Query psy11270
Match_columns 98
No_of_seqs 102 out of 431
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:36:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 3.7E-41 8E-46 252.1 3.8 91 1-93 125-215 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 5.7E-40 1.2E-44 249.3 6.9 84 1-84 123-206 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.9E-37 6.2E-42 232.2 6.2 85 1-85 121-205 (236)
4 KOG0841|consensus 100.0 1.9E-36 4.1E-41 229.6 8.3 85 1-85 123-207 (247)
5 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 39.8 4.5 55 22-78 21-75 (78)
6 PF12862 Apc5: Anaphase-promot 95.4 0.11 2.3E-06 33.6 6.7 77 5-87 2-79 (94)
7 PF13374 TPR_10: Tetratricopep 89.7 0.4 8.6E-06 25.1 2.4 24 22-45 18-41 (42)
8 PF13414 TPR_11: TPR repeat; P 88.2 2.7 5.9E-05 24.3 5.6 47 22-77 19-66 (69)
9 KOG1840|consensus 85.2 1.8 3.8E-05 36.6 4.9 54 22-76 257-310 (508)
10 KOG1840|consensus 81.9 3.1 6.7E-05 35.2 5.0 63 21-84 340-402 (508)
11 PF13424 TPR_12: Tetratricopep 81.2 3.5 7.7E-05 24.5 3.9 40 44-85 1-40 (78)
12 PF13431 TPR_17: Tetratricopep 78.5 2 4.4E-05 22.8 2.0 33 28-69 1-33 (34)
13 KOG4162|consensus 76.0 11 0.00023 33.8 6.6 55 14-77 452-506 (799)
14 PF03755 YicC_N: YicC-like fam 73.4 7.6 0.00016 27.4 4.3 62 23-84 81-146 (159)
15 CHL00033 ycf3 photosystem I as 65.1 31 0.00067 23.5 5.9 50 22-77 51-100 (168)
16 PF14559 TPR_19: Tetratricopep 61.6 25 0.00054 20.0 4.3 45 22-75 7-51 (68)
17 PF06552 TOM20_plant: Plant sp 61.5 21 0.00046 26.6 4.8 69 9-81 38-108 (186)
18 KOG1258|consensus 59.4 16 0.00035 31.6 4.3 66 16-93 89-154 (577)
19 PF13371 TPR_9: Tetratricopept 57.8 34 0.00075 19.6 5.9 48 22-78 11-58 (73)
20 PF08717 nsp8: nsp8 replicase; 56.6 15 0.00032 27.8 3.2 37 22-78 15-51 (199)
21 KOG1173|consensus 56.4 11 0.00024 32.7 2.8 64 20-97 394-458 (611)
22 PRK02603 photosystem I assembl 52.4 74 0.0016 21.8 6.1 51 22-78 51-101 (172)
23 PF12083 DUF3560: Domain of un 49.5 29 0.00062 24.3 3.6 30 20-50 20-49 (126)
24 PF13432 TPR_16: Tetratricopep 48.6 49 0.0011 18.7 5.6 47 22-77 13-59 (65)
25 PRK14720 transcript cleavage f 48.4 40 0.00086 30.7 5.1 49 22-80 132-180 (906)
26 PLN03088 SGT1, suppressor of 47.7 69 0.0015 25.2 5.9 46 23-77 19-64 (356)
27 TIGR00990 3a0801s09 mitochondr 47.5 47 0.001 27.7 5.2 54 22-77 483-536 (615)
28 KOG2002|consensus 46.6 87 0.0019 29.0 6.9 61 23-87 430-490 (1018)
29 PF12758 DUF3813: Protein of u 45.4 24 0.00052 22.1 2.4 23 64-86 25-47 (63)
30 TIGR02795 tol_pal_ybgF tol-pal 44.9 70 0.0015 19.4 6.4 49 24-78 57-105 (119)
31 PF04781 DUF627: Protein of un 44.6 26 0.00056 24.1 2.7 64 2-76 39-105 (111)
32 COG3573 Predicted oxidoreducta 44.0 8.4 0.00018 32.3 0.2 10 88-97 136-145 (552)
33 KOG0553|consensus 43.6 45 0.00098 26.7 4.3 43 24-75 99-141 (304)
34 KOG1126|consensus 43.1 53 0.0012 28.9 4.9 64 3-75 486-549 (638)
35 PF02785 Biotin_carb_C: Biotin 42.4 28 0.00062 23.3 2.6 35 63-97 59-105 (107)
36 KOG1679|consensus 42.3 22 0.00048 27.9 2.3 19 27-46 218-236 (291)
37 PF13176 TPR_7: Tetratricopept 42.1 37 0.0008 17.6 2.6 17 22-38 15-31 (36)
38 CHL00033 ycf3 photosystem I as 41.4 1.1E+02 0.0024 20.7 5.9 47 22-76 88-140 (168)
39 PF12895 Apc3: Anaphase-promot 41.4 45 0.00098 20.0 3.3 13 62-74 38-50 (84)
40 COG3063 PilF Tfp pilus assembl 40.6 62 0.0013 25.3 4.5 45 22-75 85-129 (250)
41 PF08424 NRDE-2: NRDE-2, neces 40.2 1E+02 0.0023 23.9 5.8 57 22-79 118-184 (321)
42 PF12688 TPR_5: Tetratrico pep 39.6 1.2E+02 0.0026 20.5 6.3 51 22-78 17-67 (120)
43 PHA02103 hypothetical protein 39.4 9.3 0.0002 26.7 -0.1 13 3-15 79-91 (135)
44 KOG0687|consensus 38.7 1.6E+02 0.0035 24.4 6.8 76 3-81 54-136 (393)
45 PHA02942 putative transposase; 38.6 1.1E+02 0.0024 24.8 5.9 67 14-82 19-86 (383)
46 PF13429 TPR_15: Tetratricopep 38.2 11 0.00023 27.9 0.0 62 4-78 45-106 (280)
47 PF03635 Vps35: Vacuolar prote 38.0 21 0.00046 31.6 1.8 41 21-61 700-741 (762)
48 COG2250 Uncharacterized conser 37.8 1.3E+02 0.0029 20.6 6.1 34 62-95 26-60 (132)
49 KOG2002|consensus 36.0 84 0.0018 29.1 5.2 50 27-80 250-301 (1018)
50 PF09986 DUF2225: Uncharacteri 35.2 1.9E+02 0.004 21.4 6.4 62 21-84 92-156 (214)
51 PRK10370 formate-dependent nit 34.7 1.4E+02 0.0031 21.3 5.5 47 22-76 89-137 (198)
52 PF06552 TOM20_plant: Plant sp 34.3 51 0.0011 24.6 3.1 65 20-95 5-70 (186)
53 COG5187 RPN7 26S proteasome re 33.7 58 0.0013 26.8 3.5 33 48-81 115-147 (412)
54 TIGR02552 LcrH_SycD type III s 33.5 1.3E+02 0.0028 19.1 5.7 33 45-78 82-114 (135)
55 TIGR00990 3a0801s09 mitochondr 33.1 1.3E+02 0.0028 25.1 5.6 47 24-77 312-359 (615)
56 PF14490 HHH_4: Helix-hairpin- 32.9 46 0.001 21.3 2.4 30 29-58 56-86 (94)
57 TIGR02521 type_IV_pilW type IV 32.4 1.5E+02 0.0033 19.6 6.1 15 62-76 78-92 (234)
58 PF04698 Rab_eff_C: Rab effect 32.0 39 0.00084 30.1 2.4 30 55-84 25-59 (714)
59 KOG1941|consensus 31.5 1.4E+02 0.003 25.3 5.5 56 21-79 137-192 (518)
60 cd03006 PDI_a_EFP1_N PDIa fami 31.5 10 0.00022 25.4 -0.9 29 70-98 13-41 (113)
61 PF00244 14-3-3: 14-3-3 protei 31.0 1.5E+02 0.0032 22.2 5.2 64 18-86 83-159 (236)
62 PRK12370 invasion protein regu 30.8 1.6E+02 0.0034 24.5 5.8 14 62-75 385-398 (553)
63 COG1885 Uncharacterized protei 30.0 15 0.00034 25.3 -0.2 40 46-88 69-108 (115)
64 PRK05456 ATP-dependent proteas 29.8 45 0.00096 24.0 2.1 27 55-81 127-158 (172)
65 PF12569 NARP1: NMDA receptor- 29.7 2E+02 0.0042 24.4 6.2 62 15-77 155-222 (517)
66 PRK09782 bacteriophage N4 rece 28.9 1.8E+02 0.0039 26.7 6.1 44 24-76 627-670 (987)
67 PRK15359 type III secretion sy 28.8 1.9E+02 0.004 19.5 6.1 47 22-77 74-120 (144)
68 PF08718 GLTP: Glycolipid tran 28.6 65 0.0014 22.4 2.8 36 46-81 79-117 (149)
69 PF10516 SHNi-TPR: SHNi-TPR; 28.4 71 0.0015 17.6 2.4 35 6-43 4-38 (38)
70 PRK11820 hypothetical protein; 27.4 85 0.0018 24.6 3.4 58 26-84 85-143 (288)
71 PF10415 FumaraseC_C: Fumarase 27.4 66 0.0014 19.0 2.2 14 66-79 12-25 (55)
72 cd02962 TMX2 TMX2 family; comp 27.4 25 0.00053 24.9 0.4 30 68-98 30-59 (152)
73 KOG1107|consensus 27.4 1.1E+02 0.0023 27.6 4.3 44 20-63 654-698 (760)
74 PRK11189 lipoprotein NlpI; Pro 27.1 2.6E+02 0.0055 21.1 6.0 44 23-75 115-158 (296)
75 PF09268 Clathrin-link: Clathr 27.0 79 0.0017 16.1 2.2 16 58-73 8-23 (24)
76 cd02680 MIT_calpain7_2 MIT: do 27.0 62 0.0013 20.5 2.2 15 64-78 2-16 (75)
77 cd02993 PDI_a_APS_reductase PD 26.5 24 0.00051 22.6 0.2 28 71-98 6-33 (109)
78 smart00685 DM14 Repeats in fly 26.3 1.6E+02 0.0035 17.9 5.6 40 21-83 3-44 (59)
