RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1127
         (65 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   IQFVLIMVHAFQLLFI----DCNFPKAFVWWIG-SHAVMFFFLFRNFYKEQYVKPVKTAK 62
           IQFVL + H    L+      C  P      +G  + V + FLF NFY + Y KP K  K
Sbjct: 185 IQFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKKKK 244


>gnl|CDD|150566 pfam09907, DUF2136, Uncharacterized protein conserved in bacteria
          (DUF2136).  This domain, found in various hypothetical
          prokaryotic proteins, has no known function.
          Length = 76

 Score = 23.6 bits (52), Expect = 5.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 22 FIDCNFPKAFVWWIGSHA 39
           ID    K ++ +IG+HA
Sbjct: 53 AIDFRRGKVYIKFIGTHA 70


>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
           like protein HpnN.  The genomes containing members of
           this family share the machinery for the biosynthesis of
           hopanoid lipids. Furthermore, the genes of this family
           are usually located proximal to other components of this
           biological process. The proteins appear to be related to
           the RND family of export proteins, particularly the
           hydrophobe/amphiphile efflux-3 (HAE3) family represented
           by TIGR00921.
          Length = 862

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 9/37 (24%)

Query: 13  IMVHAFQLLFIDCNFPKAFVWWIGSHAVMFFFLFRNF 49
            +V AF          +AF++ + +  V+     R  
Sbjct: 709 TVVGAFL---------QAFIYALVAITVLLLLTLRRV 736


>gnl|CDD|219662 pfam07954, DUF1689, Protein of unknown function (DUF1689).
          Family of fungal proteins with unknown function. A
          member of this family has been found to localise in the
          mitochondria.
          Length = 152

 Score = 23.5 bits (51), Expect = 9.8
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 30 AFVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAKFFP 65
           +  + G  A          YK   +K V   + F 
Sbjct: 34 LWGGYGGFMAGFGGPTAYYRYKTGAIKGVPVPRIFF 69


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.342    0.148    0.513 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,344,032
Number of extensions: 248006
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 23
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 53 (24.1 bits)