Query psy11271
Match_columns 78
No_of_seqs 111 out of 171
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 22:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11271.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11271hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga2 d.58.44.1 (A:135-181,A 56.2 1.5 0.00011 25.7 0.6 16 60-75 83-98 (104)
2 d1yq2a2 b.1.4.1 (A:220-312) be 41.9 4.4 0.00032 22.7 1.1 11 47-57 70-80 (93)
3 d1h67a_ a.40.1.1 (A:) Calponin 28.0 10 0.00074 22.6 1.1 17 1-17 1-17 (108)
4 d1wh9a_ d.52.3.1 (A:) Ribosoma 27.4 45 0.0033 19.4 4.1 35 6-48 10-45 (92)
5 d1gxja_ d.215.1.1 (A:) Smc hin 25.5 7.5 0.00055 23.9 0.2 25 42-66 37-61 (161)
6 d2f06a2 d.58.18.11 (A:1-70) Hy 25.4 46 0.0033 18.1 3.7 18 50-67 44-61 (70)
7 d1bhga1 b.1.4.1 (A:226-328) be 24.8 12 0.0009 20.8 1.1 10 47-56 72-81 (103)
8 d1jz8a1 b.1.4.1 (A:220-333) be 24.0 13 0.00095 20.7 1.1 9 48-56 87-95 (114)
9 d2vzsa1 b.1.4.1 (A:226-335) Ex 22.6 14 0.001 20.9 1.1 10 47-56 83-92 (110)
10 d1wpxb1 b.17.1.1 (B:501-719) C 22.3 9.5 0.00069 24.8 0.2 11 49-59 87-97 (219)
11 d2f06a1 d.58.18.11 (A:71-141) 21.2 27 0.002 18.9 2.1 18 50-67 40-57 (71)
12 d2uubj1 d.58.15.1 (J:3-100) Ri 20.7 29 0.0021 19.9 2.2 39 37-75 56-95 (98)
13 d2je8a1 b.1.4.1 (A:220-330) Be 20.6 17 0.0012 20.3 1.1 10 47-56 85-94 (111)
No 1
>d1iwga2 d.58.44.1 (A:135-181,A:274-330) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=56.20 E-value=1.5 Score=25.65 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.7
Q ss_pred HHHHhHhcCCCCCeee
Q psy11271 60 KAEKLKQSLPPGLQVK 75 (78)
Q Consensus 60 KAeKl~qSLPP~l~v~ 75 (78)
..+.++++||+|+++.
T Consensus 83 ~l~el~~~lP~Gv~~~ 98 (104)
T d1iwga2 83 ELAKMEPFFPSGLKIV 98 (104)
T ss_dssp HTTTTGGGCCTTEEEE
T ss_pred HHHHHHhcCCCCeEEE
Confidence 4456889999999875
No 2
>d1yq2a2 b.1.4.1 (A:220-312) beta-Galactosidase, domains 2 and 4 {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=41.85 E-value=4.4 Score=22.68 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=8.8
Q ss_pred cCcEEEEEecC
Q psy11271 47 SRFLYTLVITD 57 (78)
Q Consensus 47 sryLYTLvv~D 57 (78)
+-|||||.+.-
T Consensus 70 ~P~LY~l~v~l 80 (93)
T d1yq2a2 70 VPRLYEASVSS 80 (93)
T ss_dssp SBCCEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 45999999874
No 3
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.02 E-value=10 Score=22.57 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHhhh
Q psy11271 1 MPREIKEIKEFLLKARR 17 (78)
Q Consensus 1 MPkeI~dIK~Fl~~arr 17 (78)
||++-+++++|++-.=.
T Consensus 1 mp~~e~e~~~Wie~~~~ 17 (108)
T d1h67a_ 1 MPQTERQLRVWIEGATG 17 (108)
T ss_dssp CCCSSHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHhC
Confidence 99999999999987653
No 4
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.35 E-value=45 Score=19.38 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=23.4
Q ss_pred HHHHHHHHHh-hhCCCceeEEeccccCCCCCCCCceeEEEeecC
Q psy11271 6 KEIKEFLLKA-RRKDAKSVTIKRNISKNKDKKPDNTKFKVRCSR 48 (78)
Q Consensus 6 ~dIK~Fl~~a-rrkDAksv~IKk~~~~~~~~~~~~tKFKvRcsr 48 (78)
.+|++||..- .+.+...|.|.++ .+.+..-|.|+|
T Consensus 10 a~Ire~l~k~l~~Agis~ieI~Rt--------~~~i~I~I~tar 45 (92)
T d1wh9a_ 10 AELNEFLTRELAEDGYSGVEVRVT--------PTRTEIIILATR 45 (92)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEEEC--------SSCEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCcceEEEEEC--------CCeEEEEEEeCC
Confidence 3688888754 3345566889987 666777666554
No 5
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.47 E-value=7.5 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=19.8
Q ss_pred EEEeecCcEEEEEecChHHHHHhHh
Q psy11271 42 FKVRCSRFLYTLVITDNEKAEKLKQ 66 (78)
Q Consensus 42 FKvRcsryLYTLvv~D~eKAeKl~q 66 (78)
+..=++.+|+++||.|.+-|.++.+
T Consensus 37 ve~aLG~~l~~vVV~~~~~A~~~i~ 61 (161)
T d1gxja_ 37 VSVLLGGTAQNIVVRNVDTAKAIVE 61 (161)
T ss_dssp HHHHHGGGGGCEEESSHHHHHHHHH
T ss_pred HHHHhhhhhceEEECCHHHHHHHHH
Confidence 3445778999999999998887754
No 6
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=25.43 E-value=46 Score=18.13 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.9
Q ss_pred EEEEEecChHHHHHhHhc
Q psy11271 50 LYTLVITDNEKAEKLKQS 67 (78)
Q Consensus 50 LYTLvv~D~eKAeKl~qS 67 (78)
++.++|+|+++|.++...
