Query psy11271
Match_columns 78
No_of_seqs 111 out of 171
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:37:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_n 60S ribosomal protein R 100.0 2.4E-45 8.4E-50 237.5 5.8 77 1-77 1-78 (78)
2 3iz5_n 60S ribosomal protein L 100.0 1.1E-44 3.8E-49 229.8 3.6 69 1-77 1-69 (69)
3 4a18_P RPL38, ribosomal protei 100.0 2.6E-42 8.8E-47 227.9 7.0 70 1-78 1-78 (89)
4 3u5e_d L34, YL28, 60S ribosoma 73.3 9.1 0.00031 25.4 5.5 52 2-55 30-94 (113)
5 4a17_W RPL31, 60S ribosomal pr 67.9 14 0.00048 24.4 5.5 52 2-55 29-93 (111)
6 3j20_L 30S ribosomal protein S 43.3 60 0.002 20.4 7.0 67 8-75 20-97 (102)
7 3l6i_A Uncharacterized lipopro 26.5 21 0.00073 24.6 1.0 25 50-75 139-163 (181)
8 1wh9_A 40S ribosomal protein S 25.9 1E+02 0.0034 19.0 4.0 34 7-48 11-45 (92)
9 1vq8_X 50S ribosomal protein L 23.5 57 0.002 20.7 2.5 48 2-49 28-78 (92)
10 3iz6_J 40S ribosomal protein S 23.4 76 0.0026 21.0 3.2 44 31-75 78-122 (128)
11 1gxl_A SMC, chromosome segrega 23.2 84 0.0029 20.3 3.4 25 51-75 144-168 (213)
12 3l51_B Structural maintenance 22.4 62 0.0021 21.2 2.6 25 52-76 119-143 (166)
13 3u5c_U 40S ribosomal protein S 21.4 1.8E+02 0.006 18.9 8.1 67 8-75 38-115 (121)
No 1
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=100.00 E-value=2.4e-45 Score=237.47 Aligned_cols=77 Identities=57% Similarity=0.760 Sum_probs=72.2
Q ss_pred CchhhHHHHHHHHHhhhCCCceeEEeccccCCCCCCC-CceeEEEeecCcEEEEEecChHHHHHhHhcCCCCCeeeec
Q psy11271 1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKP-DNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEI 77 (78)
Q Consensus 1 MPkeI~dIK~Fl~~arrkDAksv~IKk~~~~~~~~~~-~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l~v~~~ 77 (78)
||+||+|||+||++|||+||+||+||+|+..|++|+. ++||||||||||||||+|+|++||+||+|||||||+|+++
T Consensus 1 MPkei~dIK~Fl~~arrkDAksv~IKknk~~~~~g~~~~~tKFKvRcsryLYTLvv~D~~KAeKL~qSLPp~l~v~~~ 78 (78)
T 3izc_n 1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLPPTLKVNRL 78 (78)
T ss_dssp CCTHHHHHHHHHHHHCCSCEEEEEEECCCCCCTTTSSCCCCEEEEEESSCCCCCSSCSHHHHHHHHHSSSCCCCCCCC
T ss_pred CChhHHHHHHHHHHHhhCCCeeEEEEeccccccccccccceEEEEEeccceEEEEeCCHHHHHHHHhcCCCCceeecC
Confidence 9999999999999999999999999999777766553 7899999999999999999999999999999999999875
No 2
>3iz5_n 60S ribosomal protein L38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_n
Probab=100.00 E-value=1.1e-44 Score=229.84 Aligned_cols=69 Identities=68% Similarity=1.102 Sum_probs=67.6
Q ss_pred CchhhHHHHHHHHHhhhCCCceeEEeccccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhHhcCCCCCeeeec
Q psy11271 1 MPREIKEIKEFLLKARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGLQVKEI 77 (78)
Q Consensus 1 MPkeI~dIK~Fl~~arrkDAksv~IKk~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l~v~~~ 77 (78)
||+||+|||+||++|||+||+||+||+| +++||||||||||||||+|+|+|||+||+|||||||+|+|+
T Consensus 1 MPkei~~ik~Fl~~arrkdAksv~IKkn--------~~~~KfKvRcsryLYTLvv~D~eKAeKl~qslPp~l~v~~~ 69 (69)
T 3iz5_n 1 MPKQIHEIKDFLLTARRKDARSVRIKRT--------KDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV 69 (69)
T ss_dssp CCTHHHHHHHHHHHHSSSCCCCEECCCC--------SSCCCCEECSSSCCCCCSSCCHHHHHHTTTSSSCCCCCCCC
T ss_pred CChhHHHHHHHHHHHhhCCCeEEEEEec--------CCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCceeeeC
Confidence 9999999999999999999999999999 78999999999999999999999999999999999999885
No 3
>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P
Probab=100.00 E-value=2.6e-42 Score=227.86 Aligned_cols=70 Identities=34% Similarity=0.554 Sum_probs=60.7
