Query psy1127
Match_columns 65
No_of_seqs 156 out of 775
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 62.7 11 0.00036 17.6 3.8 26 26-51 11-36 (37)
2 2lat_A Dolichyl-diphosphooligo 33.3 38 0.0013 15.7 2.2 17 1-17 1-17 (37)
3 3kg2_A Glutamate receptor 2; I 22.6 88 0.003 22.0 3.5 33 31-63 787-819 (823)
4 1vf5_A Cytochrome B6; photosyn 21.1 74 0.0025 20.0 2.6 26 34-59 90-115 (215)
5 3cx5_C Cytochrome B-C1 complex 20.0 92 0.0031 21.3 3.1 26 34-59 86-111 (385)
6 2qjy_A Cytochrome B; cytochrom 18.9 99 0.0034 21.6 3.1 26 34-59 101-126 (445)
7 1rkl_A Dolichyl-diphosphooligo 16.6 35 0.0012 15.7 0.3 15 1-15 1-15 (36)
8 1pd3_A Nonstructural protein N 16.3 90 0.0031 15.6 1.8 11 2-12 39-49 (58)
9 1z8u_A Alpha-hemoglobin stabil 15.0 87 0.003 17.5 1.7 14 44-57 42-55 (102)
10 1pp9_C Cytochrome B; cytochrom 12.1 1.4E+02 0.0049 20.2 2.4 24 34-57 87-110 (379)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=62.73 E-value=11 Score=17.58 Aligned_cols=26 Identities=8% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy1127 26 NFPKAFVWWIGSHAVMFFFLFRNFYK 51 (65)
Q Consensus 26 ~~p~~~~~~~~~~~~s~l~LF~~FY~ 51 (65)
+-.+.-.++++.......+||++++.
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhcc
Confidence 44677788999999999999999875
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=33.28 E-value=38 Score=15.67 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=11.6
Q ss_pred ChHHHHHHHHHHHHHHH
Q psy1127 1 MRAVYISIQFVLIMVHA 17 (65)
Q Consensus 1 ~iT~~QiiQF~~~~~~~ 17 (65)
|||--|+-.|+..+..+
T Consensus 1 MIsD~qL~~lan~lG~~ 17 (37)
T 2lat_A 1 MITDVQLAIFANMLGVS 17 (37)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 67777888887665433
No 3
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=22.59 E-value=88 Score=22.04 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Q psy1127 31 FVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAKF 63 (65)
Q Consensus 31 ~~~~~~~~~~s~l~LF~~FY~~sY~~~~~~~~~ 63 (65)
+..+.++..++++++...+..+...+.++.+..
T Consensus 787 f~il~~g~~la~~vf~~E~~~~~~~~~~~~~~~ 819 (823)
T 3kg2_A 787 FYILVGGLGLAMLVALIEFCYKSRAEAKRMKGL 819 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhccCC
Confidence 445678888999999999988887766554443
No 4
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=21.07 E-value=74 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKPVK 59 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~~~ 59 (65)
..+.....++-++..+|+.+|+++++
T Consensus 90 As~ffi~~ylHi~Rglyygsy~~p~~ 115 (215)
T 1vf5_A 90 ASMMVLMMILHVFRVYLTGGFKKPRE 115 (215)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSSCS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 34555666677888999999987653
No 5
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=19.97 E-value=92 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKPVK 59 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~~~ 59 (65)
.++.....++-++..+|+.+|+++++
T Consensus 86 As~ffi~iylHi~Rglyygsy~~Pr~ 111 (385)
T 3cx5_C 86 ASFFFMVMFMHMAKGLYYGSYRSPRV 111 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 34556677777899999999987654
No 6
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=18.90 E-value=99 Score=21.56 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKPVK 59 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~~~ 59 (65)
.++.....++-++..+|+.+|+++++
T Consensus 101 As~ffi~iylHi~RglyygsY~~Pr~ 126 (445)
T 2qjy_A 101 ASLFFIAVYLHIFRGLYYGSYKAPRE 126 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcc
Confidence 45556777778899999999987654
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=16.60 E-value=35 Score=15.71 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHHHH
Q psy1127 1 MRAVYISIQFVLIMV 15 (65)
Q Consensus 1 ~iT~~QiiQF~~~~~ 15 (65)
|||--|+-.|...+.
T Consensus 1 MIsD~qL~~lan~lG 15 (36)
T 1rkl_A 1 MISDEQLNSLAITFG 15 (36)
T ss_dssp CCSSCGGGHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 455556666655443
No 8
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=16.25 E-value=90 Score=15.61 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=8.3
Q ss_pred hHHHHHHHHHH
Q psy1127 2 RAVYISIQFVL 12 (65)
Q Consensus 2 iT~~QiiQF~~ 12 (65)
||-+|-+|..+
T Consensus 39 ItfmqalQLll 49 (58)
T 1pd3_A 39 ITFMQALQLLL 49 (58)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888754
No 9
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=15.03 E-value=87 Score=17.46 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCC
Q psy1127 44 FLFRNFYKEQYVKP 57 (65)
Q Consensus 44 ~LF~~FY~~sY~~~ 57 (65)
==+.|||++-|.++
T Consensus 42 ~DWvnfYinyy~~~ 55 (102)
T 1z8u_A 42 EDWMNFYINYYRQQ 55 (102)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 35788999888653
No 10
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=12.12 E-value=1.4e+02 Score=20.25 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKP 57 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~ 57 (65)
.++.....++-++..+|+.+|+++
T Consensus 87 As~ffi~~ylHi~Rglyygsy~~~ 110 (379)
T 1pp9_C 87 ASMFFICLYMHVGRGLYYGSYTFL 110 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHheecCc
Confidence 455667777788999999999864
Done!