79 PRK04841 transcriptional regul 26.2 3.3E+02 0.0071 23.5 7.0 56 22-78 547-602 (903)
80 TIGR03302 OM_YfiO outer membra 25.7 2.4E+02 0.0052 19.8 6.1 48 24-77 51-98 (235)
81 cd07640 BAR_ASAP3 The Bin/Amph 25.3 2.7E+02 0.0059 21.3 5.7 36 26-61 39-75 (213)
82 PF14938 SNAP: Soluble NSF att 24.5 3E+02 0.0066 20.5 6.5 52 23-78 52-103 (282)
83 PF09986 DUF2225: Uncharacteri 24.5 2.9E+02 0.0064 20.4 6.5 56 16-74 135-190 (214)
84 PRK13259 regulatory protein Sp 23.9 69 0.0015 21.4 2.0 32 6-37 57-88 (94)
85 PF13181 TPR_8: Tetratricopept 23.5 1.1E+02 0.0023 14.9 3.0 18 60-77 12-29 (34)
86 PF07554 FIVAR: Uncharacterise 23.3 1E+02 0.0023 17.0 2.5 24 20-43 15-38 (51)
87 PLN03088 SGT1, suppressor of 22.7 3.6E+02 0.0077 21.2 6.2 45 23-76 53-97 (356)
88 smart00299 CLH Clathrin heavy 22.5 1.5E+02 0.0033 19.4 3.6 28 54-81 87-117 (140)
89 PF08324 PUL: PUL domain; Int 22.5 52 0.0011 24.3 1.4 29 49-77 179-207 (268)
90 cd05804 StaR_like StaR_like; a 22.4 2.2E+02 0.0048 21.2 4.8 46 23-77 131-176 (355)
91 cd00189 TPR Tetratricopeptide 22.3 1.4E+02 0.003 15.9 5.3 24 52-76 38-61 (100)
92 KOG3430|consensus 22.3 75 0.0016 21.2 1.9 14 65-78 18-31 (90)
93 PF07719 TPR_2: Tetratricopept 22.0 1.1E+02 0.0024 14.6 3.5 23 54-77 7-29 (34)
94 PRK15344 type III secretion sy 22.0 75 0.0016 20.3 1.8 36 19-58 11-50 (71)
95 PLN00410 U5 snRNP protein, DIM 21.8 55 0.0012 23.1 1.3 25 73-98 11-35 (142)
96 PF03681 UPF0150: Uncharacteri 21.7 1.1E+02 0.0023 16.9 2.3 19 63-81 29-47 (48)
97 COG4390 Uncharacterized protei 21.7 1.5E+02 0.0034 20.0 3.4 40 6-46 45-84 (106)
98 PRK10803 tol-pal system protei 21.5 3.7E+02 0.0081 20.4 6.4 37 40-77 209-245 (263)
99 PF13428 TPR_14: Tetratricopep 21.4 1.5E+02 0.0032 15.8 2.9 20 59-78 11-30 (44)
100 TIGR02947 SigH_actino RNA poly 21.3 1.7E+02 0.0037 20.3 3.8 38 58-97 28-65 (193)
101 PF06242 DUF1013: Protein of u 21.3 41 0.00089 24.1 0.6 14 38-51 112-125 (140)
102 PRK12517 RNA polymerase sigma 21.2 1.5E+02 0.0032 20.9 3.4 37 59-97 41-77 (188)
103 PF13174 TPR_6: Tetratricopept 20.7 1.2E+02 0.0026 14.4 3.4 24 53-77 5-28 (33)
104 PRK12516 RNA polymerase sigma 20.5 1.5E+02 0.0032 20.9 3.3 28 57-84 26-53 (187)
105 PRK12530 RNA polymerase sigma 20.3 1.6E+02 0.0035 20.6 3.5 37 59-97 25-61 (189)
106 KOG1794|consensus 20.0 1E+02 0.0023 25.0 2.7 33 20-54 44-77 (336)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-41 Score=252.14 Aligned_cols=91 Identities=58% Similarity=0.966 Sum_probs=87.4
Q ss_pred CccccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 1 mKGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
||||||||+|||..|++++++.+.++++|+.|.++|..+|||||||||||+||||||||||+|++++||.|||+|||+||
T Consensus 125 MKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI 204 (268)
T COG5040 125 MKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAI 204 (268)
T ss_pred ecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhccccCCcc
Q psy11270 81 GASRVQILSVPRY 93 (98)
Q Consensus 81 ~~~d~~~~~~~~~ 93 (98)
+++| .+|...|
T Consensus 205 ~ELD--tLSEEsY 215 (268)
T COG5040 205 SELD--TLSEESY 215 (268)
T ss_pred HHHh--hhhhhhh
Confidence 9999 5655544
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=5.7e-40 Score=249.30 Aligned_cols=84 Identities=61% Similarity=0.937 Sum_probs=83.0
Q ss_pred CccccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 1 mKGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
||||||||+|||..|++|++++++|+++|++|+++|+.+|||||||||||+||||||||||++++++||+|||+|||+||
T Consensus 123 mKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 123 MKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred hcch
Q psy11270 81 GASR 84 (98)
Q Consensus 81 ~~~d 84 (98)
+++|
T Consensus 203 ~~ld 206 (244)
T smart00101 203 AELD 206 (244)
T ss_pred HHhh
Confidence 9998
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.9e-37 Score=232.23 Aligned_cols=85 Identities=54% Similarity=0.935 Sum_probs=82.2
Q ss_pred CccccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 1 mKGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
||||||||+|||..|++|++++++|.++|++|+++|+.+|||+||+||||+||||||+|||++++++||+||++|||+||
T Consensus 121 mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 121 MKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchh
Q psy11270 81 GASRV 85 (98)
Q Consensus 81 ~~~d~ 85 (98)
+++|+
T Consensus 201 ~~l~~ 205 (236)
T PF00244_consen 201 SELDT 205 (236)
T ss_dssp HGGGG
T ss_pred hhhcc
Confidence 99983
No 4
>KOG0841|consensus
Probab=100.00 E-value=1.9e-36 Score=229.55 Aligned_cols=85 Identities=65% Similarity=1.030 Sum_probs=83.9
Q ss_pred CccccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 1 mKGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
||||||||++||.+|++|++++++++++|+.|.++++..|+|||||||||+||||||||||+|.|++||.|||+|||+||
T Consensus 123 mKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai 202 (247)
T KOG0841|consen 123 MKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAI 202 (247)
T ss_pred ccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchh
Q psy11270 81 GASRV 85 (98)
Q Consensus 81 ~~~d~ 85 (98)
+++|+
T Consensus 203 ~eldt 207 (247)
T KOG0841|consen 203 AELDT 207 (247)
T ss_pred Hhhcc
Confidence 99995
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0015 Score=39.76 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
-++|.+.|++|+++ .+.+++.||...-...|.+..++. +++.++|++.-++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 56899999999999 678898888777777788888776 79999999999998763
No 6
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.40 E-value=0.11 Score=33.57 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=55.3
Q ss_pred cchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhh-hhHHHHHHHHhcChHHHHHHHHHHHHHHHhcc
Q psy11270 5 YYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA-LNFSVFYYEIINSPARACHLAKQVQYSCIGAS 83 (98)
Q Consensus 5 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~-LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~ 83 (98)
|.||+--+..+| ...|.+...+..+.+.....+.+...+..+ ||.+.+++. +|++++|+...++|++-|-..-
T Consensus 2 ~l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 2 YLRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 446665555554 456888888888888777766654455554 778887776 6999999999999998887766
Q ss_pred hhcc
Q psy11270 84 RVQI 87 (98)
Q Consensus 84 d~~~ 87 (98)
|...