T Consensus 44 i~Riiv~~~e~a~~~L~~ 61 (70)
T d2f06a2 44 ILRGIVSDPDKAYKALKD 61 (70)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEEECChHHHHHHHHH
Confidence 455799999999886554
No 7
>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.82 E-value=12 Score=20.81 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=7.8
Q ss_pred cCcEEEEEec
Q psy11271 47 SRFLYTLVIT 56 (78)
Q Consensus 47 sryLYTLvv~ 56 (78)
.-|||+|.+.
T Consensus 72 ~P~LY~l~v~ 81 (103)
T d1bhga1 72 PAYLYSLEVQ 81 (103)
T ss_dssp CSCCEEEEEE
T ss_pred CCeEEEEEEE
Confidence 3789999765
No 8
>d1jz8a1 b.1.4.1 (A:220-333) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=23.96 E-value=13 Score=20.67 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=7.4
Q ss_pred CcEEEEEec
Q psy11271 48 RFLYTLVIT 56 (78)
Q Consensus 48 ryLYTLvv~ 56 (78)
-|||+|.+.
T Consensus 87 P~LY~l~v~ 95 (114)
T d1jz8a1 87 PNLYRAVVE 95 (114)
T ss_dssp BCCEEEEEE
T ss_pred CeEEEEEEE
Confidence 589999875
No 9
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=22.57 E-value=14 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=8.3
Q ss_pred cCcEEEEEec
Q psy11271 47 SRFLYTLVIT 56 (78)
Q Consensus 47 sryLYTLvv~ 56 (78)
+-|||++++.
T Consensus 83 ~P~LY~~~v~ 92 (110)
T d2vzsa1 83 GQHRYDLDLT 92 (110)
T ss_dssp CCCCEEEEEE
T ss_pred CccEEEEEEE
Confidence 5799999874
No 10
>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.25 E-value=9.5 Score=24.78 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=9.6
Q ss_pred cEEEEEecChH
Q psy11271 49 FLYTLVITDNE 59 (78)
Q Consensus 49 yLYTLvv~D~e 59 (78)
-||||++.|++
T Consensus 87 ~~ytlvm~DPD 97 (219)
T d1wpxb1 87 DLFTLVMTDPD 97 (219)
T ss_dssp CCEEEEEEESS
T ss_pred CeEEEEEECCC
Confidence 58999999985
No 11
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=21.16 E-value=27 Score=18.92 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=13.9
Q ss_pred EEEEEecChHHHHHhHhc
Q psy11271 50 LYTLVITDNEKAEKLKQS 67 (78)
Q Consensus 50 LYTLvv~D~eKAeKl~qS 67 (78)
+--|.|.|+++|.++.+.
T Consensus 40 ~~vl~vdd~~~a~~~L~~ 57 (71)
T d2f06a1 40 NVVIRPSNMDKCIEVLKE 57 (71)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 456888999999986543
No 12
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]}
Probab=20.69 E-value=29 Score=19.91 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=28.0
Q ss_pred CCceeEEEeecCcEEEEEecChHHHHHhHh-cCCCCCeee
Q psy11271 37 PDNTKFKVRCSRFLYTLVITDNEKAEKLKQ-SLPPGLQVK 75 (78)
Q Consensus 37 ~~~tKFKvRcsryLYTLvv~D~eKAeKl~q-SLPP~l~v~ 75 (78)
+..--|..|.-+=|--+.=.+.+-++.|.| .||+|..+.
T Consensus 56 ksreqfE~rthkR~i~i~~~~~~~~~~l~~~~lP~GV~i~ 95 (98)
T d2uubj1 56 DSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIE 95 (98)
T ss_dssp TCCCEEEEEEEEEEEECSSCCTTHHHHSSSCCCCSSCEEC
T ss_pred chHHHheeeEEEEEEEEeCCCHHHHHHHhCCCCCCCcEEE
Confidence 334579999877766665456677888555 899998874
No 13
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=20.63 E-value=17 Score=20.34 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=7.6
Q ss_pred cCcEEEEEec
Q psy11271 47 SRFLYTLVIT 56 (78)
Q Consensus 47 sryLYTLvv~ 56 (78)
.-||||+.+.
T Consensus 85 ~P~LY~~~v~ 94 (111)
T d2je8a1 85 TPTLYDFSAQ 94 (111)
T ss_dssp CBCCEEEEEE
T ss_pred CCceEEEEEE
Confidence 5699998764
Done!