~lGmiiDlSH 56 (103)
...++.+.+. ||..+. | +|+.+ .++ .+-+++|.++||++|-.+
T Consensus 274 ~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~ 330 (398)
T PLN02875 274 FGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDD 330 (398)
T ss_pred HHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCC
Confidence 4578888888 999999 3 66531 223 367899999999999776
No 190
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=23.72 E-value=2e+02 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=19.0
Q ss_pred ccCCcHHHHHHHHHcC-ccEEeec
Q psy11267 9 SLGNSMAVLRMFYKLG-VRYLTLT 31 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lG-vR~i~lt 31 (103)
+++.-++.|+.+++.| +|++|++
T Consensus 127 ~~~e~~~aL~~l~~~G~ir~iGvS 150 (317)
T TIGR01293 127 PMEETVRAMTYVINQGMAMYWGTS 150 (317)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEec
Confidence 4445578899999999 9999988
No 191
>PRK06107 aspartate aminotransferase; Provisional
Probab=23.69 E-value=1.8e+02 Score=22.84 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhc-C--CeeeccCCC----HHHHHHHHHh---cCCC
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRL-G--MLIDLSHTS----VQTMRHVLNI---SSAP 72 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~l-G--miiDlSH~s----~~t~~d~l~~---s~~P 72 (103)
-+++.++....-+.+.+-++ |-+||-| ++++.+.+. | +++|-++.. ...+...... ....
T Consensus 154 ~~~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~ 232 (402)
T PRK06107 154 LTPEALEAAITPRTRWLILN-APSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDR 232 (402)
T ss_pred CCHHHHHhhcCcCceEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCC
Confidence 35677777766678888777 4567777 666666665 7 667865431 1111111222 1246
Q ss_pred EEEecCCccccC-CCCCC----CCHHHHHHhhh
Q psy11267 73 VIFSHSSAFALC-PSPRN----VPDPVLKLVFP 100 (103)
Q Consensus 73 vi~SHs~~ral~-~~~RN----l~De~i~~ia~ 100 (103)
+|..+|-.+.+. +.-|- .+++.++.+..
T Consensus 233 vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~ 265 (402)
T PRK06107 233 VLVTNGVSKTYAMTGWRIGYAAGPADLIAAINK 265 (402)
T ss_pred EEEEeccchhhcCcccceeeeecCHHHHHHHHH
Confidence 888888888774 55552 24555555544
No 192
>KOG2492|consensus
Probab=23.64 E-value=2.2e+02 Score=24.38 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.6
Q ss_pred cccccccCCcHHHHHHHHHcCccEEeeccCCCCch
Q psy11267 4 VEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW 38 (103)
Q Consensus 4 ~Eg~~~l~~~l~~l~~~y~lGvR~i~lt~n~~n~~ 38 (103)
=|-+.||++=++.++.+.+.|++-++|--..-|.|
T Consensus 245 reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSy 279 (552)
T KOG2492|consen 245 RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSY 279 (552)
T ss_pred cccCCchHHHHHHHHHHhhcCceeeeeeccccccc
Confidence 45677888778899999999999999977544443
No 193
>PRK08912 hypothetical protein; Provisional
Probab=23.64 E-value=1.4e+02 Score=23.12 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcC--CeeeccCCC----HHHHHHHHHhc--CCCEE
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLG--MLIDLSHTS----VQTMRHVLNIS--SAPVI 74 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lG--miiDlSH~s----~~t~~d~l~~s--~~Pvi 74 (103)
-+++.++....-..|.+-++ |.+||.| ++++-+.+.| +++|-++.. ++.+....... ...+|
T Consensus 147 ~~~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 225 (387)
T PRK08912 147 LPRAALAAAFSPRTKAVLLN-NPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTV 225 (387)
T ss_pred CCHHHHHHHhCccceEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceE
Confidence 35777877776788888888 6788888 5666666666 455655421 00000111111 12366
Q ss_pred EecCCccccC-CCCC
Q psy11267 75 FSHSSAFALC-PSPR 88 (103)
Q Consensus 75 ~SHs~~ral~-~~~R 88 (103)
...|-.+.+. +.-|
T Consensus 226 ~~~S~SK~~g~~GlR 240 (387)
T PRK08912 226 KIGSAGKIFSLTGWK 240 (387)
T ss_pred EEeechhhccCcCce
Confidence 6677666664 4444
No 194
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.62 E-value=4.1e+02 Score=21.72 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=42.2
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCc-----------hH---HHHHHHHhcCC---eeec----cCCCHHHHHHHHHhc
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTP-----------WY---LVVRECNRLGM---LIDL----SHTSVQTMRHVLNIS 69 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~-----------~~---~~i~~mn~lGm---iiDl----SH~s~~t~~d~l~~s 69 (103)
+.+.++.+.+.|+..+++--..-++ +. +.++.+.+.|+ -+|+ ..-+.+.+.+.++..
T Consensus 151 t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 228 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKV 228 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999988754332 11 78888888886 3454 677888888877775
No 195
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.49 E-value=1.6e+02 Score=22.51 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=26.8
Q ss_pred hcCCeeeccCCC----HHHHHHHHHhcCCCEEEecCCccc
Q psy11267 47 RLGMLIDLSHTS----VQTMRHVLNISSAPVIFSHSSAFA 82 (103)
Q Consensus 47 ~lGmiiDlSH~s----~~t~~d~l~~s~~Pvi~SHs~~ra 82 (103)
-..|+=|+|=.. ...+.+++..++.|+|+.|++-+.
T Consensus 92 G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 92 GKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred CCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 466888999654 345567778889999999997544
No 196
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.48 E-value=3.3e+02 Score=21.29 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCccEEeeccCCCC-----chHHHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPT-----PWYLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIF 75 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n-----~~~~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~ 75 (103)
++.=-...+||-..+.+..+..+ ...+.++-+....=+|=+=|..+.+..+..+.++.|||=
T Consensus 59 ~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 125 (304)
T PRK00779 59 VSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVIN 125 (304)
T ss_pred HHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEe
Confidence 44445668889888888654321 122455544444444455689999999999999999883
No 197
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.45 E-value=1.2e+02 Score=25.12 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=35.9
Q ss_pred HHHHHHHHcCccE--EeeccCCC--------CchH-----HHHHHHHhcCC--eeeccCCCHH
Q psy11267 15 AVLRMFYKLGVRY--LTLTHACP--------TPWY-----LVVRECNRLGM--LIDLSHTSVQ 60 (103)
Q Consensus 15 ~~l~~~y~lGvR~--i~lt~n~~--------n~~~-----~~i~~mn~lGm--iiDlSH~s~~ 60 (103)
+.++.+.++|+.. +++.|..= |+-| ++|.+|.+.|| +|-|-|-.-.