T Consensus 76 D~~~ 79 (94)
T PF12862_consen 76 DRRC 79 (94)
T ss_pred CHHH
Confidence 6443
No 7
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.66 E-value=0.4 Score=25.11 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHP 45 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~P 45 (98)
.++|...+++++++.++.++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 567999999999999888999998
No 8
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.19 E-value=2.7 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhc-ChHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN-SPARACHLAKQVQY 77 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~-~~~~A~~iAk~Afd 77 (98)
-++|...|++|+++ +|-.-.+..|.++-+++ ++ ++++|++..++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 56799999999875 34445578888888776 56 78999988888764
No 9
>KOG1840|consensus
Probab=85.21 E-value=1.8 Score=36.58 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQ 76 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Af 76 (98)
..+|...|++|+.+-+..+.++||-.--..-|.||-|+. .++..+|-...+.|.
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHH
Confidence 456999999999999999999999888888889999987 477776655555543
No 10
>KOG1840|consensus
Probab=81.90 E-value=3.1 Score=35.17 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHhcch
Q psy11270 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 21 ~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d 84 (98)
-.+.+..-|++|+++....+.+-||.-=|+--|+++-|+- +|..++|.++.|+|+...-+..+
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccc
Confidence 3678999999999999888999999999999999888875 79999999999999887644443
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=81.19 E-value=3.5 Score=24.50 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=31.1
Q ss_pred CcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHhcchh
Q psy11270 44 HPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIGASRV 85 (98)
Q Consensus 44 ~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~ 85 (98)
||.......|.+..+++ +++.++|+..-++|++- .+.+.+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~~~ 40 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQLGD 40 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHTTT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHHCC
Confidence 67777888888888886 79999999999999887 555544
No 12
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.53 E-value=2 Score=22.77 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHH
Q psy11270 28 AYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 69 (98)
Q Consensus 28 aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~ 69 (98)
+|++|+++ .|.|| ....|++++++. .++.++|+
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhc
Confidence 47777763 34444 566788888876 68888886
No 13
>KOG4162|consensus
Probab=76.01 E-value=11 Score=33.80 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 14 TGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 14 ~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
..++|+..-.++.+++++|++ +.|+|| -...+.|++|= +.++.+.|...++.++.
T Consensus 452 ~~seR~~~h~kslqale~av~-----~d~~dp---~~if~lalq~A-~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQ-----FDPTDP---LVIFYLALQYA-EQRQLTSALDYAREALA 506 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 456888889999999999975 678999 33445566654 57888999988888753
No 14
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=73.37 E-value=7.6 Score=27.42 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHH-HHH--hcChHHHHHHHHHHHHHHHhcch
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFY-YEI--INSPARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~-SVF~-yEi--l~~~~~A~~iAk~Afd~Ai~~~d 84 (98)
.....+|.+++....+.+....|+.|...|.+ .||. -+- ....+..-.....++++|+..+.
T Consensus 81 ~~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~ 146 (159)
T PF03755_consen 81 EELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELI 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766678888889999999998 7777 321 11223345678888999888765
No 15
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=65.14 E-value=31 Score=23.54 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.+.|...|++|+.+ .|.++.......|.++.+. .+++.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 34667777777654 2333333335556665554 47999999998888764
No 16
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=61.57 E-value=25 Score=19.96 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
.+.|...|+++++. +|-...+.++++..+++ .|+.++|..+-++.
T Consensus 7 ~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 7 YDEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 45677888888753 34455556666777776 58988887776654
No 17
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.51 E-value=21 Score=26.64 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=38.3
Q ss_pred hhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCc--chhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHh
Q psy11270 9 LAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHP--IRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIG 81 (98)
Q Consensus 9 laE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~P--irLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~ 81 (98)
|+-|..|.+.++.++.|..-|++|+.+- |-.|- .-||.++--=-|+..-..+.+.=.+.|..-|+.|..
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~----P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN----PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 4556677788889999999999998763 22222 236666655445333222222334455555666655
No 18
>KOG1258|consensus
Probab=59.43 E-value=16 Score=31.57 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHhcchhccccCCcc
Q psy11270 16 DTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIGASRVQILSVPRY 93 (98)
Q Consensus 16 ~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~ 93 (98)
+.|.-.++++..-|+++++-. |.-+-|=++|-.|.-+.-++++. .+..|..|+...-.|++|+|-+
T Consensus 89 E~klg~~~~s~~Vfergv~ai--------p~SvdlW~~Y~~f~~n~~~d~~~----lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQAI--------PLSVDLWLSYLAFLKNNNGDPET----LRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred HHHhhhHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHhccCCCHHH----HHHHHHHHHHhcccchhccHHH
Confidence 445556889999999998643 56778888999999887777776 7899999999999999999843
No 19
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=57.85 E-value=34 Score=19.63 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
.++|.+.++.++.+ +|--..+.++.+..++. +++.++|++.-.++.+.
T Consensus 11 ~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 11 YEEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 34566666666653 55666777788888876 68888888777776643
No 20
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=56.62 E-value=15 Score=27.76 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
-+.|.++|++|..- .-+| ..++...||+-|||..||.
T Consensus 15 Ye~A~~~Ye~av~n---g~~~-----------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 15 YETARQAYEEAVAN---GSSP-----------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHC---T--H-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCH-----------------HHHHHHHHHHhHHHHHHhH
Confidence 56889999998762 1121 3467788999999999886
No 21
>KOG1173|consensus
Probab=56.42 E-value=11 Score=32.74 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHHHHHhcChHHHHHHHHHHHHHHHhcchhccccCCcccccc
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFYYEIINSPARACHLAKQVQYSCIGASRVQILSVPRYHTTW 97 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~-SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~~~~~ 97 (98)
...+.|...|.+|+.+ .|.+|+- +|. +|-.|+ .++..+|...=+++. +-|.+...+.- +||.+|
T Consensus 394 ~n~kLAe~Ff~~A~ai-----~P~Dplv----~~Elgvvay~-~~~y~~A~~~f~~~l-~~ik~~~~e~~---~w~p~~ 458 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-----APSDPLV----LHELGVVAYT-YEEYPEALKYFQKAL-EVIKSVLNEKI---FWEPTL 458 (611)
T ss_pred ccHHHHHHHHHHHHhc-----CCCcchh----hhhhhheeeh-HhhhHHHHHHHHHHH-HHhhhcccccc---chhHHH
Confidence 3466777777777654 3666643 343 555554 467778888888777 44555554432 565554
No 22
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=52.38 E-value=74 Score=21.81 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
.+.|...|++|+++. |.+|-..-..+|.++-++. +++.++|+...+++++.
T Consensus 51 ~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 51 YAEALENYEEALKLE-----EDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 446777777777653 2223223345666666655 79999998887777653
No 23
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=49.51 E-value=29 Score=24.28 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhh
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL 50 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL 50 (98)
+....|..+|+.+-+++ ..+|+.-||.+|=
T Consensus 20 ~a~~~s~~~~~~a~~~~-~~ip~GQPIlVGH 49 (126)
T PF12083_consen 20 KAAARSEAAYEAANRMA-EAIPFGQPILVGH 49 (126)
T ss_pred HHHHHHHHHHHHHHHHH-hccCCCCCeeccc
Confidence 34678889999999887 4799999999983
No 24
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.59 E-value=49 Score=18.65 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.+.|...|+++++ .+|-..-..+..+..++. .++.++|+..-+++.+
T Consensus 13 ~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 13 YDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 4566777776653 335566666667777774 7999999876666543
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=48.37 E-value=40 Score=30.72 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
.++|..+|++++++ .|.||. +||+=-++|... +.++|.+++++|+.-=|
T Consensus 132 ~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 132 NKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 56788999998863 477763 566555555555 99999999999976633
No 26
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=47.65 E-value=69 Score=25.21 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
+.|.+.|++|++ +.|.+| .+.+|.+..+.. +++.++|+..+++|++
T Consensus 19 ~~Ai~~~~~Al~-----~~P~~~---~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAID-----LDPNNA---ELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 356666666654 233333 334455544443 5666666666666543
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=47.51 E-value=47 Score=27.67 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.+.|...|++|+++... ..+.++.. ...+|.+..+|+-.++.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~-~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNV-LPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56788888888765421 22222222 22345555666666888888877776643
No 28
>KOG2002|consensus
Probab=46.64 E-value=87 Score=29.00 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHhcchhcc
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIGASRVQI 87 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~ 87 (98)
..++.+|+.|.++-...-. ||-.-+.-|-++.+|. ++++++|...-++|...+.+.++.|.
