RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11267
(103 letters)
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 170 bits (432), Expect = 9e-54
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
++ +EG ++G + L +F+ LG+R L + PT +
Sbjct: 135 IMHMEGAEAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAG 194
Query: 39 YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
+V ECNRL +++DLSH + + V +S AP++ +HS+A A+ PS RN+ D L ++
Sbjct: 195 RRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMI 254
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 169 bits (429), Expect = 3e-53
Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 22/120 (18%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
+IGVEGGHS+ +S+ VLR Y+LG+RYLTLTH+C TPW
Sbjct: 121 LIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQSQGLSPFG 180
Query: 39 YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
VV+E NRLG+LIDL+H SV TM+ L +S APVIFSHSSA+++C S RNVPD VL+LV
Sbjct: 181 QRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 164 bits (417), Expect = 7e-52
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------YLVVREC 45
+ G + H+ + + + +F +LGV + + + +V E
Sbjct: 89 LYGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEM 148
Query: 46 NRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
NR+G++ DLSH +T V+ S PV +SH L PRN D LK +
Sbjct: 149 NRVGIMCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFI 201
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 163 bits (416), Expect = 1e-51
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW----------------YLVVRE 44
M+ +EG +G + L GV + LT ++
Sbjct: 103 MLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHL 162
Query: 45 CNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
N + D+SH SV+ L + VI SHS+A A+C PRN+ D +K +
Sbjct: 163 LNERKVFTDVSHLSVKAFWETLEQ-AEFVIASHSNAKAICSHPRNLDDEQIKAM 215
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 162 bits (412), Expect = 2e-50
Identities = 58/115 (50%), Positives = 72/115 (62%), Gaps = 17/115 (14%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW-----------------YLVVR 43
++G EGGHS+ NS+A LR Y LGVRY+TLTH W VVR
Sbjct: 119 LMGAEGGHSIDNSLATLRALYALGVRYMTLTHNDNNAWADSATDEPGVGGLSAFGREVVR 178
Query: 44 ECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
E NR GML+DLSH + TMR L+ S+APVIFSHSS+ A+C PRN+PD VL+ +
Sbjct: 179 EMNREGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLERL 233
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 158 bits (401), Expect = 1e-48
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW-------------------YLV 41
+ +E +G ++++ FYK G+R H
Sbjct: 155 FVSMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADSSTDPKGKIWNGYSPLGLRW 214
Query: 42 VRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLKLV 98
+ E NRLG++ID+SH S + + +S AP+I SHS A+ PRN+ D LK +
Sbjct: 215 LAEANRLGIVIDVSHASDDVVDQSVALSKAPIIASHSGPKAVYDHPRNLDDARLKKI 271
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 158 bits (401), Expect = 1e-48
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 1 MIGVEGGHSLGNSMAVLRMFYKLGVRYLTLTHACPTPW---------------------- 38
++ + + LG+ ++ L + GVR ++ W
Sbjct: 134 VMSMLNAYPLGDDLSQLDKWAARGVRMFGFSYVGNNDWADSSRPLPFFNDSPDALGGLSP 193
Query: 39 --YLVVRECNRLGMLIDLSHTSVQTMRHVLNISSAPVIFSHSSAFALCPSPRNVPDPVLK 96
V N LG++ID+S S + + V +S AP++ SHS+ AL RN+ D ++
Sbjct: 194 LGKQAVERLNDLGVIIDVSQMSTKALEQVAALSRAPIVASHSAPRALVDIKRNLSDHEMQ 253
Query: 97 LV 98
L+
Sbjct: 254 LI 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.16
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 21/44 (47%)
Query: 7 GHSLG---------NSM----AVLRMFYKLGVRY--LTLTHACP 35
GHSLG + M V ++ V Y +T+ A P
Sbjct: 1761 GHSLGEYAALASLADVMSIESLV-----EV-VFYRGMTMQVAVP 1798
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 25.6 bits (56), Expect = 3.8
Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 64 HVLNISSAPVIFSHSSAFALCPS---PRNVPDPVLKLVFP 100
+ ++ P+++ H +++ +L +FP
Sbjct: 714 TCIELNFNPLMYMH-----TYCQEGPGQSITPRILAKLFP 748
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 25.2 bits (56), Expect = 4.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
G D+++TSV T+ HV +
Sbjct: 53 EAGYTFDIAYTSVLKRAIRTLWHVQD 78
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 25.2 bits (56), Expect = 4.5
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
L DL TSV T +L
Sbjct: 47 ALNFEFDLVFTSVLNRSIHTAWLILE 72
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A
{Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 25.2 bits (56), Expect = 4.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
G D ++TSV T+ +VL+
Sbjct: 46 EEGYSFDFAYTSVLKRAIHTLWNVLD 71
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 25.2 bits (56), Expect = 4.7
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
+ G D++ +S+ T+ +L
Sbjct: 71 QEGYSFDIAFSSLLSRANDTLNIILR 96
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC;
2.01A {Cryptosporidium parvum}
Length = 267
Score = 25.2 bits (56), Expect = 5.0
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
G D+ +TSV T VL
Sbjct: 64 EKGFKFDVVYTSVLKRAIMTTWTVLK 89
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyerate mutase, SH3 domain binding, structural
genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP:
c.60.1.1
Length = 265
Score = 25.2 bits (56), Expect = 5.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
+L D+ +TS+ T L+
Sbjct: 48 EHDLLPDVLYTSLLRRAITTAHLALD 73
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 25.3 bits (55), Expect = 5.1
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 65 VLNISSAPVIFSHSSAFALCPS---PRNVPDPVLKLVFP 100
V+ + P++ H + P R + V+K++FP
Sbjct: 721 VIEANFNPMMMMH-----IFPYAGKSRRLTQNVIKMLFP 754
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 24.9 bits (55), Expect = 5.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
+L D+ +TS+ T L+
Sbjct: 71 EHNLLPDVLYTSLLRRAITTAHLALD 96
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 24.8 bits (55), Expect = 5.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
D+ +TSV T +VL
Sbjct: 55 EKNFKFDVVYTSVLKRAICTAWNVLK 80
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 24.8 bits (55), Expect = 5.7
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
+ D+ +TS T L
Sbjct: 44 EKKVYPDVLYTSKLSRAIQTANIALE 69
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 24.8 bits (55), Expect = 5.9
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
G D+ TSVQ T+ VL+
Sbjct: 47 DAGYEFDICFTSVQKRAIRTLWTVLD 72
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Length = 419
Score = 24.7 bits (53), Expect = 7.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 7 GHSLGNSMAVL 17
GHSLG ++A L
Sbjct: 234 GHSLGAALATL 244
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 24.5 bits (53), Expect = 8.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 7 GHSLGNSMAVL--RMFYKLGVRYLTLTHACP 35
GHSLG ++A + G ++ P
Sbjct: 144 GHSLGGALATVAGADLRGNGYDIDVFSYGAP 174
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 24.0 bits (53), Expect = 9.5
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 5/26 (19%)
Query: 47 RLGMLIDLSHTSVQ-----TMRHVLN 67
G D++ TS T + +L
Sbjct: 51 SRGYKFDIAFTSALQRAQKTCQIILE 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.440
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,540,482
Number of extensions: 74774
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 47
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)