RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11270
(98 letters)
>gnl|CDD|206764 cd11310, 14-3-3_1, 14-3-3 protein domain. This 14-3-3 domain
family includes proteins in Caenorhabditis elegans, the
silkworm (Bombyx mori) as well as barley (Hordeum
vulgare). In C. elegans, 14-3-3 proteins are SIR-2.1
binding partners which induce transcriptional activation
of DAF-16 during stress and are required for the
life-span extension conferred by extra copies of
sir-2.1. In B. mori, the 14-3-3 proteins are expressed
widely in larval and adult tissues, including the brain,
fat body, Malpighian tube, silk gland, midgut, testis,
ovary, antenna, and pheromone gland, and interact with
the N-terminal fragment of Hsp60, suggesting that 14-3-3
(a molecular adaptor) and Hsp60 (a molecular chaperone)
work together to achieve a wide range of cellular
functions in B. mori. In barley aleurone cells, 14-3-3
proteins and members of the ABF transcription factor
family have a regulatory function in the gibberellic
acid (GA) pathway since the balance of GA and abscisic
acid (ABA) is a determining factor during transition of
embryogenesis and seed germination. 14-3-3 is an
essential part of 14-3-3 proteins, a ubiquitous class of
regulatory, phosphoserine/threonine-binding proteins
found in all eukaryotic cells, including yeast, protozoa
and mammalian cells.
Length = 230
Score = 151 bits (382), Expect = 1e-47
Identities = 67/74 (90%), Positives = 72/74 (97%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVATGDTRN+VVEDSQKAYQEAFDI+K+KMQPTHPIRLGLALNFSVFYYE
Sbjct: 120 MKGDYYRYLAEVATGDTRNSVVEDSQKAYQEAFDISKAKMQPTHPIRLGLALNFSVFYYE 179
Query: 61 IINSPARACHLAKQ 74
I+NSP +AC LAKQ
Sbjct: 180 ILNSPDKACQLAKQ 193
>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein.
Length = 236
Score = 147 bits (373), Expect = 3e-46
Identities = 49/74 (66%), Positives = 60/74 (81%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAE A+GD R + + +AY+ A +IA+ ++ PTHPIRLGLALNFSVFYYE
Sbjct: 121 MKGDYYRYLAEFASGDERKEAADKALEAYKAALEIAEKELPPTHPIRLGLALNFSVFYYE 180
Query: 61 IINSPARACHLAKQ 74
I+NSP +AC LAKQ
Sbjct: 181 ILNSPEKACELAKQ 194
>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain. 14-3-3 domain is an essential part
of 14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells. 14-3-3 proteins play important roles in
many biological processes that are regulated by
phosphorylation, including cell cycle regulation, cell
proliferation, protein trafficking, metabolic regulation
and apoptosis. More than 300 binding partners of the
14-3-3 domain have been identified in all subcellular
compartments and include transcription factors,
signaling molecules, tumor suppressors, biosynthetic
enzymes, cytoskeletal proteins and apoptosis factors.
14-3-3 binding can alter the conformation, localization,
stability, phosphorylation state, activity as well as
molecular interactions of a target protein. They
function only as dimers, some preferring strictly
homodimeric interaction, while others form heterodimers.
Binding of the 14-3-3 domain to its target occurs in a
phosphospecific manner where it binds to one of two
consensus sequences of their target proteins; RSXpSXP
(mode-1) and RXXXpSXP (mode-2). In some instances,
14-3-3 domain containing proteins are involved in
regulation and signaling of a number of cellular
processes in phosphorylation-independent manner. Many
organisms express multiple isoforms: there are seven
mammalian 14-3-3 family members (beta, gamma, eta,
theta, epsilon, sigma, zeta), each encoded by a distinct
gene, while plants contain up to 13 isoforms. The
flexible C-terminal segment of 14-3-3 isoforms shows the
highest sequence variability and may significantly
contribute to individual isoform uniqueness by playing
an important regulatory role by occupying the ligand
binding groove and blocking the binding of inappropriate
ligands in a distinct manner. Elevated amounts of 14-3-3
proteins are found in the cerebrospinal fluid of
patients with Creutzfeldt-Jakob disease. In protozoa,
like Plasmodium or Cryptosporidium parvum 14-3-3
proteins play an important role in key steps of parasite
development.