T Consensus 430 ~~sL~~~~~A~d~L~~~~~---~ip~E~LNNvaslhf~-~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGK---QIPPEVLNNVASLHFR-LGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCC---CCCHHHHHhHHHHHHH-hcChHHHHHHHHHHhhhhhhhcCccc
Confidence 3569999999987654433 4666777788999996 69998888888888777665566554
No 29
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=45.44 E-value=24 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHHHHhcchhc
Q psy11270 64 SPARACHLAKQVQYSCIGASRVQ 86 (98)
Q Consensus 64 ~~~~A~~iAk~Afd~Ai~~~d~~ 86 (98)
+.++++.+||+|+..|-+...+.
T Consensus 25 ~~q~~i~rAKnAlsSAyanss~a 47 (63)
T PF12758_consen 25 EQQKAIQRAKNALSSAYANSSDA 47 (63)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHH
Confidence 68899999999999998876543
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=44.91 E-value=70 Score=19.41 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 24 DSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 24 ~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
.|.+.|++++. +.|.+|......++.+..+.. +++.++|...-+++++.
T Consensus 57 ~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 57 DAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 45555555442 356766555555555555444 78888888887776665
No 31
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=44.58 E-value=26 Score=24.05 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=38.8
Q ss_pred ccccchhhhcccCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhH--HHHHHHHhcChHHHHHHHHHHH
Q psy11270 2 KGDYYRYLAEVATG-DTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF--SVFYYEIINSPARACHLAKQVQ 76 (98)
Q Consensus 2 KGDyyRYlaE~~~~-~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~--SVF~yEil~~~~~A~~iAk~Af 76 (98)
.|+-+..+|+...+ +-|......|.++|.++.. |+|.-+.-|=..-+- ||-+| +++..-||+++
T Consensus 39 QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-----Lsp~~A~~L~~la~~l~s~~~Y------kk~v~kak~~L 105 (111)
T PF04781_consen 39 QGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-----LSPDSAHSLFELASQLGSVKYY------KKAVKKAKRGL 105 (111)
T ss_pred HhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-----cChhHHHHHHHHHHHhhhHHHH------HHHHHHHHHHh
Confidence 47888888887654 4466678899999999975 444443333333333 33333 35555566553
No 32
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=43.97 E-value=8.4 Score=32.25 Aligned_cols=10 Identities=70% Similarity=1.401 Sum_probs=8.9
Q ss_pred ccCCcccccc
Q psy11270 88 LSVPRYHTTW 97 (98)
Q Consensus 88 ~~~~~~~~~~ 97 (98)
=||||+|.||
T Consensus 136 NSVPRFHiTW 145 (552)
T COG3573 136 NSVPRFHITW 145 (552)
T ss_pred CCCcceEEee
Confidence 4799999999
No 33
>KOG0553|consensus
Probab=43.60 E-value=45 Score=26.73 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 24 DSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 24 ~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
.|.+.|.+|+ .|-|+|||... |-+-=|- -|+..+.|++=+++|
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHH
Confidence 5566666665 58899998643 2222222 256666666666655
No 34
>KOG1126|consensus
Probab=43.11 E-value=53 Score=28.87 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=42.3
Q ss_pred cccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 3 GDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 3 GDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
+++||=+--...---|++=-+.|+-.+++|++ .||.-.-++--.++++.. ++..++|+++-++|
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKA 549 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHH
Confidence 45555554444333445556677777777765 466666666667777766 68888888888777
No 35
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=42.36 E-value=28 Score=23.32 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=28.0
Q ss_pred cChHHHHHHHHHHHHHH------------HhcchhccccCCcccccc
Q psy11270 63 NSPARACHLAKQVQYSC------------IGASRVQILSVPRYHTTW 97 (98)
Q Consensus 63 ~~~~~A~~iAk~Afd~A------------i~~~d~~~~~~~~~~~~~ 97 (98)
.+.+.|++-.+.|+++- .+-+++..|...++||.|
T Consensus 59 ~~R~~Ai~~l~~AL~e~~I~Gv~TNi~fl~~ll~~~~f~~g~~~T~~ 105 (107)
T PF02785_consen 59 PDREEAIARLRRALAETVIEGVKTNIPFLRALLAHPEFRSGTYDTGF 105 (107)
T ss_dssp SSHHHHHHHHHHHHHHHEEESSSHSHHHHHHHHTSHHHHTT-SSTTH
T ss_pred cchHHHHHHHHhhcceEEEECccCCHHHHHHHhCCcccccCCCeeec
Confidence 47889999999998883 456778889999999987
No 36
>KOG1679|consensus
Probab=42.35 E-value=22 Score=27.85 Aligned_cols=19 Identities=42% Similarity=0.835 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCCCCcc
Q psy11270 27 KAYQEAFDIAKSKMQPTHPI 46 (98)
Q Consensus 27 ~aY~~A~~~A~~~L~pt~Pi 46 (98)
.+|++|+++|++ +-|--||
T Consensus 218 aa~~kal~lA~e-ilp~gPi 236 (291)
T KOG1679|consen 218 AAYQKALELARE-ILPQGPI 236 (291)
T ss_pred HHHHHHHHHHHH-hccCCch
Confidence 799999999975 4444554
No 37
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=42.15 E-value=37 Score=17.62 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11270 22 VEDSQKAYQEAFDIAKS 38 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~ 38 (98)
-++|.+.|++|+.++..
T Consensus 15 ~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 15 YEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc
Confidence 56899999999887754
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=41.41 E-value=1.1e+02 Score=20.70 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHH------HhcChHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE------IINSPARACHLAKQVQ 76 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yE------il~~~~~A~~iAk~Af 76 (98)
.+.|...|++|+.+ . |-......|.++.++. -+++.+.|....++|+
T Consensus 88 ~~eA~~~~~~Al~~-----~---~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 88 HTKALEYYFQALER-----N---PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHh-----C---cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 45677777777754 2 3333444455555552 3677777766655543
No 39
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=41.37 E-value=45 Score=20.02 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=6.2
Q ss_pred hcChHHHHHHHHH
Q psy11270 62 INSPARACHLAKQ 74 (98)
Q Consensus 62 l~~~~~A~~iAk~ 74 (98)
.++.++|+.+.++
T Consensus 38 ~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 38 QGKYEEAIELLQK 50 (84)
T ss_dssp TTHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH
Confidence 3445555555443
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.58 E-value=62 Score=25.30 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
.+.|.+.|++|+.++ |-+=-+.-||..|++.- +.+++|...=.+|
T Consensus 85 ~~~A~e~YrkAlsl~--------p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~A 129 (250)
T COG3063 85 NDLADESYRKALSLA--------PNNGDVLNNYGAFLCAQ-GRPEEAMQQFERA 129 (250)
T ss_pred hhhHHHHHHHHHhcC--------CCccchhhhhhHHHHhC-CChHHHHHHHHHH
Confidence 568999999998643 44445566799999995 5888886654444
No 41
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.15 E-value=1e+02 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----------CCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQP----------THPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSC 79 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~p----------t~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~A 79 (98)
+....+.|.+++..-...... +.-..|-+.+++.+|..+ .|-.+.|+.+.|..++-.
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHH
Confidence 556777888887765433332 356778899999999998 699999999998776543
No 42
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.58 E-value=1.2e+02 Score=20.51 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
-++|...|++|++ ..|+ .+.|-+..++.+--+- .+|.+++|+.+-+++..+
T Consensus 17 ~~~Ai~~Y~~Al~---~gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 17 EEEAIPLYRRALA---AGLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHH---cCCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 3578899999975 2344 4555555556543333 589999999988876543
No 43
>PHA02103 hypothetical protein
Probab=39.36 E-value=9.3 Score=26.69 Aligned_cols=13 Identities=62% Similarity=1.135 Sum_probs=9.8
Q ss_pred cccchhhhcccCC
Q psy11270 3 GDYYRYLAEVATG 15 (98)
Q Consensus 3 GDyyRYlaE~~~~ 15 (98)
-|||||.+|-..|
T Consensus 79 pdyyryf~ee~e~ 91 (135)
T PHA02103 79 PDYYRYFGEEAEG 91 (135)
T ss_pred hHHHHHhcccchh
Confidence 3899999985443
No 44
>KOG0687|consensus
Probab=38.73 E-value=1.6e+02 Score=24.36 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=50.4
Q ss_pred cccchhhhcccC---CcchhHH----HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 3 GDYYRYLAEVAT---GDTRNAV----VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 3 GDyyRYlaE~~~---~~~~~~~----~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
+++|.||||-.. +.++-.. -+.=.+-..++++-|++++. -+-+| -..+|-+-||-.| +|++.|.+.-+++
T Consensus 54 ap~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlG-E~ev~-ea~~~kaeYycqi-gDkena~~~~~~t 130 (393)
T KOG0687|consen 54 APLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLG-ESEVR-EAMLRKAEYYCQI-GDKENALEALRKT 130 (393)
T ss_pred chHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hHHHH-HHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 579999999432 2222222 22233445666777766644 33443 3467888888876 8999999999999
Q ss_pred HHHHHh
Q psy11270 76 QYSCIG 81 (98)
Q Consensus 76 fd~Ai~ 81 (98)
++++++
T Consensus 131 ~~ktvs 136 (393)
T KOG0687|consen 131 YEKTVS 136 (393)
T ss_pred HHHHhh
Confidence 999886
No 45
>PHA02942 putative transposase; Provisional
Probab=38.56 E-value=1.1e+02 Score=24.76 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhh-HHHHHHHHhcChHHHHHHHHHHHHHHHhc
Q psy11270 14 TGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN-FSVFYYEIINSPARACHLAKQVQYSCIGA 82 (98)
Q Consensus 14 ~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN-~SVF~yEil~~~~~A~~iAk~Afd~Ai~~ 82 (98)
..++..+.+.....+|+.|.....+.....+- ++-... ..++|.++.....-+-++|++++.++.+.