Q ss_pred CchhhHHHHHHHHHhhhCCCcee--------EEeccccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhHhcCCCCC
Q psy11271 1 MPREIKEIKEFLLKARRKDAKSV--------TIKRNISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLKQSLPPGL 72 (78)
Q Consensus 1 MPkeI~dIK~Fl~~arrkDAksv--------~IKk~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~qSLPP~l 72 (78)
||+||+|||+||++|||+||+|| +||+| .++||||||||||||||+|+|+||||+|+|||||||
T Consensus 1 MPkqI~dIK~FL~~arrkDaksv~~~kkk~~~IKkn--------~~~tKFKvRcsryLYTLvv~D~~KAeKlkqSLPp~l 72 (89)
T 4a18_P 1 MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTN--------KRITKFKLRGKKYLYTFKTADPKIAKGIKDAIPATY 72 (89)
T ss_dssp -CEEESSHHHHHHHHHC----------CCEEEEEEC--------SSCEEEEEECSSCEEEEEECSHHHHHHHHHTCCSSS
T ss_pred CChhHHHHHHHHHHHHccCCceeeeccccceeEEec--------CCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCc
Confidence 99999999999999999999999 89998 889999999999999999999999999999999999
Q ss_pred eeeecC
Q psy11271 73 QVKEIK 78 (78)
Q Consensus 73 ~v~~~k 78 (78)
.+++|+
T Consensus 73 ~v~~i~ 78 (89)
T 4a18_P 73 SKIEIK 78 (89)
T ss_dssp EEEEC-
T ss_pred eEEEcc
Confidence 999984
No 4
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=73.26 E-value=9.1 Score=25.44 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHHhhhCCCceeEEecc--ccCCCCCC-CCceeEEEeecCc----------EEEEEe
Q psy11271 2 PREIKEIKEFLLKARRKDAKSVTIKRN--ISKNKDKK-PDNTKFKVRCSRF----------LYTLVI 55 (78)
Q Consensus 2 PkeI~dIK~Fl~~arrkDAksv~IKk~--~~~~~~~~-~~~tKFKvRcsry----------LYTLvv 55 (78)
|+-|.+|+.|..... ++..|+|=.. +.--+.|- +---...||.||- ||||+-
T Consensus 30 prAlkeIrkFa~K~M--gt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~nededs~~klytlvt 94 (113)
T 3u5e_d 30 PRAVKEIKKFAKLHM--GTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVE 94 (113)
T ss_dssp HHHHHHHHHHHHHHH--CCSCEEECHHHHHHHHTTCTTCCCSEEEEEEEEEECCSSCCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHc--CCCceEECcHHHHHHHhccccCCCceEEEEEEEecCCCCCCccccEEEEE
Confidence 788999999988777 5677887431 00000011 1224667778874 899974
No 5
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=67.92 E-value=14 Score=24.44 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHhhhCCCceeEEecc--ccCCCCCC-CCceeEEEeecCc----------EEEEEe
Q psy11271 2 PREIKEIKEFLLKARRKDAKSVTIKRN--ISKNKDKK-PDNTKFKVRCSRF----------LYTLVI 55 (78)
Q Consensus 2 PkeI~dIK~Fl~~arrkDAksv~IKk~--~~~~~~~~-~~~tKFKvRcsry----------LYTLvv 55 (78)
|+.|.+|+.|..... ++..|+|=.. +.-=+.|- +--.+..||.||- ||||+-
T Consensus 29 prAlkeIrkFa~K~M--gt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~nededs~~klytlvt 93 (111)
T 4a17_W 29 PRAIREIVAIAKKTM--GTDDVRIDTELNKFIWSNGIRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQ 93 (111)
T ss_dssp HHHHHHHHHHHHHHH--CCSCEEECHHHHHHHHTTCSSSCCSEEEEEEEEEECCCSSCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHc--CCCceEECcHHHHHHHhccccCCCcEEEEEEEEecCCCCCCCCCcEEEEE
Confidence 788999999988777 4667887431 00000011 1124566777763 899873
No 6
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.34 E-value=60 Score=20.43 Aligned_cols=67 Identities=12% Similarity=0.265 Sum_probs=46.4
Q ss_pred HHHHHHHhhhCCCce---eEE----ec---cccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhH-hcCCCCCeee
Q psy11271 8 IKEFLLKARRKDAKS---VTI----KR---NISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLK-QSLPPGLQVK 75 (78)
Q Consensus 8 IK~Fl~~arrkDAks---v~I----Kk---~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~-qSLPP~l~v~ 75 (78)
..++.+.|.+.++.- +.. .+ .++.-.+|++..--|..|.-+-|..+ -.+++-++.|. -+||||..+.
