RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11270
         (98 letters)



>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
           cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
          Length = 220

 Score =  118 bits (298), Expect = 1e-35
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 1   MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
           +K D  RY  E          +EDS+K +Q+AF +          + LG   N +    E
Sbjct: 123 VKSDISRYKLEFGLC-----SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSE 177

Query: 61  IINSPARACHLAKQ 74
                 +  ++   
Sbjct: 178 KYGEKKQVFNMLNS 191


>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 236

 Score =  114 bits (288), Expect = 5e-34
 Identities = 50/74 (67%), Positives = 58/74 (78%)

Query: 1   MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
           MKGDY+RYLAE  TG  R    E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYE
Sbjct: 126 MKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYE 185

Query: 61  IINSPARACHLAKQ 74
           I+NSP RAC+LAKQ
Sbjct: 186 ILNSPDRACNLAKQ 199


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score =  113 bits (285), Expect = 9e-34
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1   MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFY 58
           +KGD  RY AE+   + +N  ++ + + Y++A    +S ++  P+ P+ L   LN+++  
Sbjct: 102 LKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILK 161

Query: 59  YEIINSPARACHLAKQ 74
           Y+++ +P  A   A +
Sbjct: 162 YDLLGNPEGAMKFANR 177


>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 230

 Score =  112 bits (281), Expect = 5e-33
 Identities = 56/74 (75%), Positives = 65/74 (87%)

Query: 1   MKGDYYRYLAEVATGDTRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE 60
           MKGDYYRYLAEVA GD +  +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYE
Sbjct: 121 MKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYE 180

Query: 61  IINSPARACHLAKQ 74
           I+NSP +AC LAK 
Sbjct: 181 ILNSPEKACSLAKT 194


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 24.1 bits (52), Expect = 3.1
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 19  NAVVEDSQKAYQEAFDI 35
           N  V++  + Y +++DI
Sbjct: 256 NDRVDELLEKYMDSYDI 272


>d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1
          (RanGAP1), C-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 157

 Score = 23.2 bits (50), Expect = 6.9
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 16 DTRNAVVEDSQKAYQEAFDIAKSK 39
            R AV +      Q+AF+ +   
Sbjct: 55 TVRMAVQDAVDALMQKAFNSSSFN 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,953
Number of extensions: 13132
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 10
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)