T Consensus 19 ~~~~~~~~l~~~~~~~~~A~n~i~~~~~~~~~--~~~~~~l~~~~Y~~Lre~~~l~s~~a~~~~r~~~~a 86 (383)
T PHA02942 19 LSDSLLAFVNNYVKALRFSIFWMKENVKNPNE--KGALSKVHEGLYEKLKEDYNLPPKVSADCYRDALAI 86 (383)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45678889999999999999888766655443 232111 35666676555555566666666665543
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=38.18 E-value=11 Score=27.91 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred ccchhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 4 DYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 4 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
+|+|.++.....-. -.+.|.++|++.+.+. +. ..+...++..++ ..+++++|.+++.++|+.
T Consensus 45 ~~~~~~a~La~~~~---~~~~A~~ay~~l~~~~-----~~---~~~~~~~l~~l~--~~~~~~~A~~~~~~~~~~ 106 (280)
T PF13429_consen 45 EYWRLLADLAWSLG---DYDEAIEAYEKLLASD-----KA---NPQDYERLIQLL--QDGDPEEALKLAEKAYER 106 (280)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccccccccccccc---cccccccccccccccc-----cc---cccccccccccc--cccccccccccccccccc
Confidence 46666666543221 1446777777776432 22 222223332221 357788888888877654
No 47
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=38.01 E-value=21 Score=31.56 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhh-hhhHHHHHHHH
Q psy11270 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEI 61 (98)
Q Consensus 21 ~~~~a~~aY~~A~~~A~~~L~pt~PirLgL-~LN~SVF~yEi 61 (98)
--++.++|-|+|+.+|...+.|.-.+-|=+ +||..+|+|+-
T Consensus 700 d~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 700 DGKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp -HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 367899999999999998888654444444 89999999963
No 48
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=37.77 E-value=1.3e+02 Score=20.56 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred hcChHHHHHHHHHHHHHHHhcchhcccc-CCcccc
Q psy11270 62 INSPARACHLAKQVQYSCIGASRVQILS-VPRYHT 95 (98)
Q Consensus 62 l~~~~~A~~iAk~Afd~Ai~~~d~~~~~-~~~~~~ 95 (98)
.|+...||..|+||.+.++..+=-.... -|+.|.
T Consensus 26 ~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~ 60 (132)
T COG2250 26 LGDYDLACFHAQQAVELALKALLIRLGGEPPKTHS 60 (132)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCC
Confidence 5788888999999988887755433333 566663
No 49
>KOG2002|consensus
Probab=35.96 E-value=84 Score=29.10 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHh--cCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy11270 27 KAYQEAFDIAKS--KMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSCI 80 (98)
Q Consensus 27 ~aY~~A~~~A~~--~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai 80 (98)
++|+.|+.+-.. ...+.||.-|.+.-|+=+| .++.+.++.+|..|+...+
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhh
Confidence 556666665433 5788999998888887666 6889999999998877763
No 50
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.17 E-value=1.9e+02 Score=21.44 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH---HHHHHhcch
Q psy11270 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV---QYSCIGASR 84 (98)
Q Consensus 21 ~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A---fd~Ai~~~d 84 (98)
..+.|.++|+-|+-.++ +....|..+|...=-...+|.-+++.+.....-++| |.+|+...+
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 37789999999998874 344445455444444557778788877666655555 555555444
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=34.73 E-value=1.4e+02 Score=21.34 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcC--hHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINS--PARACHLAKQVQ 76 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~--~~~A~~iAk~Af 76 (98)
.+.|..+|++|+.+ .|.+ ..+.++++.-+|...++ .++|.++.+++.
T Consensus 89 ~~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 89 YDNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45677777777653 3333 33335555433323344 366666666553
No 52
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=34.30 E-value=51 Score=24.62 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHHHHHhcChHHHHHHHHHHHHHHHhcchhccccCCcccc
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFYYEIINSPARACHLAKQVQYSCIGASRVQILSVPRYHT 95 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~-SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~~~ 95 (98)
-.-+.|.+.|+.++. ++.+.+-+=+|+|++|-- |-| +...++.+ -+++||+.++--..=+|.+|.
T Consensus 5 ~~FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqf-----k~g~es~~----miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 5 LFFEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQF-----KQGPESKK----MIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH-----S-HHHHHH----HHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhc-----cCcchHHH----HHHHHHHHHHHHHhcCCchHH
Confidence 344555666655543 334445556889998763 555 33334433 344455555544445677764
No 53
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=58 Score=26.76 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHh
Q psy11270 48 LGLALNFSVFYYEIINSPARACHLAKQVQYSCIG 81 (98)
Q Consensus 48 LgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~ 81 (98)
+...-|-+=||-+| .|.+.+.+.-.+.+.+|+.
T Consensus 115 ~ea~~n~aeyY~qi-~D~~ng~~~~~~~~~~a~s 147 (412)
T COG5187 115 SEADRNIAEYYCQI-MDIQNGFEWMRRLMRDAMS 147 (412)
T ss_pred HHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHh
Confidence 55677888888886 6789999999999999986
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=33.47 E-value=1.3e+02 Score=19.09 Aligned_cols=33 Identities=9% Similarity=-0.031 Sum_probs=21.2
Q ss_pred cchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 45 PIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 45 PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
|--....++.+..+. ..++.++|+..-++++.-
T Consensus 82 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 333444566666444 578988888877776553
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=33.10 E-value=1.3e+02 Score=25.07 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHHHHHhcChHHHHHHHHHHHH
Q psy11270 24 DSQKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 24 ~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~-SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.|..+|+++++.. +.+| ....+++. ..+++ .+++.++|+...+++++
T Consensus 312 ~A~~~~~~al~~~-----~~~~-~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 312 EAARAFEKALDLG-----KLGE-KEAIALNLRGTFKC-LKGKHLEALADLSKSIE 359 (615)
T ss_pred HHHHHHHHHHhcC-----CCCh-hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4445555554422 2344 33344444 44444 47888888877776643
No 56
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=32.93 E-value=46 Score=21.31 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHHHHHHHHh-cCCCCCcchhhhhhhHHHHH
Q psy11270 29 YQEAFDIAKS-KMQPTHPIRLGLALNFSVFY 58 (98)
Q Consensus 29 Y~~A~~~A~~-~L~pt~PirLgL~LN~SVF~ 58 (98)
++.|-++|.+ .+++.+|-|+.-++-+.+..
T Consensus 56 F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 56 FKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 5666677754 67888899988888776543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=32.41 E-value=1.5e+02 Score=19.55 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=7.5
Q ss_pred hcChHHHHHHHHHHH
Q psy11270 62 INSPARACHLAKQVQ 76 (98)
Q Consensus 62 l~~~~~A~~iAk~Af 76 (98)
.++.++|.+..++++
T Consensus 78 ~~~~~~A~~~~~~al 92 (234)
T TIGR02521 78 LGELEKAEDSFRRAL 92 (234)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555544443
No 58
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=31.99 E-value=39 Score=30.05 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.1
Q ss_pred HHHHHH-----HhcChHHHHHHHHHHHHHHHhcch
Q psy11270 55 SVFYYE-----IINSPARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 55 SVF~yE-----il~~~~~A~~iAk~Afd~Ai~~~d 84 (98)
|.||-. ++.-..-|.++|.+|+++||+..+
T Consensus 25 StFYrQsEgHSM~dTl~VALRVAEEAIeEAIsKAE 59 (714)
T PF04698_consen 25 STFYRQSEGHSMADTLAVALRVAEEAIEEAISKAE 59 (714)
T ss_pred chhhhccccchHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 567655 566677899999999999998665
No 59
>KOG1941|consensus
Probab=31.52 E-value=1.4e+02 Score=25.32 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Q psy11270 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYSC 79 (98)
Q Consensus 21 ~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~A 79 (98)
..+++++.++.|+.+|.+.=.|.=- |.+-...+-| |-.++|.+||.-.+.+|++-.
