RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11270
(98 letters)
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell
regulator protein, cryptospo parvum, structural
genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP:
a.118.7.1
Length = 227
Score = 129 bits (326), Expect = 2e-39
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
+K D RY E +EDS+K +Q+AF + + LG N + E
Sbjct: 125 VKSDISRYKLEFGLCS-----LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSE 179
Query: 61 IINSPARACHLAK 73
+ ++
Sbjct: 180 KYGEKKQVFNMLN 192
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3,
phosphoserine, structural GE consortium, SGC, ywhae;
HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A*
3m50_A* 3m51_A* 3axy_C*
Length = 234
Score = 100 bits (250), Expect = 4e-28
Identities = 52/80 (65%), Positives = 60/80 (75%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE ATG+ R E+S AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 125 MKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYE 184
Query: 61 IINSPARACHLAKQVQYSCI 80
I+NSP RAC LAK I
Sbjct: 185 ILNSPDRACRLAKAAFDDAI 204
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family,
activating drug; HET: TPO; 2.3A {Nicotiana tabacum}
SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Length = 260
Score = 100 bits (250), Expect = 7e-28
Identities = 50/75 (66%), Positives = 58/75 (77%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE TG R E + AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 130 MKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYE 189
Query: 61 IINSPARACHLAKQV 75
I+NSP RAC+LAKQ
Sbjct: 190 ILNSPDRACNLAKQA 204
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein,
secreted, prote binding, signaling protein; HET: SEP;
1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A*
3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A*
3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A
1a38_A 1a4o_A* 1ib1_A* ...
Length = 236
Score = 99 bits (248), Expect = 9e-28
Identities = 50/75 (66%), Positives = 60/75 (80%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVATGD + +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YE
Sbjct: 128 MKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYE 187
Query: 61 IINSPARACHLAKQV 75
I NSP A LAK
Sbjct: 188 IANSPEEAISLAKTT 202
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics
consortium, MA alpha, phosphoserine, phosphothreonine;
HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A*
2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A*
2btp_A*
Length = 248
Score = 99.9 bits (248), Expect = 1e-27
Identities = 56/75 (74%), Positives = 63/75 (84%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDYYRYLAEVATG+ R VVE S+KAY EA +I+K MQPTHPIRLGLALN+SVFYYE
Sbjct: 126 MKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYE 185
Query: 61 IINSPARACHLAKQV 75
I N+P +ACHLAK
Sbjct: 186 IQNAPEQACHLAKTA 200
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling
protein, signaling protein-protei complex; HET: SEP;
1.90A {Homo sapiens}
Length = 261
Score = 99 bits (248), Expect = 2e-27
Identities = 51/76 (67%), Positives = 59/76 (77%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RYLAE ATG+ R E+S AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 151 MKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYE 210
Query: 61 IINSPARACHLAKQVQ 76
I+NSP RAC LAK
Sbjct: 211 ILNSPDRACRLAKAAF 226
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3,
struc genomics, structural genomics consortium, SGC,
protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Length = 260
Score = 96.1 bits (238), Expect = 5e-26
Identities = 43/75 (57%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
MKGDY+RY++E +TGD++ + ED+ KAY++A +AK ++PTHPIRLGLALNFSVF+YE
Sbjct: 151 MKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAK-DLEPTHPIRLGLALNFSVFHYE 209
Query: 61 IINSPARACHLAKQV 75
I+N P A +AK+
Sbjct: 210 ILNEPRAAIDMAKEA 224
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom
structural genomics consortium, SGC; HET: SEP; 2.08A
{Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Length = 268
Score = 92.2 bits (228), Expect = 2e-24
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1 MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFY 58
+KGD RY AE+ + +N ++ + + Y++A +S ++ P+ P+ L LN+++
Sbjct: 147 LKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILK 206
Query: 59 YEIINSPARACHLAKQV 75
Y+++ +P A A +
Sbjct: 207 YDLLGNPEGAMKFANRA 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.23
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 12 VATGDTRNAVVEDSQKAYQEAFDI-AKSKMQPTHPIRLGLALNFSVFYYEIINSPARACH 70
+A D+ + +KA F I + +P +L S+ + N+
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRC--YEAYPN---TSLPPSILEDSLENNEGVPSP 337
Query: 71 LAKQVQYSCIGASRVQILS 89
+ S ++ Q+
Sbjct: 338 ML-----SISNLTQEQVQD 351
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain,
non-heme iron, conformational change, dioxygenase,
oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Length = 698
Score = 24.9 bits (53), Expect = 6.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 1 MKGDYYRYLAEVATGDTRNA 20
M + +Y V TGD R A
Sbjct: 15 MHHHHMKYKITVETGDLRGA 34
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 24.1 bits (52), Expect = 7.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 18 RNAVVEDSQKAYQEAFD 34
+ AV D++ YQ+A
Sbjct: 20 KRAVELDAESRYQQALV 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.407
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,482,558
Number of extensions: 72112
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 18
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)