T Consensus 58 eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 58 EDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 5788899999853 67888542 4444 99999999999 9999997543
No 198
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=23.39 E-value=3.3e+02 Score=21.81 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSP 87 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~ 87 (103)
++.=-..++||-..+.+..+. ..++ +.++-+.+..=+|=+=|..+....+..+.+..|||=- -+-..||
T Consensus 61 ~SFE~A~~~LGg~~i~l~~~~-s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa----~~~~~HP 135 (334)
T PRK12562 61 CSFEVAAYDQGARVTYLGPSG-SQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWNG----LTNEFHP 135 (334)
T ss_pred HHHHHHHHHcCCeEEEeCCcc-ccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHHhCCCCEEEC----CCCCCCh
Confidence 334445688998888885432 2333 5555555555555556889999999999999999833 2234666
Q ss_pred C
Q psy11267 88 R 88 (103)
Q Consensus 88 R 88 (103)
-
T Consensus 136 t 136 (334)
T PRK12562 136 T 136 (334)
T ss_pred H
Confidence 3
No 199
>PRK06348 aspartate aminotransferase; Provisional
Probab=23.37 E-value=1.4e+02 Score=23.22 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcCC--eeeccCCCHH---HHHHHHHhc--CCCEEE
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLGM--LIDLSHTSVQ---TMRHVLNIS--SAPVIF 75 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lGm--iiDlSH~s~~---t~~d~l~~s--~~Pvi~ 75 (103)
-+++.|+...+-..|.+-++ +.+||-| ++++-+.+.|+ ++|=.+..-. ......... .-.+|.
T Consensus 150 ~d~~~l~~~~~~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 228 (384)
T PRK06348 150 INVKKLEALITSKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTIT 228 (384)
T ss_pred CCHHHHHHhhCcCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEE
Confidence 46788887776678888777 7788887 66666677675 5565543210 111111222 234788
Q ss_pred ecCCccccC-CCCC----CCCHHHHHHhh
Q psy11267 76 SHSSAFALC-PSPR----NVPDPVLKLVF 99 (103)
Q Consensus 76 SHs~~ral~-~~~R----Nl~De~i~~ia 99 (103)
.+|-.+++. +.-| -.+++.++.+.
T Consensus 229 ~~SfSK~~~l~GlRiG~~v~~~~~~~~~~ 257 (384)
T PRK06348 229 FGSFSKDFAMTGWRIGYVIAPDYIIETAK 257 (384)
T ss_pred EecchhccCCccccceeeecCHHHHHHHH
Confidence 888888875 6555 22455554443
No 200
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=23.26 E-value=1e+02 Score=24.78 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCeeeccCC
Q psy11267 40 LVVRECNRLGMLIDLSHT 57 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~ 57 (103)
+++++|.+.|+..|.-..
T Consensus 114 ~vl~~l~~~G~~pd~VQV 131 (332)
T PF07745_consen 114 DVLQALKAAGVTPDMVQV 131 (332)
T ss_dssp HHHHHHHHTT--ESEEEE
T ss_pred HHHHHHHHCCCCccEEEe
Confidence 777888887777776443
No 201
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=23.26 E-value=48 Score=19.39 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=12.6
Q ss_pred CCCHHHHHHhhhhcC
Q psy11267 89 NVPDPVLKLVFPYLT 103 (103)
Q Consensus 89 Nl~De~i~~ia~~~~ 103 (103)
+.|+||.++|++.+|
T Consensus 11 Grs~EqK~~L~~~it 25 (60)
T PRK02289 11 GRSQEQKNALAREVT 25 (60)
T ss_pred CCCHHHHHHHHHHHH
Confidence 569999999998764
No 202
>PLN02323 probable fructokinase
Probab=23.16 E-value=1.6e+02 Score=22.30 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=32.7
Q ss_pred cCCc-HHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeee
Q psy11267 10 LGNS-MAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLID 53 (103)
Q Consensus 10 l~~~-l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiD 53 (103)
.|+. ......+.++|++..-++.-++..+| .+.++|.+.||-.+
T Consensus 42 ~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~ 87 (330)
T PLN02323 42 PGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVNNE 87 (330)
T ss_pred CCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCCCc
Confidence 3443 44556677899998888888878898 66778899987544
No 203
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=23.16 E-value=1.9e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHHcCccEEeeccCCCC-------chHHHHHHHHhcCCeeec
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPT-------PWYLVVRECNRLGMLIDL 54 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n-------~~~~~i~~mn~lGmiiDl 54 (103)
+.++...+.|+++|.+.|...+ .+.+++++..+.|+++=.
T Consensus 97 ~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~ 143 (267)
T cd07476 97 RAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVA 143 (267)
T ss_pred HHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 3666677899999999996432 122778888888988844
No 204
>smart00642 Aamy Alpha-amylase domain.
Probab=23.13 E-value=1.3e+02 Score=21.20 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCccEEeecc--CCC------------------CchH------HHHHHHHhcCCe--eec--cCCCH
Q psy11267 14 MAVLRMFYKLGVRYLTLTH--ACP------------------TPWY------LVVRECNRLGML--IDL--SHTSV 59 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~--n~~------------------n~~~------~~i~~mn~lGmi--iDl--SH~s~ 59 (103)
.+.|+.+.++|+..+.|+= ... ..+| ++|+++.+.||- +|+ .|++.