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LE--lqvcv~Lgsl-f~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLE--LQVCVSLGSL-FAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceee--eehhhhHHHH-HHHHHhhhHHhhhhHhHHHHH
Confidence 3679999999999999764444333 3333333333 345899999999999998753
No 60
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=31.51 E-value=10 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcchhccccCCccccccC
Q psy11270 70 HLAKQVQYSCIGASRVQILSVPRYHTTWC 98 (98)
Q Consensus 70 ~iAk~Afd~Ai~~~d~~~~~~~~~~~~~~ 98 (98)
++.+..|++++.-.....+..=-++.+||
T Consensus 13 ~l~~~~f~~~~~v~~~~~~vlV~FyA~WC 41 (113)
T cd03006 13 DFYKGQLDYAEELRTDAEVSLVMYYAPWD 41 (113)
T ss_pred EechhhhHHHHhcccCCCEEEEEEECCCC
Confidence 34466677776655556667777888898
No 61
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.96 E-value=1.5e+02 Score=22.24 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcC-------------hHHHHHHHHHHHHHHHhcch
Q psy11270 18 RNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINS-------------PARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 18 ~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~-------------~~~A~~iAk~Afd~Ai~~~d 84 (98)
|+++.+.-..--+..+++....|-|... ..---|||+.+.+| ..++.+-|++||++|+....
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~-----~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSAT-----SPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS------SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 4555666666777788888777766532 22345676665332 35789999999999998777
Q ss_pred hc
Q psy11270 85 VQ 86 (98)
Q Consensus 85 ~~ 86 (98)
..
T Consensus 158 ~~ 159 (236)
T PF00244_consen 158 KE 159 (236)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=30.76 E-value=1.6e+02 Score=24.46 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=7.4
Q ss_pred hcChHHHHHHHHHH
Q psy11270 62 INSPARACHLAKQV 75 (98)
Q Consensus 62 l~~~~~A~~iAk~A 75 (98)
.+++++|+...++|
T Consensus 385 ~G~~~eAi~~~~~A 398 (553)
T PRK12370 385 AGQLEEALQTINEC 398 (553)
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555544
No 63
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.97 E-value=15 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.8
Q ss_pred chhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHhcchhccc
Q psy11270 46 IRLGLALNFSVFYYEIINSPARACHLAKQVQYSCIGASRVQIL 88 (98)
Q Consensus 46 irLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~ 88 (98)
-..||.|...||.- .+.+-|.+|||..+-.+.....-+-+
T Consensus 69 aLVgl~l~mkVFNa---es~EHA~RIAK~eIGk~L~~iPL~vv 108 (115)
T COG1885 69 ALVGLILSMKVFNA---ESDEHAERIAKAEIGKALKDIPLEVV 108 (115)
T ss_pred eeEEEEEEEEEecC---CCHHHHHHHHHHHHhhHhhcCCceEE
Confidence 35789999999954 68999999999999888876654433
No 64
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=29.78 E-value=45 Score=24.05 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=20.6
Q ss_pred HHHHHHHhcC----hH-HHHHHHHHHHHHHHh
Q psy11270 55 SVFYYEIINS----PA-RACHLAKQVQYSCIG 81 (98)
Q Consensus 55 SVF~yEil~~----~~-~A~~iAk~Afd~Ai~ 81 (98)
|.|-+-+|.+ ++ +|.++|++|+..|+.
T Consensus 127 s~~a~g~ld~~y~~~~meA~~la~kai~~A~~ 158 (172)
T PRK05456 127 GNYALAAARALLENTDLSAEEIAEKALKIAAD 158 (172)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Confidence 6677777633 33 899999999999875
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=29.66 E-value=2e+02 Score=24.43 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=45.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCC------CCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 15 GDTRNAVVEDSQKAYQEAFDIAKSKMQ------PTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 15 ~~~~~~~~~~a~~aY~~A~~~A~~~L~------pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
+.+|..+++.-...|...++... .++ ...|.-+-.++.|-.-+|+.+++.++|++...+|++
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34566778877777777665432 233 235777788888888889999999999998887654
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=28.92 E-value=1.8e+02 Score=26.67 Aligned_cols=44 Identities=7% Similarity=0.242 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHH
Q psy11270 24 DSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQ 76 (98)
Q Consensus 24 ~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Af 76 (98)
.|..+|++|++ +.|.+| .+..|.+.++.+ .++.++|+.+.++|+
T Consensus 627 eA~~~l~~AL~-----l~Pd~~---~a~~nLG~aL~~-~G~~eeAi~~l~~AL 670 (987)
T PRK09782 627 AAVSDLRAALE-----LEPNNS---NYQAALGYALWD-SGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 34444544443 345555 455666766665 577777777666554
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.80 E-value=1.9e+02 Score=19.48 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.+.|..+|++|+. +.|.+|.- ..|.++-+ .-++++++|+...++|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~a---~~~lg~~l-~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPEP---VYQTGVCL-KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcHH---HHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence 4567777777764 44555422 22222222 247999998877776654
No 68
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=28.56 E-value=65 Score=22.43 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=26.1
Q ss_pred chhhhhhhH-HHHHHHHhcChHH--HHHHHHHHHHHHHh
Q psy11270 46 IRLGLALNF-SVFYYEIINSPAR--ACHLAKQVQYSCIG 81 (98)
Q Consensus 46 irLgL~LN~-SVF~yEil~~~~~--A~~iAk~Afd~Ai~ 81 (98)
+||-=+|+| .+|+-.+..+++. -..++++||++..+
T Consensus 79 LwL~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~ 117 (149)
T PF08718_consen 79 LWLHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLA 117 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 456678998 6777777776554 57899999998754
No 69
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=28.40 E-value=71 Score=17.57 Aligned_cols=35 Identities=23% Similarity=0.532 Sum_probs=24.2
Q ss_pred chhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy11270 6 YRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPT 43 (98)
Q Consensus 6 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt 43 (98)
|-=|.|+.-.+++ -+.|.+=|++++++=++.+||.
T Consensus 4 ~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 4 YDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 4446666554443 5678888999999987777763
No 70
>PRK11820 hypothetical protein; Provisional
Probab=27.42 E-value=85 Score=24.61 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHHHHHhcChHHHHHHHHHHHHHHHhcch
Q psy11270 26 QKAYQEAFDIAKSKMQPTHPIRLGLALNF-SVFYYEIINSPARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 26 ~~aY~~A~~~A~~~L~pt~PirLgL~LN~-SVF~yEil~~~~~A~~iAk~Afd~Ai~~~d 84 (98)
..+|-+++......++...|+.|.-.|.+ .|+.. -..+.+..-....+|+++|+..+.
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~~-~~~~~~~~~~~l~~al~~AL~~l~ 143 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLEA-EEEDLEALWAALLAALDEALDDLI 143 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCcccC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 46666666544456644459999988887 45332 223555556688899999988765
No 71
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=27.41 E-value=66 Score=19.04 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q psy11270 66 ARACHLAKQVQYSC 79 (98)
Q Consensus 66 ~~A~~iAk~Afd~A 79 (98)
++|.+|||+|+.+.
T Consensus 12 e~aa~iAk~A~~~g 25 (55)
T PF10415_consen 12 EKAAEIAKEALAEG 25 (55)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999998763
No 72
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=27.40 E-value=25 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcchhccccCCccccccC
Q psy11270 68 ACHLAKQVQYSCIGASRVQILSVPRYHTTWC 98 (98)
Q Consensus 68 A~~iAk~Afd~Ai~~~d~~~~~~~~~~~~~~ 98 (98)
...+..+.|++.+.... +-.-+=.++++||
T Consensus 30 v~~l~~~~f~~~l~~~~-~~~vvV~Fya~wC 59 (152)
T cd02962 30 IKYFTPKTLEEELERDK-RVTWLVEFFTTWS 59 (152)
T ss_pred cEEcCHHHHHHHHHhcC-CCEEEEEEECCCC
Confidence 34455566777664422 1222335777787
No 73
>KOG1107|consensus
Probab=27.36 E-value=1.1e+02 Score=27.56 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhh-hhhHHHHHHHHhc
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEIIN 63 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL-~LN~SVF~yEil~ 63 (98)
+--++-.+|.++|+.+|+..+.|+-++-|-+ +||-=+|+||--+
T Consensus 654 ~dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 654 KDGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 3456789999999999999999998888755 8999999999433
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.08 E-value=2.6e+02 Score=21.13 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHH
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 75 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~A 75 (98)
+.|.++|++|++ +.|.++. ..+|.++-++. .++.++|++..+++
T Consensus 115 ~~A~~~~~~Al~-----l~P~~~~---a~~~lg~~l~~-~g~~~eA~~~~~~a 158 (296)
T PRK11189 115 DAAYEAFDSVLE-----LDPTYNY---AYLNRGIALYY-GGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 355556666654 3344432 22333433333 35555555444443
No 75
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=27.02 E-value=79 Score=16.09 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHhcChHHHHHHHH
Q psy11270 58 YYEIINSPARACHLAK 73 (98)
Q Consensus 58 ~yEil~~~~~A~~iAk 73 (98)
--..|++++-|.+||.