Length = 225
Score = 143 bits (362), Expect = 1e-44
Identities = 52/74 (70%), Positives = 59/74 (79%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAE A+GD R E ++KAYQEA +IAK + PTHPIRLGLALNFSVFYYE
Sbjct: 120 MKGDYYRYLAEFASGDERKEAAEKAKKAYQEALEIAKKLLPPTHPIRLGLALNFSVFYYE 179
Query: 61 IINSPARACHLAKQ 74
I+N P AC LAK+
Sbjct: 180 ILNDPEEACKLAKK 193
>gnl|CDD|206759 cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in mice, tau in
human), an isoform of 14-3-3 protein. 14-3-3 tau/theta
(tau in humans, theta in mice) isoform (also known as
tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase
activation protein, theta polypeptide) is encoded by the
YWHAQ gene in humans and plays an important role in
controlling apoptosis through interactions with ASK1,
c-jun NH-terminal kinase, and p38 mitogen-activated
protein kinase (MAPK). Its interaction with CDC25c
regulates entry into the cell cycle and subsequent
interaction with Bad prevents apoptosis. 14-3-3 theta
protein expression is induced in patients with
amyotrophic lateral sclerosis. 14-3-3 tau is often
overexpressed in breast cancer, which is associated with
the downregulation of p21, a p53 target gene, and thus
leads to tamoxifen resistance in MCF7 breast cancer
cells and shorter patient survival. Therefore, 14-3-3
tau may be a potential therapeutic target in breast
cancer. Additionally, 14-3-3 theta mediates
nucleocytoplasmic shuttling of the coronavirus
nucleocapsid protein which causes severe acute
respiratory syndrome. 14-3-3 domain is an essential part
of 14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 234
Score = 134 bits (339), Expect = 3e-41
Identities = 56/74 (75%), Positives = 63/74 (85%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAEVA GD R +E+SQ AYQEAFDI+K +MQPTHPIRLGLALNFSVFYYE
Sbjct: 121 MKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE 180
Query: 61 IINSPARACHLAKQ 74
I+N+P AC LAK
Sbjct: 181 ILNNPELACTLAKT 194
>gnl|CDD|206758 cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta isoforms of 14-3-3
protein. 14-3-3 protein beta and zeta isoform (also
known as tyrosine 3-monooxygenase/tryptophan
5-monooxygenase activation protein, beta and zeta
polypeptide) are encoded by the YWHAB gene and YWHAZ
gene in humans. They have been linked to mitogenic
signaling and the cell cycle machinery, and to cancer
initiation and progression, respectively. The beta
isoform has been shown to interact with RAF1 and CDC25
phosphatases and its overexpression is associated with
invasion, migration, metastasis and proliferation of
tumor cells and its elevated levels are correlated with
tumor size, the number of lymph node metastases and a
reduced survival rate. It is significantly overexpressed
in lung cancer tissues, mutated chronic lymphocytic
leukemia (M-CLL), gastric cancer tissues, aflatoxin
B1-induced rat hepatocellular carcinoma K1 and K2 cells,
as well as renal cell carcinoma cysts, and can
potentially be used as a diagnostic and prognostic
biomarker in the cancer. Numerous proteins involved in
anti-apoptosis and tumor progression were also found to
be differentially expressed in gastric cancer cells
where 14-3-3 beta is overexpressed. 14-3-3 beta also
interacts with human Dapper1 (hDpr1), a key negative
regulator of Wnt signaling, via hDpr1 phosphorylation by
protein kinase A, thus attenuating the ability of hDpr1
to promote Dishevelled (Dvl) degradation, and
subsequently enhancing Wnt signaling. The zeta isoform
is ubiquitously expressed and localized to most
subcellular regions, including the cytoplasm, plasma
membrane, mitochondria, and nucleus. Its overexpression
and gene amplification in multiple cancers are
correlated with poor prognosis and chemoresistance in
cancer patients. 14-3-3 zeta has been identified as a
biomarker with high sensitivity and specificity for
diagnosis and prognosis in multiple tumor types,
including hepatocellular carcinoma, head and neck
cancer, indicating a potential clinical application for
using 14-3-3 zeta in selecting treatment options and
predicting cancer outcome. It also interacts with IRS1
protein, suggesting a role in regulating insulin
sensitivity. 14-3-3 domains are an essential part of
14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 229
Score = 133 bits (336), Expect = 8e-41
Identities = 57/73 (78%), Positives = 65/73 (89%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVA GD + +VE SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYE
Sbjct: 120 MKGDYYRYLAEVAAGDDKKGIVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYE 179
Query: 61 IINSPARACHLAK 73
I+NSP +AC LAK
Sbjct: 180 ILNSPEKACSLAK 192
>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction
mechanisms].