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 5678889999999886542 111 1233 999999998874 453 57776
No 205
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.12 E-value=1.9e+02 Score=20.79 Aligned_cols=41 Identities=5% Similarity=-0.043 Sum_probs=28.2
Q ss_pred HHHHHHHHcCccEEeeccCCCCc-------hHHHHHHHHh-cCCeeecc
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTP-------WYLVVRECNR-LGMLIDLS 55 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~-------~~~~i~~mn~-lGmiiDlS 55 (103)
..++...+.|+|++.+.|..... +-++++++.+ .|++|=.|
T Consensus 88 ~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~a 136 (242)
T cd07498 88 QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFA 136 (242)
T ss_pred HHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEe
Confidence 34556677899999999965433 1166777777 78877555
No 206
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=23.10 E-value=3.1e+02 Score=22.94 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVI 74 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi 74 (103)
++.=-..++||-..+.+.......++ +.++-|.+..=+|=+=|.+.....+..+.++.|||
T Consensus 142 ~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVI 208 (429)
T PRK11891 142 VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVI 208 (429)
T ss_pred HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 44445568889888888642223333 44444444433444558888899999999999998
No 207
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.05 E-value=56 Score=24.10 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHHHHhhhhc
Q psy11267 84 CPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 84 ~~~~RNl~De~i~~ia~~~ 102 (103)
..+||.++.++.++|.+.+
T Consensus 31 ~~SpR~V~~~~a~~i~~~~ 49 (207)
T PRK13958 31 EKSKRHQTITQIKKLASAV 49 (207)
T ss_pred CCCcccCCHHHHHHHHHhC
Confidence 4588888888888887654
No 208
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=23.00 E-value=53 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCeeeccC
Q psy11267 40 LVVRECNRLGMLIDLSH 56 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH 56 (103)
+-+++|.++||++|-..
T Consensus 284 ~~~~~l~~~~iL~D~d~ 300 (353)
T TIGR01263 284 EDLDTLRELNILIDGDE 300 (353)
T ss_pred chHHHHHHCCEEEecCC
Confidence 56888999999999764
No 209
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=23.00 E-value=1.8e+02 Score=22.14 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHcCccEEeeccCCCC-----chHHHHHHHHhcCCeeeccCCC
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPT-----PWYLVVRECNRLGMLIDLSHTS 58 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n-----~~~~~i~~mn~lGmiiDlSH~s 58 (103)
..++...+.|++++-+.|.... .+.+++++..+.|+++=.|=-.
T Consensus 132 ~Ai~~a~~~g~~IiN~S~G~~~~~~~~~~~~ai~~a~~~gilvV~AAGN 180 (291)
T cd07483 132 NAIRYAVDNGAKVINMSFGKSFSPNKEWVDDAIKYAESKGVLIVHAAGN 180 (291)
T ss_pred HHHHHHHHCCCcEEEeCCCCCCCCccHHHHHHHHHHHhCCeEEEEeCCC
Confidence 4566677899999999986321 1227888888888888666433
No 210
>PRK13697 cytochrome c6; Provisional
Probab=22.99 E-value=54 Score=21.10 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.-.+||++++.|++++
T Consensus 87 ~~~ls~~di~~l~~Yi 102 (111)
T PRK13697 87 KDRLSPDQIEDVAAYV 102 (111)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3469999999999986
No 211
>TIGR03356 BGL beta-galactosidase.
Probab=22.99 E-value=1.1e+02 Score=25.05 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHHHHHHHcCccE--EeeccCCC--------CchH-----HHHHHHHhcCC--eeeccCCC
Q psy11267 15 AVLRMFYKLGVRY--LTLTHACP--------TPWY-----LVVRECNRLGM--LIDLSHTS 58 (103)
Q Consensus 15 ~~l~~~y~lGvR~--i~lt~n~~--------n~~~-----~~i~~mn~lGm--iiDlSH~s 58 (103)
+.++.+.++|+.. +++.|..- |.-+ ++|.+|.+.|| +|++.|-.
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 5788889999765 45566432 2212 99999999998 89998875
No 212
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.93 E-value=58 Score=16.96 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.9
Q ss_pred CcHHHHHHHHHcCc
Q psy11267 12 NSMAVLRMFYKLGV 25 (103)
Q Consensus 12 ~~l~~l~~~y~lGv 25 (103)
..+..|+.+|+.|+
T Consensus 3 ~~L~~L~~l~~~G~ 16 (31)
T PF09851_consen 3 DRLEKLKELYDKGE 16 (31)
T ss_pred HHHHHHHHHHHcCC
Confidence 35677788888775
No 213
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.88 E-value=1.1e+02 Score=24.05 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=34.8
Q ss_pred HHHHHHHhcC--CeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLG--MLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lG--miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
++++.+.+.| +++=+.|.+.++.. +.|+-.|.......-..||.+|.|+|+.+.+.
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~------~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~ 138 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYH------PLCVAPSAIRAPINPFTPRELSEEEIEQTIED 138 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCC------CCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 7777777766 56688998875422 23332232222222246899999999998764
No 214
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=22.87 E-value=1.5e+02 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=27.7
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcCCee
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLGMLI 52 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lGmii 52 (103)
|++.++.....+.|.+-++ |.+||-| ++++-+.+.|++|
T Consensus 154 d~~~l~~~~~~~~k~i~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~i 201 (393)
T TIGR03538 154 DFDAVPESVWRRCQLLFVC-SPGNPTGAVLSLDTLKKLIELADQYGFII 201 (393)
T ss_pred CHHHHHHHHhhcceEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCEEE
Confidence 5666766555588988877 7789988 6666666667544
No 215
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.86 E-value=96 Score=22.85 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=26.7
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeee
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLID 53 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiD 53 (103)
+-..-+.|..+|.|.+|+|- +-.-|...||+=|
T Consensus 139 S~~lskdLKkrGfkFvGpt~--------~ysfmqA~G~vnd 171 (179)
T TIGR00624 139 SKAMSKELKKRGFRFVGPTI--------CYALMQATGMVDD 171 (179)
T ss_pred HHHHHHHHHHcCCeecChHH--------HHHHHHHHCCccc
Confidence 34567888999999999998 6677888898855
No 216
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=22.78 E-value=1.8e+02 Score=22.39 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCccEEeeccCC----CCchHHHHHHHHhcC-CeeeccCCCHHHHHHHHHhcCCCEEEecCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC----PTPWYLVVRECNRLG-MLIDLSHTSVQTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~----~n~~~~~i~~mn~lG-miiDlSH~s~~t~~d~l~~s~~Pvi~SHs~ 79 (103)
++....+...|.|.+-.+=-. ...-++++++++.+- .++|+-=+.-.++..++..+..||+.|-+.