T Consensus 8 i~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 8 ILNTLQNPDLALRLAS 23 (24)
T ss_dssp HHHTT--HHHHHHHHH
T ss_pred HHhccCCHHHHHHHhc
Confidence 3456889999999885
No 76
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.99 E-value=62 Score=20.54 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=10.1
Q ss_pred ChHHHHHHHHHHHHH
Q psy11270 64 SPARACHLAKQVQYS 78 (98)
Q Consensus 64 ~~~~A~~iAk~Afd~ 78 (98)
+.++|+.++++|+++
T Consensus 2 ~l~kai~Lv~~A~~e 16 (75)
T cd02680 2 DLERAHFLVTQAFDE 16 (75)
T ss_pred CHHHHHHHHHHHHHh
Confidence 356788888877543
No 77
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=26.51 E-value=24 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcchhccccCCccccccC
Q psy11270 71 LAKQVQYSCIGASRVQILSVPRYHTTWC 98 (98)
Q Consensus 71 iAk~Afd~Ai~~~d~~~~~~~~~~~~~~ 98 (98)
+..+.|+..+...+.+-.-.=-++++||
T Consensus 6 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC 33 (109)
T cd02993 6 LSRAEIEALAKGERRNQSTLVVLYAPWC 33 (109)
T ss_pred ccHHHHHHHHhhhhcCCCEEEEEECCCC
Confidence 4455666655544333333445778887
No 78
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=26.32 E-value=1.6e+02 Score=17.93 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHH--HHHHHHHhcc
Q psy11270 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK--QVQYSCIGAS 83 (98)
Q Consensus 21 ~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk--~Afd~Ai~~~ 83 (98)
..+.=++-|++|...|+. -||.++|.+.-+ +.|+++|...
T Consensus 3 ~L~~R~~~yk~Aa~~AK~-----------------------~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 3 LLQQRQEQYKQAALQAKR-----------------------AGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHhhHHHHHHHH
Confidence 345556778888888875 688999988877 5688888754
No 79
>PRK04841 transcriptional regulator MalT; Provisional
Probab=26.20 E-value=3.3e+02 Score=23.46 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 22 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 22 ~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
.+.|...+++|++++...-.+.+|....+..+.+.-+++ .++.++|.....++.+-
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE-WARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHh
Confidence 457788888888888654344445444344455666666 49999998888877664
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.67 E-value=2.4e+02 Score=19.78 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 24 DSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 24 ~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.|...|++++ .+.|.+|...-..++.+.-++. .++.++|+...++++.
T Consensus 51 ~A~~~~~~~~-----~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 51 EAIKYFEALE-----SRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHH-----HhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3444444443 3456777443333444444443 6899998888887654
No 81
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=25.32 E-value=2.7e+02 Score=21.29 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHH-HhcCCCCCcchhhhhhhHHHHHHHH
Q psy11270 26 QKAYQEAFDIA-KSKMQPTHPIRLGLALNFSVFYYEI 61 (98)
Q Consensus 26 ~~aY~~A~~~A-~~~L~pt~PirLgL~LN~SVF~yEi 61 (98)
...|-++++.- ...|+..+|=-=.--||||||.-|+
T Consensus 39 e~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel 75 (213)
T cd07640 39 EEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREV 75 (213)
T ss_pred HHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Confidence 34566666643 4456655554434469999999995
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=24.55 E-value=3e+02 Score=20.54 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd~ 78 (98)
++|.++|.+|.+.-.+ ..+|..-+-++.-+.-.|.-. ++++|+...++|.+-
T Consensus 52 ~~A~~ay~kAa~~~~~---~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~ 103 (282)
T PF14938_consen 52 EKAAEAYEKAADCYEK---LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI 103 (282)
T ss_dssp HHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH
Confidence 4788888888776543 334555566655565556543 888888888877653
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.51 E-value=2.9e+02 Score=20.36 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHH
Q psy11270 16 DTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 74 (98)
Q Consensus 16 ~~~~~~~~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~ 74 (98)
+.-+....+|.+.|++|++.- ..|.+.--.+.+..=-+-..+. +|+.++|.+.-.+
T Consensus 135 ~~E~~fl~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~ 190 (214)
T PF09986_consen 135 ENEKRFLRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 344568999999999999853 2332221122232222333333 6888877654443
No 84
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.86 E-value=69 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.0
Q ss_pred chhhhcccCCcchhHHHHHHHHHHHHHHHHHH
Q psy11270 6 YRYLAEVATGDTRNAVVEDSQKAYQEAFDIAK 37 (98)
Q Consensus 6 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~ 37 (98)
||-+|...+.+-|+++-..-+++|+++++...
T Consensus 57 y~DI~~Pit~e~Re~i~~aVl~aY~~~~~~~~ 88 (94)
T PRK13259 57 FRDIAHPINSDTREKIQDAILKEYERVGEEEE 88 (94)
T ss_pred EEEEEccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67777777778899999999999999988654
No 85
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=23.46 E-value=1.1e+02 Score=14.88 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=13.3
Q ss_pred HHhcChHHHHHHHHHHHH
Q psy11270 60 EIINSPARACHLAKQVQY 77 (98)
Q Consensus 60 Eil~~~~~A~~iAk~Afd 77 (98)
.-+++.++|...-+++++
T Consensus 12 ~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 12 EQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 348998888877777654
No 86
>PF07554 FIVAR: Uncharacterised Sugar-binding Domain; InterPro: IPR011490 This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin. This is further evidenced by []. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as IPR007781 from INTERPRO further supports this proposal. It is found in the C-terminal part of O82833 from SWISSPROT, which is removed during maturation []. The name FIVAR derives from Found In Various Architectures.; PDB: 1XVH_B 2OZN_B 2JNK_A 2DGJ_A.
Probab=23.25 E-value=1e+02 Score=16.95 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPT 43 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt 43 (98)
.....+..+|+.|+..|+.-|.+.
T Consensus 15 ~~~~~~~~~y~~Al~~A~~vl~~~ 38 (51)
T PF07554_consen 15 NATPESKAAYDNALNAAKAVLNNT 38 (51)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHCCT
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCC
Confidence 345678999999999998877664
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=22.68 E-value=3.6e+02 Score=21.18 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHH
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQ 76 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Af 76 (98)
+.|...+++|++ +.|.+| ...++.++-++. +++.+.|+...++++
T Consensus 53 ~eAl~~~~~Al~-----l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 53 TEAVADANKAIE-----LDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHHHH-----hCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 345555555554 344443 334455555554 688888888777764
No 88
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.51 E-value=1.5e+02 Score=19.36 Aligned_cols=28 Identities=14% Similarity=-0.111 Sum_probs=21.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHH---HHHHHh
Q psy11270 54 FSVFYYEIINSPARACHLAKQV---QYSCIG 81 (98)
Q Consensus 54 ~SVF~yEil~~~~~A~~iAk~A---fd~Ai~ 81 (98)
-+||.|.-+++.++|+.++-+. ++.|+.
T Consensus 87 ~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~ 117 (140)
T smart00299 87 EAVELYKKDGNFKDAIVTLIEHLGNYEKAIE 117 (140)
T ss_pred HHHHHHHhhcCHHHHHHHHHHcccCHHHHHH
Confidence 5899999999999999888654 555554
No 89
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.50 E-value=52 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 49 GLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 49 gL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.|++|+||+..+...+.+...++.....+
T Consensus 179 Tl~~Nlsv~~~~~~~~~~~~~~ll~~i~~ 207 (268)
T PF08324_consen 179 TLLLNLSVLLHKNRSDEEWQSELLSSIIE 207 (268)
T ss_dssp HHHHHHHHHHHHCTS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 46899999999866455555555544333
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=22.43 E-value=2.2e+02 Score=21.19 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 23 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 23 ~~a~~aY~~A~~~A~~~L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
+.|...++++++ +.|.+| ....+.+..+|+ .|+.++|+...+++.+
T Consensus 131 ~~A~~~~~~al~-----~~p~~~---~~~~~la~i~~~-~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 131 DRAEEAARRALE-----LNPDDA---WAVHAVAHVLEM-QGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHh-----hCCCCc---HHHHHHHHHHHH-cCCHHHHHHHHHhhhh
Confidence 345555555554 344443 234455666666 6778887777666543
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=22.28 E-value=1.4e+02 Score=15.85 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhcChHHHHHHHHHHH
Q psy11270 52 LNFSVFYYEIINSPARACHLAKQVQ 76 (98)
Q Consensus 52 LN~SVF~yEil~~~~~A~~iAk~Af 76 (98)
++.+..+.. .++.++|+..-+++.
T Consensus 38 ~~~~~~~~~-~~~~~~a~~~~~~~~ 61 (100)
T cd00189 38 YNLAAAYYK-LGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344444443 366666666555543
No 92
>KOG3430|consensus
Probab=22.27 E-value=75 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHH
Q psy11270 65 PARACHLAKQVQYS 78 (98)
Q Consensus 65 ~~~A~~iAk~Afd~ 78 (98)
.++|+++|++|++.
