RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1127
         (65 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.63
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 16/42 (38%)

Query: 3   AVYISI-----QFVLIMVHAFQLLFIDCNFPKAFVWWIGSHA 39
           AV I+       F + +  A  +LF           +IG   
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLF-----------FIGVRC 310


>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
           myristol group, icosahedral virus; HET: MYR; 3.30A
           {Grass carp reovirus} PDB: 3k1q_A
          Length = 1299

 Score = 24.1 bits (51), Expect = 5.0
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 2   RAVYISIQFVLIMVHAFQLLFIDCNFPKAFVWWIGSHAVMFFFLFRNFYKEQYVKPV 58
           RA    +   L M  A  +  +  NFP    W       +F     +      VKP 
Sbjct: 597 RAAIAMLGTALQMTTAGGVSVLKVNFPTRAFW-----TQVFNLYATHATTLHLVKPT 648


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.342    0.148    0.513 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 981,451
Number of extensions: 40668
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 3
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 51 (23.6 bits)