RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11267
(103 letters)
>gnl|CDD|238626 cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals
and also called membrane or microsomal dipeptidase, is a
membrane-bound glycoprotein hydrolyzing dipeptides and
is involved in hydrolytic metabolism of penem and
carbapenem beta-lactam antibiotics. Although the
biological function of the enzyme is still unknown, it
has been suggested to play a role in the renal
glutathione metabolism.
Length = 309
Score = 153 bits (389), Expect = 1e-47
Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 16/114 (14%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW----------------YLVVRE 44
+I +EG H+LG +A+LR+ Y+LGVRYL LT + +VRE
Sbjct: 103 IISIEGAHALGGDLALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVRE 162
Query: 45 CNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
NRLG++IDLSH S +T VL+IS+APVI SHS+A ALC PRN+ D LK +
Sbjct: 163 MNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAI 216
>gnl|CDD|216386 pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family
M19).
Length = 316
Score = 153 bits (389), Expect = 2e-47
Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 17/115 (14%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPWY-----------L------VVR 43
++G+EG H+LG+ +A+LR FY LGVRYL LT C + L VVR
Sbjct: 106 LLGIEGAHALGDDLALLRTFYALGVRYLGLTWNCNNLFADGCLERKRDGGLTRFGKEVVR 165
Query: 44 ECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
E NRLG+LIDLSH S +T VL +S APV+ SHS+A ALC PRN+ D LK +
Sbjct: 166 EMNRLGILIDLSHLSERTFWDVLELSKAPVVASHSNARALCDHPRNLTDEQLKAI 220
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 117 bits (296), Expect = 1e-33
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW----------------YLVVRE 44
++ +EG LG+ + L +F+ LGVR L LT + +VRE
Sbjct: 98 VLHMEGAEPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVRE 157
Query: 45 CNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLVF 99
N LG++IDLSH S +T VL++S APV+ SHS+A AL PRN+ D LK +
Sbjct: 158 MNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIA 212
>gnl|CDD|132724 cd02737, RNAP_IV_NRPD1_C, Largest subunit (NRPD1) of Higher plant
RNA polymerase IV, C-terminal domain. Higher plants
have five multi-subunit nuclear RNA polymerases: RNAP I,
RNAP II and RNAP III, which are essential for viability;
plus the two isoforms of the non-essential polymerase
RNAP IV (IVa and IVb), which specialize in small
RNA-mediated gene silencing pathways. RNAP IVa and/or
RNAP IVb might be involved in RNA-directed DNA
methylation of endogenous repetitive elements, silencing
of transgenes, regulation of flowering-time genes,
inducible regulation of adjacent gene pairs, and
spreading of mobile silencing signals. NRPD1a is the
largest subunit of RNAP IVa, whereas NRPD1b is the
largest subunit of RNAP IVb. The full subunit
compositions of RNAP IVa and RNAP IVb are not known, nor
are their templates or enzymatic products. However, it
has been shown that RNAP IVa and, to a lesser extent,
RNAP IVb are crucial for several RNA-mediated gene
silencing phenomena.
Length = 381
Score = 27.0 bits (60), Expect = 1.6
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 37 PWYLVVRECNRLGMLIDL--SH-TSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDP 93
W +V+ C + LID S S+Q ++ VL I +A F A+ + ++V
Sbjct: 237 AWNVVMDACIPVMDLIDWERSMPYSIQQIKSVLGIDAAFEQFVQRLESAVSMTGKSVLRE 296
Query: 94 VLKLVFPYLT 103
L LV +T
Sbjct: 297 HLLLVADSMT 306
>gnl|CDD|234321 TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase.
Members of this protein family contain a domain
duplication. The characterized member from Acinetobacter
johnsonii is polyphosphate:AMP phosphotransferase (PAP),
which can transfer the terminal phosphate from poly(P)
to AMP, yielding ADP. In the opposite direction, this
enzyme can synthesize poly(P). Each domain of this
protein family is homologous to polyphosphate kinase, an
enzyme that can run in the forward direction to extend a
polyphosphate chain with a new terminal phosphate from
ATP, or in reverse to make ATP (or GTP) from ADP (or
GDP) [Central intermediary metabolism, Phosphorus
compounds].
Length = 493
Score = 26.5 bits (59), Expect = 3.1
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 20 FYKLGVRYLTLTHACPTPWYLVVRECNRLGMLIDLSHTSVQTMRHVL 66
+ KL R L T PW +V E +R S+ R +L
Sbjct: 189 YRKLAERMLRYTSTPYAPWTVVEGEDDRYR--------SLTVGRTLL 227
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 25.5 bits (56), Expect = 5.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 2 IGVEGGHSLGNSMAVLRMFYKLGV----------RYLTLTHAC 34
+ + G H++ N + VL + GV Y LTH C
Sbjct: 263 LKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRC 305
>gnl|CDD|109900 pfam00862, Sucrose_synth, Sucrose synthase. Sucrose synthases
catalyze the synthesis of sucrose from UDP-glucose and
fructose. This family includes the bulk of the sucrose
synthase protein. However the carboxyl terminal region
of the sucrose synthases belongs to the glycosyl
transferase family pfam00534.
Length = 550
Score = 25.6 bits (56), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 6 GGHSLGNSMAVLRMFYKLGVRYLTLTHA 33
G +S GN +A L + +KLGV T+ HA
Sbjct: 407 GNYSDGNLVASL-LAHKLGVTQCTIAHA 433
>gnl|CDD|215073 PLN00142, PLN00142, sucrose synthase.
Length = 815
Score = 25.3 bits (56), Expect = 6.8
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 6 GGHSLGNSMAVLRMFYKLGVRYLTLTHA 33
G +S GN +A L + +KLGV T+ HA
Sbjct: 414 GNYSDGNLVASL-LAHKLGVTQCTIAHA 440
>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases,
includes Ras-related GTP-binding proteins A and B.
RagA and RagB are closely related Rag GTPases
(ras-related GTP-binding protein A and B) that
constitute a unique subgroup of the Ras superfamily,
and are functional homologs of Saccharomyces cerevisiae
Gtr1. These domains function by forming heterodimers
with RagC or RagD, and similarly, Gtr1 dimerizes with
Gtr2, through the carboxy-terminal segments. They play
an essential role in regulating amino acid-induced
target of rapamycin complex 1 (TORC1) kinase signaling,
exocytic cargo sorting at endosomes, and epigenetic
control of gene expression. In response to amino acids,
the Rag GTPases guide the TORC1 complex to activate the
platform containing Rheb proto-oncogene by driving the
relocalization of mTORC1 from discrete locations in the
cytoplasm to a late endosomal and/or lysosomal
compartment that is Rheb-enriched and contains Rab-7.
Length = 286
Score = 24.9 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 43 RECNRLGMLIDLSHTSVQTMRH-VLNI 68
R+ RLG ID+ H+ V+ + + VLN+
Sbjct: 26 RDTRRLGATIDVEHSHVRFLGNLVLNL 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.440
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,103,590
Number of extensions: 405934
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 18
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)