T Consensus 39 ~eia~~lr~rgar~vYiADLdaI~g~g~n~d~i~~l~~~~~~ivD~Gv~dL~s~~~~l~~~~~~vv~TEt~ 109 (229)
T COG1411 39 LEIAEALRERGARFVYIADLDAILGGGDNADTIRELSSLEKVIVDVGVRDLESHAHRLIPAETAVVGTETL 109 (229)
T ss_pred HHHHHHHhhccCceEEeeehHHHhcCCCcHHHHHHHHhhhhheeecccccccCHHHhcCCCcceeeccchh
Confidence 456777888899988877531 222338899998766 999998888888999999999999988764
No 217
>KOG0208|consensus
Probab=22.64 E-value=1.4e+02 Score=28.00 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCccEEeeccC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHA 33 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n 33 (103)
.+.++.|-..|.|.|.+++.
T Consensus 653 ~evl~~Yt~~GfRVIAlA~K 672 (1140)
T KOG0208|consen 653 QEVLKEYTHQGFRVIALASK 672 (1140)
T ss_pred HHHHHHHHhCCeEEEEEecC
Confidence 45889999999999999995
No 218
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.64 E-value=75 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=14.3
Q ss_pred HHHHHHHcCccEEeec
Q psy11267 16 VLRMFYKLGVRYLTLT 31 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt 31 (103)
.++.||+.|+|++|+-
T Consensus 161 Ei~~L~~aG~~~IQiD 176 (339)
T PRK09121 161 EAKELEAAGVDIIQFD 176 (339)
T ss_pred HHHHHHHCCCCEEEec
Confidence 6788999999999985
No 219
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=22.64 E-value=2.2e+02 Score=21.77 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCccEEeeccCC---CCchH--------HHHHHHHhc----CCeeeccCCCHHHHHHHHHhcCCCEEEecC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC---PTPWY--------LVVRECNRL----GMLIDLSHTSVQTMRHVLNISSAPVIFSHS 78 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~---~n~~~--------~~i~~mn~l----GmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs 78 (103)
-..++.|..+|+|.+-+|-.. +..|. +.|....+. --.+|+++.-++...++.+....+ -|.
T Consensus 72 ~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~~~pl~g~~~~d~~~~yd~~Lr~~a~~~~~~---~~~ 148 (237)
T TIGR01698 72 VHPVRTARATGAETLILTNAAGGLRQDWGPGTPVLISDHINLTARSPLIGPRFVDLTDAYSPRLRELAERVDPP---LAE 148 (237)
T ss_pred HHHHHHHHHcCCCEEEEEcccccCCCCCCCCCEEeechhcccCCCCCCCCCccCCCCcccCHHHHHHHHHcCCC---ccC
Confidence 458999999999999888742 11222 555443221 256788888888888887766655 468
Q ss_pred CccccCCCCCCCCHHHHHHhhh
Q psy11267 79 SAFALCPSPRNVPDPVLKLVFP 100 (103)
Q Consensus 79 ~~ral~~~~RNl~De~i~~ia~ 100 (103)
+.+....-||-=|-.++|.++.
T Consensus 149 GvY~~~~GP~fET~AEir~~r~ 170 (237)
T TIGR01698 149 GVYAWFPGPHYETPAEIRMAGI 170 (237)
T ss_pred EEEEEecCCCcCCHHHHHHHHH
Confidence 8999999999999999998764
No 220
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.62 E-value=1.1e+02 Score=23.28 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.|.+|.+..+|++
T Consensus 194 i~~a~~ak~~ga~vIaiT~~~~spla 219 (281)
T COG1737 194 VEAAELAKERGAKVIAITDSADSPLA 219 (281)
T ss_pred HHHHHHHHHCCCcEEEEcCCCCCchh
Confidence 56788889999999999999888877
No 221
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=22.58 E-value=63 Score=23.43 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCccccCCCCCCCCHHHHHHhhhh
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVFPY 101 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral~~~~RNl~De~i~~ia~~ 101 (103)
..=+.+.++|+-+|+-|..+ +.+++++|+ .|+..-++++..++|.++
T Consensus 34 ~~y~al~~~gi~vDvv~~~~-------dL~~Ykllv--------~P~~~~l~~~~~~~L~~y 80 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDD-------DLSGYKLLV--------LPSLYILSPEFAERLRAY 80 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS---------TT-SEEE--------ES--SC--HHH---HHHH
T ss_pred HHHHHHHHcCCceEEecCcC-------CcccCcEEE--------EeeEEEEChHHHHHHHHH
Confidence 44556678999999999875 566777553 355667788886666654
No 222
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.54 E-value=74 Score=25.54 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=14.1
Q ss_pred HHHHHHHcCccEEeec
Q psy11267 16 VLRMFYKLGVRYLTLT 31 (103)
Q Consensus 16 ~l~~~y~lGvR~i~lt 31 (103)
.++.||+.|+|+||+-
T Consensus 175 Ei~~L~~aG~~~IQiD 190 (368)
T PRK06520 175 AIKAFYDAGCRYLQLD 190 (368)
T ss_pred HHHHHHHCCCCEEEec
Confidence 6788999999999974
No 223
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.41 E-value=3.2e+02 Score=20.06 Aligned_cols=59 Identities=5% Similarity=0.052 Sum_probs=37.7
Q ss_pred HHcCccEEeec-cCCCCchH-----HHHHHHHhcCC--eeeccCCCHHHHHHHHHhcCCCEEEecCC
Q psy11267 21 YKLGVRYLTLT-HACPTPWY-----LVVRECNRLGM--LIDLSHTSVQTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 21 y~lGvR~i~lt-~n~~n~~~-----~~i~~mn~lGm--iiDlSH~s~~t~~d~l~~s~~Pvi~SHs~ 79 (103)
.++|+..+++- .+...... ++++.|.+.|+ ++-=+..+.+......+.+..|++...+-
T Consensus 165 ~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 165 KRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 44566666655 22222222 88888888887 77778888888888888889998766554
No 224
>PLN00196 alpha-amylase; Provisional
Probab=22.39 E-value=1.6e+02 Score=24.23 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCccEEeec--cC--------------CC-CchH------HHHHHHHhcCC--eee--ccCCCHH
Q psy11267 14 MAVLRMFYKLGVRYLTLT--HA--------------CP-TPWY------LVVRECNRLGM--LID--LSHTSVQ 60 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt--~n--------------~~-n~~~------~~i~~mn~lGm--iiD--lSH~s~~ 60 (103)
.+.|+.+.++||-.|-|+ +. -+ +.|| ++|+++.+.|| ++| +.|++..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~ 120 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAE 120 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccc
Confidence 578999999999988765 11 12 2567 99999999887 456 4788853
No 225
>COG3722 MtlR Transcriptional regulator [Transcription]
Probab=22.37 E-value=69 Score=23.64 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=16.7
Q ss_pred ccccccCCcHH-HHHHHHHcCcc
Q psy11267 5 EGGHSLGNSMA-VLRMFYKLGVR 26 (103)
Q Consensus 5 Eg~~~l~~~l~-~l~~~y~lGvR 26 (103)
-|..|++ |++ +|+.+|.+||=
T Consensus 61 ~~sGPL~-DlsVrLkliygLGvi 82 (174)
T COG3722 61 AGSGPLG-DLSVRLKLIYGLGVI 82 (174)
T ss_pred cCCCCcc-hHHHHHHHHHHhccc
Confidence 4677887 565 99999999984
No 226
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=22.33 E-value=1.6e+02 Score=21.83 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=32.0
Q ss_pred cCCcHHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeee
Q psy11267 10 LGNSMAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLID 53 (103)
Q Consensus 10 l~~~l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiD 53 (103)
.|+.......+.++|++..-++.-++..+| .+.+++++.||-.+
T Consensus 39 ~GG~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gI~~~ 83 (304)
T cd01172 39 LGGAANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDTD 83 (304)
T ss_pred CcHHHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCCCCcc
Confidence 444455667788899998888887878888 45567788886543
No 227
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=22.31 E-value=1.8e+02 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCee
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLI 52 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmii 52 (103)
......+.++|++..-++.-++..+++.++++++.||-.
