Query psy1127
Match_columns 65
No_of_seqs 156 out of 775
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 22:35:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 63.6 4.7 0.00034 17.6 3.8 26 26-51 11-36 (37)
2 d1xmeb2 f.17.2.1 (B:3-36) Bact 37.1 14 0.0011 15.3 2.4 20 27-46 12-31 (34)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 27.3 30 0.0022 20.8 3.3 25 34-58 86-110 (261)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 26.9 20 0.0015 21.3 2.4 25 34-58 73-97 (246)
5 d1q90b_ f.21.1.2 (B:) Cytochro 21.6 31 0.0022 20.1 2.5 24 35-58 88-111 (212)
6 d1pd3a_ a.30.3.1 (A:) Nonstruc 18.9 34 0.0025 15.7 1.8 12 2-13 35-46 (54)
7 d1z8ua1 a.7.11.1 (A:2-91) Alph 10.2 73 0.0053 16.1 1.7 12 45-56 42-53 (90)
8 d1wkta_ b.11.1.2 (A:) Yeast ki 9.3 6.8 0.0005 19.7 -2.7 6 49-54 79-84 (88)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 6.6 1.1E+02 0.0082 12.1 2.4 11 36-46 5-15 (32)
10 d2ftxb1 d.300.1.2 (B:155-213) 5.7 49 0.0036 15.6 -0.3 9 47-55 45-53 (59)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=63.56 E-value=4.7 Score=17.58 Aligned_cols=26 Identities=8% Similarity=0.228 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy1127 26 NFPKAFVWWIGSHAVMFFFLFRNFYK 51 (65)
Q Consensus 26 ~~p~~~~~~~~~~~~s~l~LF~~FY~ 51 (65)
+-.+.-.++++......-+||++++.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 34567788898888899999999875
No 2
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=37.14 E-value=14 Score=15.33 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=13.5
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q psy1127 27 FPKAFVWWIGSHAVMFFFLF 46 (65)
Q Consensus 27 ~p~~~~~~~~~~~~s~l~LF 46 (65)
+.++|..+++++...|+.|-
T Consensus 12 yekgwlafslamlfvfiali 31 (34)
T d1xmeb2 12 YEKGWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 34677777777777776653
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.32 E-value=30 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKPV 58 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~~ 58 (65)
..+.....++-++..+|..+|++++
T Consensus 86 a~~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 86 ASFFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHhccccCcc
Confidence 3456667777899999999998775
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.86 E-value=20 Score=21.30 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1127 34 WIGSHAVMFFFLFRNFYKEQYVKPV 58 (65)
Q Consensus 34 ~~~~~~~s~l~LF~~FY~~sY~~~~ 58 (65)
..+.....++-++..+|..+|++++
T Consensus 73 as~~~~~~~lHm~r~~~~~sy~~~~ 97 (246)
T d1ppjc2 73 ASMFFICLYMHVGRGLYYGSYTFLE 97 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccchH
Confidence 3455666777799999999997654
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.60 E-value=31 Score=20.13 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q psy1127 35 IGSHAVMFFFLFRNFYKEQYVKPV 58 (65)
Q Consensus 35 ~~~~~~s~l~LF~~FY~~sY~~~~ 58 (65)
.+.....++-++..||..+|++++
T Consensus 88 s~~~~~~~lHm~r~~~~gsyk~pr 111 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGFKRPR 111 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSC
T ss_pred hHHHHHHHHHHHHHHHcCcccCcc
Confidence 455566677788899999997764
No 6
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=18.91 E-value=34 Score=15.66 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHH
Q psy1127 2 RAVYISIQFVLI 13 (65)
Q Consensus 2 iT~~QiiQF~~~ 13 (65)
||-+|-+|..+-
T Consensus 35 itfmqalqllle 46 (54)
T d1pd3a_ 35 ITFMQALQLLLE 46 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678888887653
No 7
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=73 Score=16.08 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcC
Q psy1127 45 LFRNFYKEQYVK 56 (65)
Q Consensus 45 LF~~FY~~sY~~ 56 (65)
=+.|||++-|.+
T Consensus 42 DWvn~Yinyy~~ 53 (90)
T d1z8ua1 42 DWMNFYINYYRQ 53 (90)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 467888887765
No 8
>d1wkta_ b.11.1.2 (A:) Yeast killer toxin {Williopsis mrakii [TaxId: 4963]}
Probab=9.32 E-value=6.8 Score=19.74 Aligned_cols=6 Identities=50% Similarity=1.170 Sum_probs=2.5
Q ss_pred HHHHHh
Q psy1127 49 FYKEQY 54 (65)
Q Consensus 49 FY~~sY 54 (65)
||+++|
T Consensus 79 fyirsy 84 (88)
T d1wkta_ 79 FYIRSY 84 (88)
T ss_dssp SCCCEE
T ss_pred eEEEEE
Confidence 344444
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.60 E-value=1.1e+02 Score=12.14 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy1127 36 GSHAVMFFFLF 46 (65)
Q Consensus 36 ~~~~~s~l~LF 46 (65)
...++.|+.||
T Consensus 5 avfyivfialf 15 (32)
T d2e74e1 5 AVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred eeHHHHHHHHH
Confidence 34444555554
No 10
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.72 E-value=49 Score=15.59 Aligned_cols=9 Identities=44% Similarity=1.195 Sum_probs=4.8
Q ss_pred HHHHHHHhc
Q psy1127 47 RNFYKEQYV 55 (65)
Q Consensus 47 ~~FY~~sY~ 55 (65)
++||+..|.
T Consensus 45 S~fF~tnYi 53 (59)
T d2ftxb1 45 SDFYKTKYI 53 (59)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 455555553
Done!