RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1127
         (65 letters)



>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
           PAPL {Vaccinia virus [TaxId: 10245]}
          Length = 468

 Score = 21.7 bits (46), Expect = 9.1
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 35  IGSHAVMFFFLFRNFYKEQ 53
           + +H +++  L    YK+ 
Sbjct: 409 LCAHILLYQMLTSGEYKQC 427


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.342    0.148    0.513 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 255,956
Number of extensions: 9019
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 5
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 47 (22.1 bits)