T Consensus 43 ~Nva~~la~lG~~~~~i~~vG~D~~~~~~~~l~~~gv~~ 81 (312)
T PRK09513 43 INVAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIAN 81 (312)
T ss_pred HHHHHHHHHcCCCeEEEEEecCccHHHHHHHHHHcCCCc
Confidence 344556777898888888777778888888899988843
No 228
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=22.29 E-value=2.1e+02 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=22.6
Q ss_pred HHHHHHHhcC----CeeeccCC------CHHHHHHHHHhcCCCEEEe
Q psy11267 40 LVVRECNRLG----MLIDLSHT------SVQTMRHVLNISSAPVIFS 76 (103)
Q Consensus 40 ~~i~~mn~lG----miiDlSH~------s~~t~~d~l~~s~~Pvi~S 76 (103)
++++++++.| ++-|++.- .-....++.+.++.|||++
T Consensus 150 ~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvias 196 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVAS 196 (241)
T ss_pred HHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEe
Confidence 6777777776 44455432 2344566666677887775
No 229
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.26 E-value=1.2e+02 Score=21.89 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchHH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWYL 40 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~~ 40 (103)
++.++...+.|++.+++|-+.++++++
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 457888899999999999988777664
No 230
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic. This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.
Probab=22.25 E-value=55 Score=22.73 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
.-.|+|++|++|++||
T Consensus 103 ~~~LsdeeI~aLaaYI 118 (133)
T TIGR03872 103 YGNLTLDEMLQIMAWI 118 (133)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 3469999999999987
No 231
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=22.22 E-value=3.4e+02 Score=21.25 Aligned_cols=61 Identities=20% Similarity=0.049 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEE
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIF 75 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~ 75 (103)
++.=-..++||-..+.+..+. ...+ +.++-+.+..=+|=+=|-......+..+.++.|||=
T Consensus 54 ~SFE~A~~~LGg~~i~l~~~~-ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 120 (302)
T PRK14805 54 VSFDIGINKLGGHCLYLDQQN-GALGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVIN 120 (302)
T ss_pred HHHHHHHHHcCCcEEECCCCc-CcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEE
Confidence 444456788999888887532 2233 444444444333334478888999999999999884
No 232
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.19 E-value=2.9e+02 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|...+++|-|.+++++
T Consensus 135 i~al~~Ak~~Ga~~I~It~~~~s~L~ 160 (257)
T cd05007 135 LGALRYARARGALTIGIACNPGSPLL 160 (257)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhH
Confidence 56788888999999999988655443
No 233
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=22.17 E-value=2.1e+02 Score=21.22 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHHcCccEEeeccCCC-----CchHHHHHHHHhcCCeeecc
Q psy11267 15 AVLRMFYKLGVRYLTLTHACP-----TPWYLVVRECNRLGMLIDLS 55 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~-----n~~~~~i~~mn~lGmiiDlS 55 (103)
+.++...+.|++.+.+.|... +.+.++++++.+.|+++=.|
T Consensus 110 ~ai~~a~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~gil~V~a 155 (295)
T cd07474 110 AAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINNAVKAGVVVVAA 155 (295)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHhcCCEEEEE
Confidence 456677788999999999532 33348889999999876444
No 234
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=22.15 E-value=1.3e+02 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=24.8
Q ss_pred cccccCCcHHHHHHHHHcCccEEeeccCC
Q psy11267 6 GGHSLGNSMAVLRMFYKLGVRYLTLTHAC 34 (103)
Q Consensus 6 g~~~l~~~l~~l~~~y~lGvR~i~lt~n~ 34 (103)
..-.+|++...++.....|++.+++.|..
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~ 188 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLLTYGY 188 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEEccCC
Confidence 34468899999999999999999999864
No 235
>KOG3349|consensus
Probab=22.08 E-value=2.7e+02 Score=20.56 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH----HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEEEecCCcccc
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY----LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFAL 83 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~----~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~ral 83 (103)
.+.++.+...|+-.+-+-+...+++. +.++ ..-|+-||.=-.++.-..|+-+ +-+|+||+++-+.
T Consensus 25 ~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~--k~~gl~id~y~f~psl~e~I~~---AdlVIsHAGaGS~ 93 (170)
T KOG3349|consen 25 EEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR--KNGGLTIDGYDFSPSLTEDIRS---ADLVISHAGAGSC 93 (170)
T ss_pred HHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc--ccCCeEEEEEecCccHHHHHhh---ccEEEecCCcchH
Confidence 46788999999998888887665555 3333 2345666655555543333322 4456666665554
No 236
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.08 E-value=55 Score=20.66 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=11.7
Q ss_pred CCCCHHHHHHhhhhc
Q psy11267 88 RNVPDPVLKLVFPYL 102 (103)
Q Consensus 88 RNl~De~i~~ia~~~ 102 (103)
-.+||+|+||+-+..