Length = 268
Score = 122 bits (308), Expect = 4e-36
Identities = 49/75 (65%), Positives = 60/75 (80%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAE + G+ R + S +AY+ A +IA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 125 MKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYE 184
Query: 61 IINSPARACHLAKQV 75
I+NSP +ACHLAKQ
Sbjct: 185 ILNSPDKACHLAKQA 199
>gnl|CDD|206763 cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domain. This family
containing fungal 14-3-3 domains includes the yeasts
Saccharomyces cerevisiae (BMH1 and BMH2) and
Schizosaccharomyces pombe (rad24 and rad25) isoforms.
They possess distinctively variant C-terminal segments
that differentiate them from the mammalian isoforms; the
C-terminus is longer and BMH1/2 isoforms contain
polyglutamine (polyQ) sequences of unknown function. The
C-terminal segments of yeast 14-3-3 isoforms may thus
behave in a different manner compared to the higher
eukaryote isoforms. Yeast 14-3-3 proteins bind to
numerous proteins involved in a variety of yeast
cellular processes making them excellent model organisms
for elucidating the function of the 14-3-3 protein
family. BMH1 and BMH2 are positive regulators of
rapamycin-sensitive signaling via TOR kinases while they
play an inhibitory role in Rtg3p-dependent transcription
involved in retrograde signaling. 14-3-3 domains are an
essential part of 14-3-3 proteins, a ubiquitous class of
regulatory, phosphoserine/threonine-binding proteins
found in all eukaryotic cells, including yeast, protozoa
and mammalian cells.
Length = 231
Score = 121 bits (304), Expect = 7e-36
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE A GD R + S +AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 121 MKGDYHRYLAEFAVGDKRKEAADSSLEAYKAASDIAVTELPPTHPIRLGLALNFSVFYYE 180
Query: 61 IINSPARACHLAKQV 75
I+NSP ACHLAKQ
Sbjct: 181 ILNSPDSACHLAKQA 195
>gnl|CDD|206761 cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-3-3 protein.
14-3-3 eta isoform (also known as tyrosine
3-monooxygenase/tryptophan 5-monooxygenase activation
protein, eta polypeptide) is expressed mainly in brain,
and is involved in hypothalamic-pituitary-adrenocortical
(HPA) axis regulation. In humans, it is encoded by the
YWHAH gene, and is a positional and functional candidate
for schizophrenia as well as bipolar disorder (BP). This
gene contains a 7 bp repeat sequence in its 5'
Untranslated Region (UTR), and early-onset schizophrenia
has been associated with changes in the number of this
repeat. 14-3-3 eta and gamma are found in the serum and
synovial fluid of patients with joint inflammation.