T Consensus 20 ~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi-~~~~~~v~~l~~~~lp~GV~ve 97 (102)
T 3j20_L 20 ANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDI-EADERAMRQIMRIRVPEDVTIE 97 (102)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEE-EECHHHHHHHTTSCCCSSCEEE
T ss_pred HHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEE-eCCHHHHHHHhcCcCCCCcEEE
Confidence 345667888887764 221 11 13344444556678999999999999 56788888876 6899999874
No 7
>3l6i_A Uncharacterized lipoprotein YCEB; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.01A {Escherichia coli}
Probab=26.46 E-value=21 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEEEecChHHHHHhHhcCCCCCeee
Q psy11271 50 LYTLVITDNEKAEKLKQSLPPGLQVK 75 (78)
Q Consensus 50 LYTLvv~D~eKAeKl~qSLPP~l~v~ 75 (78)
+|||.-.|. ++|.|..++++++.|+
T Consensus 139 VY~Ld~~~~-k~eal~k~~~k~i~Ve 163 (181)
T 3l6i_A 139 AYVLREDGS-QGEAMAKKLAKGIEVK 163 (181)
T ss_dssp SEECCSSSC-HHHHHHHHHCCCCEEE
T ss_pred eEEECcccC-hHHHHHHhccCceEEE
Confidence 688833322 5788999999998885
No 8
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=25.93 E-value=1e+02 Score=19.02 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHH-hhhCCCceeEEeccccCCCCCCCCceeEEEeecC
Q psy11271 7 EIKEFLLK-ARRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSR 48 (78)
Q Consensus 7 dIK~Fl~~-arrkDAksv~IKk~~~~~~~~~~~~tKFKvRcsr 48 (78)
.|++||.- ..+.+...|.|.+. .+.+..-+.++|
T Consensus 11 ~IR~~i~k~l~~aGis~IeIeR~--------~~~i~I~I~tar 45 (92)
T 1wh9_A 11 ELNEFLTRELAEDGYSGVEVRVT--------PTRTEIIILATR 45 (92)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEEC--------SSCEEEEEEESC
T ss_pred HHHHHHHHHHHHCceeeEEEEEC--------CCeEEEEEEeCC
Confidence 57888853 44456777999997 678888887776
No 9
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=23.49 E-value=57 Score=20.69 Aligned_cols=48 Identities=23% Similarity=0.321 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHhhhCCCceeEEecc--ccCCCCCC-CCceeEEEeecCc
Q psy11271 2 PREIKEIKEFLLKARRKDAKSVTIKRN--ISKNKDKK-PDNTKFKVRCSRF 49 (78)
Q Consensus 2 PkeI~dIK~Fl~~arrkDAksv~IKk~--~~~~~~~~-~~~tKFKvRcsry 49 (78)
|+-|.+|+.|+.-...-+...|+|=-. +.-=..|- +--.+..||.||+
T Consensus 28 prAik~Irkfa~k~m~t~~~dVriD~~LNk~iW~rGir~vP~rIRVr~sR~ 78 (92)
T 1vq8_X 28 DKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARF 78 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHTTTCSSCCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEECcHHHHHHHhcccCCCCceEEEEEEEE
Confidence 788999999999988665558887432 00000011 1234777888875
No 10
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.35 E-value=76 Score=21.01 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=32.4
Q ss_pred CCCCCCCCceeEEEeecCcEEEEEecChHHHHHh-HhcCCCCCeee
Q psy11271 31 KNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKL-KQSLPPGLQVK 75 (78)
Q Consensus 31 ~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl-~qSLPP~l~v~ 75 (78)
.-.+|++..-.|..|.-+-|..|.-+ ++-.+.| .-+||||..+.