T Consensus 52 D~lTpDQirAlHrlv 66 (70)
T PHA02902 52 DSLTPDQIKALHRLV 66 (70)
T ss_pred ccCCHHHHHHHHHHH
Confidence 468999999986654
No 237
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=22.06 E-value=1.7e+02 Score=22.08 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHcCccEEeeccCCCCchH---------HHHHHHHhcC--CeeeccCCCHH---HHHHHHHhcCCCEEEec
Q psy11267 12 NSMAVLRMFYKLGVRYLTLTHACPTPWY---------LVVRECNRLG--MLIDLSHTSVQ---TMRHVLNISSAPVIFSH 77 (103)
Q Consensus 12 ~~l~~l~~~y~lGvR~i~lt~n~~n~~~---------~~i~~mn~lG--miiDlSH~s~~---t~~d~l~~s~~Pvi~SH 77 (103)
-|++.++....-+.|.+-+++ -+|+.| ++++... .| +++|-+|..-. ...+.++.. ..+|...
T Consensus 130 ~d~~~l~~~~~~~~~~v~l~~-p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~i~~~ 206 (346)
T TIGR01141 130 LDLEDILVAIDDKPKLVFLCS-PNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLPLLAEY-PNLIVLR 206 (346)
T ss_pred CCHHHHHHhcCCCCCEEEEeC-CCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHHHHhhC-CCEEEEe
Confidence 367788777667888888884 467777 3333331 14 57788876211 223333322 2467777
Q ss_pred CCcccc-CCCCC----CCCHHHHHHhh
Q psy11267 78 SSAFAL-CPSPR----NVPDPVLKLVF 99 (103)
Q Consensus 78 s~~ral-~~~~R----Nl~De~i~~ia 99 (103)
|-.+.+ ++..| -.+++.++.+.
T Consensus 207 S~sK~~g~~G~r~G~~~~~~~~~~~~~ 233 (346)
T TIGR01141 207 TLSKAFGLAGLRIGYAIANAEIIDALN 233 (346)
T ss_pred hhhHhhhchhhhceeeecCHHHHHHHH
Confidence 766666 34444 13455555443
No 238
>PRK12313 glycogen branching enzyme; Provisional
Probab=22.06 E-value=1.8e+02 Score=25.03 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHH-HHHHHHcCccEEeecc--C--CCCchH--------------------HHHHHHHhcCCe--ee--ccCCCHH
Q psy11267 14 MAV-LRMFYKLGVRYLTLTH--A--CPTPWY--------------------LVVRECNRLGML--ID--LSHTSVQ 60 (103)
Q Consensus 14 l~~-l~~~y~lGvR~i~lt~--n--~~n~~~--------------------~~i~~mn~lGmi--iD--lSH~s~~ 60 (103)
.+. |+.+.+|||-.|.|.= . ..+.|| ++|+++.+.||- +| ..|++..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~ 248 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKD 248 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 345 4999999999886542 1 111222 999999998764 45 3488754
No 239
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=22.03 E-value=1.2e+02 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred ccCCcHHHHHHHHHcCccEEeeccCCC
Q psy11267 9 SLGNSMAVLRMFYKLGVRYLTLTHACP 35 (103)
Q Consensus 9 ~l~~~l~~l~~~y~lGvR~i~lt~n~~ 35 (103)
.+|+++..+....+.|+|.+...|..+
T Consensus 189 ~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 189 FYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred EEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 478899999999999999999999643
No 240
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=22.03 E-value=56 Score=22.76 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHhhhhc
Q psy11267 87 PRNVPDPVLKLVFPYL 102 (103)
Q Consensus 87 ~RNl~De~i~~ia~~~ 102 (103)
-.+|+|+.|+.|++++
T Consensus 82 a~~LsD~Di~~lAa~~ 97 (121)
T COG2863 82 ASGLSDEDIADLAAYY 97 (121)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4689999999999875
No 241
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=21.87 E-value=1.4e+02 Score=21.41 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=37.7
Q ss_pred HcCccEEeeccCCCCchHHHHHHHHh-----cCCeee---ccCCCHHHHHHHHHhcCCCEEEec
Q psy11267 22 KLGVRYLTLTHACPTPWYLVVRECNR-----LGMLID---LSHTSVQTMRHVLNISSAPVIFSH 77 (103)
Q Consensus 22 ~lGvR~i~lt~n~~n~~~~~i~~mn~-----lGmiiD---lSH~s~~t~~d~l~~s~~Pvi~SH 77 (103)
++|+ .+.+...|.=|++|..+.+ -|++|+ .+|.|. +..||++....|+|=-|
T Consensus 41 ~~g~---~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSi-Al~DAl~~~~~P~VEVH 100 (146)
T PRK13015 41 ALGL---EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSV-AIRDALAALELPVIEVH 100 (146)
T ss_pred HcCC---EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHH-HHHHHHHcCCCCEEEEE
Confidence 4565 5666666777766666644 367777 468887 78999999999998655
No 242
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.25 E-value=2.3e+02 Score=21.51 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCccEEeeccCC
Q psy11267 14 MAVLRMFYKLGVRYLTLTHAC 34 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~ 34 (103)
+...+.+.+-|++.+=+||+.
T Consensus 28 ~~~a~Ali~gGi~~IEITl~s 48 (211)
T COG0800 28 LPLAKALIEGGIPAIEITLRT 48 (211)
T ss_pred HHHHHHHHHcCCCeEEEecCC
Confidence 557788999999999999975
No 243
>PRK10481 hypothetical protein; Provisional
Probab=21.21 E-value=2.6e+02 Score=21.24 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=41.8
Q ss_pred HHHHHHHHcCccEEeeccCCCCchH-------HHHHHHHh---cCCeeeccCCCHHHHHHHHHhcCCCEEEecCCcc
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWY-------LVVRECNR---LGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAF 81 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~-------~~i~~mn~---lGmiiDlSH~s~~t~~d~l~~s~~Pvi~SHs~~r 81 (103)
...+.|..+|+... ....+++. +..++|.+ --+++|+.=++-+....+-+...+|||.+.+.+-
T Consensus 144 ~~~~kw~~~G~~v~---~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 144 QQAQKWQVLQKPPV---FALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred HHHHHHHhcCCcee---EeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHH
Confidence 35677888886644 22222221 56666654 3479999999985555555667999999887643
No 244
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=45 Score=25.53 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCeeeccCCCHHH
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQT 61 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t 61 (103)
.+.+.|-+.|+.||+-|.++..