Specifically, 14-3-3 eta, which plays a regulatory role
in chondrogenic differentiation, is significantly
overexpressed in juvenile rheumatoid arthritis (JRA), a
chronic inflammatory disease often associated with
growth impairment. Overexpression of Gremlin 1, the bone
morphogenetic protein antagonist, may play an oncogenic
role in carcinomas of the uterine cervix, lung, ovary,
kidney, breast, colon, pancreas, and sarcoma, since it
functions by interaction with the 14-3-3 eta domain.
Therefore, Gremlin 1 and its binding protein 14-3-3 eta
could be appropriate targets for developing diagnostic
and therapeutic strategies against human cancers. 14-3-3
domain is an essential part of 14-3-3 proteins, a
ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 239
Score = 120 bits (302), Expect = 1e-35
Identities = 56/74 (75%), Positives = 66/74 (89%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVA+G+ +N+VVE S+ AY+EAF+I+K MQPTHPIRLGLALNFSVFYYE
Sbjct: 124 MKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYE 183
Query: 61 IINSPARACHLAKQ 74
I N+P +AC LAKQ
Sbjct: 184 IQNAPEQACLLAKQ 197
>gnl|CDD|206760 cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of 14-3-3 protein.
14-3-3 gamma isoform (also known as tyrosine
3-monooxygenase/tryptophan 5-monooxygenase activation
protein, gamma polypeptide) is encoded by the YWHAG gene
in humans and is induced by growth factors in human
vascular smooth muscle cells. It is also highly
expressed in skeletal and heart muscles, suggesting an
important role in muscle tissue. It has been shown to
interact with RAF1 and protein kinase C, proteins
involved in various signal transduction pathways. 14-3-3
gamma mediates Cdc25A proteolysis to block premature
mitotic entry after DNA damage. 14-3-3 gamma mediates
the interaction between Chk1 and Cdc25A; this complex
has an essential function in Cdc25A phosphorylation and
degradation to block premature mitotic entry after DNA
damage. Increased expression of 14-3-3 gamma in lung
cancer coincides with loss of functional p53, possibly
in a cooperative manner promoting genomic instability.
Also, during cell cycle, 14-3-3 gamma protects p21, a
cyclin-dependent kinase inhibitor, from degradation
mediated by the p53 suppressor MDMX, which may account
for elevation of p21 levels independent of p53 and in
response to DNA damage. Elevated expression of 14-3-3
gamma in human hepatocellular carcinoma predicts
extrahepatic metastasis and worse survival, thus making
this protein a candidate biomarker and a potential
target for novel therapies against the disease.
Length = 246
Score = 119 bits (300), Expect = 3e-35
Identities = 56/73 (76%), Positives = 63/73 (86%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVATG+ R VVE S+KAY EA +I+K MQPTHPIRLGLALN+SVFYYE
Sbjct: 125 MKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYE 184
Query: 61 IINSPARACHLAK 73
I N+P +ACHLAK
Sbjct: 185 IQNAPEQACHLAK 197
>gnl|CDD|206756 cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of 14-3-3 protein.
14-3-3 protein sigma isoform, also known as stratifin or
human mammary epithelial marker (HME) 1, has been most
directly linked to tumor development. In humans, it is
expressed by the SFN gene, strictly in stratified
squamous epithelial cells in response to DNA damage
where it is transcriptionally induced in a p53-dependent
manner, subsequently causing cell-cycle arrest at the
G2/M checkpoint. Up-regulation and down-regulation of
14-3-3 sigma expression have both been described in
tumors. For example, in human breast cancer, 14-3-3
sigma is predominantly down-regulated by CpG
methylation, acting as both a tumor suppressor and a
prognostic indicator, while in human scirrhous-type
gastric carcinoma (SGC), it is up-regulated and may play
an important role in SGC carcinogenesis and progression.
Loss of 14-3-3 sigma expression sensitizes tumor cells
to treatment with conventional cytostatic drugs, making
this protein an attractive therapeutic target. 14-3-3
domains are an essential part of 14-3-3 proteins, a
ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 242
Score = 118 bits (297), Expect = 8e-35
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVATGD + +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YE
Sbjct: 123 MKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYE 182
Query: 61 IINSPARACHLAK 73
I NSP A LAK
Sbjct: 183 IANSPEEAISLAK 195
>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues. 14-3-3 homologues mediates
signal transduction by binding to
phosphoserine-containing proteins. They are involved in
growth factor signalling and also interact with MEK
kinases.