T Consensus 78 Phv~gKkSrEqFE~RtHKRlIdI~~~-~~~v~~l~~l~lP~GV~ve 122 (128)
T 3iz6_J 78 PCGEGTNTWDRFEMRVHKRVIDLVSS-ADVVKQITSITIEPGVEVE 122 (128)
T ss_dssp CCCSSCCSSCCEEEEEEEEEEECCSS-CCHHHHHHHHHSCCCSSCE
T ss_pred CCCCCCcchhheEEEEEEEEEEEeCc-HHHHHHHhCCcCCCCCEEE
Confidence 33334445568999999988888754 6667787 57999999874
No 11
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=23.23 E-value=84 Score=20.27 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.4
Q ss_pred EEEEecChHHHHHhHhcCCCCCeee
Q psy11271 51 YTLVITDNEKAEKLKQSLPPGLQVK 75 (78)
Q Consensus 51 YTLvv~D~eKAeKl~qSLPP~l~v~ 75 (78)
-|+++.|-+-|..+..+++++..+.
T Consensus 144 ~~~vv~~l~~A~~~~~~~~~~~~~V 168 (213)
T 1gxl_A 144 NSVVVETLDDAIRMKKKYRLNTRIA 168 (213)
T ss_dssp SEEEESSHHHHHHHHHHTCSSCEEE
T ss_pred CEEEECCHHHHHHHHHhcCCCceEE
Confidence 4899999999999999999887654
No 12
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=22.36 E-value=62 Score=21.18 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.5
Q ss_pred EEEecChHHHHHhHhcCCCCCeeee
Q psy11271 52 TLVITDNEKAEKLKQSLPPGLQVKE 76 (78)
Q Consensus 52 TLvv~D~eKAeKl~qSLPP~l~v~~ 76 (78)
|++++|-+-|..+..++++++.+..
T Consensus 119 tlVv~dl~~A~~~~~~~~~~~r~VT 143 (166)
T 3l51_B 119 TLVANNLDQATRVAYQRDRRWRVVT 143 (166)
T ss_dssp CEEESSHHHHHHHHBCSSCBCCEEE
T ss_pred EEEECCHHHHHHHHHhhCCCcEEEE
Confidence 9999999999999988888776643
No 13
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=21.43 E-value=1.8e+02 Score=18.94 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=45.3
Q ss_pred HHHHHHHhhhCCCcee---E----Eec---cccCCCCCCCCceeEEEeecCcEEEEEecChHHHHHhH-hcCCCCCeee
Q psy11271 8 IKEFLLKARRKDAKSV---T----IKR---NISKNKDKKPDNTKFKVRCSRFLYTLVITDNEKAEKLK-QSLPPGLQVK 75 (78)
Q Consensus 8 IK~Fl~~arrkDAksv---~----IKk---~~~~~~~~~~~~tKFKvRcsryLYTLvv~D~eKAeKl~-qSLPP~l~v~ 75 (78)
..++.+.|++.++.-. . +.+ .++.-.+|++..--|..|.-+-|..|.- +++-++.|. -+||||..+.
T Consensus 38 ~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~~-~~~~v~~l~~~~lp~GV~ve 115 (121)
T 3u5c_U 38 SSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEA-PVQIVKRITQITIEPGVDVE 115 (121)
T ss_dssp HHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEECC-CHHHHHHHHHSSCCTTCEEE
T ss_pred HHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEecC-CHHHHHHHHcCcCCCCCEEE
Confidence 3566778888887742 1 111 1333433445566899999998888874 577777765 6899999874
Done!