T Consensus 18 q~~a~~~a~~al~~ 31 (90)
T KOG3430|consen 18 QQEAIELARQALEK 31 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 34667777766554
No 93
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=22.02 E-value=1.1e+02 Score=14.62 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=14.6
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 54 FSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 54 ~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.+..++. +++.++|++.-++++.
T Consensus 7 lg~~~~~-~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 7 LGQAYYQ-LGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHH
Confidence 3444444 7888888887777654
No 94
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=21.96 E-value=75 Score=20.26 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCc---chhhhhhh-HHHHH
Q psy11270 19 NAVVEDSQKAYQEAFDIAKSKMQPTHP---IRLGLALN-FSVFY 58 (98)
Q Consensus 19 ~~~~~~a~~aY~~A~~~A~~~L~pt~P---irLgL~LN-~SVF~ 58 (98)
++.+.++-+.++.++.- -.|.|| +.|..++| ||+|+
T Consensus 11 ~~~~~~~~q~vq~~m~a----~~~~nP~~ml~lQf~i~QyS~~~ 50 (71)
T PRK15344 11 SHMAHQAGQAINDKMNG----NDLLNPESMIKAQFALQQYSTFI 50 (71)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 44566677777777652 344455 45666777 68875
No 95
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=21.81 E-value=55 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.7
Q ss_pred HHHHHHHHhcchhccccCCccccccC
Q psy11270 73 KQVQYSCIGASRVQILSVPRYHTTWC 98 (98)
Q Consensus 73 k~Afd~Ai~~~d~~~~~~~~~~~~~~ 98 (98)
+..|+++|.+.. +-+-+-+++.+||
T Consensus 11 ~~e~d~~I~~~~-~~lVVvdF~A~WC 35 (142)
T PLN00410 11 GWAVDQAILAEE-ERLVVIRFGHDWD 35 (142)
T ss_pred HHHHHHHHHhcC-CCEEEEEEECCCC
Confidence 678999997543 4577789999999
No 96
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=21.72 E-value=1.1e+02 Score=16.91 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=14.5
Q ss_pred cChHHHHHHHHHHHHHHHh
Q psy11270 63 NSPARACHLAKQVQYSCIG 81 (98)
Q Consensus 63 ~~~~~A~~iAk~Afd~Ai~ 81 (98)
.+.++|++.++.|+...|.
T Consensus 29 ~t~eea~~~~~eal~~~le 47 (48)
T PF03681_consen 29 DTLEEALENAKEALELWLE 47 (48)
T ss_dssp SSHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 4678899999988876553
No 97
>COG4390 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=1.5e+02 Score=20.02 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=32.0
Q ss_pred chhhhcccCCcchhHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy11270 6 YRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPI 46 (98)
Q Consensus 6 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~A~~~L~pt~Pi 46 (98)
|.||+|...|.--+++++..+.-+-+-..-|+ .-|..||-
T Consensus 45 YnaLaeAF~G~LD~~aAeqGl~~FAEH~aDAr-~hPGkHPN 84 (106)
T COG4390 45 YNALAEAFDGKLDKEAAEQGLIWFAEHVADAR-AHPGKHPN 84 (106)
T ss_pred HHHHHHHhcCcccHHHHHhHHHHHHHHhHHHH-hCCCCCCC
Confidence 78999988887667788888888888777775 56888884
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.53 E-value=3.7e+02 Score=20.45 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 40 MQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 40 L~pt~PirLgL~LN~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
.-|.||.+--..++.+.-+.+ +++.++|+.+-++...
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~-~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQD-KGDTAKAKAVYQQVIK 245 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 357888887777777766665 7899998888776554
No 99
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.37 E-value=1.5e+02 Score=15.75 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHhcChHHHHHHHHHHHHH
Q psy11270 59 YEIINSPARACHLAKQVQYS 78 (98)
Q Consensus 59 yEil~~~~~A~~iAk~Afd~ 78 (98)
|.-+|++++|+++-++++..
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 44589999999998887664
No 100
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=21.27 E-value=1.7e+02 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHhcchhccccCCcccccc
Q psy11270 58 YYEIINSPARACHLAKQVQYSCIGASRVQILSVPRYHTTW 97 (98)
Q Consensus 58 ~yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~~~~~ 97 (98)
.+-++++.+.|=.+.+.+|-.+....+ .|..+.-..+|
T Consensus 28 ~~~~~~~~~~AEDlvQevfl~~~~~~~--~~~~~~~~~~w 65 (193)
T TIGR02947 28 ALRMTRNPADAEDLVQEAYAKAFSSFH--QFKPGTNLKAW 65 (193)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhc--ccCCCCcchHH
Confidence 445689999999999999999887766 34444444555
No 101
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=21.27 E-value=41 Score=24.12 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=12.3
Q ss_pred hcCCCCCcchhhhh
Q psy11270 38 SKMQPTHPIRLGLA 51 (98)
Q Consensus 38 ~~L~pt~PirLgL~ 51 (98)
.++.|-+|+-|||-
T Consensus 112 ~Ni~P~DPV~LGLC 125 (140)
T PF06242_consen 112 ANIKPRDPVTLGLC 125 (140)
T ss_pred ccCCcCCCceeccc
Confidence 47999999999984
No 102
>PRK12517 RNA polymerase sigma factor; Provisional
Probab=21.16 E-value=1.5e+02 Score=20.86 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHhcChHHHHHHHHHHHHHHHhcchhccccCCcccccc
Q psy11270 59 YEIINSPARACHLAKQVQYSCIGASRVQILSVPRYHTTW 97 (98)
Q Consensus 59 yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~~~~~ 97 (98)
+-++++.+.|=.+++.+|-.+....+ .|..+.-..+|
T Consensus 41 ~~~~~~~~~AeDlvQdvflkl~~~~~--~~~~~~~~~~w 77 (188)
T PRK12517 41 YWLCKDKHIAEDLVQETFLRAWRSLD--SLKDEKAAKAW 77 (188)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHH--hhcCccchHHH
Confidence 33578999999999999999988877 46666555566
No 103
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.68 E-value=1.2e+02 Score=14.36 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=15.0
Q ss_pred hHHHHHHHHhcChHHHHHHHHHHHH
Q psy11270 53 NFSVFYYEIINSPARACHLAKQVQY 77 (98)
Q Consensus 53 N~SVF~yEil~~~~~A~~iAk~Afd 77 (98)
+.+.-++. +++.++|+++-++..+
T Consensus 5 ~~a~~~~~-~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYK-LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 33444444 7888888877666544
No 104
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=20.54 E-value=1.5e+02 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHhcch
Q psy11270 57 FYYEIINSPARACHLAKQVQYSCIGASR 84 (98)
Q Consensus 57 F~yEil~~~~~A~~iAk~Afd~Ai~~~d 84 (98)
|.+-++++.+.|-.|.+.+|-.+....+
T Consensus 26 ~a~~~~~~~~~AEDivQevfl~~~~~~~ 53 (187)
T PRK12516 26 FAVSLIGRHDRADDLVQDTIMKAWAKQD 53 (187)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHhhh
Confidence 3345689999999999999999888765
No 105
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=20.31 E-value=1.6e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=26.7
Q ss_pred HHHhcChHHHHHHHHHHHHHHHhcchhccccCCcccccc
Q psy11270 59 YEIINSPARACHLAKQVQYSCIGASRVQILSVPRYHTTW 97 (98)
Q Consensus 59 yEil~~~~~A~~iAk~Afd~Ai~~~d~~~~~~~~~~~~~ 97 (98)
+-++++.+.|-.+++.+|-.+....+ .|..+.--.+|
T Consensus 25 ~~~~~d~~~AeDivQe~flk~~~~~~--~~~~~~~~~~w 61 (189)
T PRK12530 25 TLQLKDADLAEDVVQEALVSAYKNAD--SFKGQSALKTW 61 (189)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhch--hccCCccHHHH
Confidence 34579999999999999999888776 45444333344
No 106
>KOG1794|consensus
Probab=20.05 E-value=1e+02 Score=24.98 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcch-hhhhhhH
Q psy11270 20 AVVEDSQKAYQEAFDIAKSKMQPTHPIR-LGLALNF 54 (98)
Q Consensus 20 ~~~~~a~~aY~~A~~~A~~~L~pt~Pir-LgL~LN~ 54 (98)
.+.++-.+.-++|.+. ..+++.+|+| |||.|+-
T Consensus 44 ~~~~rie~~i~~A~~k--~g~d~~~~lr~lgL~lSg 77 (336)
T KOG1794|consen 44 TCASRIEDMIREAKEK--AGWDKKGPLRSLGLGLSG 77 (336)
T ss_pred HHHHHHHHHHHHHHhh--cCCCccCccceeeeeccc
Confidence 3455555555555553 4799999998 8888764
Done!