T Consensus 127 rlak~lkknnVAidii~fGE~~ 148 (243)
T COG5148 127 RLAKQLKKNNVAIDIIFFGEAA 148 (243)
T ss_pred HHHHHHHhcCeeEEEEehhhhh
Confidence 7888999999999999999876
No 245
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=21.02 E-value=1.6e+02 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=23.8
Q ss_pred cHHHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcC
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLG 49 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lG 49 (103)
--+.++.+++.|+|.+...+-.-+.-...-+|+.+.|
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 3468899999999998877643222224455555544
No 246
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.91 E-value=1.8e+02 Score=21.00 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHHHHHHc----CccEEeeccCCCC-------chHHHHHHHHhcCCee
Q psy11267 14 MAVLRMFYKL----GVRYLTLTHACPT-------PWYLVVRECNRLGMLI 52 (103)
Q Consensus 14 l~~l~~~y~l----GvR~i~lt~n~~n-------~~~~~i~~mn~lGmii 52 (103)
++.++...+. |++.+.+.|.... .+.+.++++.+.|+++
T Consensus 92 ~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilv 141 (264)
T cd07487 92 IAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVV 141 (264)
T ss_pred HHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEE
Confidence 3456666676 9999999997543 3448999999999987
No 247
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.83 E-value=2.7e+02 Score=22.02 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeeeccCCCHHHHHHHHHhc---CCCEEEecCCcc
Q psy11267 40 LVVRECNRLGMLIDLSHTSVQTMRHVLNIS---SAPVIFSHSSAF 81 (103)
Q Consensus 40 ~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s---~~Pvi~SHs~~r 81 (103)
+.++++.+.|+.+|+-=-..+--..+-... +.++|..|.+.-
T Consensus 128 ~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~~~Pd~~~VldH~G~p 172 (279)
T COG3618 128 ANVERLAKLGLHFDLQVDPHQLPDLIPLALKAPDVNFVLDHCGRP 172 (279)
T ss_pred HHHHHHHhcCCeEEEEeChhhhHHHHHHHhhCCCCCEEeccCCCC
Confidence 999999999999999655554433333333 466999999865
No 248
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=20.74 E-value=4e+02 Score=21.32 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=39.5
Q ss_pred cHHHHHHHHHcCccEEe-eccCCCCchH------HHHHHHHhcCCeeeccCCCHHHHHHHHHhcCCCEE
Q psy11267 13 SMAVLRMFYKLGVRYLT-LTHACPTPWY------LVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVI 74 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~-lt~n~~n~~~------~~i~~mn~lGmiiDlSH~s~~t~~d~l~~s~~Pvi 74 (103)
.++.=-..++||-..+. +..+. ..++ +.++-+.+..=+|=+=|-......++.+.++.|||
T Consensus 59 R~SFe~A~~~LGg~~i~~~~~~~-s~~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVI 126 (338)
T PRK08192 59 RVSFGCAFNLLGGHVRETTGMAS-SSLSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVI 126 (338)
T ss_pred HHHHHHHHHHcCCcEEeecCccc-ccCCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 34444566888888775 34332 2333 44444444444444558899999999999999988
No 249
>PRK11142 ribokinase; Provisional
Probab=20.72 E-value=2e+02 Score=21.35 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH-HHHHHHHhcCCeee
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY-LVVRECNRLGMLID 53 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~-~~i~~mn~lGmiiD 53 (103)
......+.++|.+..-++.-++.++| .+.++|++.||-++
T Consensus 43 ~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 83 (306)
T PRK11142 43 ANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGIDTA 83 (306)
T ss_pred HHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCChh
Confidence 44567788899888777777777888 77788899997443
No 250
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.71 E-value=1.5e+02 Score=20.70 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCccEEeeccCCCCchH
Q psy11267 14 MAVLRMFYKLGVRYLTLTHACPTPWY 39 (103)
Q Consensus 14 l~~l~~~y~lGvR~i~lt~n~~n~~~ 39 (103)
++.++...+.|++.+++|-+.+++++
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchH
Confidence 56788889999999999998888877
No 251
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.64 E-value=1.4e+02 Score=21.48 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCe-----------------------eeccCCCHHHHHHHHHhcCCCEEEecCC
Q psy11267 40 LVVRECNRLGML-----------------------IDLSHTSVQTMRHVLNISSAPVIFSHSS 79 (103)
Q Consensus 40 ~~i~~mn~lGmi-----------------------iDlSH~s~~t~~d~l~~s~~Pvi~SHs~ 79 (103)
.++++|.++|.- .++-+-+.+..++.|+....|+++++.+
T Consensus 72 ~Li~~m~~~Ga~~~~l~aKifGGA~m~~~~~~~~~~~IG~rNv~~a~~~L~~~gI~i~a~dvG 134 (162)
T PRK13490 72 ILIEKMEKLGANKRNLKAKIAGGASMFNFSDKSMVMDIGNRNGKAVKKKLKELSIPILAEDIG 134 (162)
T ss_pred HHHHHHHHcCCCHHHEEEEEEeCccccCCCCccccCChhHHHHHHHHHHHHHcCCcEEEEECC
Confidence 888888887731 2444446677888899999999999876
No 252
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.63 E-value=3.4e+02 Score=19.70 Aligned_cols=66 Identities=6% Similarity=-0.041 Sum_probs=42.0
Q ss_pred HHHHHHHHcCccEEeeccCCCCchHHHHHHHHhcCCeeeccCCC---------------------HHHHHHHHHhc---C
Q psy11267 15 AVLRMFYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTS---------------------VQTMRHVLNIS---S 70 (103)
Q Consensus 15 ~~l~~~y~lGvR~i~lt~n~~n~~~~~i~~mn~lGmiiDlSH~s---------------------~~t~~d~l~~s---~ 70 (103)
+.++...++|+..+-+.+...-...++-+.+.+.|+-+=.-++. .+.+.++++.+ .