Length = 244
Score = 118 bits (298), Expect = 9e-35
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE TG R E++ AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 123 MKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYE 182
Query: 61 IINSPARACHLAKQ 74
I+NSP RAC+LAKQ
Sbjct: 183 ILNSPDRACNLAKQ 196
>gnl|CDD|206762 cd10026, 14-3-3_plant, Plant 14-3-3 protein domain. Plant 14-3-3
isoforms, similar to their highly conserved homologs in
mammals, bind to phosphorylated target proteins to
modulate their function. They have been implicated in a
variety of physiological functions; in particular,
abiotic and biotic stress responses, primary metabolism,
as well as various aspects of plant growth and
development. They function through the regulation of a
diverse range of proteins including transcription
factors, kinases, structural proteins, ion channels as
well as pathogen defense-related proteins. The 14-3-3
proteins are affected transcriptionally as well as
functionally by the environment of the plant, both
intracellular and extracellular, thus playing a key role
in the response to environmental stress, pathogens and
light conditions. Plant 14-3-3 proteins have been
divided into epsilon-like groups and non-epsilon groups
based on phylogenetic clustering. They have a varying
number of isoforms (for example, Arabidopsis has
thirteen known protein isoforms, cotton has six) with
variation in their affinity for specific binding
partners, suggesting specific roles in specific
processes.
Length = 237
Score = 114 bits (287), Expect = 3e-33
Identities = 50/74 (67%), Positives = 57/74 (77%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE TG R E + AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 123 MKGDYHRYLAEFKTGAERKEAAESTLLAYKAAQDIALTELAPTHPIRLGLALNFSVFYYE 182
Query: 61 IINSPARACHLAKQ 74
I+NSP RAC LAKQ
Sbjct: 183 ILNSPDRACTLAKQ 196
>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3
protein. 14-3-3 protein epsilon isoform (isoform (also
known as tyrosine 3-monooxygenase/ tryptophan
5-monooxygenase activation protein, epsilon polypeptide)
is encoded by the YWHAE gene in humans and is involved
in cancer cell survival and growth. It interacts with
CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting
its role in diverse biochemical activities related to
signal transduction, such as cell division and
regulation of insulin sensitivity. Overexpression of
14-3-3 epsilon in primary hepatocellular carcinoma (HCC)
tissues predicts a high risk of extrahepatic metastasis
and worse survival, and is a potential therapeutic
target. It has also been implicated in the pathogenesis
of small cell lung cancer. 14-3-3 epsilon overexpression
protects colorectal cancer and endothelial cells from
oxidative stress-induced apoptosis, while its
suppression by non-steroidal anti-inflammatory drugs
induces cancer and endothelial cell death. Cellular
levels of 14-3-3 epsilon could possibly serve as an
important regulator of cell survival in response to
oxidative stress and other death signals. 14-3-3 domains
are an essential part of 14-3-3 proteins, a ubiquitous
class of regulatory, phosphoserine/threonine-binding
proteins found in all eukaryotic cells, including yeast,
protozoa and mammalian cells.
Length = 230
Score = 114 bits (286), Expect = 3e-33
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE ATG+ R E+S AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 121 MKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYE 180
Query: 61 IINSPARACHLAK 73
I+NSP RAC LAK
Sbjct: 181 ILNSPDRACRLAK 193
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 28.0 bits (62), Expect = 0.64
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHP 45
M DYY+ L G RNA ED +KA++E +AK HP
Sbjct: 1 MAKDYYKIL-----GVDRNASQEDIKKAFRE---LAKKWHPDLHP 37
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 34 DIAKSKMQPTHPIRLGLALNF---SVFYYEIINSPARACHLAKQVQYSCIGASRVQILSV 90
I Q THP RL F S Y E+++S +A + + V ++++
Sbjct: 106 QIGSGFFQETHPDRL-----FVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTL 159
Query: 91 P 91
P
Sbjct: 160 P 160
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 26.8 bits (60), Expect = 1.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 89 SVPRYHTTW 97
SVPR+H TW
Sbjct: 136 SVPRFHITW 144
>gnl|CDD|187824 cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily
protein Cas5. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas5 is a RAMP superfamily protein; Subunit of the
Cascade complex.