T Consensus 18 e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (254)
T TIGR03234 18 ERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALG 97 (254)
T ss_pred HHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhC
Confidence 47788889999999986533223347777778888865432211 12333444444 6
Q ss_pred CCEEEecCCc
Q psy11267 71 APVIFSHSSA 80 (103)
Q Consensus 71 ~Pvi~SHs~~ 80 (103)
.|.|.++++.
T Consensus 98 ~~~i~~~~g~ 107 (254)
T TIGR03234 98 CPQVNCLAGK 107 (254)
T ss_pred CCEEEECcCC
Confidence 8888888764
No 253
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.58 E-value=3.7e+02 Score=20.05 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=25.7
Q ss_pred HHHHHHHhcCC----eeeccCC------CHHHHHHHHHhcCCCEEEe
Q psy11267 40 LVVRECNRLGM----LIDLSHT------SVQTMRHVLNISSAPVIFS 76 (103)
Q Consensus 40 ~~i~~mn~lGm----iiDlSH~------s~~t~~d~l~~s~~Pvi~S 76 (103)
+++++++++|. +.|++.- ......++.+.++.||+++
T Consensus 152 ~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 152 SFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIAS 198 (234)
T ss_pred HHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEe
Confidence 78888888773 4566542 3555677777778888876
No 254
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.58 E-value=4.7e+02 Score=21.30 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=42.5
Q ss_pred cHHHHHHHHHcCccEEeeccCCCC-----------chH---HHHHHHHhcCC---eee----ccCCCHHHHHHHHHhc
Q psy11267 13 SMAVLRMFYKLGVRYLTLTHACPT-----------PWY---LVVRECNRLGM---LID----LSHTSVQTMRHVLNIS 69 (103)
Q Consensus 13 ~l~~l~~~y~lGvR~i~lt~n~~n-----------~~~---~~i~~mn~lGm---iiD----lSH~s~~t~~d~l~~s 69 (103)
+.+.++.+.+.|+..+.+--..-+ .+. +.++.+.+.|+ -+| +..-+...+.+.++..
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 227 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKV 227 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHH
Confidence 568999999999999998775432 122 77888888887 356 5677888888888775
No 255
>PRK07933 thymidylate kinase; Validated
Probab=20.40 E-value=1.6e+02 Score=21.53 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=31.2
Q ss_pred CcccccccccCCcH--HHH-HHHHHcCccEEeeccC--CCCchHHHHHHHH
Q psy11267 1 MIGVEGGHSLGNSM--AVL-RMFYKLGVRYLTLTHA--CPTPWYLVVRECN 46 (103)
Q Consensus 1 ~l~~Eg~~~l~~~l--~~l-~~~y~lGvR~i~lt~n--~~n~~~~~i~~mn 46 (103)
|+.+||.+.-|.+- ..| +.|...|.+.+...+- ..+++|+.+++.-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l 52 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEAL 52 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHH
Confidence 47889999888764 233 3445568887777665 4577787777764
No 256
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=20.29 E-value=64 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHhhhhc
Q psy11267 85 PSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 85 ~~~RNl~De~i~~ia~~~ 102 (103)
.+||+++-++++.|++..
T Consensus 33 ~SpR~Vs~~~a~~i~~~v 50 (208)
T COG0135 33 KSPRYVSPEQAREIASAV 50 (208)
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 488999999988887754
No 257
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=20.18 E-value=2.3e+02 Score=23.23 Aligned_cols=75 Identities=23% Similarity=0.138 Sum_probs=43.9
Q ss_pred cHHHHHHHHHc------CccEEeeccCCCCchH---------HHHHHHHhcCCe--eeccCC-----C--HHHHHHHHHh
Q psy11267 13 SMAVLRMFYKL------GVRYLTLTHACPTPWY---------LVVRECNRLGML--IDLSHT-----S--VQTMRHVLNI 68 (103)
Q Consensus 13 ~l~~l~~~y~l------GvR~i~lt~n~~n~~~---------~~i~~mn~lGmi--iDlSH~-----s--~~t~~d~l~~ 68 (103)
+++.++..++. .+|.+-++ |-+||-| ++++-+.+.|+. .|=... + ..++..+++.
T Consensus 174 ~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~ 252 (468)
T PLN02450 174 TESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKD 252 (468)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhh
Confidence 55677666543 57888888 7789988 666666666644 443322 1 1122333221
Q ss_pred -------cCCCEEEecCCccccC-CCCC
Q psy11267 69 -------SSAPVIFSHSSAFALC-PSPR 88 (103)
Q Consensus 69 -------s~~Pvi~SHs~~ral~-~~~R 88 (103)
....|+...|-.+.++ +.-|
T Consensus 253 ~~~~~~~~~~~vi~l~S~SK~~~l~GlR 280 (468)
T PLN02450 253 RKLENTDVSNRVHIVYSLSKDLGLPGFR 280 (468)
T ss_pred cccccCCCCCcEEEEEeccccCCCCCcc
Confidence 1234888888888875 5555
No 258
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=20.16 E-value=34 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=22.5
Q ss_pred ecCCccccCCCCCCCCHHHHHHhhhhc
Q psy11267 76 SHSSAFALCPSPRNVPDPVLKLVFPYL 102 (103)
Q Consensus 76 SHs~~ral~~~~RNl~De~i~~ia~~~ 102 (103)
|.|...-+++..||||+..+..+++.|
T Consensus 41 s~s~L~~v~~Gkr~Ls~~~~~k~a~~l 67 (271)
T TIGR02147 41 STSYLNDIIKGKKNLTKRMIPKFAEAL 67 (271)
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHc
Confidence 446667789999999999999998865
No 259
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.03 E-value=40 Score=20.24 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=9.3
Q ss_pred HHHHHcCccEEeecc
Q psy11267 18 RMFYKLGVRYLTLTH 32 (103)
Q Consensus 18 ~~~y~lGvR~i~lt~ 32 (103)
+.+|.||++.+|.+=
T Consensus 1 R~l~aLGI~~VG~~~ 15 (64)
T PF12826_consen 1 RFLFALGIPGVGEKT 15 (64)
T ss_dssp HHHHHCTSTT--HHH
T ss_pred CeeeeCCCCCccHHH
Confidence 457888888887654
Done!