Length = 202
Score = 26.3 bits (58), Expect = 2.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 21 VVEDSQKAYQEAFDIAKSKMQPTHPIRLG 49
V ++ ++ K+ QP P+ LG
Sbjct: 109 VALSNEGDEYLLEELRKALGQPRFPLYLG 137
>gnl|CDD|233635 TIGR01915, npdG, NADPH-dependent F420 reductase. This model
represents a subset of a parent family described by
pfam03807. Unlike the parent family, members of this
family are found only in species with evidence of
coenzyme F420. All members of this family are believed
to act as NADPH-dependent F420 reductase [Energy
metabolism, Electron transport].
Length = 219
Score = 25.9 bits (57), Expect = 3.4
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 20/74 (27%)
Query: 43 THPIRLGLALNFSVFYYEII---NSPARACHLAKQ---------VQYSCIGA-------- 82
T GLAL + +II +A A + GA
Sbjct: 9 TGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR 68
Query: 83 SRVQILSVPRYHTT 96
+ V IL+VP H
Sbjct: 69 ADVVILAVPWDHVL 82
>gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 262
Score = 25.9 bits (57), Expect = 4.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 12 VATGDTRNAVVEDSQKAYQEAFDIAKSK 39
A+ D A V + K Y A D+ KS
Sbjct: 128 SASVDGDGAPVSPATKLYNAALDLYKSG 155
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P. Part of the
50S ribosomal subunit. Forms a cluster with proteins L3
and L24e, part of which may contact the 16S rRNA in 2
intersubunit bridges.
Length = 131
Score = 25.4 bits (56), Expect = 4.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 81 GASRVQILSVPRYHTTW 97
GA V+++SV Y
Sbjct: 24 GAKEVEVISVKGYKGVK 40
>gnl|CDD|173856 cd08491, PBP2_NikA_DppA_OppA_like_12, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 473
Score = 25.8 bits (57), Expect = 4.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 10 AEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPI 46
A ATGD R K +QE F ++ P+
Sbjct: 414 AMAATGDER-------AKLFQEIFAYVHDEIVADIPM 443
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 25.6 bits (57), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 20 AVVEDSQKAYQEAFDIAKSKMQPT 43
D Q+A Q AF++A + PT
Sbjct: 207 KYRSDIQEAAQNAFNLAVNAAYPT 230
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 25.3 bits (56), Expect = 4.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 81 GASRVQILSVPRYHTTW 97
GA V+I+SV Y
Sbjct: 25 GAKEVEIISVKGYKGVK 41
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 25.6 bits (56), Expect = 4.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 89 SVPRYHTTW 97
SVPR+H TW
Sbjct: 137 SVPRFHITW 145
>gnl|CDD|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate
dehydratase; Provisional.
Length = 386
Score = 25.1 bits (55), Expect = 8.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 32 AFDIAKSKMQPTHPIR 47
A ++AK+K+ P+R
Sbjct: 32 AVEVAKAKLLSHRPVR 47
>gnl|CDD|184301 PRK13751, PRK13751, putative mercuric transport protein;
Provisional.
Length = 116
Score = 24.2 bits (53), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 40 MQPTHPIRLGLALNFSVFYYEIINSPARAC 69
++P PI +G AL F + I PA AC
Sbjct: 47 LEPYRPIFIGAALVALFFAWRRIYRPAAAC 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.133 0.407
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,826,041
Number of extensions: 377404
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 29
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)